RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy822
         (190 letters)



>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 86

 Score = 55.0 bits (132), Expect = 3e-11
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 97  TNKCSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKCEG 136
           +  CS K C   EL+ V C  C  NFCL+HRH +DH CE 
Sbjct: 25  SYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEK 64



 Score = 49.6 bits (118), Expect = 3e-09
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 5  HLGKHCSIETCKKLDFLPVKCDACLEMFCSDHMSYVGHQCKSAA 48
          H    CS + C  ++ + V C  C + FC  H     H C+   
Sbjct: 23 HKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLE 66


>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
           protein At1g12440 {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 74

 Score = 39.9 bits (93), Expect = 9e-06
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 85  DSDTAQERRKIFTNKCSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKC 134
            +    +  K    +C    C  K  +     +C   FC  HR+P  H+C
Sbjct: 13  SAAAPLDPPKSTATRCLS--CNKKVGVTGFKCRCGSTFCGTHRYPESHEC 60



 Score = 28.3 bits (63), Expect = 0.12
 Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 4/42 (9%)

Query: 13 ETCKKLDFLPVKCDACLEMFCSDHMSYVGHQC----KSAARK 50
           +C K   +      C   FC  H     H+C    K  A  
Sbjct: 29 LSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVASG 70


>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 74

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 85  DSDTAQERRKIFTNKCSVKNCKGK-ELIPVKCYQCAMNFCLKHRHPNDHKC 134
             + A E  K   N+C +  C+ K  L    C +C   FC  HR+ + H C
Sbjct: 13  SEEKAPELPKPKKNRCFM--CRKKVGLTGFDC-RCGNLFCGLHRYSDKHNC 60



 Score = 24.5 bits (53), Expect = 2.9
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 5/39 (12%)

Query: 16 KKLDFLPVKCDACLEMFCSDHMSYVGHQC----KSAARK 50
          KK+      C  C  +FC  H     H C    K+ A  
Sbjct: 33 KKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEASG 70


>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 34.8 bits (80), Expect = 8e-04
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 80  IDNNCDSDTAQERRKIFTNKCSVKNCKGKELIPVKCYQCAMNFCLKHRHPNDHKCEGQKN 139
           I +        + +K     C +   K       +C +C  NFC  HR+   H C     
Sbjct: 8   IHHLPPVKAPLQTKKKIMKHCFLCGKKTGLATSFEC-RCGNNFCASHRYAEAHGCNYDYK 66

Query: 140 AARNKALLK 148
           +A  + L +
Sbjct: 67  SAGRRYLEE 75


>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
           protein At2g36320 {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 64

 Score = 34.4 bits (79), Expect = 8e-04
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 86  SDTAQERRKIFTNKCSVKNCKGK-ELIPVKCYQCAMNFCLKHRHPNDHKC 134
             + Q       N+C+V  C+ +  L    C +C   FC  HR+P  H C
Sbjct: 4   GSSGQPSPPQRPNRCTV--CRKRVGLTGFMC-RCGTTFCGSHRYPEVHGC 50



 Score = 25.2 bits (55), Expect = 1.7
 Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 5/39 (12%)

Query: 16 KKLDFLPVKCDACLEMFCSDHMSYVGHQC----KSAARK 50
          K++      C  C   FC  H     H C    KSA   
Sbjct: 23 KRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAGSG 60


>d2o6ka1 a.60.15.1 (A:4-73) Uncharacterized protein MW1311
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 70

 Score = 28.2 bits (63), Expect = 0.16
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 121 NFCLKHRHPNDHKCEGQKNAARNKALLKMKL-WHELSNY 158
            F +  R  +D K    +    + A  K    ++ LS+Y
Sbjct: 5   QFVMTVRGRHDDKGRLAEEIFDDLAFPKHDDDFNILSDY 43


>d2jova1 d.349.1.1 (A:1-77) Hypothetical protein CPE0013
           {Clostridium perfringens [TaxId: 1502]}
          Length = 77

 Score = 23.8 bits (52), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 93  RKIFTNKCSVKNCKGKELIPVK 114
           + IFT+   V+  K   ++PVK
Sbjct: 3   KDIFTSVVRVRGSKKYNVVPVK 24


>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
          horikoshii) [TaxId: 53953]}
          Length = 66

 Score = 23.2 bits (50), Expect = 9.2
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 28 CLEMFCSDHMSYVGHQCKSAARKDIQ 53
           LE +  +         + A RK ++
Sbjct: 31 YLEEYAIEIAKKAVEFARHAGRKTVK 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.470 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 763,864
Number of extensions: 35299
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 39
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)