BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8220
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8MT06|GNL3_DROME Guanine nucleotide-binding protein-like 3 homolog OS=Drosophila
melanogaster GN=ns1 PE=1 SV=2
Length = 581
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 86/146 (58%), Gaps = 17/146 (11%)
Query: 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGK-PSTKIQSGSM 76
R V+E ADV+LEVVDARDP+GTRC E V G PG K+LV+V+NKA P + +
Sbjct: 145 RKVIENADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLNN--- 201
Query: 77 AQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDL------KAINVSSCVGAELLMLLL 130
WI Y ++ + S++ Q + R L KA+ S C+GAELLM +L
Sbjct: 202 ------WIKYFRRSGPVTAFKASTQDQANRLGRRKLREMKTEKAMQGSVCIGAELLMSML 255
Query: 131 GNYTRNKDIKTSITVGVVGECNIAGS 156
GNY RNK IKTSI VGVVG N+ S
Sbjct: 256 GNYCRNKGIKTSIRVGVVGIPNVGKS 281
>sp|Q21086|GNL3_CAEEL Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis
elegans GN=nst-1 PE=3 SV=1
Length = 556
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 82/142 (57%), Gaps = 14/142 (9%)
Query: 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGK-PSTKIQSGSMA 77
R VE ADVI++V+DARDP+G+R K ED V+ GK+LV+++NK P +Q
Sbjct: 142 RKTVEIADVIIQVLDARDPLGSRSKSVEDQVLKG-GKRLVLLLNKIDLVPRENVQK---- 196
Query: 78 QIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAIN---VSSCVGAELLMLLLGNYT 134
W+ Y Q + + S++ QK + +N S CVGA+++M +L NY
Sbjct: 197 -----WLEYLRGQFPTIAFKASTQEQKSNIGRFNSAILNNTETSKCVGADIVMKILANYC 251
Query: 135 RNKDIKTSITVGVVGECNIAGS 156
RNKDIKTSI VGVVG N+ S
Sbjct: 252 RNKDIKTSIRVGVVGFPNVGKS 273
>sp|Q54KS4|GNL3_DICDI Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium
discoideum GN=gnl3 PE=3 SV=1
Length = 615
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 29/153 (18%)
Query: 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVG-TPGKKLVIVINKAGK-PSTKIQSGSM 76
+ V+EA DVIL+V+DARDPMG RC E +++ KK+V+++NK P +
Sbjct: 139 KKVIEAGDVILQVLDARDPMGCRCLEIEKMILERYTNKKIVLILNKIDLVPRENV----- 193
Query: 77 AQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDL-------------KAINVSSCVGA 123
W+ Y +++ Y + F +Q Q +R+L +N + +GA
Sbjct: 194 ----LMWLKY--LRNFYPTLAFKCSTQ---QQKRNLGQQGGIQPELASNDMLNSTESLGA 244
Query: 124 ELLMLLLGNYTRNKDIKTSITVGVVGECNIAGS 156
E L+ LL NY+R+ +IKTS+TVG++G N+ S
Sbjct: 245 EQLLQLLKNYSRSLNIKTSVTVGIIGYPNVGKS 277
>sp|Q9NVN8|GNL3L_HUMAN Guanine nucleotide-binding protein-like 3-like protein OS=Homo
sapiens GN=GNL3L PE=1 SV=1
Length = 582
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 26/151 (17%)
Query: 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTKIQSGSMA 77
R VVE +DVILEV+DARDP+G RC E+ V+ G KKLV+V+NK
Sbjct: 129 RKVVEYSDVILEVLDARDPLGCRCFQMEEAVLRAQGNKKLVLVLNKIDLVPK-------- 180
Query: 78 QIFQTWIPYNSIQSIYSSPRFSSRSQK------------DAQTERDLKAINVSSCVGAEL 125
++ + W+ Y +++ + F + +Q D +E LK+ +C GAE
Sbjct: 181 EVVEKWLDY--LRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKS---KACFGAEN 235
Query: 126 LMLLLGNYTRNKDIKTSITVGVVGECNIAGS 156
LM +LGNY R +++T I VGVVG N+ S
Sbjct: 236 LMRVLGNYCRLGEVRTHIRVGVVGLPNVGKS 266
>sp|Q6PGG6|GNL3L_MOUSE Guanine nucleotide-binding protein-like 3-like protein OS=Mus
musculus GN=Gnl3l PE=1 SV=1
Length = 577
