RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8216
(189 letters)
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 161 bits (409), Expect = 4e-51
Identities = 72/176 (40%), Positives = 96/176 (54%), Gaps = 13/176 (7%)
Query: 5 PYLLNELEDLAHPN-IYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPW---RHVLE 60
P++ P+ ++DQ FG DL L Y+RP R
Sbjct: 8 PWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTST-------SLSPFYLRPPSFLRAPSW 60
Query: 61 NESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTR 120
++G+S L+K+ VNLDV+ F PEE+ VKV+ D I VH KHEER D+HGFISREF R
Sbjct: 61 FDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 121 RYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQGNK 176
+YRIP VD I S LSSDG+L++ P+K ER+IP+ + +PAV K
Sbjct: 121 KYRIPADVDPLTITSSLSSDGVLTVNGPRKQVS--GPERTIPITREEKPAVTAAPK 174
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 125 bits (316), Expect = 6e-38
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 63 SGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRY 122
SG+S D++ + LDV+ F PE++ VKV +DF+ +H KH ER D HG+ISREF RRY
Sbjct: 2 SGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRY 61
Query: 123 RIPDSVDAQAIASKLSSDGILSIQAPKK--ATKEGAGERSIPVVQ 165
R+P +VD A++ LS+DG+L+ PK G ER+IPV +
Sbjct: 62 RLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVSR 106
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 120 bits (302), Expect = 6e-36
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 64 GVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYR 123
++ D V LDV+ F PEEI VKVV D + VHA+HEER D+HGFI+REF RRYR
Sbjct: 2 AMAQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYR 61
Query: 124 IPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQ 165
+P VD A+ S LS +G+LSIQA + + S P +
Sbjct: 62 LPPGVDPAAVTSALSPEGVLSIQATPASAQA--SLPSPPAAK 101
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 117 bits (294), Expect = 8e-35
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 71 DKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDA 130
+ +V+LDV F P+E+ VK D + + KH R D+HG+ISR FTR+Y +P VD
Sbjct: 5 TADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDP 64
Query: 131 QAIASKLSSDGILSIQAPKK 150
++S LS +G L+++AP
Sbjct: 65 TQVSSSLSPEGTLTVEAPMP 84
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 116 bits (292), Expect = 1e-34
Identities = 47/85 (55%), Positives = 60/85 (70%)
Query: 70 LDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVD 129
++K+ VNLDV+ F PEE+ VKV+ D I VH KHEER D+HGFISREF R+YRIP VD
Sbjct: 3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVD 62
Query: 130 AQAIASKLSSDGILSIQAPKKATKE 154
I S +SSDG+L++ P+K
Sbjct: 63 PLTITSSMSSDGVLTVNGPRKQVSG 87
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 105 bits (263), Expect = 7e-28
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 2/115 (1%)
Query: 41 RILSVPLRSGYVRPWRHVLENESGVSNFGLD-KEGLKVNLDVQQFKPEEIDVKVVDDFIV 99
I L+ G D + KV +V+ FK EEI +K + +V
Sbjct: 79 AIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLV 138
Query: 100 VHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKE 154
V A+ +S R +P SVD I + +++D +L I+AP
Sbjct: 139 VRAQKSVACG-DAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNY 192
Score = 86.8 bits (214), Expect = 8e-21
Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 30 PHDLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEI 89
+ + ++ E + G K L++ +D F P+++
Sbjct: 192 YKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVD-PHFAPKDV 250
Query: 90 DVKVVDDFIVVHA---KHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQ 146
V + + VH K E+ + REF + + P+ VDA +++ DG++ ++
Sbjct: 251 KVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEI-VDGLMVVE 309
Query: 147 APK 149
AP
Sbjct: 310 APL 312
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 55.9 bits (136), Expect = 5e-11
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 71 DKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHA--KHEERSDQHGFISRE-----FTRRYR 123
+ + D+ P +I+V++ + + K E ++ F E F RR+
Sbjct: 12 EVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFA 71
Query: 124 IPDSVDAQAIASKLSSDGILSIQAPKKA 151
+PDS DA I + +G+L I+ PK+
Sbjct: 72 LPDSADADGITAAG-RNGVLEIRIPKRP 98
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 55.5 bits (134), Expect = 3e-10
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 71 DKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHA--KHEERSDQHGFISRE------FTRRY 122
