BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy822
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X4V|A Chain A, Solution Structure Of The Zf-An1 Domain From Human
           Hypothetical Protein Loc130617
          Length = 63

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 93  RKIFTNKCSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKCEGQ 137
           RKIFTNKC    C+ +E++ + C +C+ NFC+KHRHP DH C G+
Sbjct: 8   RKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGE 52


>pdb|1WFE|A Chain A, Solution Structure Of The 2nd Zf-An1 Domain Of Mouse Riken
           Cdna 2310008m20 Protein
          Length = 86

 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 87  DTAQERRKIFTNK---CSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKCE 135
           +  +ER K   +K   CS K C   EL+ V C  C  NFCL+HRH +DH CE
Sbjct: 12  NVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCE 63


>pdb|1WYS|A Chain A, Solution Structure Of The First Zf-An1 Domain Of Mouse
          Riken Cdna 2310008m20 Protein
          Length = 75

 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 6  LGKHCSIETCKKLDFLPVKCDACLEMFCSDHMSYVGHQCK 45
          +G+HC ++ C++ DFLP  CD C  +FC +H S   H C 
Sbjct: 13 IGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCS 52



 Score = 35.4 bits (80), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 100 CSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKC 134
           C V++C+ ++ +P  C  C+  FCL+HR  + H C
Sbjct: 17  CQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGC 51


>pdb|1WFP|A Chain A, Solution Structure Of The Zf-an1 Domain From Arabiopsis
           Thaliana F5o11.17 Protein
          Length = 74

 Score = 26.6 bits (57), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 117 QCAMNFCLKHRHPNDHKCE 135
           +C   FC  HR+P  H+C+
Sbjct: 43  RCGSTFCGTHRYPESHECQ 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,081,874
Number of Sequences: 62578
Number of extensions: 227380
Number of successful extensions: 443
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 16
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)