BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8218
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 45/222 (20%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR-----GEILIGGSNISPGYYKNPTKTKED 58
+ G P + +R+ D +EG +P P+ GE+ + G I+ GYY N T+
Sbjct: 355 AKTGLPIPLVRLRVAD-EEG------RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA 407
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+ +FRTGDI ++G + I DR KDL+K GE++S +E L P ++
Sbjct: 408 LTPDG---FFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEA 463
Query: 119 CVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKS 178
V + +P+P K L P EK EL EH K+
Sbjct: 464 AV-----------VAIPHP--------KWQERPLA----VVVPRGEKPTPEELNEHLLKA 500
Query: 179 NLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220
++++P+A E+ T+A K ++ ++E+Y++
Sbjct: 501 GFAKWQLPDAYVFAEEIPR------TSAGKFLKRALREQYKN 536
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKE-DFFDEEGK 65
G P + +++++ ++G + GEI+I G NI GY+K + +E ++DE+G+
Sbjct: 359 GVPXSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGR 415
Query: 66 RWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
++FRTGD+G + ++G + DR K+++K + G ++ ++EA L + ++ V G
Sbjct: 416 KFFRTGDVGFIDEEGFLHFQDRVKEVIKYK-GYTIAPFELEALLXKHEAVXDVAVIG 471
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 34 RGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
+GEI++ G +S GY NP KT E FF +G+ + TGDIG L +D ++ R +K
Sbjct: 348 QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIK 407
Query: 94 LQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTV 130
AG + L V +L P++ + K++ V
Sbjct: 408 Y-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKV 443
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 26 RVCD----KPFPRGEIL---IGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ 78
RV D K PRG+I + G N+ GY++ P KTK +F D+ +F TGD+G++ +
Sbjct: 332 RVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDG---FFITGDLGKIDE 388
Query: 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY 128
G + I+ R KDLV + G V ++E+E+ P + V G D+
Sbjct: 389 RGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADF 437
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEE-----GKRWFRTGDIGELHQDGVIRIIDRKK 89
GE+ + G+ ++ GY P T E F + G+R +RTGD+ DGV+ + R
Sbjct: 410 GELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRAD 469
Query: 90 DLVKLQAGEYVSLGKVEAELKTCPVIENICVYG-DSR 125
D VK++ G V G+VEA L P + V DSR
Sbjct: 470 DQVKIR-GFRVEPGEVEARLVGHPAVRQAAVLAQDSR 505
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
G AG T D+ V D+G R GE++I + Y+ P T+ D FD
Sbjct: 336 AGSAGRATMFTDVA-VRGDDGVIR----EHGEGEVVIKSDILLKEYWNRPEATR-DAFD- 388
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
WFRTGDIGE+ +G + I DR KD++ + GE V ++E+ + P + + V G
Sbjct: 389 --NGWFRTGDIGEIDDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445
Query: 123 ---DSRKDYTVALVVPNPSRLKE 142
+ + A+VV + + + E
Sbjct: 446 LPDEKWGEIAAAIVVADQNEVSE 468
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 36/178 (20%)
Query: 32 FPRGEIL---IGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRK 88
PRG+I + G N+ GY++ P T +F D+ +F TGD+G + + G + I+ R
Sbjct: 342 LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG---FFITGDLGXIDERGYVHILGRG 398
Query: 89 KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY---TVALVVPNPSRLKEIAE 145
DLV + G V ++E+E+ P + V G D+ A VV +E A
Sbjct: 399 XDLV-ITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVV----LXREFAP 453
Query: 146 KLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLV 203
E QVL HG L F +P V ++ MG V
Sbjct: 454 S-----------------EAQVL-----HGLDGQLAXFXMPXXVIFVDDLPRNTMGAV 489
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G +G + +++D D + P RGE+ + G + GY NP TKE DEE
