Query psy8218
Match_columns 228
No_of_seqs 129 out of 1862
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 21:40:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.3E-39 1.5E-43 286.6 13.9 186 3-228 350-539 (539)
2 4fuq_A Malonyl COA synthetase; 100.0 8.2E-39 2.8E-43 282.6 14.6 180 2-220 318-500 (503)
3 3ni2_A 4-coumarate:COA ligase; 100.0 1.7E-38 5.9E-43 282.5 14.3 180 2-220 353-535 (536)
4 3g7s_A Long-chain-fatty-acid-- 100.0 1.5E-38 5.3E-43 283.6 12.6 186 2-221 354-543 (549)
5 2d1s_A Luciferase, luciferin 4 100.0 2.3E-38 7.9E-43 282.5 11.0 185 2-225 360-548 (548)
6 3e7w_A D-alanine--poly(phospho 100.0 3.6E-37 1.2E-41 272.5 17.6 185 3-221 317-504 (511)
7 3l8c_A D-alanine--poly(phospho 100.0 8.8E-38 3E-42 276.8 11.5 190 2-221 320-513 (521)
8 3fce_A D-alanine--poly(phospho 100.0 7.6E-37 2.6E-41 270.4 15.8 186 2-221 317-505 (512)
9 3etc_A AMP-binding protein; ad 100.0 2.3E-37 8E-42 277.7 12.3 181 2-220 391-579 (580)
10 1pg4_A Acetyl-COA synthetase; 100.0 5.3E-37 1.8E-41 278.8 12.8 187 2-224 433-625 (652)
11 1amu_A GRSA, gramicidin synthe 100.0 4.6E-37 1.6E-41 274.9 11.1 178 2-218 344-527 (563)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.8E-36 6.1E-41 267.6 14.6 177 2-219 319-503 (504)
13 3nyq_A Malonyl-COA ligase; A/B 100.0 7.4E-37 2.5E-41 270.3 11.8 180 2-217 322-505 (505)
14 3r44_A Fatty acyl COA syntheta 100.0 8.1E-37 2.8E-41 270.7 10.4 178 2-222 335-515 (517)
15 1v25_A Long-chain-fatty-acid-C 100.0 4.1E-37 1.4E-41 274.0 6.7 181 3-222 354-538 (541)
16 3c5e_A Acyl-coenzyme A synthet 100.0 1.5E-35 5.1E-40 265.5 15.8 183 2-220 372-562 (570)
17 4gr5_A Non-ribosomal peptide s 100.0 4.9E-37 1.7E-41 275.0 5.8 179 3-217 382-568 (570)
18 3rix_A Luciferase, luciferin 4 100.0 7.2E-37 2.5E-41 272.8 5.5 184 2-224 358-545 (550)
19 1ry2_A Acetyl-coenzyme A synth 100.0 5.5E-36 1.9E-40 272.6 11.2 196 2-224 440-641 (663)
20 3tsy_A Fusion protein 4-coumar 100.0 1.4E-36 4.8E-41 287.0 7.1 187 2-227 400-589 (979)
21 3ivr_A Putative long-chain-fat 100.0 1.1E-36 3.7E-41 269.2 5.6 178 3-221 320-502 (509)
22 3rg2_A Enterobactin synthase c 100.0 7E-35 2.4E-39 263.3 17.5 180 4-224 355-538 (617)
23 3o83_A Peptide arylation enzym 100.0 1.9E-36 6.3E-41 269.9 5.3 178 4-221 360-541 (544)
24 2v7b_A Benzoate-coenzyme A lig 100.0 6.1E-35 2.1E-39 259.1 14.4 178 2-217 350-529 (529)
25 3ipl_A 2-succinylbenzoate--COA 100.0 1.4E-34 4.7E-39 255.2 13.9 171 2-221 325-498 (501)
26 4dg8_A PA1221; ANL superfamily 100.0 7.9E-35 2.7E-39 263.1 9.9 176 2-220 331-513 (620)
27 3ite_A SIDN siderophore synthe 100.0 6.4E-35 2.2E-39 260.7 6.7 194 2-221 345-544 (562)
28 2vsq_A Surfactin synthetase su 100.0 4.6E-34 1.6E-38 276.4 12.4 176 3-217 776-957 (1304)
29 3gqw_A Fatty acid AMP ligase; 100.0 1.1E-33 3.7E-38 253.0 10.8 181 5-227 386-570 (576)
30 3kxw_A Saframycin MX1 syntheta 100.0 5.2E-32 1.8E-36 242.9 8.9 181 4-220 374-567 (590)
31 4gs5_A Acyl-COA synthetase (AM 99.9 1.9E-27 6.6E-32 201.6 9.1 152 33-221 197-355 (358)
32 3qov_A Phenylacetate-coenzyme 99.9 1.6E-24 5.4E-29 187.9 8.1 159 5-213 257-430 (436)
33 2y4o_A Phenylacetate-coenzyme 99.9 6.7E-25 2.3E-29 190.6 5.6 162 6-216 265-440 (443)
34 2y27_A Phenylacetate-coenzyme 99.9 1.4E-23 4.7E-28 182.0 8.0 158 6-213 263-432 (437)
35 3t5a_A Long-chain-fatty-acid-- 99.7 5.5E-18 1.9E-22 148.0 4.9 79 4-87 394-480 (480)
36 3lax_A Phenylacetate-coenzyme 99.4 2.1E-13 7.1E-18 95.8 7.4 96 86-211 1-101 (109)
37 3gxs_A Phenylacetate-coenzyme 99.3 2.1E-12 7.2E-17 90.7 7.1 97 86-212 1-102 (109)
38 3hgu_A EHPF; phenazine, antibi 97.9 1.7E-05 5.8E-10 66.6 6.5 72 5-97 281-367 (369)
39 4eql_A 4-substituted benzoates 97.1 0.00052 1.8E-08 61.0 5.2 63 29-112 381-447 (581)
40 4b2g_A GH3-1 auxin conjugating 97.1 0.00038 1.3E-08 62.1 4.3 62 29-111 393-458 (609)
41 4epl_A Jasmonic acid-amido syn 96.7 0.0013 4.5E-08 58.4 4.6 62 29-111 388-453 (581)
42 4gs5_A Acyl-COA synthetase (AM 82.6 0.59 2E-05 38.6 2.3 37 2-52 197-233 (358)
43 1uhe_A Aspartate 1-decarboxyla 37.1 46 0.0016 21.9 3.9 34 9-44 13-50 (97)
44 2cvi_A 75AA long hypothetical 25.1 1.2E+02 0.0042 18.4 6.6 34 102-136 15-48 (83)
45 3plx_B Aspartate 1-decarboxyla 23.1 1.1E+02 0.0037 20.3 3.8 34 9-44 14-51 (102)
46 2zbc_A 83AA long hypothetical 21.6 1.4E+02 0.0048 17.9 5.8 23 102-124 15-37 (83)
47 2djw_A Probable transcriptiona 20.1 1.7E+02 0.0057 18.2 5.8 35 102-137 15-49 (92)
48 1vc3_B L-aspartate-alpha-decar 20.1 1.5E+02 0.0052 19.3 4.0 35 9-44 14-52 (96)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.3e-39 Score=286.63 Aligned_cols=186 Identities=25% Similarity=0.412 Sum_probs=162.7
Q ss_pred CCCccCCCCC-ceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 3 TGRAGAPTTV-CDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 3 ~~s~G~plpg-~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.+++|+|+++ .+++|+| +++++++ +|++|||+|+||+++.|||++|+.|...|. .+| ||+|||+|++|++|+
T Consensus 350 ~~~~G~p~~~~~~~~i~d-~~~~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~-~~g--~~~TGDlg~~~~dG~ 422 (539)
T 1mdb_A 350 VNTQGKPMSPYDESRVWD-DHDRDVK---PGETGHLLTRGPYTIRGYYKAEEHNAASFT-EDG--FYRTGDIVRLTRDGY 422 (539)
T ss_dssp HHCCCEESSTTCEEEEEC-TTSCBCC---TTCCEEEEEECTTSCSSCTTCHHHHHHHBC-TTS--CEEEEEEEEECTTSC
T ss_pred CCCCCcccCCCceEEEEC-CCCCCCc---CCCcceEEeeCcccchhhcCChhhhhhhcc-CCC--CeecCceEEECCCCc
Confidence 3589999976 4899999 7888887 568999999999999999999999999884 578 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||+.|.+||.|.+|+|++.++.. .++|+|++......
T Consensus 423 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~----------------- 484 (539)
T 1mdb_A 423 IVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK----------------- 484 (539)
T ss_dssp EEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCC-----------------
T ss_pred EEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCC-----------------
Confidence 9999999999996 79999999999999999999999999977543 58899988642111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
.++|+++++++.|+.|++|+.|++++++| +|++||++|++|+++|.+.|+++|++
T Consensus 485 ---------~~~l~~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 485 ---------AAELKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp ---------HHHHHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred ---------HHHHHHHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHHHhccccC
Confidence 46788888834499999999999999999 99999999999999999999999974
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.2e-39 Score=282.61 Aligned_cols=180 Identities=26% Similarity=0.427 Sum_probs=161.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.++++|+|+|+++++|+|++++++++ +|++|||+|+||+++.|||++|+.|...|. ++| ||+|||+|++|++|+
T Consensus 318 ~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~-~~g--~~~TGDl~~~~~dG~ 391 (503)
T 4fuq_A 318 VPGAVGPALPGVSARVTDPETGKELP---RGDIGMIEVKGPNVFKGYWRMPEKTKSEFR-DDG--FFITGDLGKIDERGY 391 (503)
T ss_dssp CTTEEEEBCTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCCCBTTCHHHHHHTBC-TTS--CEEEEEEEEECTTCE
T ss_pred cCCccccCCCCeEEEEEECCCCCCCc---CCCceEEEEECCchhhhhcCChhhhHhhhC-CCC--CeEcceeEEEcCCCc
Confidence 46789999999999999988899887 568999999999999999999999999984 577 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++.. .++|+|++......+
T Consensus 392 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~---------------- 454 (503)
T 4fuq_A 392 VHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATID---------------- 454 (503)
T ss_dssp EEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC----------------
T ss_pred EEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCC----------------
Confidence 9999999999996 79999999999999999999999999876543 488899887643111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+++.++++ ..|+.|++|+.|++++++| +|++||++|++|+++|++
T Consensus 455 ---------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 455 ---------EAQVLHGLD-GQLAKFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp ---------HHHHHHHHB-TTBCGGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred ---------HHHHHHHHH-hhcccCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence 467888888 8899999999999999999 999999999999999864
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.7e-38 Score=282.49 Aligned_cols=180 Identities=28% Similarity=0.418 Sum_probs=159.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+|++++++++ +|++|||+|+||+++.|||++|+.|...| +.+| ||+|||+|++|++|+
T Consensus 353 ~~~~~G~~~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~~g--~~~TGDl~~~~~dG~ 426 (536)
T 3ni2_A 353 KPGACGTVVRNAEMKIVDPETGASLP---RNQPGEICIRGDQIMKGYLNDPEATSRTI-DKEG--WLHTGDIGYIDDDDE 426 (536)
T ss_dssp CTTCCCEECSSCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTCHHHHHHHB-CTTS--CEEEEEEEEECTTSC
T ss_pred CCCCeeEeCCCcEEEEEeCCCCcCCC---CCCccEEEEeCcccchhhcCChhHHHhhc-cCCC--ceEcccEEEEcCCce
Confidence 57899999999999999988898887 56899999999999999999999999888 4577 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++.+.....