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 31/154 (20%)
Query: 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTKIQSGSMA 77
R VVE +DVILEV+DARDP+G RC E+ V+ G KKLV+V+NK
Sbjct: 122 RKVVEYSDVILEVLDARDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVP--------K 173
Query: 78 QIFQTWIPY--NSIQSIYSSPRFSSRSQK-------------DAQTERDLKAINVSSCVG 122
+I + W+ Y N + ++ F + +Q D +E LK+ +C G
Sbjct: 174 EIVEKWLEYLLNELPTVA----FKASTQHHQVKNLTRCKVPVDQASESLLKS---RACFG 226
Query: 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGS 156
AE LM +LGNY R +++ I VGVVG N+ S
Sbjct: 227 AENLMRVLGNYCRLGEVRGHIRVGVVGLPNVGKS 260
>sp|Q3T0J9|GNL3L_BOVIN Guanine nucleotide-binding protein-like 3-like protein OS=Bos
taurus GN=GNL3L PE=2 SV=1
Length = 575
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 27/160 (16%)
Query: 10 RGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPS 68
R +E + VVE +DVILEV+D+RDP+G RC E+ V+ G KKLV+V+NK
Sbjct: 114 RKAYYKEFHK-VVEYSDVILEVLDSRDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVP 172
Query: 69 TKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQK------------DAQTERDLKAIN 116
++ + W+ Y +++ + F + +Q D +E LK+
Sbjct: 173 K--------EVVEKWLEY--LRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKS-- 220
Query: 117 VSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGS 156
+C GAE LM +LGNY R +++T I VGVVG N+ S
Sbjct: 221 -KACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKS 259
>sp|Q9BVP2|GNL3_HUMAN Guanine nucleotide-binding protein-like 3 OS=Homo sapiens GN=GNL3
PE=1 SV=2
Length = 549
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 19/154 (12%)
Query: 10 RGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGK-PS 68
+ + QE+++ V+EA+DV+LEV+DARDP+G RC E+ +V + KKLV+++NK+ P
Sbjct: 127 KKLYCQELKK-VIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKSDLVPK 185
Query: 69 TKIQSGSMAQIFQTWIPY------NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVG 122
++S W+ Y + + P+ + K + +++ C G
Sbjct: 186 ENLES---------WLNYLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFG 236
Query: 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGS 156
E L LLG + +I VGV+G N+ S
Sbjct: 237 KEGLWKLLGGFQET--CSKAIRVGVIGFPNVGKS 268
>sp|Q6DRP2|GNL3_DANRE Guanine nucleotide-binding protein-like 3 OS=Danio rerio GN=gnl3
PE=2 SV=1
Length = 561
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 20/152 (13%)
Query: 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGK-PSTKIQ 72
QE+ + V+EA+DVI+EV+DARDP+G RC E++V+ G KKL+ ++NK P ++
Sbjct: 134 QELNK-VIEASDVIVEVLDARDPLGCRCPQLEEMVLKHEGKKKLLFILNKIDLVPKDNLE 192
Query: 73 SGSMAQIFQTWIPYNSIQS----IYSSPRFSSRSQKDAQTERDLKAI----NVSSCVGAE 124
W+ + + SS + R+ + + +R A+ +SC G +
Sbjct: 193 K---------WLHFLEAECPTFLFKSSMQLKDRTVQQKRQQRGTNAVLDHSRAASCFGKD 243
Query: 125 LLMLLLGNYTRNKDIKTSITVGVVGECNIAGS 156
L+ L + K+ +T + VGVVG N+ S
Sbjct: 244 FLLQTLNDLANKKEGETMLKVGVVGFPNVGKS 275
>sp|P40010|NUG1_YEAST Nuclear GTP-binding protein NUG1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NUG1 PE=1 SV=1
Length = 520
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 21/154 (13%)
Query: 7 MEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAG- 65
+E +I +SV++A+DVIL V+DARDP TR + E+ V+ + GK+L++++NK