Sbjct: 362 GASGKVVPLFKAKVIDLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKE-LIDEE 417
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
G W TGDIG ++ I+DR K L+K + G V ++E+ L P I + V G
Sbjct: 418 G--WLHTGDIGYYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGVAG 473
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G +G + +++D D + P RGE+ + G + GY NP TKE DEE
Sbjct: 362 GASGKVVPLFKAKVIDLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKE-LIDEE 417
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
G W TGDIG ++ I+DR K L+K + G V ++E+ L P I + V G
Sbjct: 418 G--WLHTGDIGYYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGVAG 473
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G +G + +++D D + P RGE+ + G + GY NP TKE DEE
Sbjct: 362 GASGKVVPLFKAKVIDLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKE-LIDEE 417
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
G W TGDIG ++ I+DR K L+K + G V ++E+ L P I + V G
Sbjct: 418 G--WLHTGDIGYYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGVAG 473
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 30 KPFP---RGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIID 86
+P P +GEI+I G ++S GY P T++ FF EG+ +RTGD G + QDG I
Sbjct: 337 QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQG 395
Query: 87 RKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY---GDSRKDYTVALVVP 135
R +KL G + L ++E ++ + + V + +Y +A +VP
Sbjct: 396 RLDFQIKLH-GYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVP 446
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 36/178 (20%)
Query: 32 FPRGEIL---IGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRK 88
PRG+I + G N+ GY++ P T +F D+ +F TGD+G + + G + I+ R
Sbjct: 342 LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG---FFITGDLGXIDERGYVHILGRG 398
Query: 89 KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY---TVALVVPNPSRLKEIAE 145
DLV + G V ++E+E+ P + V G D+ A+VV ++
Sbjct: 399 XDLV-ITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVV------RDXGA 451
Query: 146 KLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLV 203
++ E QVL HG L F +P V ++ MG V
Sbjct: 452 TID---------------EAQVL-----HGLDGQLAXFXMPXXVIFVDDLPRNTMGAV 489
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNIS-PGYYKNPTKTKEDFFD 61
TG AP ++R+V G + GE+++ S+ + GY P T E D
Sbjct: 320 TGTEMAPGFFSEVRIVRIGGGVDEIVANG-EEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
W+RT D+ +G +RI+ R D++ + GE + ++E L T P + + V
Sbjct: 379 G----WYRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 122 G--DSRKDYTV-ALVVPNPSRLKEIAEKLNLDSL-TF 154
G D R +V A VVP + E L+ D+L TF
Sbjct: 434 GLADQRWGQSVTACVVPR------LGETLSADALDTF 464
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNIS-PGYYKNPTKTKEDFFD 61
TG AP ++R+V G + GE+++ S+ + GY P T E D
Sbjct: 320 TGTEMAPGFFSEVRIVRIGGGVDEIVANG-EEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
W+RT D+ +G +RI+ R D++ + GE + ++E L T P + + V
Sbjct: 379 G----WYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 122 G--DSRKDYTV-ALVVPNPSRLKEIAEKLNLDSL-TF 154
G D R +V A VVP + E L+ D+L TF
Sbjct: 434 GLADQRWGQSVTACVVPR------LGETLSADALDTF 464
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNIS-PGYYKNPTKTKEDFFD 61
TG AP ++R+V G + GE+++ S+ + GY P T E D
Sbjct: 320 TGTEMAPGFFSEVRIVRIGGGVDEIVANG-EEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
W+RT D+ +G +RI+ R D++ + GE + ++E L T P + + V
Sbjct: 379 G----WYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 122 G--DSRKDYTV-ALVVPNPSRLKEIAEKLNLDSL-TF 154
G D R +V A VVP + E L+ D+L TF
Sbjct: 434 GLADQRWGQSVTACVVPR------LGETLSADALDTF 464
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNIS-PGYYKNPTKTKEDFFD 61