T Consensus 427 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---------------- 489 (536)
T 3ni2_A 427 LFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---------------- 489 (536)
T ss_dssp EEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC----------------
T ss_pred EEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCC----------------
Confidence 9999999999997 79999999999999999999999999876543 488999887642110
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.++|+++++ ..++.|++|+.|++++++| +|++|||+|++|+++|.+
T Consensus 490 ---------~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 490 ---------EDEIKQYIS-KQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ---------HHHHHHHHH-TTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred ---------HHHHHHHHH-HhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence 467888998 8899999999999999999 999999999999998864
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.5e-38 Score=283.56 Aligned_cols=186 Identities=25% Similarity=0.426 Sum_probs=130.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccc-ccCCCeeeeeccEEEEeeCC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF-DEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~-~~~g~~~~~TGDl~~~~~~G 80 (228)
+.+++|+|+|+++++|+|++++++++ +|++|||+|+||+++.|||++|+.|...|. +.+|.+||+|||+|++|++|
T Consensus 354 ~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG 430 (549)
T 3g7s_A 354 KSTTQGVPMSDIELKVISLEDGRELG---VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEG 430 (549)
T ss_dssp GTTSCCEECTTCEEEEECSSSCCEEC---TTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTS
T ss_pred cCCCccccCCCCEEEEEeCCCCcCCC---CCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCc
Confidence 35789999999999999988999887 568999999999999999999999999883 45778899999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++.+.... ..+
T Consensus 431 ~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~--------~~~----- 496 (549)
T 3g7s_A 431 FLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG--------KVD----- 496 (549)
T ss_dssp CEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT--------SCC-----
T ss_pred eEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC--------cCC-----
Confidence 99999999999997 79999999999999999999999999987653 48899998765210 000
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++|+++++ ..|+.|++|+.|++++++| +|++|||+|++|++++.+.
T Consensus 497 ----------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 497 ----------EEDIIEWVR-ERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp ----------HHHHHHHHH-TTCC-----CCCCEEEECC-------------------------
T ss_pred ----------HHHHHHHHH-HhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhcc
Confidence 467889998 8899999999999999999 9999999999999998753
No 5
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.3e-38 Score=282.47 Aligned_cols=185 Identities=28% Similarity=0.383 Sum_probs=163.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+|++++++++ +|+.|||+++||+++.|||++|+.|...| ..+| ||+|||+|++|++|+
T Consensus 360 ~~~~~G~~~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f-~~~g--~~~TGDl~~~~~dG~ 433 (548)
T 2d1s_A 360 KPGASGKVVPLFKAKVIDLDTKKSLG---PNRRGEVCVKGPMLMKGYVNNPEATKELI-DEEG--WLHTGDIGYYDEEKH 433 (548)
T ss_dssp CTTCCBEECTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTCHHHHHHHB-CTTS--CEEEEEEEEECTTCC
T ss_pred CCCCCCccCCCceEEEEeCCcCccCC---CCCCeEEEECCHHHhhhhcCChHHhhhcc-cCCc--EEEccCEEEEcCCCe
Confidence 46899999999999999988888887 56899999999999999999999999888 3577 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++...... +
T Consensus 434 l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~----------~------ 496 (548)
T 2d1s_A 434 FFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM----------T------ 496 (548)
T ss_dssp EEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC----------C------
T ss_pred EEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCC----------C------
Confidence 9999999999996 79999999999999999999999999977543 58899988754210 0
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCccee-EEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPN-AVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRM 225 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~ 225 (228)
.++|+++++ ..++.+++|+ .|++++++| +|++||++|++|+++|.+.|++|
T Consensus 497 ---------~~~l~~~~~-~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 497 ---------EKEVMDYVA-SQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp ---------HHHHHHHHH-TTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHSCC---
T ss_pred ---------HHHHHHHHH-HhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhhhhhcC
Confidence 467888888 8899999999 999999999 99999999999999999988875
No 6
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.6e-37 Score=272.48 Aligned_cols=185 Identities=28% Similarity=0.400 Sum_probs=162.5
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|+|+|+++++|+| +++++++ +|++|||+|+||+++.|||++|+.|...|...+|.+||+|||+|++ ++|+|
T Consensus 317 ~~~~G~~~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l 391 (511)
T 3e7w_A 317 SLPVGFAKPDMNIFIMD-EEGQPLP---EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQI 391 (511)
T ss_dssp SCCCBEECTTCEEEEEC-TTSCBCC---TTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEE
T ss_pred cCCCcceeCCCEEEEEC-CCCCCCC---CCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeE
Confidence 46799999999999999 7788887 5689999999999999999999999999876677778999999999 69999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++.+....
T Consensus 392 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~------------------ 452 (511)
T 3e7w_A 392 FCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFE------------------ 452 (511)
T ss_dssp EEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCS------------------
T ss_pred EEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccccc------------------
Confidence 999999999997 7999999999999999999999999987654 358999998765311
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
....+.+.|+++++ ..|+.|++|+.+++++++| +|++|||+|++|++++++.
T Consensus 453 ---~~~~~~~~l~~~l~-~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 453 ---KEFQLTSAIKKELA-ASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp ---SHHHHHHHHHHHHH-HHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHHH
T ss_pred ---chhhHHHHHHHHHH-hhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhhh
Confidence 01123567888888 7899999999999999999 9999999999999999763
No 7
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=8.8e-38 Score=276.84 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=157.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
..+++|+|+|+++++|+| +++++++ +|+.|||+++||+++.|||++|+.|.+.|...++.+||+|||+|++|++|+
T Consensus 320 ~~~~vG~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~ 395 (521)
T 3l8c_A 320 TRLPIGYPKPDSPTYIID-EDGKELS---SGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNI 395 (521)
T ss_dssp SSCEEEEECTTSCEEEEC-TTSCBCC---TTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSC
T ss_pred CccccccccCCCEEEEEC-CCcCCCC---CCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCe
Confidence 457899999999999999 7888887 568999999999999999999999999886444555999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC----CeEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK----DYTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
|+|.||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++.+....+
T Consensus 396 l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~--------------- 459 (521)
T 3l8c_A 396 LLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER--------------- 459 (521)
T ss_dssp EEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG---------------
T ss_pred EEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc---------------
Confidence 9999999999997 7999999999999999999999999986533 3488999987753210
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
......+.++|+++++ ..|+.|++|..|++++++| +|++|||+|++|+++|+++
T Consensus 460 ---~~~~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 460 ---FDRELELTKAIKASVK-DHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp ---CSSHHHHHHHHHHHSG-GGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC--
T ss_pred ---cccchhhHHHHHHHHH-hhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcC
Confidence 0001123678999998 8899999999999999999 9999999999999998764
No 8
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=7.6e-37 Score=270.36 Aligned_cols=186 Identities=24% Similarity=0.395 Sum_probs=161.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|.|+++++++|+| +++++++ +|+.|||+++||+++.|||++|+.|...|...+|.+||+|||+|++ ++|+
T Consensus 317 ~~~~~G~~~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~ 391 (512)
T 3fce_A 317 KSLPVGYCKSDCRLLIMK-EDGTIAP---DGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391 (512)
T ss_dssp SSCCCEEECTTCEEEEEC-SSSCBCC---TTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTE
T ss_pred CCCccccccCCcEEEEEC-CCCCCCC---CCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCE
Confidence 467899999999999999 8888887 5689999999999999999999999998854455569999999999 7999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+|++ +|++|+|.+||+.|.+||.|.+|+|++.++.. .++|+|++......
T Consensus 392 l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~----------------- 453 (512)
T 3fce_A 392 LFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE----------------- 453 (512)
T ss_dssp EEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCS-----------------
T ss_pred EEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcccc-----------------
Confidence 9999999999997 89999999999999999999999999876543 48899998764311
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
....+.+.|+++++ ..|+.|++|+.+++++++| +|++||++|++|+++|++.
T Consensus 454 ----~~~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 454 ----KEFKLTSAIKKELN-ERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp ----SHHHHHHHHHHHHH-TTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC-
T ss_pred ----chhhhHHHHHHHHH-hhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhhc
Confidence 01123567889998 8999999999999999999 9999999999999999753
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.3e-37 Score=277.72 Aligned_cols=181 Identities=26% Similarity=0.404 Sum_probs=141.9
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec-----CccCccccCCCccccccccccCCCeeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG-----SNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g-----p~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~ 76 (228)
+++++|+|+||++++|+| +++++++ +|+.|||+|+| ++++.|||++|+.|.+.|. +| ||+|||+|++
T Consensus 391 ~~~~~G~p~~~~~v~ivd-~~g~~~~---~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~--~g--wy~TGDlg~~ 462 (580)
T 3etc_A 391 KPGSIGKPTPGYKIELMD-RDGRLCE---VGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH--DG--YYHTGDMAWM 462 (580)
T ss_dssp CTTCCBEECTTCEEEEEC-TTSCBCC---TTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE--TT--EEEEEEEEEE
T ss_pred CCCccccCCCCCEEEEEC-CCCCCCC---CCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC--CC--EEecCcEEEE
Confidence 578999999999999999 6788887 56899999997 7899999999999999984 78 9999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
|++|+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .+.|+|++.+....