Sbjct: 158 LEKSRKAYDKIFKSVIDASDVILYVLDARDPESTRSRKVEEAVLQSQGKRLILILNKVDL 217
Query: 66 -KPSTKIQSGSMAQIFQTWIPYNSIQSIYSS-P-RFSSRSQKDAQTERDLKAINVSSCVG 122
P + + W+ Y ++S + + P R SS + R L S
Sbjct: 218 IPP----------HVLEQWLNY--LKSSFPTIPLRASSGAVNGTSFNRKL-----SQTTT 260
Query: 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGS 156
A L+ L Y+ N ++K SI VGV+G N+ S
Sbjct: 261 ASALLESLKTYSNNSNLKRSIVVGVIGYPNVGKS 294
>sp|O74791|GRN1_SCHPO GTPase grn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=grn1 PE=1 SV=1
Length = 470
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 18/157 (11%)
Query: 3 SVKPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG--KKLVIV 60
SVK R +E ++ VVEA+DVIL V+DARDP GTR K E V+ + K+L+ V
Sbjct: 142 SVKADTSRKAYDKEFKK-VVEASDVILYVLDARDPEGTRSKDVERQVLASSAEEKRLIFV 200
Query: 61 INKAGK-PSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSS 119
INK PS ++ W+ Y +++ + P RS + +LK + S+
Sbjct: 201 INKIDLVPS---------EVLNKWVTY--LRNFF--PTIPMRSASGSGNS-NLKHQSASA 246
Query: 120 CVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGS 156
L+ L +Y+ K +K+S+TVGV+G N+ S
Sbjct: 247 SSTISNLLKSLKSYSAKKKLKSSLTVGVIGYPNVGKS 283
>sp|Q6P4W5|GNL3_XENTR Guanine nucleotide-binding protein-like 3 OS=Xenopus tropicalis
GN=gnl3 PE=2 SV=2
Length = 548
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIF 80
V+E +DV+LEV+DARDP+G+RC AE+ V+ +P K+L++++NKA + + Q+
Sbjct: 131 VLEQSDVVLEVLDARDPLGSRCAQAEEAVLKSPNKRLLLLLNKADLVPRDVLEKWL-QVL 189
Query: 81 QTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIK 140
+P + + +P S + DL N C G ++L+ +L + ++
Sbjct: 190 TAELPTVPFRCLPQAPSKSPGKKHKVPNTADLCTEN--RCPGGQVLLRILHSLCPSQS-- 245
Query: 141 TSITVGVVGECNIAGS 156
+I VGV+G N+ S
Sbjct: 246 DAIKVGVIGFANVGKS 261
>sp|Q8CI11|GNL3_MOUSE Guanine nucleotide-binding protein-like 3 OS=Mus musculus GN=Gnl3
PE=1 SV=2
Length = 538
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 22/154 (14%)
Query: 10 RGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGK-PS 68
+ + QE+++ V+EA+D++LEV+DARDP+G RC E+ V+ + KKL++V+NK+ P
Sbjct: 125 KKLHCQELKK-VIEASDIVLEVLDARDPLGCRCPQIEEAVIQSGSKKLILVLNKSDLVPK 183
Query: 69 TKIQSGSMAQIFQTWIPYNSIQ----SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAE 124
+++ W+ Y + + +S +R ++ + C G E
Sbjct: 184 ENLEN---------WLNYLNKELPTVVFKASTNLKNRKTF-KIKKKKVVPFQSKICCGKE 233
Query: 125 LLMLLLGNYTRN--KDIKTSITVGVVGECNIAGS 156
L LLG++ ++ KDI+ VGV+G N+ S
Sbjct: 234 ALWKLLGDFQQSCGKDIQ----VGVIGFPNVGKS 263
>sp|Q811S9|GNL3_RAT Guanine nucleotide-binding protein-like 3 OS=Rattus norvegicus
GN=Gnl3 PE=1 SV=1
Length = 538
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 10 RGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKA 64
+ + QE+++ V+EA+D++LEV+DARDP+G RC E+ V+ + KKLV+V+NK+
Sbjct: 125 KKLHCQELKK-VIEASDIVLEVLDARDPLGCRCPQVEEAVIQSGCKKLVLVLNKS 178
>sp|Q7ZX41|GNL3_XENLA Guanine nucleotide-binding protein-like 3 OS=Xenopus laevis GN=gnl3
PE=2 SV=1
Length = 542
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGK-PSTKIQSGSMAQI 79
V+E +DVI+EV+DARDP+G+RC AE++V+ +P K+L++++NK+ P ++ Q+
Sbjct: 130 VLEQSDVIVEVLDARDPLGSRCSQAEEVVLKSPNKRLLLLLNKSDLVPREMVE--KWLQV 187
Query: 80 FQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKA--INVSSCVGAELLMLLLGNYTRNK 137