TG AP ++R+V G + GE+++ S+ + GY P T E D
Sbjct: 320 TGTEMAPGFFSEVRIVRIGGGVDEIVANG-EEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
W+RT D+ +G +RI+ R D++ + GE + ++E L T P + + V
Sbjct: 379 G----WYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 122 G--DSRKDYTV-ALVVPNPSRLKEIAEKLNLDSL-TF 154
G D R +V A VVP + E L+ D+L TF
Sbjct: 434 GLADQRWGQSVTACVVPR------LGETLSADALDTF 464
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 34 RGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
+GEI+I G ++S GY +P T++ F +G+R ++TGD G + ++G++ R +K
Sbjct: 345 KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIK 403
Query: 94 LQAGEYVSLGKVEAELKTCPVIEN---ICVYGDSRKDYTVALVVP 135
L G + L ++E L+ C +E + + + DY +A+VVP
Sbjct: 404 LH-GYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVP 447
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G ++VD D G ++ RGE+ + G I GY NP T D++
Sbjct: 395 GACGKVVPFFSAKIVDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSA-LIDKD 450
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
G W +GDI +DG I+DR K L+K + G V ++E+ L P I + V G
Sbjct: 451 G--WLHSGDIAYYDKDGYFFIVDRLKSLIKYK-GYQVPPAELESILLQHPFIFDAGVAG 506
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 34 RGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
+GEI+I G ++S GY +P T++ F +G+R ++TGD G + ++G++ R +K
Sbjct: 345 KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIK 403
Query: 94 LQAGEYVSLGKVEAELKTCPVIEN---ICVYGDSRKDYTVALVVP 135
L G + L ++E L+ C +E + + + DY +A+VVP
Sbjct: 404 LH-GYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVP 447
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNIS-PGYYKNPTKTKEDFFD 61
TG AP ++R+V G + GE+++ S+ + GY P T E D
Sbjct: 320 TGTEMAPGFFSEVRIVRIGGGVDEIVANG-EEGELIVAASDSAFVGYLNQPEATAEKLQD 378
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
W+RT D+ +G +RI+ R D++ + GE + ++E L T P + + V
Sbjct: 379 G----WYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 122 G--DSRKDYTV-ALVVPNPSRLKEIAEKLNLDSL-TF 154
G D R +V A VVP + E L+ D+L TF
Sbjct: 434 GLADQRWGQSVTACVVPR------LGETLSADALDTF 464
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 34 RGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
GE++I G+N+ GY PT F E G +F TGDI E+ +G + I DR+KDL+
Sbjct: 348 HGELMIKGANVMNGYLY-PTDLTGTF--ENG--YFNTGDIAEIDHEGYVMIYDRRKDLI- 401
Query: 94 LQAGEYVSLGKVEAELKTCPVIEN-ICV 120
+ GE + ++E K P I + +CV
Sbjct: 402 ISGGENIYPYQIETVAKQFPGISDAVCV 429
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 29 DKPFPRGE---ILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRII 85
D+P P GE I++ G + GY+ N T+ F + W TGD+G DG +
Sbjct: 339 DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG----WHHTGDMGRFDADGYLFYA 394
Query: 86 DR--KKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
R +K+L+K GE V +VE LK P I + V G
Sbjct: 395 GRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIG 432
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
G G P ++RLV+ D D GEI + G N+ Y P T F E
Sbjct: 323 AGTVGVPLPGVELRLVEEDGTPIAALDGES-VGEIQVRGPNLFTEYLNRPDATAA-AFTE 380
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKK-DLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
+G +FRTGD+ DG +RI+ RK DL+K G + G++E L P + V
Sbjct: 381 DG--FFRTGDMAVRDPDGYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVT 437
Query: 122 GDSRKD 127
G+ D
Sbjct: 438 GEPDPD 443
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 17/157 (10%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNIS-PGYYKNPTKTKEDFFD 61
TG AP ++R+V G + GE+++ S+ + GY P T E D
Sbjct: 320 TGTEXAPGFFSEVRIVRIGGGVDEIVANG-EEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
W+RT D+ +G +RI+ R D + + GE + ++E L T P + + V