T Consensus 463 d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~------------ 529 (580)
T 3etc_A 463 DEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTP------------ 529 (580)
T ss_dssp CTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC------------
T ss_pred CCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCC------------
Confidence 999999999999999997 69999999999999999999999999977653 48899998765210
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+.++|+++++ ..+++|++|+.|++++++| +|++|||+|++|++++++
T Consensus 530 ----------~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 530 ----------SDSLKNELQDHVK-NVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp ----------CHHHHHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred ----------CHHHHHHHHHHHH-hhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhc
Confidence 0122577888888 7899999999999999999 999999999999999875
No 10
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=5.3e-37 Score=278.80 Aligned_cols=187 Identities=18% Similarity=0.279 Sum_probs=161.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+| +++++++ +|+.|||+|+| |+++.|||++++.+...++. .+| ||+|||+|++|+
T Consensus 433 ~~~s~G~p~~g~~v~i~d-~~g~~v~---~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g--~y~TGDlg~~d~ 506 (652)
T 1pg4_A 433 KAGSATRPFFGVQPALVD-NEGHPQE---GATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN--MYFSGDGARRDE 506 (652)
T ss_dssp CTTCCBSBCTTCCEEEEC-TTCCBCC---SSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT--SEEEEEEEEECT
T ss_pred cCCccccCcCCCeEEEEC-CCCCCcC---CCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC--EEECCcEEEEcC
Confidence 568999999999999999 7888887 46889999999 79999999999988877643 367 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++++....
T Consensus 507 dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~-------------- 571 (652)
T 1pg4_A 507 DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP-------------- 571 (652)
T ss_dssp TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC--------------
T ss_pred CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC--------------
Confidence 9999999999999997 7999999999999999999999999997654 349999998764210
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
...+.++|+++++ ..++++++|+.|++++++| +|++|||+|++|++++.+.+++
T Consensus 572 --------~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~ 625 (652)
T 1pg4_A 572 --------SPELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTSN 625 (652)
T ss_dssp --------CHHHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC---
T ss_pred --------CHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCCCCC
Confidence 0122567888888 7899999999999999999 9999999999999999876543
No 11
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4.6e-37 Score=274.91 Aligned_cols=178 Identities=28% Similarity=0.408 Sum_probs=156.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc---CCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~---~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+|+++++|+| +++++++ +|++|||+++||+++.|||++|+.|...|.+. +|.+||+|||+|++|+
T Consensus 344 ~~~~vG~p~~~~~v~i~d-~~~~~~~---~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~ 419 (563)
T 1amu_A 344 HSVPIGAPIQNTQIYIVD-ENLQLKS---VGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 419 (563)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCC---TTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred CCCcccceeCCCEEEEEC-CCcCCCC---CCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC
Confidence 356899999999999999 7888887 56899999999999999999999999888532 3456999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+|+|+||.||+|++ +|++|+|.+||+.|.+||.|.+|+|++.++. ..++|+|++.....
T Consensus 420 dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--------------- 483 (563)
T 1amu_A 420 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP--------------- 483 (563)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCC---------------
T ss_pred CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCC---------------
Confidence 9999999999999997 8999999999999999999999999987654 34888988764211
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERY 218 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~ 218 (228)
.++|+++++ ..|+.|++|+.|++++++| +|++||++|++|++.+
T Consensus 484 ------------~~~l~~~l~-~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 484 ------------LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp ------------HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred ------------HHHHHHHHH-hhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence 456788888 7899999999999999999 9999999999998653
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.8e-36 Score=267.62 Aligned_cols=177 Identities=25% Similarity=0.424 Sum_probs=156.9
Q ss_pred CCCCccCCCCCceEEEEeCCCC---CccccCCCCCCceEEEe-cCccCccccCCCccccccccccCCCeeeeeccEEEEe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEG---NYRVCDKPFPRGEILIG-GSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELH 77 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~---~~~~~~~~g~~Gel~i~-gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~ 77 (228)
+.+++|.|+++++++|++ +.+ +.++ +|+.|||+++ ||+++.|||++|+.|...| .+| ||+|||+|++|
T Consensus 319 ~~~~~g~p~~~~~~~i~~-~~~~~~~~~~---~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f--~~g--~~~TGDlg~~~ 390 (504)
T 1t5h_X 319 KTGTEMAPGFFSEVRIVR-IGGGVDEIVA---NGEEGELIVAASDSAFVGYLNQPQATAEKL--QDG--WYRTSDVAVWT 390 (504)
T ss_dssp SSSSEEBCCTTCCEEEEC-TTSCTTCBCC---TTCCEEEEEECCTTSCCCBTTCHHHHHHHE--ETT--EEEEEEEEEEC
T ss_pred CCCccccCCCCCceeEEe-ccCCCCCcCC---CCCcceEEEeCCceeeceecCCchhhhhhh--cCC--ccccCcEEEEC
Confidence 468899999999999999 555 6665 6789999999 9999999999999999988 478 99999999999
Q ss_pred eCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhh
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 154 (228)
++|+|+|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. ..++|+|++.+.... +
T Consensus 391 ~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~----------~-- 457 (504)
T 1t5h_X 391 PEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL----------S-- 457 (504)
T ss_dssp TTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCC----------C--
T ss_pred CCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCc----------C--
Confidence 99999999999999996 7999999999999999999999999998765 359999998764210 0
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhC-CCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKS-NLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
.++|+++++ . .|+.|++|+.|++++++| +|++|||+|++|+++|+
T Consensus 458 -------------~~~l~~~~~-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 -------------ADALDTFCR-SSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS 503 (504)
T ss_dssp -------------HHHHHHHHH-TSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred -------------HHHHHHHHh-hccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence 457888888 6 899999999999999999 99999999999999874
No 13
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.4e-37 Score=270.26 Aligned_cols=180 Identities=29% Similarity=0.474 Sum_probs=140.7
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+| +++++++..++|++|||+|+||+++.|||++|+.|...|. ++| ||+|||+|+++++|+
T Consensus 322 ~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~-~~g--~y~TGDl~~~~~dG~ 397 (505)
T 3nyq_A 322 RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT-EDG--FFRTGDMAVRDPDGY 397 (505)
T ss_dssp CTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC-TTS--CEEEEEEEEECTTSC
T ss_pred CCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc-CCC--CCccCCeEEECCCcc
Confidence 467999999999999999 7788887544578999999999999999999999999984 577 999999999999999
Q ss_pred EEEeccC-CCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 82 IRIIDRK-KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 82 l~~~GR~-~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
|+|+||. |++|++ +|++|+|.+||++|.+||+|.+|+|++.++.. .++|+|++...... ..
T Consensus 398 l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~---------~~----- 462 (505)
T 3nyq_A 398 VRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAP---------PA----- 462 (505)
T ss_dssp EEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSC---------CC-----
T ss_pred EEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCC---------CC-----
Confidence 9999998 588996 79999999999999999999999999876543 58999998753210 00
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++|+++++ +.|+.|++|+.|++++++| +|++||++|++|++.
T Consensus 463 ----------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 463 ----------LGTLADHVA-ARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNRD 505 (505)
T ss_dssp ----------HHHHHHHHH-HHTCGGGSCSEEEECSCCC------C--------------
T ss_pred ----------HHHHHHHHH-hhCCCCcCccEEEEECCCC------CCCCcCeeHHhhccC
Confidence 467888888 7899999999999999999 999999999999863
No 14
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=8.1e-37 Score=270.71 Aligned_cols=178 Identities=28% Similarity=0.517 Sum_probs=155.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|+|++++++++++ +++..++ +| .|||+|+||+++.|||++|+.|...| .+| ||+|||+|++|++|+
T Consensus 335 ~~~~~G~~~~~~~~~i~d-~~~~~~~---~g-~GEl~v~g~~v~~GY~~~p~~t~~~f--~~g--~~~TGDl~~~~~dG~ 405 (517)
T 3r44_A 335 KAGSAGRATMFTDVAVRG-DDGVIRE---HG-EGEVVIKSDILLKEYWNRPEATRDAF--DNG--WFRTGDIGEIDDEGY 405 (517)
T ss_dssp TTTCCBEECTTEEEEEEC-TTSCEES---SE-EEEEEEEETTSCSEETTCHHHHHHTE--ETT--EEEEEEEEEECTTSC
T ss_pred cCCCCCcCCCCeEEEEEC-CCCCCCC---CC-CeEEEEeCcchhhhhCCChhhhHhhh--cCC--CEecceeEEEcCCee
Confidence 468999999999999999 7777776 34 79999999999999999999999998 478 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||.+|.+||+|.+|+|++.++.. .++|+|........
T Consensus 406 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~----------------- 467 (517)
T 3r44_A 406 LYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVS----------------- 467 (517)
T ss_dssp EEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCC-----------------
T ss_pred EEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCC-----------------
Confidence 9999999999996 79999999999999999999999999876553 36666643322111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.++|+++++ ..|+.|++|+.|++++++| +|++||++|++|+++|.+.+
T Consensus 468 ---------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 468 ---------EQQIVEYCG-TRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp ---------HHHHHHHHH-HHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGGC
T ss_pred ---------HHHHHHHHH-HhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhhc
Confidence 467888888 7899999999999999999 99999999999999998754
No 15
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.1e-37 Score=273.96 Aligned_cols=181 Identities=30% Similarity=0.500 Sum_probs=124.1
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|+|+|+++++|+| +++++++.. .++.|||+++||+++.|||++|+.|...|. ++| ||+|||+|++|++|+|
T Consensus 354 ~~~~G~p~~~~~~~i~d-~~g~~~~~~-~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~-~~g--~~~TGDlg~~d~dG~l 428 (541)
T 1v25_A 354 KAKTGLPIPLVRLRVAD-EEGRPVPKD-GKALGEVQLKGPWITGGYYGNEEATRSALT-PDG--FFRTGDIAVWDEEGYV 428 (541)
T ss_dssp HTSCBEECTTCEEEEEC-TTSCBCCSS-SCCCEEEEEESTTSBSSCBTCHHHHHTTBC-TTS--CEEEEEEEEECTTCCE
T ss_pred cCCCCCcCCCcEEEEEC-CCCCCCCCC-CCcceEEEEeCcchhccccCChhhhhhhcc-CCC--CeEcCCEEEEcCCceE
Confidence 46899999999999999 778877632 236899999999999999999999999884 578 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++......
