Query psy8220
Match_columns 161
No_of_seqs 225 out of 1736
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:44:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2484|consensus 100.0 5.2E-28 1.1E-32 193.6 10.4 137 10-160 133-270 (435)
2 cd01858 NGP_1 NGP-1. Autoanti 99.9 5.7E-26 1.2E-30 164.6 10.9 117 19-160 3-120 (157)
3 TIGR03596 GTPase_YlqF ribosome 99.9 1.8E-25 3.9E-30 175.8 11.3 124 6-160 5-136 (276)
4 KOG2423|consensus 99.9 2.6E-25 5.6E-30 178.2 10.9 123 12-160 202-325 (572)
5 PRK09563 rbgA GTPase YlqF; Rev 99.9 7.1E-25 1.5E-29 173.3 10.6 124 6-160 8-139 (287)
6 cd04178 Nucleostemin_like Nucl 99.9 6.9E-24 1.5E-28 156.2 11.1 124 26-160 1-135 (172)
7 COG1161 Predicted GTPases [Gen 99.9 4.2E-24 9.1E-29 171.2 10.7 126 5-160 17-150 (322)
8 KOG1424|consensus 99.9 6.3E-24 1.4E-28 174.6 9.6 90 3-102 154-244 (562)
9 cd01856 YlqF YlqF. Proteins o 99.9 3.6E-23 7.8E-28 152.0 11.6 124 6-160 3-133 (171)
10 COG1160 Predicted GTPases [Gen 99.9 3.1E-23 6.6E-28 169.3 12.3 122 10-160 69-196 (444)
11 cd01859 MJ1464 MJ1464. This f 99.9 1.7E-22 3.7E-27 146.0 11.6 118 14-160 2-119 (156)
12 cd01849 YlqF_related_GTPase Yl 99.9 8.8E-22 1.9E-26 142.4 10.5 109 26-160 1-118 (155)
13 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 1.5E-21 3.3E-26 139.1 9.5 99 14-160 2-101 (141)
14 cd01855 YqeH YqeH. YqeH is an 99.8 1.5E-20 3.3E-25 140.0 8.9 117 15-160 25-145 (190)
15 PRK13796 GTPase YqeH; Provisio 99.8 3.9E-19 8.4E-24 144.8 11.8 124 6-160 51-178 (365)
16 KOG2485|consensus 99.8 1.8E-19 3.9E-24 141.0 7.9 127 6-160 30-161 (335)
17 TIGR03597 GTPase_YqeH ribosome 99.8 8.1E-19 1.8E-23 142.7 11.5 126 5-160 44-172 (360)
18 PRK03003 GTP-binding protein D 99.8 4.3E-18 9.3E-23 142.9 11.3 119 13-160 106-229 (472)
19 TIGR03594 GTPase_EngA ribosome 99.8 7.9E-18 1.7E-22 139.4 11.4 117 14-160 68-190 (429)
20 PRK12289 GTPase RsgA; Reviewed 99.7 7.9E-18 1.7E-22 136.3 8.9 105 19-160 84-190 (352)
21 PRK09518 bifunctional cytidyla 99.7 2.1E-17 4.5E-22 144.7 11.6 118 14-160 344-468 (712)
22 PRK00093 GTP-binding protein D 99.7 3.9E-17 8.4E-22 135.6 12.1 118 13-160 69-191 (435)
23 TIGR00157 ribosome small subun 99.7 2.2E-16 4.8E-21 122.3 8.9 110 14-160 26-138 (245)
24 PRK00098 GTPase RsgA; Reviewed 99.7 3.7E-16 8E-21 124.2 8.2 103 21-160 77-182 (298)
25 COG1159 Era GTPase [General fu 99.6 3.7E-15 8E-20 116.5 11.5 108 4-136 65-173 (298)
26 cd01854 YjeQ_engC YjeQ/EngC. 99.6 7.7E-16 1.7E-20 121.8 7.6 102 21-160 75-179 (287)
27 PRK12288 GTPase RsgA; Reviewed 99.6 1.1E-14 2.5E-19 117.8 8.9 104 22-160 118-223 (347)
28 PRK01889 GTPase RsgA; Reviewed 99.5 1.2E-13 2.6E-18 112.4 9.2 101 22-160 110-213 (356)
29 COG1160 Predicted GTPases [Gen 99.4 2.9E-12 6.3E-17 105.3 11.3 115 19-136 255-372 (444)
30 PF00009 GTP_EFTU: Elongation 99.4 2.4E-12 5.1E-17 95.6 9.3 105 5-135 77-187 (188)
31 TIGR00436 era GTP-binding prot 99.4 5.5E-12 1.2E-16 98.9 11.6 102 8-136 63-165 (270)
32 PRK00089 era GTPase Era; Revie 99.3 8.3E-11 1.8E-15 93.0 11.4 104 7-135 67-171 (292)
33 PRK15494 era GTPase Era; Provi 99.2 1.2E-10 2.6E-15 94.2 11.7 105 6-136 113-217 (339)
34 cd01894 EngA1 EngA1 subfamily. 99.2 7.3E-10 1.6E-14 78.6 11.7 91 14-133 66-156 (157)
35 COG0486 ThdF Predicted GTPase 99.2 1.7E-10 3.6E-15 95.2 9.1 92 14-137 287-378 (454)
36 COG2262 HflX GTPases [General 99.1 2.4E-10 5.1E-15 93.0 9.0 99 6-136 255-357 (411)
37 cd04165 GTPBP1_like GTPBP1-lik 99.1 6.3E-10 1.4E-14 85.2 10.2 103 6-133 92-221 (224)
38 PRK09866 hypothetical protein; 99.1 8E-10 1.7E-14 94.9 11.2 94 19-133 253-351 (741)
39 COG1162 Predicted GTPases [Gen 99.1 5.6E-10 1.2E-14 88.1 9.3 105 19-160 74-182 (301)
40 cd01888 eIF2_gamma eIF2-gamma 99.1 1.4E-09 2.9E-14 81.9 11.1 102 13-136 96-200 (203)
41 cd01889 SelB_euk SelB subfamil 99.1 1.8E-09 3.8E-14 80.3 11.0 101 12-135 80-186 (192)
42 PRK15467 ethanolamine utilizat 99.1 2E-09 4.2E-14 78.0 10.8 96 12-136 53-148 (158)
43 TIGR03594 GTPase_EngA ribosome 99.1 6.5E-10 1.4E-14 92.2 9.3 112 19-134 249-363 (429)
44 cd04163 Era Era subfamily. Er 99.1 2.4E-09 5.1E-14 76.1 11.1 98 11-133 69-167 (168)