+P + + + +S+K + + + A + C G ++L+ +L + +
Sbjct: 188 LSAELPTVPFRCVA---QIQDKSEKKKKKKVPVSADLVTDPKCPGGQVLLKILHSLCPSH 244
Query: 138 DIKTSITVGVVGECNIAGS 156
+ +I VGV+G N+ S
Sbjct: 245 N--EAIKVGVIGFANVGKS 261
>sp|P53742|NOG2_YEAST Nucleolar GTP-binding protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOG2 PE=1 SV=1
Length = 486
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 30/139 (21%)
Query: 21 VVEAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQI 79
V++++DV++ V+DARDP+GTRCK V E + TP K L+ V+NK +
Sbjct: 218 VIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYVLNK-------------CDL 264
Query: 80 FQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVS--SCVGAELLMLLLGNYTRNK 137
TW+ ++ + ER A + S + G L+ LL +++
Sbjct: 265 VPTWVAAAWVKHL--------------SKERPTLAFHASITNSFGKGSLIQLLRQFSQLH 310
Query: 138 DIKTSITVGVVGECNIAGS 156
+ I+VG +G N S
Sbjct: 311 TDRKQISVGFIGYPNTGKS 329
>sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=NOG2 PE=3 SV=1
Length = 494
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 28/138 (20%)
Query: 21 VVEAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQI 79
V++++DV++ V+DARDP+GTRCK V E + TP K L+ V+NK +
Sbjct: 218 VIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYVLNK-------------CDL 264
Query: 80 FQTWIPYNSIQSIYSS-PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD 138
TW+ ++ + P + + ++++ G L+ LL +++
Sbjct: 265 VPTWVAAAWVKHLSKDRPTLAFHA-------------SITNSFGKGSLIQLLRQFSQLHT 311
Query: 139 IKTSITVGVVGECNIAGS 156
+ I+VG +G N S
Sbjct: 312 DRKQISVGFIGYPNTGKS 329
>sp|Q7SHR8|NOG2_NEUCR Nucleolar GTP-binding protein 2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nog-2 PE=3 SV=1
Length = 619
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAED-LVVGTPGKKLVIVINK 63
V++++DVIL V+DARDP+GTRC+ E L P K L+ V+NK
Sbjct: 228 VIDSSDVILHVIDARDPLGTRCRHVEKYLATEAPHKHLIFVLNK 271
>sp|Q6TGJ8|NOG2_CRYGA Nucleolar GTP-binding protein 2 OS=Cryptococcus gattii GN=NOG2 PE=3
SV=1
Length = 731
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 22/141 (15%)
Query: 21 VVEAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQI 79
V++++DV++ V+DARDP+GTRCK V E L K LV V+NK T + SG A
Sbjct: 229 VLDSSDVVIHVLDARDPLGTRCKPVVEYLRKEKAHKHLVYVLNKVDLVPTWVTSGPYAYA 288
Query: 80 FQT----WIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135
+ W+ + S+ S+P + + ++++ G L+ LL ++
Sbjct: 289 YANGPARWVKHLSL----SAPTIAFHA-------------SINNSFGKGSLIQLLRQFSV 331
Query: 136 NKDIKTSITVGVVGECNIAGS 156
K I+VG +G N S
Sbjct: 332 LHSDKKQISVGFIGYPNTGKS 352
>sp|Q6CSP9|NOG2_KLULA Nucleolar GTP-binding protein 2 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NOG2 PE=3 SV=1
Length = 513
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVG-TPGKKLVIVINK 63
V++++DV++ V+DARDP+GTRCK D + TP K L+ V+NK
Sbjct: 217 VIDSSDVVIHVLDARDPLGTRCKSVTDYMTNETPHKHLIYVLNK 260
>sp|Q75DA4|NOG2_ASHGO Nucleolar GTP-binding protein 2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NOG2
PE=3 SV=1
Length = 502
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVG-TPGKKLVIVINK 63
V++++DV++ V+DARDP+GTRCK E+ + TP K L+ V+NK
Sbjct: 217 VIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYVLNK 260