T Consensus 429 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~------------------ 489 (541)
T 1v25_A 429 EIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPT------------------ 489 (541)
T ss_dssp EEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------------
T ss_pred EEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCC------------------
Confidence 999999999995 8999999999999999999999999997765 358888887621110
Q ss_pred ChHHHHHHHHHHHHhhhhC-CCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKS-NLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~-~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.+++.++++ . .|+.|++|+.+++++++| +|++||++|++|+++|++.+
T Consensus 490 --------~~~l~~~~~-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 490 --------PEELNEHLL-KAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp --------------------CCCTTTSCSBC--------------------CCTTHHHHSTTSS
T ss_pred --------HHHHHHHHH-hccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHhh
Confidence 356777887 5 899999999999999999 99999999999999886543
No 16
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.5e-35 Score=265.49 Aligned_cols=183 Identities=25% Similarity=0.392 Sum_probs=160.1
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEe-----cCccCccccCCCccccccccccCCCeeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIG-----GSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~-----gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~ 76 (228)
+++++|+|+|+++++|+| +++++++ +|++|||+++ ||+++.|||++|+.|...|. +| ||+|||+|++
T Consensus 372 ~~~~vG~p~~~~~v~i~d-~~g~~~~---~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~--~~--~~~TGDlg~~ 443 (570)
T 3c5e_A 372 KPGYMGTAASCYDVQIID-DKGNVLP---PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR--GD--FWLLGDRGIK 443 (570)
T ss_dssp CTTCCCEECTTCCEEEEC-TTSCBCC---TTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE--TT--EEEEEEEEEE
T ss_pred CCCcccccCCCceEEEEC-CCCCCCC---CCCCCeeEEeccCCCCchhhccccCChhHhhhhhc--CC--ccccceeEEE
Confidence 468999999999999999 7788887 5689999999 99999999999999999884 67 9999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
|++|+|+|+||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++. ..++|+|++......
T Consensus 444 d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~------------ 510 (570)
T 3c5e_A 444 DEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS------------ 510 (570)
T ss_dssp CTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT------------
T ss_pred cCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC------------
Confidence 999999999999999996 7999999999999999999999999997654 348899998765310
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.....+.++|+++++ ..|+.|++|+.|++++++| +|++||++|++|++++.+
T Consensus 511 --------~~~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 511 --------HDPEQLTKELQQHVK-SVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp --------SCHHHHHHHHHHHHH-HHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHTC
T ss_pred --------cchHHHHHHHHHHHH-hhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHHh
Confidence 001123567888887 7899999999999999999 999999999999998854
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.9e-37 Score=275.02 Aligned_cols=179 Identities=27% Similarity=0.400 Sum_probs=72.7
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc-----CCCeeeeeccEEEEe
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE-----EGKRWFRTGDIGELH 77 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~-----~g~~~~~TGDl~~~~ 77 (228)
..++|+|+|+++++|+| +++++++ +|++|||+|+||+++.|||++|+.|.+.|..+ +|.+||+|||+|++|
T Consensus 382 ~~~iG~p~~~~~v~i~d-~~~~~~~---~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d 457 (570)
T 4gr5_A 382 ALPIGVPLAGKRAYVLD-DDLKPAA---NGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRR 457 (570)
T ss_dssp SCCCBEECTTEEEEEEC-TTSCBCC---TTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEEC
T ss_pred ccccceeeCCCEEEEEC-CCCCCCC---CCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEEC
Confidence 45799999999999999 7888887 56899999999999999999999999888532 345699999999999
Q ss_pred eCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhh
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 154 (228)
++|+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++......
T Consensus 458 ~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~------------- 523 (570)
T 4gr5_A 458 ADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP------------- 523 (570)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC-------------
Confidence 99999999999999997 8999999999999999999999999997654 348888887643211
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
...++|+++++ ..|+.|++|..+++++++| +|++|||+|++|++.
T Consensus 524 -----------~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 524 -----------PDAAELRRHVA-EALPAYMVPVECVPVDELP------RTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------------------------
T ss_pred -----------cCHHHHHHHHH-hhCccccCCcEEEEcccCC------CCCCcCcchHhhhcc
Confidence 01467888888 8899999999999999999 999999999999864
No 18
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=7.2e-37 Score=272.82 Aligned_cols=184 Identities=27% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+|++++++++ +|+.|||+|+||+++.|||++|+.|...| +.+| ||+|||+|++|++|+
T Consensus 358 ~~~~vG~~~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~~-~~~g--~~~TGDl~~~~~dG~ 431 (550)
T 3rix_A 358 KPGAVGKVVPFFEAKVVDLDTGKTLG---VNQRGELCVRGPMIMSGYVNNPEATNALI-DKDG--WLHSGDIAYWDEDEH 431 (550)
T ss_dssp CTTEEEEECTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTCHHHHHHHB-CTTS--CEEEEEEEEECTTCC
T ss_pred CCCCcccccCCcEEEEEeCCCCcCCC---CCCCeEEEEeCCCcchhhcCChhhhhhhc-CCCC--CeecCcEEEEeCCce
Confidence 56899999999999999988888887 56899999999999999999999998887 4578 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++.+....+
T Consensus 432 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~---------------- 494 (550)
T 3rix_A 432 FFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---------------- 494 (550)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCC----------------
Confidence 9999999999997 79999999999999999999999999987653 478888876543211
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcce-eEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIP-NAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p-~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
.++|.++++ ..++.+..| ..|++++++| +|++||++|++|++++.+....
T Consensus 495 ---------~~~l~~~~~-~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 495 ---------EKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp -------------------------------------------------------------------
T ss_pred ---------HHHHHHHHH-HhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHhhccc
Confidence 467788887 778877655 4699999999 9999999999999999876543
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.5e-36 Score=272.58 Aligned_cols=196 Identities=20% Similarity=0.287 Sum_probs=159.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+|++++++++. .|+.|||+++| |+++.|||++|+.+...|.. .+| ||+|||+|++|+
T Consensus 440 ~~gs~G~p~~g~~v~i~d~~~g~~v~~--~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g--~y~TGDlg~~d~ 515 (663)
T 1ry2_A 440 KPGSASFPFFGIDAVVLDPNTGEELNT--SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDK 515 (663)
T ss_dssp CTTCCCEECTTCCEEEECSSSTTCEEC--SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT--SEEEEEEEEECT
T ss_pred CCCccccCcCCCeEEEEcCCCCCcCCC--CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC--EEEcCCEEEEcC
Confidence 578999999999999999548888873 26789999999 68999999999998887754 367 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++++...... .
T Consensus 516 dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~-------~---- 583 (663)
T 1ry2_A 516 DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST-------A---- 583 (663)
T ss_dssp TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-------------------
T ss_pred CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc-------c----
Confidence 9999999999999997 6999999999999999999999999998764 35999999876531000 0
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
.+. ....+.++|+++++ +.++++++|..|++++++| +|++||++|++|++++.+++++
T Consensus 584 ---~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~ 641 (663)
T 1ry2_A 584 ---TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQ 641 (663)
T ss_dssp --------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC-----
T ss_pred ---cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcCCCCC
Confidence 000 00013567888888 7899999999999999999 9999999999999998776433
No 20
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.4e-36 Score=287.00 Aligned_cols=187 Identities=28% Similarity=0.416 Sum_probs=77.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|+|+|+++++|+|++++++++ +|++|||+|+||+++.|||++|+.|.+.| ..+| ||+|||+|+++++|+
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~---~g~~GEl~i~g~~v~~GY~~~p~~t~~~f-~~~g--~~~TGDl~~~~~dG~ 473 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLS---RNQPGEICIRGHQIMKGYLNNPAATAETI-DKDG--WLHTGDIGLIDDDDE 473 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCC---TTCCEEEEEESTTSCSEETTCHHHHHHHB-CTTS--CEEEEEEEEECTTSC
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCC---CCCccEEEEECCCccccccCChhhhhhhc-cCCC--cEEcCCEEEEcCCce
Confidence 46899999999999999988888887 56899999999999999999999999888 4677 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||.+|.+||.|.+++|++.++.. .++|+|++.+....+
T Consensus 474 l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~---------------- 536 (979)
T 3tsy_A 474 LFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELS---------------- 536 (979)
T ss_dssp EEEEEESCC-----------------------------------------------------------------------
T ss_pred EEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCC----------------
Confidence 9999999999997 79999999999999999999999999876543 488888876543111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhc
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~ 227 (228)
.++|+++++ ..|+.|++|..+++++++| +|++||++|++|+++|.+.+...|.
T Consensus 537 ---------~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~~ 589 (979)
T 3tsy_A 537 ---------EDDVKQFVS-KQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANGLGSGMA 589 (979)
T ss_dssp --------------------------------------------------------------------C
T ss_pred ---------HHHHHHHHH-HhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhhcCCccc
Confidence 467888888 8899999999999999999 9999999999999999988877664
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.1e-36 Score=269.22 Aligned_cols=178 Identities=29% Similarity=0.417 Sum_probs=72.2
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
+.++|+|+|+++++|+| +++++++ +|++|||+|+||+++.|||++|+.|...|. +| ||+|||+|+++++|+|
T Consensus 320 ~~~~G~p~~~~~~~i~d-~~~~~~~---~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~--~g--~~~TGDl~~~~~dG~l 391 (509)
T 3ivr_A 320 PKSAGRPLFWRTVAVVD-AEDRPLP---PGEVGEIVLRGPTVFKGYWNNAAATQHAFR--NG--WHHTGDMGRFDADGYL 391 (509)
T ss_dssp TTSCCEECTTCEEEEEC-TTSCBCC---TTCCEEEEEESTTSCCEETTCHHHHHHHTG--GG--SEEEEEEEEECTTSCE
T ss_pred CCcccccCCCcEEEEEC-CCCCCCC---CCCceEEEEecCCccccccCCHHHhHHHhh--cC--CcccccEEEECCCceE
Confidence 35689999999999999 6788887 568999999999999999999999999984 77 9999999999999999
Q ss_pred EEeccC--CCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 83 RIIDRK--KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 83 ~~~GR~--~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
+|+||. +|+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++.+....+
T Consensus 392 ~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~--------------- 455 (509)
T 3ivr_A 392 FYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIA--------------- 455 (509)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCC---------------
Confidence 999999 999996 79999999999999999999999999987653 378888876543211
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++|+++++ ..|+.|++|+.|++++++| +|++|||+|++|++++++.
T Consensus 456 ----------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 456 ----------ADALAEFVA-SLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------------------------------------------------------
T ss_pred ----------HHHHHHHHH-hhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHhhc
Confidence 467888888 8899999999999999999 9999999999999999764
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7e-35 Score=263.34 Aligned_cols=180 Identities=21% Similarity=0.359 Sum_probs=158.7
Q ss_pred CCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 4 GRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 4 ~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
+++|.|+ ++++++|+| +++++++ +|++|||+|+||++++|||++|+.|...|. ++| ||+|||+|+++++|.|
T Consensus 355 ~~~G~p~~~~~~~~i~d-~~~~~~p---~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~-~~~--~yrTGDl~~~~~dG~l 427 (617)
T 3rg2_A 355 HTQGYPMCPDDEVWVAD-AEGNPLP---QGEVGRLMTRGPYTFRGYYKSPQHNASAFD-ANG--FYCSGDLISIDPEGYI 427 (617)
T ss_dssp HCCCEESCTTCEEEEEC-TTSCBCC---TTCCEEEEEECSSSCSCCTTCHHHHHHHBC-TTS--CEEEEEEEEECTTSCE
T ss_pred cCCCccCCCCceEEEEC-CCCCCCC---CCCceEEEecCccccchhcCChhhhhhccC-CCC--ceecCceEEEcCCceE
Confidence 4789998 788999999 7888887 568999999999999999999999999983 577 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.||+||+ +|++|+|.+||.+|.+||.|.+|+|++.++. ..++|++++.....