45 cd01884 EF_Tu EF-Tu subfamily. 99.1 1.7E-09 3.7E-14 81.1 10.4 115 5-134 72-192 (195)
46 PF10662 PduV-EutP: Ethanolami 99.1 1.7E-09 3.6E-14 77.1 9.4 92 12-132 52-143 (143)
47 cd01890 LepA LepA subfamily. 99.0 4.4E-09 9.6E-14 76.7 11.4 97 15-135 81-177 (179)
48 cd00881 GTP_translation_factor 99.0 2.9E-09 6.2E-14 77.9 10.3 99 15-135 76-187 (189)
49 TIGR02528 EutP ethanolamine ut 99.0 2.9E-09 6.3E-14 75.0 9.8 90 13-131 52-141 (142)
50 cd04171 SelB SelB subfamily. 99.0 3.2E-09 7E-14 75.9 9.9 98 13-132 64-163 (164)
51 PRK00093 GTP-binding protein D 99.0 2.5E-09 5.5E-14 88.9 10.3 111 19-134 250-363 (435)
52 TIGR03156 GTP_HflX GTP-binding 99.0 3E-09 6.6E-14 86.5 10.1 89 14-133 259-350 (351)
53 PRK03003 GTP-binding protein D 99.0 4.6E-09 1E-13 88.5 10.6 120 12-136 280-403 (472)
54 TIGR02729 Obg_CgtA Obg family 99.0 3.2E-09 6.9E-14 85.7 9.1 93 17-134 228-328 (329)
55 PF02421 FeoB_N: Ferrous iron 99.0 1.5E-10 3.3E-15 83.8 0.9 81 22-130 76-156 (156)
56 cd01898 Obg Obg subfamily. Th 99.0 3.7E-09 8E-14 76.3 8.1 90 19-133 73-169 (170)
57 cd01879 FeoB Ferrous iron tran 99.0 5.1E-09 1.1E-13 74.5 8.5 84 23-134 73-156 (158)
58 PRK10512 selenocysteinyl-tRNA- 98.9 1.4E-08 3.1E-13 88.0 12.7 107 5-136 58-167 (614)
59 cd01895 EngA2 EngA2 subfamily. 98.9 1.9E-08 4.1E-13 72.1 11.3 93 19-132 79-172 (174)
60 PRK12299 obgE GTPase CgtA; Rev 98.9 6.7E-09 1.4E-13 84.0 9.8 94 19-136 231-329 (335)
61 PRK12736 elongation factor Tu; 98.9 1.7E-08 3.6E-13 83.4 12.3 118 5-135 82-201 (394)
62 cd01891 TypA_BipA TypA (tyrosi 98.9 1.7E-08 3.8E-13 75.1 10.9 106 17-135 81-192 (194)
63 CHL00071 tufA elongation facto 98.9 2.1E-08 4.5E-13 83.2 12.0 123 5-135 82-211 (409)
64 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 3E-08 6.5E-13 71.3 11.4 102 14-135 63-166 (168)
65 PRK09518 bifunctional cytidyla 98.9 1E-08 2.2E-13 90.4 10.5 111 19-135 527-641 (712)
66 PTZ00327 eukaryotic translatio 98.9 1.5E-08 3.2E-13 85.1 10.7 107 6-136 125-234 (460)
67 PRK00049 elongation factor Tu; 98.9 3.9E-08 8.4E-13 81.2 12.7 116 5-135 82-203 (396)
68 TIGR03680 eif2g_arch translati 98.9 6.7E-08 1.4E-12 80.1 13.7 102 12-135 92-196 (406)
69 cd04151 Arl1 Arl1 subfamily. 98.9 1.1E-08 2.4E-13 73.3 8.1 97 14-132 56-157 (158)
70 PRK12298 obgE GTPase CgtA; Rev 98.9 1.6E-08 3.4E-13 83.4 9.8 93 19-136 232-334 (390)
71 cd04124 RabL2 RabL2 subfamily. 98.9 1.6E-08 3.4E-13 73.0 8.7 96 13-135 61-158 (161)
72 cd00880 Era_like Era (E. coli 98.9 3.4E-08 7.3E-13 69.2 10.2 91 17-133 68-162 (163)
73 cd04156 ARLTS1 ARLTS1 subfamil 98.9 1.3E-08 2.8E-13 72.8 8.1 97 14-132 57-159 (160)
74 cd04164 trmE TrmE (MnmE, ThdF, 98.9 2.6E-08 5.6E-13 70.5 9.4 82 19-134 75-156 (157)
75 PRK12296 obgE GTPase CgtA; Rev 98.9 2.7E-08 5.8E-13 84.0 10.8 93 19-136 231-341 (500)
76 cd01897 NOG NOG1 is a nucleola 98.8 1.8E-08 3.9E-13 72.6 8.4 84 24-133 79-166 (168)
77 PLN03127 Elongation factor Tu; 98.8 6.6E-08 1.4E-12 81.0 12.3 116 5-135 131-252 (447)
78 PRK04000 translation initiatio 98.8 8.9E-08 1.9E-12 79.5 13.0 103 12-136 97-202 (411)
79 cd04160 Arfrp1 Arfrp1 subfamil 98.8 1.5E-08 3.3E-13 72.9 7.5 97 14-132 63-166 (167)
80 PRK11058 GTPase HflX; Provisio 98.8 2.7E-08 5.9E-13 82.8 9.9 88 19-135 271-362 (426)
81 PRK05433 GTP-binding protein L 98.8 1.2E-07 2.7E-12 82.0 14.0 99 13-136 87-185 (600)
82 cd04149 Arf6 Arf6 subfamily. 98.8 2.1E-08 4.6E-13 73.1 8.0 96 14-131 66-166 (168)
83 PRK12735 elongation factor Tu; 98.8 7.1E-08 1.5E-12 79.7 12.0 120 5-135 82-203 (396)
84 TIGR00475 selB selenocysteine- 98.8 5.9E-08 1.3E-12 83.7 11.9 109 6-136 58-167 (581)
85 cd01878 HflX HflX subfamily. 98.8 7.1E-08 1.5E-12 72.1 11.0 86 19-133 115-203 (204)
86 TIGR01394 TypA_BipA GTP-bindin 98.8 1.3E-07 2.7E-12 81.8 13.8 116 5-136 71-192 (594)
87 cd04154 Arl2 Arl2 subfamily. 98.8 2.1E-08 4.5E-13 73.1 7.7 96 14-131 71-171 (173)
88 cd04157 Arl6 Arl6 subfamily. 98.8 3.3E-08 7.2E-13 70.6 8.2 97 14-132 58-161 (162)
89 PRK13768 GTPase; Provisional 98.8 5.2E-08 1.1E-12 75.9 9.7 91 25-138 129-250 (253)
90 cd04150 Arf1_5_like Arf1-Arf5- 98.8 5.8E-08 1.3E-12 70.0 9.4 96 14-131 57-157 (159)
91 cd04112 Rab26 Rab26 subfamily. 98.8 2.4E-08 5.2E-13 74.1 7.5 101 13-137 62-165 (191)