Sbjct: 379 G----WYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 122 G--DSRKDYTV-ALVVPNPSRLKEIAEKLNLDSL-TF 154
G D R +V A VVP + E L+ D+L TF
Sbjct: 434 GLADQRWGQSVTACVVPR------LGETLSADALDTF 464
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 32 FPRGEIL---IGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRK 88
PRG+I + G N+ GY++ P T +F D+ +F TGD+G + + G + I+ R
Sbjct: 342 LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG---FFITGDLGXIDERGYVHILGRG 398
Query: 89 KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY 128
DLV + G V ++E+E+ P + V G D+
Sbjct: 399 XDLV-ITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADF 437
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 30 KPF-PRGEILIGGSNISPGYYKNPTKTKEDFFD---EEGKRWFRTGDIGELHQDGVIRII 85
+PF GE+ I G +S GY TKE F + + G+ +RTGD+ DG I
Sbjct: 798 QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYA 857
Query: 86 DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
R D VK++ G + L ++E +L+ P +++ V D
Sbjct: 858 GRIDDQVKIR-GHRIELEEIEKQLQEYPGVKDAVVVAD 894
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G + ++VD D G ++ RGE+ + G I GY NP T D++
Sbjct: 365 GAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNA-LIDKD 420
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
G W +GDI +D I+DR K L+K + G V+ ++E+ L P I + V G
Sbjct: 421 G--WLHSGDIAYWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGL 477
Query: 123 --DSRKDYTVALVV 134
D + A+VV
Sbjct: 478 PDDDAGELPAAVVV 491
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G + ++VD D G ++ RGE+ + G I GY NP T D++
Sbjct: 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNA-LIDKD 415
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
G W +GDI +D I+DR K L+K + G V+ ++E+ L P I + V G
Sbjct: 416 G--WLHSGDIAYWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGL 472
Query: 123 --DSRKDYTVALVV 134
D + A+VV
Sbjct: 473 PDDDAGELPAAVVV 486
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G + ++VD D G ++ RGE+ + G I GY NP T D++
Sbjct: 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNA-LIDKD 415
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
G W +GDI +D I+DR K L+K + G V+ ++E+ L P I + V G
Sbjct: 416 G--WLHSGDIAYWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGL 472
Query: 123 --DSRKDYTVALVV 134
D + A+VV
Sbjct: 473 PDDDAGELPAAVVV 486
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
+G G ++++VD D G+ ++P GEI I G I GY NP T E D+
Sbjct: 401 SGACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQIMKGYLNNPAATAETI-DK 456
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
+G W TGDIG + D + I+DR K+L+K + G V+ ++EA L P I ++ V
Sbjct: 457 DG--WLHTGDIGLIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLIGHPDITDVAVVA 513
Query: 123 ---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVE 170
++ + VA VV S+ E++E ++ +Q+ + I K E
Sbjct: 514 MKEEAAGEVPVAFVV--KSKDSELSED-DVKQFVSKQVVFYKRINKVFFTE 561
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G + ++VD D G ++ RGE+ + G I GY NP T D++
Sbjct: 365 GAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNA-LIDKD 420
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
G W +GDI +D I+DR K L+K + G V+ ++E+ L P I + V G
Sbjct: 421 G--WLHSGDIAYWDEDEHFFIVDRLKSLIKYK-GCQVAPAELESILLQHPNIFDAGVAGL 477
Query: 123 --DSRKDYTVALVV 134
D + A+VV
Sbjct: 478 PDDDAGELPAAVVV 491
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE---E 63
GAP I +VD + V + GE+ IGG ++ GY+K P T + F D
Sbjct: 349 GAPIQNTQIYIVDENLQLKSVGEA----GELCIGGEGLARGYWKRPELTSQKFVDNPFVP 404
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAEL 109
G++ ++TGD DG I + R + VK++ G V L +VE+ L
Sbjct: 405 GEKLYKTGDQARWLSDGNIEYLGRIDNQVKIR-GHRVELEEVESIL 449