T Consensus 428 ~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~------------------- 487 (617)
T 3rg2_A 428 TVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLR------------------- 487 (617)
T ss_dssp EEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCC-------------------
T ss_pred EEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCC-------------------
Confidence 999999999996 7999999999999999999999999987554 34888888865321
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
..++++++++..++.|++|..+++++++| +|++||++|++|++++.+....
T Consensus 488 --------~~~l~~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 488 --------AVQVRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp --------HHHHHHHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhccccc
Confidence 35677888733799999999999999999 9999999999999999876543
No 23
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.9e-36 Score=269.91 Aligned_cols=178 Identities=22% Similarity=0.390 Sum_probs=73.4
Q ss_pred CCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 4 GRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 4 ~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
+++|+|+ ++++++|+| +++++++ +|++|||+++||+++.|||++|+.|...| .++| ||+|||+|++|++|+|
T Consensus 360 ~~~G~p~~~~~~~~i~d-~~~~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f-~~~g--~~~TGDlg~~~~dG~l 432 (544)
T 3o83_A 360 TTQGRPISSDDEIKIVD-EQYREVP---EGEIGMLATRGPYTFCGYYQSPEHNSQVF-DEDN--YYYSGDLVQRTPDGNL 432 (544)
T ss_dssp HCCCEESCTTCEEEEEC-TTSCBCC---TTCCEEEEEECTTSCSCCTTCHHHHHHHB-CTTC--CEEEEEEEEECTTSCE
T ss_pred CCCceecCCCcEEEEEC-CCCCCCC---CCCeeEEEEecCCcchhhcCChhhhhhhC-CCCC--CeEcCCEEEEcCCCCE
Confidence 5799997 899999999 8888887 56899999999999999999999999988 3578 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++......
T Consensus 433 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~------------------ 493 (544)
T 3o83_A 433 RVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELK------------------ 493 (544)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCC------------------
Confidence 999999999995 79999999999999999999999999977653 47888887653211
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
...+++++++..++.|++|..|++++++| +|++||++|++|+++|.+.
T Consensus 494 --------~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 494 --------AVVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------------------------
T ss_pred --------HHHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhhc
Confidence 45677788723799999999999999999 9999999999999998763
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=6.1e-35 Score=259.13 Aligned_cols=178 Identities=25% Similarity=0.351 Sum_probs=152.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|+|+|+++++|+| +++++++ +|++|||+++||+++.|||++++.|...|. +| ||+|||+|+++++|+
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~--~~--~~~TGDl~~~~~~G~ 421 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGHAVP---DGEVGDLYIKGPSAAVMYWNNREKSRATFL--GE--WIRSGDKYCRLPNGC 421 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSCBCC---TTSCEEEEEECTTCCCCBTTCHHHHHHHEE--TT--EEEEEEEEEECTTSC
T ss_pred ccCCcccCCCCCEEEEEC-CCCCCCC---CCCccEEEEecCCcccccCCChHHHHHhhh--cC--CcccCceEEECCCcc
Confidence 467999999999999999 7888887 568999999999999999999999999885 77 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC--CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK--DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
|+|+||.||+|++ +|++|+|.+||+.|.+||+|.+|+|++.... ..++|+|++......
T Consensus 422 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~------------------ 482 (529)
T 2v7b_A 422 YVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAP------------------ 482 (529)
T ss_dssp EEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCC------------------
T ss_pred EEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCc------------------
Confidence 9999999999997 7999999999999999999999999987322 348899988754210
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
. ..+.++|+++++ ..|+.|++|+.+++++++| +|++||++|++|+++
T Consensus 483 -~---~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 483 -S---EILAEELKAFVK-DRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLREQ 529 (529)
T ss_dssp -C---HHHHHHHHHHHH-TTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC-
T ss_pred -c---hhHHHHHHHHHH-hhcchhhCCeEEEEeccCC------CCCccchhHHhHhhC
Confidence 0 011457888888 8999999999999999999 999999999999863
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.4e-34 Score=255.18 Aligned_cols=171 Identities=25% Similarity=0.416 Sum_probs=133.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+++++++|+|++ ++..|||+++||+++.|||++++.+.. | .+| ||+|||+|++|++|+
T Consensus 325 ~~~~~G~p~~~~~~~i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~--~~g--~~~TGDl~~~~~~G~ 390 (501)
T 3ipl_A 325 RPDTVGMPSANVDVKIKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F--ENG--YFNTGDIAEIDHEGY 390 (501)
T ss_dssp CTTCCBEECTTCEEEEESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E--ETT--EEEEEEEEEECTTSC
T ss_pred CCCCCCCCCCCcEEEEecCC---------CCCccEEEEeccchhhhhCcChhhcch-h--cCC--ceecCCEEEEcCCCe
Confidence 46899999999999999943 245799999999999999999999887 5 478 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+|++ +|++|+|.+||.+|.+||+|.+|+|++.++.. .+++++++.....
T Consensus 391 l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~------------------ 451 (501)
T 3ipl_A 391 VMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDIS------------------ 451 (501)
T ss_dssp EEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCC------------------
T ss_pred EEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCC------------------
Confidence 9999999999995 79999999999999999999999999876654 3778887644321
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++|+++++ ..|+.|++|..|++++++| +|++||++|++|++.+.++
T Consensus 452 ---------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 452 ---------KAQLIAYLS-KHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp ---------HHHHHHHHH-HHSCGGGSCSEEEECSSCC-------------------------
T ss_pred ---------HHHHHHHHH-hhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence 457788888 7799999999999999999 9999999999999988653
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=7.9e-35 Score=263.10 Aligned_cols=176 Identities=23% Similarity=0.341 Sum_probs=143.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCc-cccCCCCCCceEEEecCccCccccCCCcccccccccc--CCC--eeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNY-RVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE--EGK--RWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~-~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~--~g~--~~~~TGDl~~~ 76 (228)
..+++|+|+++++++|+| +++++ ++ +|++|||+|+||++++|||++|+.|++.|.+. .|. +||+|||+|++
T Consensus 331 ~~~~iG~p~~~~~~~i~d-~~~~~~~~---~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 331 DDIPIGKAIAGTAVLLLD-EHGQEIAE---PDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCCS---SSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCceecccCcEEEEEC-ccCCCCCC---CCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 356899999999999999 66666 44 57899999999999999999999999998642 222 69999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCe--EEEEEEeCchhHHHHHHHcCCCchhh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY--TVALVVPNPSRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~--~~a~v~~~~~~~~~~~~~~~~~~~~~ 154 (228)
++||+|+|+||.||+||+ +|++|+|.+||.+|.+||+|.+|+|++.++... ++++++.....
T Consensus 407 ~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~--------------- 470 (620)
T 4dg8_A 407 DEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA--------------- 470 (620)
T ss_dssp CTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC---------------
T ss_pred CCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH---------------
Confidence 999999999999999997 799999999999999999999999998765432 44444433221
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
+.+.++ +.|+.|++|..+++++++| +|++||++|++|+++|.+
T Consensus 471 ----------------~~~~l~-~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 471 ----------------SPQALL-RQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp ----------------CCHHHH-HHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCS
T ss_pred ----------------HHHHHH-HhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhcccc
Confidence 112333 4589999999999999999 999999999999987754
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.4e-35 Score=260.74 Aligned_cols=194 Identities=20% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
..+++|+|+++++++|++++++.+++ +|++|||+|+||+++.|||++|+.+...+. +|.+||+|||+|++|++|+
T Consensus 345 ~~~~~G~p~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~--~g~~w~~TGDlg~~d~dG~ 419 (562)
T 3ite_A 345 DTRCIGHPLGDSVAHVLAPGSNEHVK---KGMAGELVIEGSLVANGYLNRPDAKGFCDI--NGRKMYRTGDIVRMDADSS 419 (562)
T ss_dssp CTTEEEEECTTCEEEEECTTSSCBCC---TTSCEEEEEESTTSCCEESSCTTCCSEEEE--TTEEEEEEEEEEEECTTSC
T ss_pred CCccccccCCCCeEEEEeCCCCCCCC---CCCceEEEEeccccchhhCCCccccccccC--CCCEEEecCCEEEEcCCCe
Confidence 35689999999999999977777776 568999999999999999999999886654 5566999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcC-CCcceEEEEecCCCC---e-EEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTC-PVIENICVYGDSRKD---Y-TVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-~~v~~a~v~~~~~~~---~-~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|+|+||.||+|++ +|++|+|.+||++|.++ +.+.+++|++.++.. . +++++.......... ...
T Consensus 420 l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~ 488 (562)
T 3ite_A 420 ILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGE----------LRW 488 (562)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccccc----------ccc
Confidence 9999999999996 79999999999999998 788888888765442 2 444444332221100 000
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccC-ccccccHHHHHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVT-AAFKLKRKDIQERYQHE 221 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t-~~gKv~R~~l~~~~~~~ 221 (228)
..+....+.++|+++++ ..|+.|++|+.|++++++| +| ++||++|++|+++|++.
T Consensus 489 ---~~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 489 ---INENYKEINNSLRQACE-QTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ------------------------------------------------------------------
T ss_pred ---cccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHhcc
Confidence 00111223568999998 8899999999999999999 87 89999999999999763
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.6e-34 Score=276.36 Aligned_cols=176 Identities=23% Similarity=0.403 Sum_probs=156.2
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc---CCCeeeeeccEEEEeeC
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQD 79 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~---~g~~~~~TGDl~~~~~~ 79 (228)
..++|+|+++++++|+| ++++++| +|++|||+|+|+++++||+++|+.|++.|... +|.+||+|||+|++++|
T Consensus 776 ~~~iG~p~~~~~~~i~d-~~~~~~p---~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~d 851 (1304)
T 2vsq_A 776 SLPIGKPISNASVYILN-EQSQLQP---FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPD 851 (1304)
T ss_dssp SCCCBEECTTEEEEEEC-TTSCBCC---TTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTT
T ss_pred CCCCceeeCCCEEEEEC-CCcCCCC---CCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCC
Confidence 46899999999999999 7888887 56899999999999999999999999988642 46789999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|.|+|+||.|++||+ +|++|+|.+||.+|.+||+|.+|+|++.++. ..++|+|++.....