92 smart00177 ARF ARF-like small 98.8 3.9E-08 8.6E-13 72.0 8.5 99 14-134 70-173 (175)
93 cd01865 Rab3 Rab3 subfamily. 98.8 3.7E-08 7.9E-13 71.2 8.1 98 14-135 63-163 (165)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.8 3.9E-08 8.4E-13 72.6 8.2 100 13-134 64-169 (183)
95 cd04101 RabL4 RabL4 (Rab-like4 98.8 4.3E-08 9.4E-13 70.3 8.2 96 14-133 65-162 (164)
96 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 3.8E-08 8.3E-13 71.9 8.0 96 14-132 72-173 (174)
97 TIGR00485 EF-Tu translation el 98.8 1.4E-07 3E-12 77.9 12.0 118 5-135 82-201 (394)
98 PRK12297 obgE GTPase CgtA; Rev 98.8 7.2E-08 1.6E-12 80.2 10.2 90 19-136 231-328 (424)
99 PRK05291 trmE tRNA modificatio 98.8 7.1E-08 1.5E-12 80.9 10.3 83 19-136 289-371 (449)
100 cd01861 Rab6 Rab6 subfamily. 98.7 4.5E-08 9.8E-13 69.9 7.2 96 14-133 62-160 (161)
101 TIGR01393 lepA GTP-binding pro 98.7 1.5E-07 3.2E-12 81.5 11.6 99 13-136 83-181 (595)
102 smart00178 SAR Sar1p-like memb 98.7 6.4E-08 1.4E-12 71.5 8.2 98 14-133 74-183 (184)
103 cd04145 M_R_Ras_like M-Ras/R-R 98.7 5.6E-08 1.2E-12 69.6 7.6 95 15-133 64-162 (164)
104 PLN00223 ADP-ribosylation fact 98.7 8.9E-08 1.9E-12 70.7 8.8 98 13-135 73-178 (181)
105 cd01881 Obg_like The Obg-like 98.7 5.8E-08 1.3E-12 70.2 7.7 89 19-132 69-174 (176)
106 cd01892 Miro2 Miro2 subfamily. 98.7 6.2E-08 1.3E-12 70.6 7.8 95 17-134 70-165 (169)
107 cd04127 Rab27A Rab27a subfamil 98.7 5.8E-08 1.3E-12 70.9 7.6 98 13-134 75-176 (180)
108 cd01864 Rab19 Rab19 subfamily. 98.7 1.6E-07 3.4E-12 67.7 9.7 98 13-133 64-164 (165)
109 cd04138 H_N_K_Ras_like H-Ras/N 98.7 5.3E-08 1.2E-12 69.3 7.0 95 14-133 62-160 (162)
110 cd01862 Rab7 Rab7 subfamily. 98.7 1.7E-07 3.6E-12 67.6 9.6 99 14-135 62-167 (172)
111 cd00878 Arf_Arl Arf (ADP-ribos 98.7 6.4E-08 1.4E-12 69.1 7.1 97 14-132 56-157 (158)
112 cd04158 ARD1 ARD1 subfamily. 98.7 7.1E-08 1.5E-12 70.1 7.4 101 14-136 56-162 (169)
113 cd01883 EF1_alpha Eukaryotic e 98.7 1.4E-07 3E-12 71.8 9.1 92 12-104 89-191 (219)
114 cd01893 Miro1 Miro1 subfamily. 98.7 1.5E-07 3.3E-12 68.0 8.8 97 18-134 64-163 (166)
115 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.7 8.5E-08 1.8E-12 69.1 7.5 98 13-134 63-163 (166)
116 cd04136 Rap_like Rap-like subf 98.7 5.8E-08 1.2E-12 69.5 6.5 96 14-133 62-161 (163)
117 PTZ00133 ADP-ribosylation fact 98.7 1.6E-07 3.5E-12 69.3 8.9 100 13-135 73-178 (182)
118 smart00173 RAS Ras subfamily o 98.7 7.2E-08 1.6E-12 69.2 6.8 97 15-135 62-162 (164)
119 cd01866 Rab2 Rab2 subfamily. 98.7 1.1E-07 2.4E-12 68.9 7.8 99 13-135 65-166 (168)
120 PLN03126 Elongation factor Tu; 98.7 3.7E-07 8E-12 77.1 12.0 120 6-134 152-279 (478)
121 TIGR02034 CysN sulfate adenyly 98.7 2.3E-07 5.1E-12 76.9 10.6 94 5-103 87-182 (406)
122 cd04142 RRP22 RRP22 subfamily. 98.7 2.9E-07 6.4E-12 69.0 10.1 94 19-135 75-174 (198)
123 smart00175 RAB Rab subfamily o 98.7 1.3E-07 2.8E-12 67.6 7.7 98 14-135 62-162 (164)
124 cd04106 Rab23_lke Rab23-like s 98.7 1E-07 2.2E-12 68.2 7.1 96 13-132 63-160 (162)
125 cd01867 Rab8_Rab10_Rab13_like 98.7 1.6E-07 3.4E-12 68.0 8.1 97 14-134 65-164 (167)
126 PTZ00099 rab6; Provisional 98.7 1E-07 2.2E-12 70.3 7.2 99 14-136 42-143 (176)
127 cd00154 Rab Rab family. Rab G 98.7 1.5E-07 3.2E-12 66.3 7.8 94 14-131 62-158 (159)
128 PRK04213 GTP-binding protein; 98.7 5.3E-07 1.2E-11 67.2 11.2 91 21-136 87-193 (201)
129 CHL00189 infB translation init 98.6 3.9E-07 8.4E-12 80.3 11.9 96 15-134 309-409 (742)
130 PRK05124 cysN sulfate adenylyl 98.6 3.6E-07 7.8E-12 77.2 11.2 95 5-104 114-211 (474)
131 COG0218 Predicted GTPase [Gene 98.6 5.9E-07 1.3E-11 67.2 11.0 103 12-136 91-198 (200)
132 cd04109 Rab28 Rab28 subfamily. 98.6 1.3E-07 2.8E-12 71.6 7.7 98 14-135 63-166 (215)
133 cd04166 CysN_ATPS CysN_ATPS su 98.6 2E-07 4.4E-12 70.3 8.7 89 13-104 90-180 (208)
134 cd01868 Rab11_like Rab11-like. 98.6 1.4E-07 3.1E-12 67.7 7.6 97 13-133 64-163 (165)
135 cd04147 Ras_dva Ras-dva subfam 98.6 1.7E-07 3.7E-12 70.0 8.1 99 15-135 61-163 (198)
136 PRK00454 engB GTP-binding prot 98.6 4E-07 8.8E-12 67.3 10.0 93 21-136 103-195 (196)
