RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy822
(190 letters)
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 70.5 bits (172), Expect = 6e-17
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 88 TAQERRKIFTNKCSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKCEGQKNAARN 143
+ RKIFTNKC C+ +E++ + C +C+ NFC+KHRHP DH C G+ + +
Sbjct: 3 SGSSGRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGHPTSS 58
Score = 40.8 bits (95), Expect = 1e-05
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 10 CSIETCKKLDFLPVKCDACLEMFCSDHMSYVGHQCKSAARKDIQVP 55
C C++ + + + C+ C FC H + H C P
Sbjct: 15 CERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGHPTSSGP 60
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 75
Score = 70.4 bits (172), Expect = 7e-17
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 1 MEFPHLGKHCSIETCKKLDFLPVKCDACLEMFCSDHMSYVGHQCKSAARKDIQVPVCPLC 60
M +G+HC ++ C++ DFLP CD C +FC +H S H C +
Sbjct: 8 MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVKERPKTDEHK 67
Query: 61 NQPVPT 66
+ P+
Sbjct: 68 SYSGPS 73
Score = 46.6 bits (110), Expect = 1e-07
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 100 CSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKCEGQKNAARNK 144
C V++C+ ++ +P C C+ FCL+HR + H C
Sbjct: 17 CQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVKERP 61
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.80.1.1
Length = 86
Score = 63.7 bits (154), Expect = 4e-14
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 86 SDTAQERRKIFTNKCSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKCEGQKNAARNKA 145
+ + + CS K C EL+ V C C NFCL+HRH +DH CE + A A
Sbjct: 14 VKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMA 73
Query: 146 LLK 148
+
Sbjct: 74 ATQ 76
Score = 39.8 bits (92), Expect = 4e-05
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 9 HCSIETCKKLDFLPVKCDACLEMFCSDHMSYVGHQCKSAAR 49
CS + C ++ + V C C + FC H H C+
Sbjct: 27 SCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEV 67
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 35.6 bits (82), Expect = 7e-04
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 86 SDTAQERRKIFTNKCSVKNCKGK-ELIPVKCYQCAMNFCLKHRHPNDHKCE 135
+ Q N+C+V C+ + L C +C FC HR+P H C
Sbjct: 4 GSSGQPSPPQRPNRCTV--CRKRVGLTGFMC-RCGTTFCGSHRYPEVHGCT 51
Score = 27.5 bits (61), Expect = 0.72
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 16 KKLDFLPVKCDACLEMFCSDHMSYVGHQC----KSAARKDI 52
K++ C C FC H H C KSA
Sbjct: 23 KRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAGSGPS 62
>1wg2_A Zinc finger (AN1-like) family protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 34.8 bits (80), Expect = 0.001
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 85 DSDTAQERRKIFTNKCSVKNCKGK-ELIPVKCYQCAMNFCLKHRHPNDHKC 134
+ R N+C C K ++ KC +C FC HR+P H+C
Sbjct: 3 SGSSGPSRPVRPNNRCFS--CNKKVGVMGFKC-KCGSTFCGSHRYPEKHEC 50
Score = 27.5 bits (61), Expect = 0.65
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 16 KKLDFLPVKCDACLEMFCSDHMSYVGHQC----KSAARKDI 52
KK+ + KC C FC H H+C K
Sbjct: 23 KKVGVMGFKCK-CGSTFCGSHRYPEKHECSFDFKEVGSGPS 62
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 74
Score = 34.5 bits (79), Expect = 0.002
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 85 DSDTAQERRKIFTNKCSVKNCKGK-ELIPVKCYQCAMNFCLKHRHPNDHKC 134
+ + K +C C K + KC +C FC HR+P H+C
Sbjct: 13 SAAAPLDPPKSTATRCLS--CNKKVGVTGFKC-RCGSTFCGTHRYPESHEC 60
Score = 27.6 bits (61), Expect = 0.75
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 16 KKLDFLPVKCDACLEMFCSDHMSYVGHQC----KSAARKDI 52
KK+ KC C FC H H+C K A