T Consensus 852 G~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~---------------- 914 (1304)
T 2vsq_A 852 GTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS---------------- 914 (1304)
T ss_dssp SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSC----------------
T ss_pred CeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCC----------------
Confidence 999999999999998 6999999999999999999999999987643 45999998765211
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++|+++++ ..||.|++|..+++++++| +|++|||+|++|.+.
T Consensus 915 -----------~~~l~~~l~-~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 915 -----------AEDVKAHLK-KQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKP 957 (1304)
T ss_dssp -----------HHHHHHHHH-HHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCC
T ss_pred -----------HHHHHHHHH-HhChHhhhccEEEEecccC------CCCCcccCHhhcCCc
Confidence 456888888 7899999999999999999 999999999988654
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.1e-33 Score=252.96 Aligned_cols=181 Identities=21% Similarity=0.279 Sum_probs=146.0
Q ss_pred CccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEE
Q psy8218 5 RAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRI 84 (228)
Q Consensus 5 s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~ 84 (228)
++|+|+|+++++|+| +++++++ +|++|||+|+||+++.|||++++.+...+ .+| ||+|||+|++ ++|+|+|
T Consensus 386 ~~G~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~~~~gY~~~~~~~~~~~--~~g--~~~TGDl~~~-~dG~l~~ 456 (576)
T 3gqw_A 386 NCGKALPEHGIEIRN-EAGMPVA---ERVVGHICISGPSLMSGYFGDQVSQDEIA--ATG--WLDTGDLGYL-LDGYLYV 456 (576)
T ss_dssp BCCEECTTCEEEEEC-TTSCBCC---TTBCEEEEEESTTSCCCBTTCHHHHHHHH--HHS--CEEEEEEEEE-ETTEEEE
T ss_pred ecCCcCCCCeEEEEC-CCCCCCC---CCCeEEEEEeCccccccccCCcccccccc--CCC--eeeccceEEE-ECCEEEE
Confidence 899999999999999 8899887 56899999999999999999998777654 478 9999999999 7999999
Q ss_pred eccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC-CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChHH
Q psy8218 85 IDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK-DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEI 163 (228)
Q Consensus 85 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
+||.||+||+ +|++|+|.+||.+|.+||.|.+++|++.... ....+++........ .
T Consensus 457 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~~~~~~~~---------------------~ 514 (576)
T 3gqw_A 457 TGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEE---------------------R 514 (576)
T ss_dssp EEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCEEEEEECCCCCHH---------------------H
T ss_pred EecCcceEEE-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccEEEEEEEecCchh---------------------H
Confidence 9999999997 7999999999999999999998766654333 334555544332111 1
Q ss_pred HHHHHHHHHHhhhhCCC-CCCcceeEEEEec--cCCCCCCCccCccccccHHHHHHHHHHHHHhHhc
Q psy8218 164 EKQVLVELQEHGKKSNL-ERFEIPNAVKLCS--EVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227 (228)
Q Consensus 164 ~~~~~~~l~~~~~~~~l-~~~~~p~~v~~v~--~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~ 227 (228)
.+++.+.+. ..+ +.+++|..+.+++ ++| +|++||++|++|+++|++.+.+.|.
T Consensus 515 ----~~~l~~~l~-~~l~~~~~~p~~i~~v~~~~lP------~t~~GKi~r~~l~~~~~~~~~~~~~ 570 (576)
T 3gqw_A 515 ----RGQLIHALA-ARIQSEFGVTAAIDLLPPHSIP------RTSSGKPARAEAKKRYQKAYAASLN 570 (576)
T ss_dssp ----HHHHHHHHH-HHHHHHHSCCEEEEEECSSCSC------BCTTSSBCHHHHHHHHHHHHTCC--
T ss_pred ----HHHHHHHHH-HHHHHHhCCceeEEEECCCCcC------cCCCccchHHHHHHHHHHHhhhccc
Confidence 233444443 333 5678899998887 899 9999999999999999998877653
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.97 E-value=5.2e-32 Score=242.91 Aligned_cols=181 Identities=18% Similarity=0.236 Sum_probs=140.1
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc-----CCCeeeeeccEEEEee
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE-----EGKRWFRTGDIGELHQ 78 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~-----~g~~~~~TGDl~~~~~ 78 (228)
+++|+|+++ ++|+|++++.+++ +|++|||+|+||+++.|||++|+.|+..|.+. +|.+||+|||+|++|
T Consensus 374 ~~~G~p~~~--v~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d- 447 (590)
T 3kxw_A 374 VSSGNPIQE--VKIIDPDTLIPCD---FDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH- 447 (590)
T ss_dssp ECCCEESSE--EEEECTTTCCBCC---TTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-
T ss_pred eccCCCCCC--eEEEcCCCCcCCC---CCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-
Confidence 688999999 8889976688887 56899999999999999999999999888531 255699999999998
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHH-hcCCCcc--eEEEEecCCC--CeEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAEL-KTCPVIE--NICVYGDSRK--DYTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~~~v~--~a~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
+|+|+|+||.||+||+ +|++|+|.+||.+| ..+|.|. +|+|++.++. ..+++++++......+
T Consensus 448 dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~----------- 515 (590)
T 3kxw_A 448 ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDD----------- 515 (590)
T ss_dssp TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTCCH-----------
T ss_pred CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccccc-----------
Confidence 9999999999999997 79999999999999 7889998 7888876543 3478888876542100
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCccee-EEEE--eccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPN-AVKL--CSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~v~~--v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+.+.+.+++.+. . .+++|. .+++ ++++| +|++|||+|++|+++|.+
T Consensus 516 --------~~~~~l~~~l~~~l~-~---~~~~p~~~i~~v~~~~lP------~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 516 --------VAQDNLFNEIFELVY-E---NHQLEVHTIVLIPLKAMP------HTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp --------HHHHHHHHHHHHHHH-H---HHSCCCCEEEEEETTCSC------CCSCHHHHHHHHHHHHHH
T ss_pred --------hhHHHHHHHHHHHHH-H---HcCCceeEEEEECCCccC------cCCCcHHHHHHHHHHHHc
Confidence 011222344444443 1 234443 3444 47999 999999999999999976
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.94 E-value=1.9e-27 Score=201.60 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=119.8
Q ss_pred CCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHH---
Q psy8218 33 PRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAEL--- 109 (228)
Q Consensus 33 ~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l--- 109 (228)
..|++++.+|++..+|.++++.........+| ||+|||+|++|++| |+|+||.||+|++ +|++|+|.+||+.|
T Consensus 197 ~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g--~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 197 EASELYVFLPGIQYGVDERGCLHISGAVTNGQ--TVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp TCCSCEEECTTCEEEECTTSEEEEESGGGTTC--CEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHH
T ss_pred ccceeeccCCCeEEEecCcCceEEecccccCc--ceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHh
Confidence 45666666676666666666655444444577 99999999999888 6778999999996 79999999999877
Q ss_pred hcCCCcceEEEE-ecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcc
Q psy8218 110 KTCPVIENICVY-GDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEI 185 (228)
Q Consensus 110 ~~~~~v~~a~v~-~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 185 (228)
.+||.|.+|+|+ +.++.. .++|+|+....... .++|+++++ ..|+.|++
T Consensus 273 ~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~--------------------------~~~l~~~l~-~~L~~~~~ 325 (358)
T 4gs5_A 273 FHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEAL--------------------------TERLTAEIR-SRVSTYEN 325 (358)
T ss_dssp HHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHH--------------------------HHHHHHHHH-HHSCGGGS
T ss_pred ccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcC--------------------------HHHHHHHHH-hhCCCCCC
Confidence 467999998876 454443 47888877654322 467888888 78999999
Q ss_pred eeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 186 PNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 186 p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
|+.|++++++| +|++|||+|++|++++.+.
T Consensus 326 P~~i~~v~~lP------~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 326 PKHIYFAKAFA------KTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp CSCEEEESSCC------BCTTSCBCHHHHHHHTC--
T ss_pred ceEEEEECCcC------CCCCCChhHHHHHHHhhhh
Confidence 99999999999 9999999999999988764
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.90 E-value=1.6e-24 Score=187.89 Aligned_cols=159 Identities=15% Similarity=0.069 Sum_probs=115.1
Q ss_pred CccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCC----
Q psy8218 5 RAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDG---- 80 (228)
Q Consensus 5 s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G---- 80 (228)
.+|.|.+++.++|+|++++++++ +|+.|||+++|+. ...+ +++ ||+|||+|+++++|
T Consensus 257 g~~~~~~~~~v~i~d~~~g~~~~---~g~~Gel~v~~~~------------~~~~--~~~--~y~TGDl~~~~~~gc~cG 317 (436)
T 3qov_A 257 GMHFWEDCYLVEIIDPETGEPVP---EGEIGELVLTTLD------------REMM--PLI--RYRTRDLTRILPGKCPCG 317 (436)
T ss_dssp SEEECTTTEEEEEECTTTCSBCS---TTCCEEEEEEESS------------CCSS--CCC--SEEEEEEECEECSCCTTC
T ss_pred eeEEccCceEEEEEECCCCCCCC---CCCceEEEEeccC------------cCCc--eEE--EEEcCCEEEEcCCCCCCC
Confidence 35677789999999988999887 5689999999842 2223 467 99999999999998
Q ss_pred --e---EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCC---CCeEEEEEEeCchhHHHHHHHcCCCch
Q psy8218 81 --V---IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR---KDYTVALVVPNPSRLKEIAEKLNLDSL 152 (228)
Q Consensus 81 --~---l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~ 152 (228)
+ ++|.||.+|+|++ +|++|+|.+||++|.+||.|.+++|++.++ ...++|+|++. ....
T Consensus 318 ~~~~~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~----------- 384 (436)
T 3qov_A 318 RTHLRIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLST----------- 384 (436)
T ss_dssp CCSCEECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCC-----------
T ss_pred CCccccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cccc-----------
Confidence 5 6999999999997 799999999999999999999999988654 24589999987 3210
Q ss_pred hhHhhcCChHHHHHHHHHHHHhhhhCCCCCC-cceeEEEEec--cCCCCCCCccCccccccHHH
Q psy8218 153 TFQQLCTHPEIEKQVLVELQEHGKKSNLERF-EIPNAVKLCS--EVWSPDMGLVTAAFKLKRKD 213 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~v~~v~--~~p~~~~g~~t~~gKv~R~~ 213 (228)
.+....+.+.+.+++.+ +.+ ++|..+++++ ++| +|+ ||++|..