137 cd04128 Spg1 Spg1p. Spg1p (se 98.6 1.4E-07 3E-12 69.8 7.4 103 14-136 62-167 (182)
138 cd04114 Rab30 Rab30 subfamily. 98.6 1.7E-07 3.8E-12 67.5 7.8 96 14-133 69-167 (169)
139 cd04119 RJL RJL (RabJ-Like) su 98.6 1.8E-07 3.9E-12 66.9 7.8 97 14-134 62-166 (168)
140 TIGR03598 GTPase_YsxC ribosome 98.6 1.8E-07 4E-12 68.7 8.0 76 23-103 99-175 (179)
141 cd04122 Rab14 Rab14 subfamily. 98.6 1.9E-07 4E-12 67.5 7.8 97 13-133 63-162 (166)
142 cd04120 Rab12 Rab12 subfamily. 98.6 3.1E-07 6.8E-12 69.2 9.3 100 12-134 60-162 (202)
143 cd04159 Arl10_like Arl10-like 98.6 4.3E-07 9.3E-12 64.0 9.5 97 14-132 57-158 (159)
144 cd00879 Sar1 Sar1 subfamily. 98.6 2.5E-07 5.5E-12 68.2 8.4 98 14-133 76-189 (190)
145 PRK09554 feoB ferrous iron tra 98.6 2.1E-07 4.5E-12 82.6 9.3 86 22-135 83-168 (772)
146 cd01863 Rab18 Rab18 subfamily. 98.6 1.4E-07 3E-12 67.5 6.7 95 14-133 62-160 (161)
147 PRK12317 elongation factor 1-a 98.6 4E-07 8.7E-12 75.8 10.4 94 6-103 92-190 (425)
148 KOG1489|consensus 98.6 3.2E-07 7E-12 72.9 8.8 89 19-133 269-365 (366)
149 cd01860 Rab5_related Rab5-rela 98.6 2.6E-07 5.6E-12 66.1 7.7 98 13-134 62-162 (163)
150 cd04144 Ras2 Ras2 subfamily. 98.6 2.5E-07 5.4E-12 68.6 7.7 98 14-135 60-163 (190)
151 PTZ00369 Ras-like protein; Pro 98.6 1.3E-07 2.8E-12 70.1 6.1 98 14-135 66-167 (189)
152 cd04110 Rab35 Rab35 subfamily. 98.6 2.7E-07 5.8E-12 69.0 7.9 98 13-134 67-166 (199)
153 PRK10218 GTP-binding protein; 98.6 6.1E-07 1.3E-11 77.8 11.0 110 13-136 81-196 (607)
154 cd04139 RalA_RalB RalA/RalB su 98.6 2.7E-07 5.8E-12 65.8 7.5 97 14-134 61-161 (164)
155 cd04175 Rap1 Rap1 subgroup. T 98.6 1.7E-07 3.8E-12 67.3 6.5 97 14-134 62-162 (164)
156 cd04132 Rho4_like Rho4-like su 98.6 3.6E-07 7.8E-12 67.2 8.3 101 14-135 62-167 (187)
157 cd04121 Rab40 Rab40 subfamily. 98.6 2.5E-07 5.3E-12 69.0 7.4 100 12-135 66-167 (189)
158 cd04123 Rab21 Rab21 subfamily. 98.6 2.8E-07 6.1E-12 65.5 7.4 96 14-133 62-160 (162)
159 cd01876 YihA_EngB The YihA (En 98.6 1.2E-06 2.5E-11 62.3 10.4 89 23-133 80-169 (170)
160 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 3.3E-07 7.3E-12 67.0 7.6 98 14-135 63-164 (172)
161 cd04108 Rab36_Rab34 Rab34/Rab3 98.6 4.4E-07 9.6E-12 66.2 8.2 101 14-136 62-166 (170)
162 cd04176 Rap2 Rap2 subgroup. T 98.6 1.3E-07 2.7E-12 67.9 5.2 95 15-133 63-161 (163)
163 PRK05506 bifunctional sulfate 98.5 1E-06 2.2E-11 76.9 11.6 94 5-103 111-206 (632)
164 cd04118 Rab24 Rab24 subfamily. 98.5 3.9E-07 8.5E-12 67.4 7.5 100 14-134 63-165 (193)
165 TIGR00437 feoB ferrous iron tr 98.5 2.7E-07 5.9E-12 79.8 7.5 85 22-134 70-154 (591)
166 smart00174 RHO Rho (Ras homolo 98.5 3.4E-07 7.4E-12 66.3 7.0 100 15-134 60-171 (174)
167 PTZ00141 elongation factor 1- 98.5 1.6E-06 3.5E-11 72.7 11.8 95 5-103 92-198 (446)
168 cd04162 Arl9_Arfrp2_like Arl9/ 98.5 3.2E-07 6.9E-12 66.5 6.7 102 14-131 57-162 (164)
169 TIGR00491 aIF-2 translation in 98.5 9E-07 2E-11 76.5 10.5 53 15-68 83-135 (590)
170 cd04125 RabA_like RabA-like su 98.5 5.1E-07 1.1E-11 66.6 7.8 98 14-135 62-162 (188)
171 cd04143 Rhes_like Rhes_like su 98.5 1.1E-06 2.4E-11 68.3 9.9 115 19-156 66-196 (247)
172 cd04107 Rab32_Rab38 Rab38/Rab3 98.5 1E-06 2.2E-11 65.9 9.4 100 13-135 62-168 (201)
173 COG0536 Obg Predicted GTPase [ 98.5 7.3E-07 1.6E-11 71.5 8.9 94 19-136 232-334 (369)
174 cd04113 Rab4 Rab4 subfamily. 98.5 4.4E-07 9.5E-12 64.9 7.1 95 14-132 62-159 (161)
175 cd04111 Rab39 Rab39 subfamily. 98.5 4.1E-07 8.9E-12 68.8 7.3 100 13-136 64-167 (211)
176 PLN03110 Rab GTPase; Provision 98.5 5E-07 1.1E-11 68.6 7.7 99 13-135 73-174 (216)
177 cd00876 Ras Ras family. The R 98.5 5.7E-07 1.2E-11 63.8 7.5 96 14-133 60-159 (160)
178 cd01871 Rac1_like Rac1-like su 98.5 5.1E-07 1.1E-11 66.2 7.4 99 14-132 62-172 (174)
179 cd04140 ARHI_like ARHI subfami 98.5 4.1E-07 8.8E-12 65.7 6.7 94 16-133 64-163 (165)
180 COG0532 InfB Translation initi 98.5 1.2E-06 2.5E-11 73.7 10.2 106 5-134 62-169 (509)
181 PF00025 Arf: ADP-ribosylation 98.5 3.9E-07 8.4E-12 67.0 6.7 98 14-133 71-174 (175)
182 TIGR00487 IF-2 translation ini 98.5 1.2E-06 2.5E-11 75.8 10.3 101 5-132 142-247 (587)