Sbjct: 33 KKVGVTGFKCR-CGSTFCGTHRYPESHECQFDFKGVASGPS 72
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.80.1.1
Length = 85
Score = 34.5 bits (79), Expect = 0.003
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 85 DSDTAQERRKIFTNKCSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKC 134
+ +K C + K +C +C NFC HR+ H C
Sbjct: 13 PVKAPLQTKKKIMKHCFLCGKKTGLATSFEC-RCGNNFCASHRYAEAHGC 61
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Length = 74
Score = 33.0 bits (75), Expect = 0.009
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 85 DSDTAQERRKIFTNKCSVKNCKGK-ELIPVKCYQCAMNFCLKHRHPNDHKC 134
+ A E K N+C + C+ K L C +C FC HR+ + H C
Sbjct: 13 SEEKAPELPKPKKNRCFM--CRKKVGLTGFDC-RCGNLFCGLHRYSDKHNC 60
Score = 26.4 bits (58), Expect = 2.0
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 16 KKLDFLPVKCDACLEMFCSDHMSYVGHQC----KSAAR 49
KK+ C C +FC H H C K+ A
Sbjct: 33 KKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEAS 69
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 67
Score = 30.8 bits (69), Expect = 0.044
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 86 SDTAQERRKIFTNKCSV--KNCKGKELIPVKCYQCAMNFCLKHRHPNDHKC 134
+ ++ +C + + C +C FC+ HR P H C
Sbjct: 4 GSSGSRSKQKSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDC 53
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.65
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 124 LKHRHPNDHKCEGQKNAARNKALLKMKLWHELSNYQCKKHHL--RLEIKVFY 173
L+ D + + R KA ++ W++ + Q +K+ + R+ K FY
Sbjct: 98 LQEL---DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 27.5 bits (61), Expect = 1.0
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 19 DFLPVKCDACLEMFCSDHMSYVGHQ-CKSAARKDIQV-PVCPLCNQPV 64
+ +P +C C + F + ++ H C+S A + + P C +C+QP
Sbjct: 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPT 59
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 27.2 bits (59), Expect = 3.3
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 21 LPVKCDACLEMFCSDHMSYVGHQCKSAARKDIQVPVCPLCNQPVP 65
P K C + C D + ++ Q + + CP+C +
Sbjct: 261 YPSKSINCKHLQCFDALWFLHSQLQIPTWQ------CPVCQIDIA 299
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 3.3
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 22/95 (23%)
Query: 101 SVKNCKGKELIPVK----CYQCAMNFCLKHRHPND--HKCEGQKNAARNKALLKMKLWHE 154
++KNC E + YQ N+ + H ++ + + R LLK K +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYEN 245
Query: 155 ----LSNYQCKKHHLRLEIKVFYPTAVVCPNGTLV 185
L N Q K F + C L+
Sbjct: 246 CLLVLLNVQNAKA-----WNAF---NLSCK--ILL 270
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 3.5
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 13/45 (28%)
Query: 20 FLPVKCDACLEMFCSDHMSYVGHQCKSAAR--------KDIQVPV 56
FLPV F S + KDIQ+PV
Sbjct: 420 FLPVASP-----FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 5.5
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 56 VCPLCNQPVPT-----KRGELPDFAVGLHIDNNCDSDTAQERRKIFTN 98
CP C P G++ GL + + DT E R F+N
Sbjct: 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLSDKL-VDTRSEWRT-FSN 68
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 26.5 bits (57), Expect = 6.0
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 21 LPVKCDACLEMFCSDHMSYVGHQCKSAARKDIQVPVCPLCNQPVP 65
+P + C + C D Y+ K CP+C++
Sbjct: 227 IPCRAVTCTHLQCFDAALYLQMNEKKPTWI------CPVCDKKAA 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.470
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,946,491
Number of extensions: 158370
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 86
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)