T Consensus 385 ------~~~~~~~~l~~~l~~~l-----~~~~~~p~~i~~v~~~~lP------~t~-GKi~R~~ 430 (436)
T 3qov_A 385 ------DNYIELEKIRRDIIRQL-----KDEILVTPKVKLVKKGSLP------QSE-GKAVRVK 430 (436)
T ss_dssp ------CCHHHHHHHHHHHHHHH-----HHHHSSCCEEEEECTTCCC--------------CEE
T ss_pred ------cchhhHHHHHHHHHHHH-----HHhcCCceEEEEeCCCccc------CcC-CcceEEE
Confidence 00001122233444443 334 6777899998 999 899 9999853
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.90 E-value=6.7e-25 Score=190.59 Aligned_cols=162 Identities=17% Similarity=0.110 Sum_probs=121.8
Q ss_pred ccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeC-CeE--
Q psy8218 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD-GVI-- 82 (228)
Q Consensus 6 ~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~-G~l-- 82 (228)
++.|.+++.++|+|++++++++ +|+.|||+++|. +...| +++ ||+|||+|+++++ |++
T Consensus 265 ~~~~~~~~~~~i~d~~~g~~~~---~G~~Gel~v~~~------------t~~~~--p~~--~y~TGDl~~~~~~cG~~~~ 325 (443)
T 2y4o_A 265 PVIWEDHFYPEIIDPVTGEVLP---DGSQGELVFTSL------------TKEAM--PVI--RYRTRDLTALLPPTARAMR 325 (443)
T ss_dssp EEECTTTEEEEEECTTTCCBCC---TTCCEEEEEEES------------SCSSS--CCS--SEEEEEEECEECCSSSSSC
T ss_pred eEEccCCeEEEEEcCCCCCCCC---CCCceEEEEeCC------------CcccC--hhh--eeecCCEEEEcCCCCCCcc
Confidence 4456789999999977888887 568999999973 22223 356 9999999999999 987
Q ss_pred ---EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCC---CCeEEEEEEeCc--hhHHHHHHHcCCCchhh
Q psy8218 83 ---RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR---KDYTVALVVPNP--SRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 83 ---~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~ 154 (228)
+|+||.+|+|++ +|++|+|.+||++|.+||.|.++++++.++ ...+.|+|++.+ ....
T Consensus 326 ~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~------------- 391 (443)
T 2y4o_A 326 RLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASV------------- 391 (443)
T ss_dssp EECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTC-------------
T ss_pred ccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccc-------------
Confidence 899999999997 799999999999999999999988877532 245889998876 2100
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhCCCCCC-cceeEEEEe--ccCCCCCCCccCccccccHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKSNLERF-EIPNAVKLC--SEVWSPDMGLVTAAFKLKRKDIQE 216 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~v~~v--~~~p~~~~g~~t~~gKv~R~~l~~ 216 (228)
.... .+++.++++ ..++.+ .+|..|.++ +++| +|++||++|...++
T Consensus 392 -----~~~~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 392 -----TDGE----RAALARELQ-HRIKTMVGVSSGVTVLAAGGIP------ATATGKARRVIDRR 440 (443)
T ss_dssp -----CHHH----HHHHHHHHH-HHHHHHTCCCCEEEEECTTCSC------CCTTSCCCSEEECC
T ss_pred -----hhhH----HHHHHHHHH-HHHHHHhCCceEEEEeCCCccc------CccCCcceEEEecc
Confidence 0000 233444444 444444 477788887 5899 99999999975443
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.89 E-value=1.4e-23 Score=182.02 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=120.5
Q ss_pred ccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee-CCeE--
Q psy8218 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ-DGVI-- 82 (228)
Q Consensus 6 ~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~-~G~l-- 82 (228)
++.|.+++.++|+|++++++++ +|+.|||+++|. +...+ +++ ||+|||+|++++ +|++
T Consensus 263 ~~~~~~~~~~~i~d~~~g~~~~---~g~~Gel~v~~~------------t~~~~--~~~--~y~TGDl~~~~~~~G~~~~ 323 (437)
T 2y27_A 263 PTIWEDHFYPEIIDPETGEVLP---DGELGELVFTSL------------TKEAL--PII--RYRTRDLTRLLPGTARTMR 323 (437)
T ss_dssp CEECTTTEEEEEECTTTCCBCC---TTCCEEEEEEES------------SCSSS--CCC--SEEEEEEECEECCSSSSSC
T ss_pred eeEccCceEEEEEcCCCCCCCC---CCCccEEEEecC------------CcCCc--hhh--eeecCCEEEEeCCCCCCcc
Confidence 5567789999999987888887 568999999973 22233 467 999999999998 6985
Q ss_pred ---EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCC---CCeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 83 ---RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR---KDYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 83 ---~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
+|.||.+|+|++ +|++|+|.+||++|.+||.|.++++++.++ ...++|+|++.+....+
T Consensus 324 ~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~-------------- 388 (437)
T 2y27_A 324 RMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPD-------------- 388 (437)
T ss_dssp EECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTC--------------
T ss_pred ccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccch--------------
Confidence 999999999997 799999999999999999999888777432 24589999887642100
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCC-cceeEEEEe--ccCCCCCCCccCccccccHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERF-EIPNAVKLC--SEVWSPDMGLVTAAFKLKRKD 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~v~~v--~~~p~~~~g~~t~~gKv~R~~ 213 (228)
... .+++.++++ ..++.+ .+|..|.++ +++| +|+ ||++|..
T Consensus 389 ----~~~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~-GKi~r~~ 432 (437)
T 2y27_A 389 ----TAA----IQVAKQALA-YDIKSLIGVTAVINVLPVNGIE------RSV-GKARRVV 432 (437)
T ss_dssp ----HHH----HHHHHHHHH-HHHHHHHCCCEEEEECCTTCSC------CCS-SSCCCEE
T ss_pred ----hhh----HHHHHHHHH-HHHHHhcCCceEEEEeCCCCcc------CCC-CcceEEE
Confidence 000 234444454 445555 478888888 4899 888 9999864
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.70 E-value=5.5e-18 Score=148.05 Aligned_cols=79 Identities=32% Similarity=0.467 Sum_probs=68.0
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccc--------ccCCCeeeeeccEEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF--------DEEGKRWFRTGDIGE 75 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~--------~~~g~~~~~TGDl~~ 75 (228)
+++|+|+| ++++|+|++++++++ +|++|||+|+||+++.|||++|+.|++.|. ..++.+||+|||+|+
T Consensus 394 ~~~G~p~~-~~~~ivd~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~ 469 (480)
T 3t5a_A 394 ISYMLPRS-PIVRIVDSDTCIECP---DGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGF 469 (480)
T ss_dssp ECEECCSS-SEEEEEETTTTEECC---TTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEE
T ss_pred eecCcccC-CEEEEEcCCCCcCCC---CCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceee
Confidence 48999999 999999966688887 568999999999999999999999998883 111334999999999
Q ss_pred EeeCCeEEEecc
Q psy8218 76 LHQDGVIRIIDR 87 (228)
Q Consensus 76 ~~~~G~l~~~GR 87 (228)
++ ||+|+|+||
T Consensus 470 ~d-dG~l~~~GR 480 (480)
T 3t5a_A 470 VT-DGKMFIIGR 480 (480)
T ss_dssp EE-TTEEEECC-
T ss_pred EE-CCEEEEeCC
Confidence 96 999999998
No 36
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.44 E-value=2.1e-13 Score=95.83 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=63.9
Q ss_pred ccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChH
Q psy8218 86 DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPE 162 (228)
Q Consensus 86 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
.|+||+|++ +|.+|+|.+||++|.+||+|.++++++.++.. .+.++|+..+.... +..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~------------------~~~ 61 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTD------------------DYG 61 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCC------------------CHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccc------------------ccc
Confidence 489999997 79999999999999999999999888865443 37888887654211 112
Q ss_pred HHHHHHHHHHHhhhhCCCCCCcceeEEEEe--ccCCCCCCCccCccccccH
Q psy8218 163 IEKQVLVELQEHGKKSNLERFEIPNAVKLC--SEVWSPDMGLVTAAFKLKR 211 (228)
Q Consensus 163 ~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v--~~~p~~~~g~~t~~gKv~R 211 (228)
..+.+.+.+++.++ ..+ .++..+.++ +.+| +| +||++|
T Consensus 62 ~~~~l~~~i~~~l~-~~~---gv~~~v~~v~~~~lP------rt-sGKi~R 101 (109)
T 3lax_A 62 RLQALTREITRQLK-DEI---LVTPRVKLVPKGALP------KS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHHHH-HHH---SSCCEEEEECTTCSC------CC----CCC
T ss_pred hhhhhHHHHHHHHH-HHh---CCccceEEEcCCeec------CC-CCCcch
Confidence 22334555666554 222 123345666 4799 87 699988
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.34 E-value=2.1e-12 Score=90.70 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=63.1
Q ss_pred ccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChH
Q psy8218 86 DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPE 162 (228)
Q Consensus 86 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
||.+|+|++ +|.+|+|.+||++|.+||+|.++++++.++. ..+.++|++ +.... ....
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~-----------------~~~~ 61 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFT-----------------DDYG 61 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCC-----------------CCHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccc-----------------cchh
Confidence 799999997 7999999999999999999997776654432 348888887 43100 0001
Q ss_pred HHHHHHHHHHHhhhhCCCCCCcceeEEEEec--cCCCCCCCccCccccccHH
Q psy8218 163 IEKQVLVELQEHGKKSNLERFEIPNAVKLCS--EVWSPDMGLVTAAFKLKRK 212 (228)
Q Consensus 163 ~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~--~~p~~~~g~~t~~gKv~R~ 212 (228)
..+.+.+.+++.++ ..+. ++..+.+++ .+| +| +||++|.