183 PRK05306 infB translation init 98.5 1.3E-06 2.9E-11 77.5 10.8 93 17-133 353-450 (787)
184 cd01886 EF-G Elongation factor 98.5 9.6E-07 2.1E-11 69.5 8.9 61 5-69 71-131 (270)
185 TIGR00483 EF-1_alpha translati 98.5 3E-06 6.4E-11 70.6 12.0 95 6-103 93-192 (426)
186 KOG1423|consensus 98.5 6.9E-07 1.5E-11 70.8 7.7 57 12-69 144-200 (379)
187 PRK00007 elongation factor G; 98.5 1E-06 2.3E-11 77.6 9.3 61 5-69 82-142 (693)
188 KOG0462|consensus 98.4 9.1E-07 2E-11 74.7 8.3 102 5-136 132-236 (650)
189 cd04168 TetM_like Tet(M)-like 98.4 2.7E-06 6E-11 65.6 10.5 55 13-69 77-131 (237)
190 cd00877 Ran Ran (Ras-related n 98.4 5.1E-07 1.1E-11 65.5 5.9 91 19-135 67-159 (166)
191 PLN03118 Rab family protein; P 98.4 1.1E-06 2.4E-11 66.2 7.9 98 14-135 75-177 (211)
192 TIGR00450 mnmE_trmE_thdF tRNA 98.4 2.2E-06 4.7E-11 71.9 10.2 70 19-103 277-346 (442)
193 smart00176 RAN Ran (Ras-relate 98.4 1E-06 2.2E-11 66.3 7.1 97 13-135 56-154 (200)
194 cd04116 Rab9 Rab9 subfamily. 98.4 2.8E-06 6.1E-11 61.3 9.1 96 13-132 66-168 (170)
195 KOG1145|consensus 98.4 2.7E-06 5.9E-11 71.9 10.1 104 5-134 208-315 (683)
196 cd04155 Arl3 Arl3 subfamily. 98.4 1.8E-06 3.9E-11 62.5 8.0 96 15-132 72-172 (173)
197 PRK14845 translation initiatio 98.4 2.8E-06 6.2E-11 77.3 10.8 49 19-68 544-592 (1049)
198 cd01882 BMS1 Bms1. Bms1 is an 98.4 2.2E-06 4.7E-11 65.6 8.8 84 15-103 95-181 (225)
199 cd04148 RGK RGK subfamily. Th 98.4 7.2E-07 1.6E-11 68.0 5.9 91 21-135 68-163 (221)
200 COG2229 Predicted GTPase [Gene 98.4 3.9E-06 8.4E-11 61.8 9.3 101 4-133 74-176 (187)
201 cd01874 Cdc42 Cdc42 subfamily. 98.4 1.3E-06 2.8E-11 64.0 6.9 99 14-132 62-172 (175)
202 PRK04004 translation initiatio 98.4 4E-06 8.6E-11 72.6 10.8 53 15-68 85-137 (586)
203 cd04126 Rab20 Rab20 subfamily. 98.4 2.5E-06 5.4E-11 65.2 8.5 102 15-134 58-189 (220)
204 PRK12739 elongation factor G; 98.4 2.2E-06 4.8E-11 75.5 9.3 61 5-69 80-140 (691)
205 cd01875 RhoG RhoG subfamily. 98.4 2.5E-06 5.4E-11 63.4 8.3 104 12-135 62-177 (191)
206 cd04146 RERG_RasL11_like RERG/ 98.4 1.1E-06 2.3E-11 63.3 6.1 92 19-134 66-163 (165)
207 cd00882 Ras_like_GTPase Ras-li 98.4 2E-06 4.4E-11 59.2 7.1 89 19-131 63-156 (157)
208 PLN03071 GTP-binding nuclear p 98.3 1E-06 2.2E-11 67.1 5.9 96 14-135 75-172 (219)
209 cd04130 Wrch_1 Wrch-1 subfamil 98.3 1.5E-06 3.3E-11 63.2 6.5 96 14-130 61-169 (173)
210 cd04137 RheB Rheb (Ras Homolog 98.3 2.4E-06 5.2E-11 62.3 7.6 99 14-136 62-164 (180)
211 cd04134 Rho3 Rho3 subfamily. 98.3 1.4E-06 3.1E-11 64.5 6.4 101 15-135 62-174 (189)
212 cd04161 Arl2l1_Arl13_like Arl2 98.3 2.8E-06 6.1E-11 61.6 7.8 57 13-69 55-115 (167)
213 cd04115 Rab33B_Rab33A Rab33B/R 98.3 2.5E-06 5.4E-11 61.9 7.4 97 16-133 67-167 (170)
214 cd00157 Rho Rho (Ras homology) 98.3 1.4E-06 3E-11 62.7 5.9 93 20-132 67-170 (171)
215 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.3 4.8E-06 1E-10 64.1 9.1 99 13-133 73-186 (232)
216 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.3 3.7E-06 8E-11 62.3 8.1 99 14-133 66-178 (182)
217 PLN03108 Rab family protein; P 98.3 3.9E-06 8.6E-11 63.3 8.0 97 13-133 67-166 (210)
218 PLN00043 elongation factor 1-a 98.3 1E-05 2.3E-10 67.9 11.0 94 6-103 93-198 (447)
219 COG4917 EutP Ethanolamine util 98.3 8.9E-06 1.9E-10 56.6 8.6 85 19-132 59-143 (148)
220 PRK00741 prfC peptide chain re 98.3 1.2E-05 2.5E-10 68.9 11.3 55 13-69 92-146 (526)
221 cd04117 Rab15 Rab15 subfamily. 98.3 4E-06 8.7E-11 60.4 7.4 95 14-132 62-159 (161)
222 cd01870 RhoA_like RhoA-like su 98.3 3.3E-06 7.1E-11 61.2 6.9 100 15-134 63-174 (175)
223 KOG1191|consensus 98.3 2.9E-06 6.3E-11 70.8 7.0 103 4-134 331-449 (531)
224 PF03193 DUF258: Protein of un 98.3 6.9E-07 1.5E-11 65.0 3.0 43 91-160 11-53 (161)
225 cd04177 RSR1 RSR1 subgroup. R 98.3 3.3E-06 7.2E-11 61.0 6.6 96 15-133 63-162 (168)
226 TIGR00231 small_GTP small GTP- 98.3 2E-06 4.2E-11 60.1 5.2 85 20-131 69-160 (161)
227 COG3276 SelB Selenocysteine-sp 98.2 1.4E-05 3E-10 66.0 10.7 101 6-134 58-161 (447)
228 cd01873 RhoBTB RhoBTB subfamil 98.2 2.3E-06 5E-11 64.1 5.8 91 20-132 83-193 (195)
229 COG0370 FeoB Fe2+ transport sy 98.2 9.3E-07 2E-11 76.2 3.9 87 23-137 80-166 (653)
