RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8216
         (189 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 71  DKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKH--------EERSDQHGFISREFTRRY 122
             + +KV   +     E+I +  V D + + AK         E           E  R  
Sbjct: 18  GDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI 77

Query: 123 RIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPV 163
           ++P +V  +  ++K   +G+LS+  PK    E + ++ I +
Sbjct: 78  KLPATVKEENASAKFE-NGVLSVILPK---AESSIKKGINI 114


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 18  NIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKV 77
           N++D    L   P D  +             + +        E            E    
Sbjct: 7   NVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETP----------EAHVF 56

Query: 78  NLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQH--------GFISREFTRRYRIPDSVD 129
             D+   K EE+ V+V D  ++V +    +  +            S +F RR+R+ +   
Sbjct: 57  KADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAK 116

Query: 130 AQAIASKLSSDGILSIQAPKKATKEGAGERSIPV 163
            + + + L  +G+L++  PK   K+    ++I +
Sbjct: 117 VEEVKAGLE-NGVLTVTVPKAEVKK-PEVKAIQI 148


>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 117

 Score = 23.9 bits (51), Expect = 8.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 137 LSSDGILSIQAPKKATKEGAG 157
           +SSD   +I+  KK    G+G
Sbjct: 11  ISSDEFFNIKESKKIGIVGSG 31


>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain
           {Escherichia coli [TaxId: 562]}
          Length = 91

 Score = 23.6 bits (51), Expect = 8.6
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 129 DAQAIASKLSSDGILSIQAPKKATKEG 155
            A A A K+  + + ++    KA  EG
Sbjct: 6   AANARAEKI--NALETVTIASKAGDEG 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 705,567
Number of extensions: 32113
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 9
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)