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 36/213 (16%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKR 66
G P + D V WD+ + V KP G +L G GYYK F E+G
Sbjct: 354 GKPMSPYDESRV-WDDHDRDV--KPGETGHLLTRGPYTIRGYYKAEEHNAASF-TEDG-- 407
Query: 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK 126
++RTGDI L +DG I + R KD + + GE V+ +VE L P + +
Sbjct: 408 FYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD--------- 457
Query: 127 DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH--PEIEKQVLVELQEHGKKSNLERFE 184
A +V P D ++ C P E EL+ ++ L ++
Sbjct: 458 ----AAMVSMP------------DQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYK 501
Query: 185 IPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217
IP+ V+ P G+ + K R+ I E+
Sbjct: 502 IPDRVEFVESF--PQTGVGKVSKKALREAISEK 532
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 36/213 (16%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKR 66
G P + D V WD+ + V KP G +L G GYYK F E+G
Sbjct: 354 GKPXSPYDESRV-WDDHDRDV--KPGETGHLLTRGPYTIRGYYKAEEHNAASF-TEDG-- 407
Query: 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK 126
++RTGDI L +DG I + R KD + + GE V+ +VE L P + +
Sbjct: 408 FYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD--------- 457
Query: 127 DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH--PEIEKQVLVELQEHGKKSNLERFE 184
A V P D ++ C P E EL+ ++ L ++
Sbjct: 458 ----AAXVSXP------------DQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYK 501
Query: 185 IPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217
IP+ V+ P G+ + K R+ I E+
Sbjct: 502 IPDRVEFVESF--PQTGVGKVSKKALREAISEK 532
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GE++I GS ++ GY P + F D G++ +RTGDI D I + RK + VK+
Sbjct: 375 GELVIEGSLVANGYLNRPDA--KGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKV 432
Query: 95 QAGEYVSLGKVEAELKTCP-----VIENICVYGDSRKDYTVALVVPNPSRLK 141
+ G+ + LG+V +++ V+ + + + K + V+ V + + ++
Sbjct: 433 R-GQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR 483
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G ++++VD + G ++P GEI I G I GY +P T D+E
Sbjct: 355 GACGTVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGYLNDPEATSRTI-DKE 410
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
G W TGDIG + D + I+DR K+L+K + G V+ ++EA L P I + V G
Sbjct: 411 G--WLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLIAHPEISDAAVVGL 467
Query: 124 SRKD---YTVALVV 134
+D VA VV
Sbjct: 468 KDEDAGEVPVAFVV 481
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 25/151 (16%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISP-----GYYKNPTKTKED 58
G G PT I L+D D R+C+ GEI+I P Y K+P +T+E
Sbjct: 393 GSIGKPTPGYKIELMDRDG---RLCEVG-EEGEIVINTMEGKPVGLFVHYGKDPERTEET 448
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+ D ++ TGD+ + +DG + + R D++K +G V +VE+ L P +
Sbjct: 449 WHD----GYYHTGDMAWMDEDGYLWFVGRADDIIK-TSGYKVGPFEVESALIQHPAVLEC 503
Query: 119 CVYGDSRKDYTVALVVPNPSRLKEIAEKLNL 149
+ G VP+P R + I + L
Sbjct: 504 AITG-----------VPDPVRGQVIKATIVL 523
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFF-----DEEGKRWFRTGDIGELHQDGVIRIIDRKK 89
GEI + ++++ GY+ P +T+ F DE + RTGD+G LH++ + + R K
Sbjct: 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENE-LYVTGRIK 458
Query: 90 DLV 92
DL+
Sbjct: 459 DLI 461
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEE-----GKRWFRTGDIGELHQDGVIRIIDRK 88
GE+ + G+ ++ GY P T E F + G+R +RTGD+ DGV+ + R
Sbjct: 410 GELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRA 468
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
G AG T D+ V D+G R GE++I + Y+ P T+ D FD
Sbjct: 322 AGSAGRATMFTDVA-VRGDDGVIR----EHGEGEVVIKSDILLKEYWNRPEATR-DAFD- 374
Query: 63 EGKRWFRTGDIGELHQDGVIRIID 86
WFRTGDIGE+ +G + I D