230 cd04133 Rop_like Rop subfamily 98.2 3.4E-06 7.4E-11 62.2 6.3 99 15-134 63-172 (176)
231 COG0481 LepA Membrane GTPase L 98.2 1.2E-05 2.7E-10 67.1 10.0 105 19-148 94-201 (603)
232 PRK12740 elongation factor G; 98.2 1.3E-05 2.8E-10 70.4 10.6 55 13-69 73-127 (668)
233 TIGR00503 prfC peptide chain r 98.2 2E-05 4.3E-10 67.5 11.3 60 5-68 87-146 (527)
234 TIGR00484 EF-G translation elo 98.2 8E-06 1.7E-10 72.0 9.0 61 5-69 82-142 (689)
235 PRK13351 elongation factor G; 98.2 1.7E-05 3.6E-10 69.9 10.9 55 13-69 86-140 (687)
236 cd04131 Rnd Rnd subfamily. Th 98.2 7.9E-06 1.7E-10 60.2 7.6 98 14-132 62-173 (178)
237 cd04135 Tc10 TC10 subfamily. 98.2 8.7E-06 1.9E-10 58.9 7.4 95 19-133 66-172 (174)
238 COG5257 GCD11 Translation init 98.2 2.1E-05 4.6E-10 62.9 9.9 104 6-136 94-203 (415)
239 cd04167 Snu114p Snu114p subfam 98.1 1.1E-05 2.5E-10 60.9 7.8 53 13-67 84-136 (213)
240 cd01896 DRG The developmentall 98.1 3E-05 6.5E-10 59.7 9.9 50 55-135 177-226 (233)
241 cd01885 EF2 EF2 (for archaea a 98.1 8.9E-06 1.9E-10 62.3 6.4 58 6-67 81-138 (222)
242 PRK09435 membrane ATPase/prote 98.1 1.2E-05 2.6E-10 65.0 7.2 92 20-135 165-260 (332)
243 cd04104 p47_IIGP_like p47 (47- 98.0 1.3E-05 2.8E-10 60.0 6.3 99 21-137 77-186 (197)
244 COG1217 TypA Predicted membran 98.0 5.1E-05 1.1E-09 63.4 9.8 107 16-136 84-196 (603)
245 cd04129 Rho2 Rho2 subfamily. 98.0 2E-05 4.3E-10 58.2 6.9 94 21-135 69-173 (187)
246 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.0 4.3E-05 9.3E-10 58.5 8.6 56 13-68 61-119 (222)
247 cd04103 Centaurin_gamma Centau 98.0 2.7E-05 5.8E-10 56.2 7.1 91 21-132 62-156 (158)
248 KOG0076|consensus 98.0 1.5E-05 3.3E-10 58.4 5.7 103 12-137 80-189 (197)
249 KOG0075|consensus 98.0 0.00016 3.4E-09 51.8 10.3 97 14-135 78-182 (186)
250 KOG0092|consensus 97.9 2.1E-05 4.5E-10 58.4 5.4 91 23-137 76-169 (200)
251 COG0486 ThdF Predicted GTPase 97.9 5.2E-06 1.1E-10 69.0 2.3 21 140-160 215-235 (454)
252 KOG0078|consensus 97.9 6.2E-05 1.4E-09 56.6 7.7 99 12-134 72-173 (207)
253 cd04169 RF3 RF3 subfamily. Pe 97.9 0.00011 2.3E-09 57.8 9.2 55 13-69 84-138 (267)
254 smart00053 DYNc Dynamin, GTPas 97.9 5.6E-05 1.2E-09 58.5 7.3 57 12-69 149-207 (240)
255 cd04170 EF-G_bact Elongation f 97.9 3.7E-05 8E-10 60.2 6.2 56 12-69 76-131 (268)
256 COG1084 Predicted GTPase [Gene 97.8 0.00015 3.2E-09 58.2 9.1 86 24-134 247-335 (346)
257 KOG0073|consensus 97.8 0.00015 3.3E-09 52.7 8.2 87 12-103 71-163 (185)
258 PTZ00416 elongation factor 2; 97.8 6.4E-05 1.4E-09 67.7 6.7 59 5-67 99-157 (836)
259 KOG1423|consensus 97.8 1E-05 2.2E-10 64.2 1.3 20 141-160 71-90 (379)
260 KOG0461|consensus 97.7 0.00066 1.4E-08 55.1 11.3 104 14-134 84-192 (522)
261 TIGR00073 hypB hydrogenase acc 97.7 0.00014 3.1E-09 54.7 7.1 58 54-133 148-205 (207)
262 KOG0410|consensus 97.7 8.9E-05 1.9E-09 59.5 6.1 93 6-135 241-341 (410)
263 PF06858 NOG1: Nucleolar GTP-b 97.7 8.2E-05 1.8E-09 44.7 4.2 43 23-65 12-58 (58)
264 KOG1249|consensus 97.7 0.00014 3E-09 61.5 7.0 116 19-160 105-231 (572)
265 KOG0094|consensus 97.7 0.00042 9.1E-09 51.8 8.5 103 11-137 81-187 (221)
266 TIGR02836 spore_IV_A stage IV 97.6 0.00028 6.1E-09 58.7 7.9 74 19-103 138-220 (492)
267 PLN00116 translation elongatio 97.6 0.00018 4E-09 64.8 7.5 58 6-67 106-163 (843)
268 KOG1191|consensus 97.6 2.7E-05 5.9E-10 65.2 1.7 21 140-160 266-286 (531)
269 PTZ00132 GTP-binding nuclear p 97.6 0.00041 9E-09 52.2 8.0 107 15-152 72-180 (215)
270 KOG0084|consensus 97.5 0.0005 1.1E-08 51.3 7.3 100 12-135 69-172 (205)
271 TIGR03156 GTP_HflX GTP-binding 97.5 4.9E-05 1.1E-09 62.0 1.9 19 142-160 189-207 (351)
272 TIGR00101 ureG urease accessor 97.5 0.00059 1.3E-08 51.3 7.5 84 25-135 113-196 (199)
273 PF01926 MMR_HSR1: 50S ribosom 97.5 0.00023 5E-09 48.3 4.8 47 14-63 70-116 (116)
274 PRK12298 obgE GTPase CgtA; Rev 97.4 3.1E-05 6.7E-10 64.0 0.2 18 143-160 160-177 (390)
275 PRK07560 elongation factor EF- 97.4 0.00034 7.5E-09 62.2 6.6 59 5-67 94-152 (731)
276 KOG0072|consensus 97.4 0.00086 1.9E-08 48.0 7.2 102 13-136 74-180 (182)
277 COG1084 Predicted GTPase [Gene 97.4 9.2E-05 2E-09 59.3 2.6 20 141-160 167-186 (346)