>sp|Q9C3Z4|NOG2_PNECA Nucleolar GTP-binding protein 2 OS=Pneumocystis carinii GN=NOG2
PE=2 SV=1
Length = 483
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 32/139 (23%)
Query: 22 VEAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIF 80
++++DVI++++DAR+P+GTRCK V E L P K +++++NK +
Sbjct: 196 IDSSDVIIQLLDARNPLGTRCKHVEEYLKKEKPHKHMILLLNK-------------CDLI 242
Query: 81 QTWIPYNSIQSI---YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137
TW I+ + Y + F + ++++ G L+ LL +++
Sbjct: 243 PTWCTREWIKQLSKEYPTLAFHA---------------SINNPFGKGSLIQLLRQFSKLH 287
Query: 138 DIKTSITVGVVGECNIAGS 156
+ I+VG +G N S
Sbjct: 288 SNRRQISVGFIGYPNTGKS 306
>sp|Q6C036|NOG2_YARLI Nucleolar GTP-binding protein 2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=NOG2 PE=3 SV=1
Length = 509
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVG-TPGKKLVIVINKAGKPSTKIQSGSMAQI 79
V++++DV++ V+DARDP+GTRC E + P K L+ V+NK T + + + +
Sbjct: 210 VIDSSDVVIHVLDARDPLGTRCTSVEQYIKKEAPHKHLIFVLNKCDLVPTWVAAAWVKHL 269
Query: 80 FQTW 83
Q +
Sbjct: 270 SQDY 273
>sp|J9VQ03|NOG2_CRYNH Nucleolar GTP-binding protein 2 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=NOG2 PE=3 SV=2
Length = 720
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 26/137 (18%)
Query: 21 VVEAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQI 79
V++++DV++ V+DARDP+GTRCK V E L K LV V+NK T + +
Sbjct: 231 VLDSSDVVIHVLDARDPLGTRCKPVVEYLRKEKAHKHLVYVLNKVDLVPTWVTA------ 284
Query: 80 FQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDI 139
W+ + S+ S+P + + ++++ G L+ LL ++
Sbjct: 285 --RWVKHLSL----SAPTIAFHA-------------SINNSFGKGSLIQLLRQFSVLHSD 325
Query: 140 KTSITVGVVGECNIAGS 156
K I+VG +G N S
Sbjct: 326 KKQISVGFIGYPNTGKS 342
>sp|P0CS94|NOG2_CRYNV Nucleolar GTP-binding protein 2 OS=Cryptococcus neoformans var.
grubii GN=NOG2 PE=3 SV=1
Length = 693
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 26/137 (18%)
Query: 21 VVEAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQI 79
V++++DV++ V+DARDP+GTRCK V E L K LV V+NK T + +
Sbjct: 204 VLDSSDVVIHVLDARDPLGTRCKPVVEYLRKEKAHKHLVYVLNKVDLVPTWVTA------ 257
Query: 80 FQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDI 139
W+ + S+ S+P + + ++++ G L+ LL ++
Sbjct: 258 --RWVKHLSL----SAPTIAFHA-------------SINNSFGKGSLIQLLRQFSVLHSD 298
Query: 140 KTSITVGVVGECNIAGS 156
K I+VG +G N S
Sbjct: 299 KKQISVGFIGYPNTGKS 315
>sp|Q13823|NOG2_HUMAN Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1
Length = 731
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAED-LVVGTPGKKLVIVINK 63
V++++DV+++V+DARDPMGTR E L P K L+ V+NK
Sbjct: 213 VIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNK 256
>sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=2
Length = 728
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAED-LVVGTPGKKLVIVINK 63
V++++DV+++V+DARDPMGTR E L P K L+ V+NK
Sbjct: 213 VIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFVLNK 256
>sp|O14236|NOG2_SCHPO Nucleolar GTP-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nog2 PE=1 SV=1
Length = 537
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVG-TPGKKLVIVINK 63
V++++DV+++V+DARDP+GTRC E + K +++V+NK
Sbjct: 213 VIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILVLNK 256
