RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8218
(228 letters)
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 117 bits (294), Expect = 3e-31
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 41/220 (18%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
+ G P + +R+ D +EG V GE+ + G I+ GYY N T+ +
Sbjct: 348 AKTGLPIPLVRLRVAD-EEGR-PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD- 404
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
+FRTGDI ++G + I DR KDL+K GE++S +E L P ++ V
Sbjct: 405 --GFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAVVAI 461
Query: 123 --DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
++ +A+VVP EK EL EH K+
Sbjct: 462 PHPKWQERPLAVVVPRG--------------------------EKPTPEELNEHLLKAGF 495
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220
++++P+A E+ P T+A K ++ ++E+Y++
Sbjct: 496 AKWQLPDAYVFAEEI--P----RTSAGKFLKRALREQYKN 529
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 106 bits (264), Expect = 5e-27
Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 31/230 (13%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS--NISPGYYKNPTKTKED 58
M G A P D ++D + G + G + + + + + +KN + +
Sbjct: 416 MKPGSASFPFFGIDAVVLDPNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDT 473
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+ + ++ TGD +DG I I+ R D+V + G +S ++EA + P++
Sbjct: 474 YLNPYP-GYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAEC 531
Query: 119 CVYG---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHG 175
V G D A VV A L +I+K ++ +++
Sbjct: 532 AVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQ-----------DIKKHLVFTVRKD- 579
Query: 176 KKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRM 225
+ F P + L ++ P T + K+ R+ +++ E +++
Sbjct: 580 ----IGPFAAPKLIILVDDL--P----KTRSGKIMRRILRKILAGESDQL 619
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 104 bits (259), Expect = 2e-26
Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 41/216 (18%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G + ++VD D G ++ GE+ + G I GY NP T D++
Sbjct: 357 GAVGKVVPFFEAKVVDLDTGKTLGVNQR---GELCVRGPMIMSGYVNNPEATNA-LIDKD 412
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
G W +GDI +D I+DR K L+K G V+ ++E+ L P I + V G
Sbjct: 413 G--WLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGL 469
Query: 123 --DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
D + A+VV K + EK E+ ++
Sbjct: 470 PDDDAGELPAAVVVLEHG--KTMTEK-----------------------EIVDYVASQVT 504
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216
++ V EV P KL + I+E
Sbjct: 505 TAKKLRGGVVFVDEV--P----KGLTGKLDARKIRE 534
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 102 bits (256), Expect = 8e-26
Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 46/230 (20%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGS--NISPGYYKNPTKTKED 58
G A P LVD +EG+ P G ++I S + + + + ++
Sbjct: 431 GSATRPFFGVQPALVD-NEGH------PQEGATEGNLVITDSWPGQARTLFGDHERFEQT 483
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+F K + +GD +DG I R D++ + +G + ++E+ L P I
Sbjct: 484 YF-STFKNMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEA 541
Query: 119 CVYG---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHG 175
V G + A V N E ++ E++
Sbjct: 542 AVVGIPHAIKGQAIYAYVTLNHGE----------------------EPSPELYAEVRNWV 579
Query: 176 KKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRM 225
+K + P+ + + P T + K+ R+ +++ + + +
Sbjct: 580 RK-EIGPLATPDVLHWTDSL--P----KTRSGKIMRRILRKIAAGDTSNL 622
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 93.8 bits (232), Expect = 9e-23
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 45/221 (20%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
+ GAP + + ++ DE GE+ IGG ++ GY+K P T + F D
Sbjct: 328 HSVPIGAP--IQNTQIYIVDENLQLK--SVGEAGELCIGGEGLARGYWKRPELTSQKFVD 383
Query: 62 ---EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
G++ ++TGD DG I + R + VK+ G V L +VE+ L I
Sbjct: 384 NPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISET 442
Query: 119 CVYG---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHG 175
V + Y A V E +L++
Sbjct: 443 AVSVHKDHQEQPYLCAYFVSEKHIPLE---------------------------QLRQFS 475
Query: 176 KKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216
+ L + IP+ ++ P +T+ K+ RK + E
Sbjct: 476 SE-ELPTYMIPSYFIQLDKM--P----LTSNGKIDRKQLPE 509
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 90.1 bits (222), Expect = 2e-21
Identities = 47/221 (21%), Positives = 76/221 (34%), Gaps = 39/221 (17%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
TG AP ++R+V G + I+ + GY P T E
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
D W+RT D+ +G +RI+ R D++ GE + ++E L T P + + V
Sbjct: 378 D----GWYRTSDVAVWTPEGTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVV 432
Query: 121 YG---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKK 177
G A VVP E L+ D L +
Sbjct: 433 IGLADQRWGQSVTACVVPRLG------ETLSAD-------------------ALDTFCRS 467
Query: 178 SNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERY 218
S L F+ P + ++ P A K+ R+ + ++
Sbjct: 468 SELADFKRPKRYFILDQL--P----KNALNKVLRRQLVQQV 502
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 83.9 bits (206), Expect = 2e-19
Identities = 47/223 (21%), Positives = 77/223 (34%), Gaps = 42/223 (18%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
G P + D V D KP G +L G GYYK F +
Sbjct: 350 VNTQGKPMSPYDESRVWDDHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTE- 405
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
++RTGDI L +DG I + R KD + GE V+ +VE L P + + +
Sbjct: 406 --DGFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVS 462
Query: 123 ---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSN 179
+ + ++P K EL+ ++
Sbjct: 463 MPDQFLGERSCVFIIPRDEAPKA--------------------------AELKAFLRERG 496
Query: 180 LERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222
L ++IP+ V+ P T K+ +K ++E ++
Sbjct: 497 LAAYKIPDRVEFVESF--P----QTGVGKVSKKALREAISEKL 533
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 27.5 bits (60), Expect = 1.3
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 10 TTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYY-----KNPTKTKED 58
VC RL D N + ++ +I + + + +
Sbjct: 407 GLVC-FRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGH 459
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
catalytic C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 27.0 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 25 YRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
V K +P G IL G S + + +DF
Sbjct: 123 VTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFL 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.411
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 925,336
Number of extensions: 46099
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 11
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)