278 COG3596 Predicted GTPase [Gene 97.4 0.0018 4E-08 50.9 9.7 108 11-137 104-224 (296)
279 TIGR00450 mnmE_trmE_thdF tRNA 97.4 6.8E-05 1.5E-09 62.9 1.7 21 140-160 201-221 (442)
280 COG5256 TEF1 Translation elong 97.4 0.0012 2.5E-08 54.5 8.7 116 13-134 98-222 (428)
281 TIGR00750 lao LAO/AO transport 97.4 0.0014 3.1E-08 52.2 9.0 90 21-134 144-237 (300)
282 cd01899 Ygr210 Ygr210 subfamil 97.4 0.00052 1.1E-08 55.3 6.5 58 53-137 213-271 (318)
283 KOG0468|consensus 97.4 0.00033 7.2E-09 60.9 5.4 58 5-66 204-261 (971)
284 PRK05291 trmE tRNA modificatio 97.3 9.2E-05 2E-09 62.3 1.8 21 140-160 213-233 (449)
285 COG0536 Obg Predicted GTPase [ 97.3 4.1E-05 8.8E-10 61.6 -0.4 18 143-160 160-177 (369)
286 PF00071 Ras: Ras family; Int 97.3 0.00032 6.9E-09 50.0 4.3 91 19-133 66-159 (162)
287 COG2895 CysN GTPases - Sulfate 97.3 0.00056 1.2E-08 55.6 5.9 94 5-106 93-191 (431)
288 PRK12299 obgE GTPase CgtA; Rev 97.3 6E-05 1.3E-09 61.1 0.3 18 143-160 159-176 (335)
289 TIGR00490 aEF-2 translation el 97.3 0.00065 1.4E-08 60.4 6.6 59 6-68 94-152 (720)
290 KOG0093|consensus 97.3 0.00073 1.6E-08 48.5 5.4 99 12-134 81-182 (193)
291 KOG1144|consensus 97.2 0.0015 3.2E-08 57.6 7.8 48 19-67 558-605 (1064)
292 KOG0070|consensus 97.2 0.00085 1.9E-08 49.5 5.4 101 12-135 72-178 (181)
293 PRK12297 obgE GTPase CgtA; Rev 97.2 9.8E-05 2.1E-09 61.6 0.4 18 143-160 159-176 (424)
294 PRK12296 obgE GTPase CgtA; Rev 97.2 0.00011 2.4E-09 62.4 0.5 18 143-160 160-177 (500)
295 PRK15494 era GTPase Era; Provi 97.2 0.00013 2.9E-09 59.2 0.8 20 141-160 51-70 (339)
296 PRK10463 hydrogenase nickel in 97.2 0.00082 1.8E-08 53.4 5.2 56 55-133 231-287 (290)
297 TIGR00991 3a0901s02IAP34 GTP-b 97.1 0.00023 5E-09 57.0 2.0 35 124-160 22-56 (313)
298 cd01878 HflX HflX subfamily. 97.1 0.00031 6.7E-09 52.3 2.3 19 142-160 41-59 (204)
299 TIGR02729 Obg_CgtA Obg family 97.1 0.00016 3.4E-09 58.6 0.5 18 143-160 158-175 (329)
300 PRK11058 GTPase HflX; Provisio 97.1 0.00021 4.5E-09 59.8 1.2 18 143-160 198-215 (426)
301 KOG1532|consensus 97.0 0.0071 1.5E-07 47.8 9.2 83 26-134 149-263 (366)
302 COG1163 DRG Predicted GTPase [ 97.0 0.00016 3.5E-09 57.9 0.1 18 143-160 64-81 (365)
303 cd01852 AIG1 AIG1 (avrRpt2-ind 97.0 0.0048 1E-07 45.8 7.7 100 19-136 78-185 (196)
304 cd04105 SR_beta Signal recogni 97.0 0.0014 3.1E-08 49.2 4.7 61 6-69 56-124 (203)
305 cd04102 RabL3 RabL3 (Rab-like3 96.9 0.0046 9.9E-08 46.6 7.3 87 14-103 67-175 (202)
306 COG1163 DRG Predicted GTPase [ 96.8 0.0032 6.9E-08 50.7 5.7 51 54-135 239-289 (365)
307 COG0050 TufB GTPases - transla 96.8 0.01 2.3E-07 47.4 8.4 55 13-69 88-143 (394)
308 KOG1490|consensus 96.8 0.0014 3.1E-08 55.4 3.5 21 140-160 166-186 (620)
309 cd01850 CDC_Septin CDC/Septin. 96.7 0.0039 8.4E-08 49.2 5.9 44 24-69 114-158 (276)
310 PF00350 Dynamin_N: Dynamin fa 96.7 0.0039 8.6E-08 44.7 5.5 48 16-64 120-168 (168)
311 PF08477 Miro: Miro-like prote 96.6 0.0015 3.2E-08 44.2 2.2 46 20-65 69-119 (119)
312 KOG1489|consensus 96.6 0.00054 1.2E-08 54.8 -0.0 18 143-160 197-214 (366)
313 KOG1490|consensus 96.6 0.0075 1.6E-07 51.2 6.6 73 27-103 250-326 (620)
314 PRK09602 translation-associate 96.5 0.006 1.3E-07 50.7 5.9 55 54-136 217-272 (396)
315 KOG0095|consensus 96.5 0.015 3.3E-07 41.9 7.1 59 11-69 66-127 (213)
316 PF03029 ATP_bind_1: Conserved 96.5 0.007 1.5E-07 46.8 5.9 101 14-134 111-236 (238)
317 COG1703 ArgK Putative periplas 96.5 0.0017 3.7E-08 51.6 2.1 20 141-160 50-69 (323)
318 COG0480 FusA Translation elong 96.5 0.011 2.4E-07 52.3 7.3 61 5-69 83-143 (697)
319 PF03308 ArgK: ArgK protein; 96.4 0.016 3.4E-07 45.4 7.2 87 20-134 138-229 (266)
320 COG0378 HypB Ni2+-binding GTPa 96.4 0.0062 1.3E-07 45.6 4.7 56 56-133 144-199 (202)
321 KOG0466|consensus 96.4 0.016 3.4E-07 46.6 7.0 103 6-135 133-241 (466)
322 KOG0410|consensus 96.4 0.0011 2.4E-08 53.4 0.5 18 143-160 179-196 (410)
323 KOG0098|consensus 96.3 0.0064 1.4E-07 45.3 4.4 84 12-103 66-153 (216)
324 PF05049 IIGP: Interferon-indu 96.3 0.0025 5.4E-08 52.4 2.0 19 142-160 35-53 (376)
325 KOG0087|consensus 96.3 0.011 2.5E-07 44.7 5.4 86 11-103 73-161 (222)