>sp|Q8SUT1|GNL3L_ENCCU Guanine nucleotide-binding protein-like 3-like protein
OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU08_0330
PE=1 SV=1
Length = 387
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVIN 62
+V +DV++EV+DARDP +R AE +V GKKL++V+N
Sbjct: 167 LVSKSDVVIEVIDARDPDSSRNSEAEK-IVSEHGKKLIMVLN 207
>sp|Q5ZJD3|LSG1_CHICK Large subunit GTPase 1 homolog OS=Gallus gallus GN=LSG1 PE=2 SV=1
Length = 653
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVG-TPGKKLVIVINKAGKPSTKIQSGSMAQI 79
V+E +D+++++VDAR+P+ RC+ E V + K+ +I+INKA S + Q + AQ
Sbjct: 161 VIERSDIVVQIVDARNPLLFRCQDLESYVKEVSNDKENMILINKADLLSEE-QRAAWAQF 219
Query: 80 FQ 81
F+
Sbjct: 220 FE 221
>sp|Q10190|LSG1_SCHPO Large subunit GTPase 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=lsg1 PE=3 SV=1
Length = 616
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 34/177 (19%)
Query: 8 EMRGVVVQEIERS---------VVEAADVILEVVDARDPMGTRCKVAEDLV--VGTPGKK 56
++ G +V ER+ V+E +DV++++VDAR+P+ R E V VG P KK
Sbjct: 145 DVEGFIVTPFERNLEIWRQLWRVIERSDVVVQIVDARNPLFFRSAHLEQYVKEVG-PSKK 203
Query: 57 LVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQ---KDAQTERDLK 113
+++NKA + + + ++ N+I ++ S R ++ + +D +T
Sbjct: 204 NFLLVNKA-----DMLTEEQRNYWSSYFNENNIPFLFFSARMAAEANERGEDLETYESTS 258
Query: 114 AINVSSCVGAE----------LLMLLLGNYTRNK----DIKTSITVGVVGECNIAGS 156
+ + + A+ L +L G + + D KT +T G+VG N+ S
Sbjct: 259 SNEIPESLQADENDVHSSRIATLKVLEGIFEKFASTLPDGKTKMTFGLVGYPNVGKS 315
>sp|Q65JP4|RBGA_BACLD Ribosome biogenesis GTPase A OS=Bacillus licheniformis (strain
DSM 13 / ATCC 14580) GN=rbgA PE=3 SV=1
Length = 283
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 26 DVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85
D++ E+VDAR PM +R + ED++ P ++++NKA K + + + IP
Sbjct: 25 DIVYELVDARIPMSSRNPMIEDILKNKPR---IMLLNKADKADSSVTKAWKQHFEKDGIP 81
Query: 86 YNSIQSI 92
+I S+
Sbjct: 82 TLAINSV 88
>sp|D5DJL5|RBGA_BACMD Ribosome biogenesis GTPase A OS=Bacillus megaterium (strain DSM
319) GN=rbgA PE=3 SV=1
Length = 288
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 24/133 (18%)
Query: 26 DVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85
D++ E+VDAR P +R + ++++V P ++++NK K ++ Q W+
Sbjct: 25 DIVYELVDARIPQSSRNPMIDEIIVNKP---RIVLLNKVDKADPRVT--------QQWLD 73
Query: 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKT--SI 143
Y Q IY+ DAQ + +K I SS ELL + R K +K +I
Sbjct: 74 YYKEQGIYA-------LAIDAQAGKGMKQIVSSS---KELLQEKF-DRMRAKGVKKPRAI 122
Query: 144 TVGVVGECNIAGS 156
+VG N+ S
Sbjct: 123 RAMIVGIPNVGKS 135
>sp|Q2YDM7|LSG1_BOVIN Large subunit GTPase 1 homolog OS=Bos taurus GN=LSG1 PE=2 SV=1
Length = 652
Score = 36.6 bits (83), Expect = 0.073, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQI 79
V+E +D+++++VDAR+P+ RC+ E V K+ VI+INKA + + Q + A+
Sbjct: 170 VIERSDIVVQIVDARNPLLFRCEDLECYVKTIDDNKENVILINKADLLTAE-QRSAWAEF 228
Query: 80 FQ 81
F+
Sbjct: 229 FK 230
>sp|Q5BJT6|LSG1_RAT Large subunit GTPase 1 homolog OS=Rattus norvegicus GN=Lsg1 PE=2
SV=1
Length = 655
Score = 36.2 bits (82), Expect = 0.085, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKA 64
V+E +D+++++VDAR+P+ RC+ E V K+ VI+INKA
Sbjct: 170 VIERSDIVVQIVDARNPLLFRCEDLECYVKEIDAAKENVILINKA 214