T Consensus 62 ~~~~l~~~i~~~l~-~~~~---~~~~v~~v~~~~lP------rt-sGKi~R~ 102 (109)
T 3gxs_A 62 RLQALTREITRQLK-DEIL---VTPRVKLVPKGALP------KS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHH-HHHS---SCCEEEEECTTCSC------CC----CCCE
T ss_pred HHHHHHHHHHHHHH-HhhC---CceEEEEECCCCcc------CC-CCceEEE
Confidence 11233455666554 2222 223677887 899 89 9999874
No 38
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=97.90 E-value=1.7e-05 Score=66.59 Aligned_cols=72 Identities=11% Similarity=0.029 Sum_probs=45.0
Q ss_pred CccCC------CCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee
Q psy8218 5 RAGAP------TTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 5 s~G~p------lpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~ 78 (228)
++|.| +|+++++|+|++++++++ +|++|||+|++..-.. - +. .|+|||++++.+
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp---~G~~GEl~vt~l~~~~----------~-l~------ry~tgD~~~~~~ 340 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVE---YGERGNVIVTHLSPWA----------F-YP------RVAERDTAIRLP 340 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCC---TTCEEEEEEEEEETTE----------E-EE------EEEEEEEEEEEC
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCC---CCCceEEEEEEcCccc----------c-cc------cccCCceEEEec
Confidence 48999 999999999966899887 5689999998732110 0 11 688888888754
Q ss_pred C--C-------eEEEeccCCCeEEccCc
Q psy8218 79 D--G-------VIRIIDRKKDLVKLQAG 97 (228)
Q Consensus 79 ~--G-------~l~~~GR~~d~i~~~~G 97 (228)
. | .+..++|.++..++. |
T Consensus 341 ~~~g~~~d~~~~v~~~~~~~~~~~i~-g 367 (369)
T 3hgu_A 341 GVSGFAGDRLADIEPLKISEGRKVIE-G 367 (369)
T ss_dssp CSTTCSSCEEEEEEECC-----------
T ss_pred CCCCCcCcccccceeccccCCCceee-e
Confidence 3 2 355667777766663 5
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.09 E-value=0.00052 Score=61.01 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee----CCeEEEeccCCCeEEccCceEechHH
Q psy8218 29 DKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ----DGVIRIIDRKKDLVKLQAGEYVSLGK 104 (228)
Q Consensus 29 ~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~~v~~~~ 104 (228)
.+.|+.+||+|+..+ |.| -|++||+++... ...+.|+||.++++.+ .|+++...+
T Consensus 381 Ve~G~~YelViTt~~---GL~-----------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~~ 439 (581)
T 4eql_A 381 VKLGCTYEPVVTNFA---GLY-----------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEED 439 (581)
T ss_dssp CCTTCEEEEEEECSS---SCC-----------------SEECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHHH
T ss_pred cCCCceEEEEEeecc---cee-----------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHHH
Confidence 357788889887542 222 489999999975 3579999999999997 699999999
Q ss_pred HHHHHhcC
Q psy8218 105 VEAELKTC 112 (228)
Q Consensus 105 iE~~l~~~ 112 (228)
||+++.+.
T Consensus 440 v~~al~~a 447 (581)
T 4eql_A 440 LFKAVSQA 447 (581)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99999864
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.08 E-value=0.00038 Score=62.10 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=51.4
Q ss_pred CCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee----CCeEEEeccCCCeEEccCceEechHH
Q psy8218 29 DKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ----DGVIRIIDRKKDLVKLQAGEYVSLGK 104 (228)
Q Consensus 29 ~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~~v~~~~ 104 (228)
.+.|+.+||+|+..+ |+| -|++||+++++. ...+.|+||.++++.+ .|+++.+.+
T Consensus 393 Ve~G~~YelViTt~~---GL~-----------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~Geki~~~~ 451 (609)
T 4b2g_A 393 VEVGKEYELVITTYA---GLY-----------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-DSDKTDEAE 451 (609)
T ss_dssp CCTTCEEEEEEECTT---SCC-----------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHH
T ss_pred cCCCCeEEEehhhhh---hhh-----------------heecCCEEEEeecCCCCcEEEEEEecCCeEEc-cccCCCHHH
Confidence 467889999996532 443 389999999974 3689999999999997 699999999
Q ss_pred HHHHHhc
Q psy8218 105 VEAELKT 111 (228)
Q Consensus 105 iE~~l~~ 111 (228)
||+++.+
T Consensus 452 v~~av~~ 458 (609)
T 4b2g_A 452 LQKAVDN 458 (609)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0013 Score=58.37 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=50.8
Q ss_pred CCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeC----CeEEEeccCCCeEEccCceEechHH
Q psy8218 29 DKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD----GVIRIIDRKKDLVKLQAGEYVSLGK 104 (228)
Q Consensus 29 ~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~----G~l~~~GR~~d~i~~~~G~~v~~~~ 104 (228)
.+.|+.+||+|+..+ |.| -|++||+++...- ..+.|+||.++++.+ .|+++...+
T Consensus 388 ve~G~~YelviTt~~---GL~-----------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~Ge~~~~~~ 446 (581)
T 4epl_A 388 VKIGEEYEVVITNYA---GLY-----------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NIDKNTERD 446 (581)
T ss_dssp CCTTCEEEEEEESTT---SCS-----------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHH
T ss_pred cCCCCeEEEEEeecc---cee-----------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEe-eeeECCHHH
Confidence 457888999997642 322 4899999998742 479999999999997 699999999
Q ss_pred HHHHHhc
Q psy8218 105 VEAELKT 111 (228)
Q Consensus 105 iE~~l~~ 111 (228)
||.++.+
T Consensus 447 v~~al~~ 453 (581)
T 4epl_A 447 LQLSVES 453 (581)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999975
No 42
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=82.55 E-value=0.59 Score=38.62 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=29.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNP 52 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~ 52 (228)
..+++|.++||+.+.+.+ .|||+++|+....+|+.-.
T Consensus 197 ~~g~~~~~~pgv~~~~~~--------------~Gel~~~g~~~~~g~~~TG 233 (358)
T 4gs5_A 197 EASELYVFLPGIQYGVDE--------------RGCLHISGAVTNGQTVQTN 233 (358)
T ss_dssp TCCSCEEECTTCEEEECT--------------TSEEEEESGGGTTCCEEEE
T ss_pred ccceeeccCCCeEEEecC--------------cCceEEecccccCcceecC
Confidence 357889999999888744 6999999998887877543
No 43
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=37.05 E-value=46 Score=21.87 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCCCceEEEEeCCCCCc----cccCCCCCCceEEEecCcc
Q psy8218 9 PTTVCDIRLVDWDEGNY----RVCDKPFPRGEILIGGSNI 44 (228)
Q Consensus 9 plpg~~~~i~~~~~~~~----~~~~~~g~~Gel~i~gp~~ 44 (228)
-+|+-++.|+|..+|.. +..++. .|+|++.|...
T Consensus 13 il~~E~V~IvNvnNG~RfeTYvI~Ger--SG~I~lNGAAA 50 (97)
T 1uhe_A 13 LREGMKVEIVDVNNGERFSTYVILGKK--RGEICVNGAAA 50 (97)
T ss_dssp CCTTCEEEEEETTTCCEEEEECEEECS--TTCEEEEGGGG
T ss_pred CCCCCEEEEEECCCCceEEEEEEeecc--CCeEEEchHHH
Confidence 46889999999888874 343433 79999988653
No 44
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=25.08 E-value=1.2e+02 Score=18.44 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=24.2
Q ss_pred hHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeC
Q psy8218 102 LGKVEAELKTCPVIENICVYGDSRKDYTVALVVPN 136 (228)
Q Consensus 102 ~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~ 136 (228)
...+++.|.+.|.|.+|..+..+ ...++-+...+
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d 48 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDT 48 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESS
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECC
Confidence 47899999999999999987643 34444444443
No 45
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=23.14 E-value=1.1e+02 Score=20.29 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=24.6
Q ss_pred CCCCceEEEEeCCCCCc----cccCCCCCCceEEEecCcc
Q psy8218 9 PTTVCDIRLVDWDEGNY----RVCDKPFPRGEILIGGSNI 44 (228)
Q Consensus 9 plpg~~~~i~~~~~~~~----~~~~~~g~~Gel~i~gp~~ 44 (228)
-+|+-++.|+|..+|.. +..++ -.|+|++.|...
T Consensus 14 i~~~E~V~I~NvnNG~Rf~TYvI~Ge--GSG~I~lNGAAA 51 (102)
T 3plx_B 14 ILEYEKVQVVNVNNGARFETYTIATQ--EEGVVCLNGAAA 51 (102)
T ss_dssp CCTTCEEEEEETTTCCEEEEECEEES--STTCEEEEGGGG
T ss_pred CCCCCEEEEEECCCCcEEEEEEEEcC--CCCEEEeCcHHH
Confidence 46888999999888874 33343 468899988653
No 46
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.60 E-value=1.4e+02 Score=17.89 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.2
Q ss_pred hHHHHHHHhcCCCcceEEEEecC
Q psy8218 102 LGKVEAELKTCPVIENICVYGDS 124 (228)
Q Consensus 102 ~~~iE~~l~~~~~v~~a~v~~~~ 124 (228)
...+++.+.++|.|.+|..+..+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~ 37 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGV 37 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSS
T ss_pred HHHHHHHHhCCCCeEEEEEEecc
Confidence 36889999999999999887643
No 47
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=20.12 E-value=1.7e+02 Score=18.17 Aligned_cols=35 Identities=6% Similarity=0.146 Sum_probs=24.6
Q ss_pred hHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCc
Q psy8218 102 LGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNP 137 (228)
Q Consensus 102 ~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~ 137 (228)
..++++.+.++|.|.+|..+..+ ...++-+...+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~D~ll~v~~~d~ 49 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP-YDLVALVRLKDV 49 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS-SSEEEEEEESSG
T ss_pred HHHHHHHHhcCCCeEEEEEeecC-CCEEEEEEECCH
Confidence 57889999999999999988643 344444444433
No 48
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=20.08 E-value=1.5e+02 Score=19.34 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=24.5
Q ss_pred CCCCceEEEEeCCCCCcc----ccCCCCCCceEEEecCcc
Q psy8218 9 PTTVCDIRLVDWDEGNYR----VCDKPFPRGEILIGGSNI 44 (228)
Q Consensus 9 plpg~~~~i~~~~~~~~~----~~~~~g~~Gel~i~gp~~ 44 (228)
-+|+-++.|+|..+|... ..++. -.|+|++.|...
T Consensus 14 i~~~E~V~IvNvnNG~Rf~TYvI~Ger-GSG~I~lNGAAA 52 (96)
T 1vc3_B 14 ILPFEQVDIYDITNGARLTTYALPGER-GSGVIGINGAAA 52 (96)
T ss_dssp CCTTCEEEEEETTTCCEEEEECEEECT-TTTCEEEEGGGG
T ss_pred CCCCCEEEEEECCCCceEEEEEEEccC-CCCeEEEchHHH
Confidence 468889999998888743 33322 358899988653
Done!