+ +KV + E+I + V D + + A ++ I E R
Sbjct: 64 GDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI 123
Query: 123 RIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPV 163
++P +V + ++K +G+LS+ PK E + ++ I +
Sbjct: 124 KLPATVKEENASAKF-ENGVLSVILPK---AESSIKKGINI 160
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 55.0 bits (133), Expect = 4e-10
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 71 DKEGLKVNLDVQQFKPEEIDVKVVDDFIVV---HAKHEERSDQHGFISRE-----FTRRY 122
E D+ K EE+ V+V D ++V E+ + E F RR+
Sbjct: 51 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRF 110
Query: 123 RIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPV 163
R+ + + + + L +G+L++ PK K+ ++I +
Sbjct: 111 RLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKK-PEVKAIQI 149
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 47.2 bits (113), Expect = 1e-07
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 71 DKEGLKVNLDVQQFKPEEIDVKVVDD-FIVVHAKHEERSDQHGFISRE---FTRRYRIPD 126
+ L V D+ F E+I +V +++ A+ E ++++ + R+P
Sbjct: 32 EGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPY 91
Query: 127 SVDAQAIASKLSSDGILSIQAPKKATK 153
+V A S +G+L+I+ P T
Sbjct: 92 NVAKDAEISGKYENGVLTIRIPIAGTS 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 1e-04
Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 63/199 (31%)
Query: 2 SLIPYLLN-ELEDLAHPNIYDQH----------FGLGYHPHDLLQHFPTPRILSVPLRSG 50
SL Y LN L P+ DQ F + P ++ P S
Sbjct: 385 SL--YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP------------VASPFHSH 430
Query: 51 YVRPWRHVLENESGVSNFGLDKEGLKV-------NLDVQQFKPEEIDVKVVDDFIVVHAK 103
+ P ++ + +N + + +++ D++ I ++VD I+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS-GSISERIVDC-IIRLPV 488
Query: 104 HEERSDQ----HGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGER 159
E + Q H + +F P S G+L+ K+G G R
Sbjct: 489 KWETTTQFKATH-IL--DFG-----PGGA---------SGLGVLT-----HRNKDGTGVR 526
Query: 160 SIPV--VQTNQPAVKQGNK 176
I + N P G K
Sbjct: 527 VIVAGTLDIN-PDDDYGFK 544
>3fd3_A Chromosome replication initiation inhibitor prote; structural
genomics, LYSR, PSI-2, structure initiative; HET: MSE
P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Length = 208
Score = 29.3 bits (66), Expect = 0.52
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 15 AHPNIYDQHFGLGYHPHDLLQH 36
A P+ +HF G P L +
Sbjct: 79 ASPDFMARHFADGVTPAALARA 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.3
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 30/109 (27%)
Query: 28 YHPHDLLQHFPTPRILSVPLRSGYVRPW--RHVLENESGV-SNFGLDK--------EGLK 76
Y D+L F +V + + V + + S +D G
Sbjct: 16 YQYKDILSVF----------EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 77 VNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIP 125
K EE+ V F+ E + F+ R P
Sbjct: 66 RLFWTLLSKQEEM----VQKFVE-----EVLRINYKFLMSPIKTEQRQP 105
Score = 26.7 bits (58), Expect = 6.0
Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 65/175 (37%)
Query: 8 LNELEDLAHPNIYDQHFGLGYHPHDLLQHFP-----TPRILSVPLRSGYVRPWRHVLENE 62
LN LE P Y + F D L FP +LS+ + W V++++
Sbjct: 363 LNVLE----PAEYRKMF-------DRLSVFPPSAHIPTILLSL-I-------WFDVIKSD 403
Query: 63 SGV-----SNFGL----DKEG----------LKVNLD---------------VQQFKPEE 88
V + L KE LKV L+ + F ++
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 89 IDVKVVDDFIVVH-AKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGI 142
+ +D + H H + + ++ F + +D + + K+ D
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMT-LFRMVF-----LDFRFLEQKIRHDST 512
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.3
Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 17/35 (48%)
Query: 120 RRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKE 154
+ Y DS A AI KAT E
Sbjct: 30 KLYA-DDSAPALAI----------------KATME 47
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta
structure, parallel beta sheet, antiparallel beta sheet,
hydrolase inhibitor; 2.00A {Escherichia coli} SCOP:
c.8.7.1
Length = 161
Score = 26.9 bits (60), Expect = 3.3
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 148 PKKATKEGAGERSIPVV 164
P A EG GE + V
Sbjct: 116 PVGAAGEGIGESDVRVN 132
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Thermus thermophilus} SCOP:
c.8.7.1
Length = 164
Score = 26.4 bits (59), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 148 PKKATKEGAGERSIPVV 164
PKK+ KEG GE +P+
Sbjct: 115 PKKSAKEGKGEVDVPLK 131
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone
methyltransferase; beta/BETA/alpha domain, structural
genomics, PSI; HET: TLA; 1.90A {Mycobacterium
tuberculosis} SCOP: c.8.7.1
Length = 183
Score = 26.5 bits (59), Expect = 4.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 148 PKKATKEGAGERSIPVV 164
P+K+TK GAGER + +
Sbjct: 145 PRKSTKTGAGERDVEIT 161
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E
regulater, hydrolase regulator; HET: PGE PG4; 1.90A
{Pseudomonas aeruginosa}
Length = 162
Score = 26.4 bits (59), Expect = 4.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 148 PKKATKEGAGERSIPVV 164
P K K G G+ ++ V
Sbjct: 116 PLKTDKRGIGDLNVAVT 132
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics,
unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Length = 174
Score = 26.4 bits (59), Expect = 4.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 148 PKKATKEGAGERSIPVV 164
P K K GAG+ ++ +
Sbjct: 119 PFKTEKRGAGQVNVTLT 135
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta,
beta alpha domain; 1.90A {Geobacillus kaustophilus}
Length = 161
Score = 26.4 bits (59), Expect = 4.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 148 PKKATKEGAGERSIPVV 164
P K+ KEG G R + +
Sbjct: 114 PVKSKKEGKGARDVVLE 130
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 26.7 bits (60), Expect = 5.7
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 85 KPEEIDVKVVDDFIVVHAKHE 105
KP + ++K +D ++++ HE
Sbjct: 165 KPTQEEIKAMDASLILYTDHE 185
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 26.2 bits (58), Expect = 5.8
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 16/78 (20%)
Query: 86 PEEIDVKVVDDFIVVHAK------HEERSDQHGFISREFTRRYR------IPDSVD---- 129
ID D+ I+ HE +++++ +++
Sbjct: 94 DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPDIHR 153
Query: 130 AQAIASKLSSDGILSIQA 147
+ L DG+ A
Sbjct: 154 IDGLKRMLKEDGVFISVA 171
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 26.4 bits (59), Expect = 6.0
Identities = 3/21 (14%), Positives = 12/21 (57%)
Query: 85 KPEEIDVKVVDDFIVVHAKHE 105
K + ++ ++ ++++ HE
Sbjct: 169 KATKEEIDAMNTALILYTDHE 189
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 26.4 bits (58), Expect = 6.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 44 SVPLRSGY-VRPWRHVLENESG 64
V +R+ + +RPW+HVLE SG
Sbjct: 220 PVIIRNPHAIRPWQHVLEPLSG 241
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
e.8.1.1
Length = 847
Score = 26.4 bits (58), Expect = 7.4
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 10/65 (15%)
Query: 68 FGLDKEGLKVNLDVQQFKP----------EEIDVKVVDDFIVVHAKHEERSDQHGFISRE 117
F + + + D KP K+V D H + + D + + +
Sbjct: 35 FDKETQKIYALYDNTGHKPYFLVDLEPDKVGKIPKIVRDPSFDHIETVSKIDPYTWNKFK 94
Query: 118 FTRRY 122
T+
Sbjct: 95 LTKIV 99
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 26.1 bits (58), Expect = 8.5
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 82 QQFKPEEIDVKVVDDFIVVHAKHE 105
+ +K + + ++ +++HA HE
Sbjct: 215 EPYKVNPVLARAMNRILILHADHE 238
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 25.9 bits (58), Expect = 8.9
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 85 KPEEIDVKVVDDFIVVHAKHE 105
+P ++ +D ++++ HE
Sbjct: 164 EPTTDEINAMDKALILYTDHE 184
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET:
CMP; 1.90A {Anabaena SP}
Length = 398
Score = 26.0 bits (56), Expect = 9.1
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 18 NIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSG 50
++YD D + T +L +P+ +G
Sbjct: 285 DLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNG 317
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 26.1 bits (58), Expect = 9.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 82 QQFKPEEIDVKVVDDFIVVHAKHE 105
+ +KP+E+ +K +D ++HA HE
Sbjct: 212 ESYKPDELHIKAMDTIFMLHADHE 235
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 25.5 bits (57), Expect = 9.7
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 15 AHPNIYDQHFGLGYHPHDLLQHFP 38
+ +Y LG HP L +H
Sbjct: 55 NYQPLY---AALGLHPGMLEKHSD 75
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 26.0 bits (58), Expect = 9.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 137 LSSDGILSIQAPKKATKEGAG 157
+SSD +I+ KK G+G
Sbjct: 165 ISSDEFFNIKESKKIGIVGSG 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.391
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,933,016
Number of extensions: 171871
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 39
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.4 bits)