>sp|Q3UM18|LSG1_MOUSE Large subunit GTPase 1 homolog OS=Mus musculus GN=Lsg1 PE=2 SV=2
Length = 644
Score = 36.2 bits (82), Expect = 0.085, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKA 64
V+E +D+++++VDAR+P+ RC+ E V K+ VI+INKA
Sbjct: 170 VIERSDIVVQIVDARNPLLFRCEDLECYVKEIDAAKENVILINKA 214
>sp|Q4R8L2|LSG1_MACFA Large subunit GTPase 1 homolog OS=Macaca fascicularis GN=LSG1 PE=2
SV=1
Length = 653
Score = 36.2 bits (82), Expect = 0.085, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKA 64
V+E +D+++++VDAR+P+ RC+ E V K+ VI+INKA
Sbjct: 170 VIERSDIVVQIVDARNPLLFRCEDLECYVKEIDASKENVILINKA 214
>sp|Q9H089|LSG1_HUMAN Large subunit GTPase 1 homolog OS=Homo sapiens GN=LSG1 PE=1 SV=2
Length = 658
Score = 36.2 bits (82), Expect = 0.097, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKA 64
V+E +D+++++VDAR+P+ RC+ E V K+ VI+INKA
Sbjct: 170 VIERSDIVVQIVDARNPLLFRCEDLECYVKEMDANKENVILINKA 214
>sp|E0TTS5|RBGA_BACPZ Ribosome biogenesis GTPase A OS=Bacillus subtilis subsp.
spizizenii (strain ATCC 23059 / NRRL B-14472 / W23)
GN=rbgA PE=3 SV=1
Length = 282
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 26 DVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85
D++ E+VDAR PM +R + ED++ P ++++NKA K A + Q W
Sbjct: 25 DIVYELVDARIPMSSRNPMIEDILKNKPR---IMLLNKADKAD--------AAVTQQWKE 73
Query: 86 YNSIQSIYS 94
+ Q I S
Sbjct: 74 HFENQGIRS 82
>sp|O31743|RBGA_BACSU Ribosome biogenesis GTPase A OS=Bacillus subtilis (strain 168)
GN=rbgA PE=1 SV=1
Length = 282
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 26 DVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85
D++ E+VDAR PM +R + ED++ P ++++NKA K A + Q W
Sbjct: 25 DIVYELVDARIPMSSRNPMIEDILKNKP---RIMLLNKADKAD--------AAVTQQWKE 73
Query: 86 YNSIQSIYS 94
+ Q I S
Sbjct: 74 HFENQGIRS 82
>sp|Q58859|Y1464_METJA Uncharacterized GTP-binding protein MJ1464 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1464 PE=3 SV=1
Length = 373
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 4 VKPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINK 63
V+ M + V V++I +++ DVIL V+DARDP TR + E + GKKL+ V+NK
Sbjct: 3 VRVMRYKKVPVKKIVNKIIDECDVILLVLDARDPEMTRNRELE-KKIKAKGKKLIYVLNK 61
Query: 64 A 64
A
Sbjct: 62 A 62
>sp|Q6NY89|LSG1_DANRE Large subunit GTPase 1 homolog OS=Danio rerio GN=lsg1 PE=2 SV=1
Length = 640
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIF 80
V+E +DV++++VDAR+P+ RC E V K+ +++ T+ Q + A+ F
Sbjct: 171 VIERSDVVVQIVDARNPLLFRCPDLEKYVKEVSVHKVNMLLLNKADLLTREQRRAWARYF 230
Query: 81 Q 81
Q
Sbjct: 231 Q 231
>sp|Q9V979|CP6U1_DROME Probable cytochrome P450 6u1 OS=Drosophila melanogaster GN=Cyp6u1
PE=2 SV=3
Length = 488
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 77 AQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136
A+ + + P N + + + SSR Q+D E+ L+ IN+S VGA N
Sbjct: 134 AKSAEVFTPANMQKLLVRLSQISSRIQRDL-GEKSLQTINISELVGA-----------YN 181
Query: 137 KDIKTSITVGVVGECNI 153
D+ S+ G+VG+ N+
Sbjct: 182 TDVMASMAFGLVGQDNV 198
>sp|Q0AE46|DER_NITEC GTPase Der OS=Nitrosomonas eutropha (strain C91) GN=der PE=3 SV=1
Length = 468
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKA-GKPST 69
V+ ADV+L +VD R + ++ K+ D + T G+K+++V+NKA G P +
Sbjct: 80 VDEADVVLFIVDGRQGLASQDKIIADQLRKT-GRKIILVVNKAEGMPYS 127