Sbjct: 375 --NGWFRTGDIGEIDDEGYLYIKD 396
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGK----RWFRTGDIGELHQDGVIRIIDRKKD 90
GEI+ G+ ++ GY + +T+ F + + R +RTGD + G +R I R
Sbjct: 361 GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDG 420
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLD 150
VKL G + L +E + P I + C ++ L+ + + L
Sbjct: 421 QVKLN-GYRLDLPALEQRFRRQPGILD-CALLVRERNGVKQLLCAWTGKADASPQALLRQ 478
Query: 151 SLTFQQLCTHPEIEKQVLVELQEHGK---KSNLERFEIPNAVKLCSEVWSPD 199
T+Q+ H + + L L HGK + L R E P ++ C+ PD
Sbjct: 479 LPTWQR--PHACVRVEAL-PLTAHGKLDRAALLRRLEEP--LERCASALDPD 525
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 47 GYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVE 106
GYY++P + FDE+ ++ +GD+ + DG +R++ R KD + + GE ++ ++E
Sbjct: 400 GYYQSPEHNSQ-VFDEDN--YYYSGDLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIE 455
Query: 107 AELKTCPVIEN---ICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156
+ P + + + + + + + A +V LK + + +L L Q
Sbjct: 456 KLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQ 508
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 31 PFPRGEILIGGSNISPGYYKNPTKTKEDF---FDE---EGKRWFRTGDIGELHQDGVIRI 84
P GE+ + G+ ++ GY + P T E F DE E R++RTGD+ DG
Sbjct: 374 PGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAY 433
Query: 85 IDRKKDLVKLQAGEYVSLGKVEAELK 110
R +KL+ G + L +E ++
Sbjct: 434 EGRADLQIKLR-GYRIELSDIETAVR 458
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDE---------EGKRWFRTGDIGELHQDGVIRII 85
GEI + G N++ GY++ P +++ F + EG W RTGD G + DG + II
Sbjct: 421 GEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGP-WLRTGDSGFV-TDGKMFII 478
Query: 86 DR 87
R
Sbjct: 479 GR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDE---------EGKRWFRTGDIGELHQDGVIRII 85
GEI + G N++ GY++ P +++ F + EG W RTGD G + DG II
Sbjct: 421 GEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGP-WLRTGDSGFV-TDGKXFII 478
Query: 86 DR 87
R
Sbjct: 479 GR 480
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
++ TGD +DG I I+ R D+V + +G +S ++EA + P++ V G
Sbjct: 504 YYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVG 558
>pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synthase
pdb|1JR2|B Chain B, Structure Of Uroporphyrinogen Iii Synthase
Length = 286
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 105 VEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEK------LNLDSLTFQQLC 158
++ E +TC E + Y SR+ + L+ P + +EI K + ++S+T Q
Sbjct: 133 LDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTV 192
Query: 159 THPEIEKQVLVELQEHGKKSNLERF 183
HP I+ + + G +++ F
Sbjct: 193 AHPGIQGNLNSYYSQQGVPASITFF 217
>pdb|1ZXF|A Chain A, Solution Structure Of A Self-Sacrificing Resistance
Protein, Calc From Micromonospora Echinospora
pdb|2GKD|A Chain A, Structural Insight Into Self-Sacrifice Mechanism Of
Enediyne Resistance
pdb|2L65|A Chain A, Haddock Calculated Model Of The Complex Of The
Resistance Protein Calc And Calicheamicin-Gamma
Length = 155
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
D++G RW+ + GE H G+IR +D LV
Sbjct: 47 DKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLV 78
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 136 NPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEI-PNAVKLCSE 194
NP +E EKL+ S+TF L +IE L +E LE ++ P L E
Sbjct: 589 NPLVTREDIEKLDSGSITFDDLVRQGKIE--YLDAEEEENAYVALEPSDLTPEHTHL--E 644
Query: 195 VWSPDMGLVTAAF 207
+WSP + +TA+
Sbjct: 645 IWSPAILGITASI 657
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,505,069
Number of Sequences: 62578
Number of extensions: 328966
Number of successful extensions: 810
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 53
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)