RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy822
         (190 letters)



>gnl|CDD|201791 pfam01428, zf-AN1, AN1-like Zinc finger.  Zinc finger at the
           C-terminus of An1, a ubiquitin-like protein in Xenopus
           laevis. The following pattern describes the zinc finger.
           C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can
           be any amino acid, and numbers in brackets indicate the
           number of residues.
          Length = 43

 Score = 46.7 bits (111), Expect = 8e-08
 Identities = 21/37 (56%), Positives = 23/37 (62%)

Query: 100 CSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKCEG 136
           CS K CK K+ +P KC  C   FCLKHR P DH C G
Sbjct: 1   CSFKGCKKKDFLPFKCRFCGGTFCLKHRLPEDHNCPG 37



 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 17/42 (40%), Positives = 19/42 (45%)

Query: 10 CSIETCKKLDFLPVKCDACLEMFCSDHMSYVGHQCKSAARKD 51
          CS + CKK DFLP KC  C   FC  H     H C    +  
Sbjct: 1  CSFKGCKKKDFLPFKCRFCGGTFCLKHRLPEDHNCPGLYKSK 42


>gnl|CDD|197545 smart00154, ZnF_AN1, AN1-like Zinc finger.  Zinc finger at the
           C-terminus of An1, a ubiquitin-like protein in Xenopus
           laevis.
          Length = 39

 Score = 30.4 bits (69), Expect = 0.053
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 110 LIPVKCYQCAMNFCLKHRHPNDHKCEG 136
           L   KC  C   FC +HR P DH C G
Sbjct: 10  LTGFKCRHCGNLFCGEHRLPEDHDCPG 36


>gnl|CDD|226110 COG3582, COG3582, Predicted nucleic acid binding protein containing
           the AN1-type Zn-finger [General function prediction
           only].
          Length = 162

 Score = 30.6 bits (69), Expect = 0.27
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 21  LPVKCDACLEMFCSDHMSYVGHQCK----SAARKDIQVPVCPLCNQPVPT--KRGELPDF 74
           LP + +   ++  +D+   +    K       RK I+ P      + +P        P  
Sbjct: 12  LPSRGNITAKVSSTDNSLTLFSPFKLFIQLCDRKKIKKPDPGQAMKCLPLISSAVSNPSN 71

Query: 75  AVGLHIDNNCDSDTAQERRKIFTNKCSVKNCKGKEL-IPVKCYQCAMNFCLKHRHPNDHK 133
                       +   +  K  T++C+   C GK   +  KC  C   FC +HR P +H 
Sbjct: 72  TDTPKRSTRVPLNGPFDSGKGITDRCATPQCTGKGSTLAGKCNYCTGYFCAEHRLPENHD 131

Query: 134 CEG 136
           C G
Sbjct: 132 CNG 134


>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger.  This domain has SUMO
          (small ubiquitin-like modifier) ligase activity and is
          involved in DNA repair and chromosome organisation.
          Length = 50

 Score = 26.1 bits (58), Expect = 2.3
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 21 LPVKCDACLEMFCSDHMSYVGHQCKSAARKDIQVPVCPLCNQP 63
          +PV+   C  + C D +S++    ++          CP+C++P
Sbjct: 14 IPVRGRFCKHIQCFDLLSFLESNERTPTWN------CPVCDKP 50


>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201).  This is
           a family of coiled-coil proteins from eukaryotes. The
           function is not known.
          Length = 177

 Score = 27.6 bits (62), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 138 KNAARNKALLKMKL-----WHELSNYQCKKHHLRLE 168
           K   RNK L ++KL      H L++ + K H L  E
Sbjct: 57  KIEERNKELKRLKLKYTNTVHILTHLKEKLHMLEEE 92


>gnl|CDD|236006 PRK07377, PRK07377, hypothetical protein; Provisional.
          Length = 184

 Score = 27.3 bits (61), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)

Query: 161 KKHHLRLEIKVFYPTA 176
            K+HLRLE+ V YP  
Sbjct: 104 DKYHLRLEL-VVYPDL 118


>gnl|CDD|219468 pfam07565, Band_3_cyto, Band 3 cytoplasmic domain.  This family
           contains the cytoplasmic domain of the Band 3 anion
           exchange proteins that exchange Cl-/HCO3-. Band 3
           constitutes the most abundant polypeptide in the red
           blood cell membrane, comprising 25% of the total
           membrane protein. The cytoplasmic domain of band 3
           functions primarily as an anchoring site for other
           membrane-associated proteins. Included among the protein
           ligands of cdb3 are ankyrin, protein 4.2, protein 4.1,
           glyceraldehyde-3-phosphate dehydrogenase (GAPDH),
           phosphofructokinase, aldolase, hemoglobin, hemichromes,
           and the protein tyrosine kinase (p72syk).
          Length = 250

 Score = 26.8 bits (60), Expect = 7.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 124 LKHRHPNDHKCEGQKNAARNKA 145
           LKHRH ++ +  G     R+ +
Sbjct: 74  LKHRHQSEKELGGTLPIVRSLS 95


>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
          Length = 452

 Score = 26.9 bits (60), Expect = 8.4
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 138 KNAARNKALLKMKLWHELSNYQCKKHHLRLE 168
           K+ + +   LK  +  +LS ++  KH + + 
Sbjct: 396 KDPSISLEELKTAIKDQLSPFKQPKHWIPVP 426


>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin
           polymerase functions as a GalNAc transferase.
           Chondroitin polymerase is a two domain, bi-functional
           protein. The N-terminal domain functions as a GalNAc
           transferase. The bacterial chondroitin polymerase
           catalyzes elongation of the chondroitin chain by
           alternatively transferring the GlcUA and GalNAc moiety
           from UDP-GlcUA and UDP-GalNAc to the non-reducing ends
           of the chondroitin chain. The enzyme consists of
           N-terminal and C-terminal domains in which the two
           active sites catalyze the addition of GalNAc and GlcUA,
           respectively. Chondroitin chains range from 40 to over
           100 repeating units of the disaccharide. Sulfated
           chondroitins are involved in the regulation of various
           biological functions such as central nervous system
           development, wound repair, infection, growth factor
           signaling, and morphogenesis, in addition to its
           conventional structural roles. In Caenorhabditis
           elegans, chondroitin is an essential factor for the worm
           to undergo cytokinesis and cell division. Chondroitin is
           synthesized as proteoglycans, sulfated and secreted to
           the cell surface or extracellular matrix.
          Length = 182

 Score = 26.4 bits (59), Expect = 8.7
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 108 KELIPVKCYQCAMNFCLKH-RHPNDHKCEG-QKNAARNKALLKMK 150
           KELI  + ++      +KH    ++    G +K   RNKA+   K
Sbjct: 41  KELI--EEFKSQFPIPIKHVWQEDE----GFRKAKIRNKAIAAAK 79


>gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase;
           Validated.
          Length = 374

 Score = 26.8 bits (59), Expect = 8.7
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 12/49 (24%)

Query: 84  CDSDTAQERRKIFTNKCSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDH 132
           CD   ++ R   F N+              K YQ A+ F +KH  P+++
Sbjct: 155 CDGANSKVRSHYFANEIE------------KPYQTALTFNIKHEKPHEN 191


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.138    0.470 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,998,011
Number of extensions: 745349
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 21
Length of query: 190
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 99
Effective length of database: 6,901,388
Effective search space: 683237412
Effective search space used: 683237412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)