>sp|A8FD69|RBGA_BACP2 Ribosome biogenesis GTPase A OS=Bacillus pumilus (strain
SAFR-032) GN=rbgA PE=3 SV=1
Length = 282
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 26 DVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85
D++ E+ DAR PM +R + E+++ P ++++NKA K ++ A Q +
Sbjct: 25 DIVFELTDARIPMSSRNPMIEEILQNKPK---IMLLNKADKADPRVTKEWQAHFEQQGVR 81
Query: 86 YNSIQSI 92
+I S+
Sbjct: 82 SLAINSV 88
>sp|B7GGD6|RBGA_ANOFW Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus
(strain DSM 21510 / WK1) GN=rbgA PE=3 SV=1
Length = 284
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 26 DVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85
D++ E+VDAR PM +R + +++V P +I++NKA + + W+
Sbjct: 28 DIVFELVDARIPMSSRNPLIDEIVANKPR---IILLNKADMADPDVT--------KQWVD 76
Query: 86 YNSIQSI 92
+ + Q I
Sbjct: 77 FFAAQQI 83
>sp|P53145|LSG1_YEAST Large subunit GTPase 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSG1 PE=1 SV=1
Length = 640
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 4 VKPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINK 63
+ P E V +++ R VVE +D+++++VDAR+P+ R E V + +K +++
Sbjct: 178 LTPFERNIEVWKQLWR-VVERSDLVVQIVDARNPLLFRSVDLERYVKESDDRKANLLLVN 236
Query: 64 AGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLK 113
TK Q + A+ F I N + YS+ R + +K + D +
Sbjct: 237 KADLLTKKQRIAWAKYF---ISKNISFTFYSALRANQLLEKQKEMGEDYR 283
>sp|Q9W590|LSG1_DROME Large subunit GTPase 1 homolog OS=Drosophila melanogaster GN=ns3
PE=1 SV=1
Length = 606
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKA 64
VVE +DV++++VDAR+P+ R E V P K +I++NK+
Sbjct: 171 VVERSDVVVQIVDARNPLLFRSADLERYVKEVEPSKMNMILVNKS 215
>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2
Length = 1640
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 17 IERSVVEAADVILEVVDARDPMG-TRCKVAEDLVVGTPGKKLVIVINKAGKP-------- 67
I V E A V ++D DPM R ++ + + P K++ + KAGK
Sbjct: 40 IREKVGEQAQVT--IIDMSDPMAPIRRPISAESAIMNPASKVIAL--KAGKTLQIFNIEM 95
Query: 68 STKIQSGSMAQ--IFQTWIPYNSIQSIYSSPRFSSRSQKDAQ 107
+K+++ +MA+ IF W+ N++ + + + + D+Q
Sbjct: 96 KSKMKAHTMAEEVIFWKWVSVNTVALVTETAVYHWSMEGDSQ 137
>sp|A5CY46|MNME_PELTS tRNA modification GTPase MnmE OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=mnmE PE=3 SV=1
Length = 459
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVV--GTPGKKLVIVINKAGKPSTKIQSGSM 76
R VE AD++L V+DA R ED + GKK++ ++NKA KI S
Sbjct: 294 REAVEQADLVLLVLDA-----ARGLTEEDYAIIEKVGGKKVIFIVNKADVREKKISSEGA 348
Query: 77 AQI 79
A+I
Sbjct: 349 ARI 351
>sp|B1YR40|DER_BURA4 GTPase Der OS=Burkholderia ambifaria (strain MC40-6) GN=der PE=3
SV=1
Length = 445
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 4 VKPMEMRGVVVQEIE--RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVI 61
+P+ G++ Q R VE ADV++ +VD R+ + + K D + T G+ + +V+
Sbjct: 60 FEPVAKDGILHQMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKT-GRPIFLVV 118
Query: 62 NKA 64
NKA
Sbjct: 119 NKA 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,811,491
Number of Sequences: 539616
Number of extensions: 1832134
Number of successful extensions: 5549
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 5472
Number of HSP's gapped (non-prelim): 124
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)