326 KOG0083|consensus 96.2 0.0069 1.5E-07 42.9 3.9 99 12-134 58-159 (192)
327 KOG0071|consensus 96.2 0.018 4E-07 41.1 5.9 58 12-69 72-133 (180)
328 PLN00023 GTP-binding protein; 96.2 0.0063 1.4E-07 49.2 4.0 58 12-69 94-166 (334)
329 KOG0088|consensus 96.2 0.0083 1.8E-07 43.7 4.0 88 23-134 84-174 (218)
330 COG5258 GTPBP1 GTPase [General 96.1 0.035 7.7E-07 45.9 8.0 46 23-69 225-270 (527)
331 KOG0395|consensus 96.0 0.032 7E-07 41.9 7.0 92 20-135 70-165 (196)
332 PRK05439 pantothenate kinase; 96.0 0.0055 1.2E-07 49.2 3.0 39 122-160 66-104 (311)
333 COG2262 HflX GTPases [General 95.9 0.0062 1.4E-07 50.3 3.0 19 142-160 192-210 (411)
334 KOG0394|consensus 95.8 0.12 2.6E-06 38.5 8.9 93 20-133 77-176 (210)
335 TIGR00993 3a0901s04IAP86 chlor 95.8 0.003 6.6E-08 55.4 0.5 19 142-160 118-136 (763)
336 PLN03210 Resistant to P. syrin 95.8 0.058 1.3E-06 50.6 8.8 141 16-160 58-225 (1153)
337 COG4108 PrfC Peptide chain rel 95.7 0.065 1.4E-06 45.0 8.0 50 19-69 99-148 (528)
338 KOG1486|consensus 95.7 0.004 8.7E-08 48.7 0.9 17 143-159 63-79 (364)
339 PF09439 SRPRB: Signal recogni 95.7 0.011 2.3E-07 44.0 3.1 48 21-69 72-127 (181)
340 KOG0458|consensus 95.6 0.048 1E-06 47.0 6.9 118 13-134 268-396 (603)
341 TIGR00554 panK_bact pantothena 95.6 0.01 2.3E-07 47.2 2.9 31 130-160 50-80 (290)
342 PRK09435 membrane ATPase/prote 95.4 0.017 3.6E-07 47.0 3.5 20 141-160 55-74 (332)
343 KOG0079|consensus 95.4 0.088 1.9E-06 38.0 6.7 85 12-103 68-154 (198)
344 cd03112 CobW_like The function 95.4 0.015 3.2E-07 42.0 2.8 58 5-66 99-158 (158)
345 smart00275 G_alpha G protein a 95.4 0.017 3.6E-07 47.1 3.4 56 14-69 197-266 (342)
346 KOG0081|consensus 95.3 0.15 3.3E-06 37.2 7.8 85 12-103 78-166 (219)
347 PRK10463 hydrogenase nickel in 95.3 0.015 3.4E-07 46.2 2.8 20 141-160 103-122 (290)
348 COG3596 Predicted GTPase [Gene 95.2 0.0059 1.3E-07 48.1 0.3 20 141-160 38-57 (296)
349 COG1100 GTPase SAR1 and relate 95.2 0.5 1.1E-05 35.1 10.8 58 12-69 65-126 (219)
350 COG0466 Lon ATP-dependent Lon 95.2 0.019 4.2E-07 50.6 3.3 40 121-160 326-368 (782)
351 cd00066 G-alpha G protein alph 95.2 0.018 3.8E-07 46.4 3.0 56 14-69 174-243 (317)
352 smart00763 AAA_PrkA PrkA AAA d 95.0 0.022 4.8E-07 46.6 3.2 40 121-160 54-96 (361)
353 COG3640 CooC CO dehydrogenase 94.8 0.022 4.8E-07 44.0 2.4 48 19-67 150-198 (255)
354 cd01882 BMS1 Bms1. Bms1 is an 94.8 0.012 2.6E-07 45.0 0.9 20 141-160 38-57 (225)
355 COG1703 ArgK Putative periplas 94.6 0.23 5.1E-06 39.8 7.7 26 93-135 229-254 (323)
356 PRK09866 hypothetical protein; 94.5 0.025 5.4E-07 49.7 2.3 18 143-160 70-87 (741)
357 KOG1547|consensus 94.5 0.047 1E-06 42.5 3.6 39 120-160 26-64 (336)
358 COG0523 Putative GTPases (G3E 94.4 0.13 2.8E-06 41.7 6.0 42 24-69 116-160 (323)
359 KOG2486|consensus 94.4 0.015 3.3E-07 46.0 0.6 19 142-160 136-154 (320)
360 KOG0467|consensus 94.3 0.068 1.5E-06 47.5 4.5 56 6-65 80-135 (887)
361 PLN02200 adenylate kinase fami 94.1 0.022 4.9E-07 43.9 1.1 20 140-159 41-60 (234)
362 KOG1487|consensus 94.1 0.025 5.4E-07 44.5 1.4 18 143-160 60-77 (358)
363 COG1072 CoaA Panthothenate kin 94.1 0.052 1.1E-06 42.8 3.1 21 140-160 80-100 (283)
364 KOG0054|consensus 94.0 0.017 3.6E-07 54.6 0.3 19 142-160 1166-1184(1381)
365 PRK14974 cell division protein 94.0 0.056 1.2E-06 44.0 3.3 19 141-159 139-157 (336)
366 KOG0077|consensus 93.8 0.11 2.3E-06 38.2 4.1 57 13-69 76-136 (193)
367 PRK05428 HPr kinase/phosphoryl 93.8 0.22 4.9E-06 40.0 6.3 40 122-161 115-165 (308)
368 KOG2486|consensus 93.8 0.064 1.4E-06 42.5 3.1 89 28-134 223-315 (320)
369 KOG1143|consensus 93.7 0.49 1.1E-05 39.3 8.0 44 25-69 275-318 (591)
370 TIGR01526 nadR_NMN_Atrans nico 93.4 0.028 6E-07 45.5 0.6 18 143-160 163-180 (325)
371 PLN03126 Elongation factor Tu; 93.4 0.033 7.1E-07 47.4 1.0 21 140-160 79-99 (478)
372 PLN03127 Elongation factor Tu; 93.3 0.036 7.7E-07 46.8 1.0 21 140-160 59-79 (447)
373 KOG2004|consensus 93.3 0.1 2.3E-06 46.3 3.9 39 121-159 414-455 (906)
374 PRK15455 PrkA family serine pr 93.3 0.049 1.1E-06 47.4 1.9 40 121-160 79-121 (644)
375 COG5192 BMS1 GTP-binding prote 93.1 0.038 8.2E-07 47.9 1.0 21 140-160 67-87 (1077)
376 KOG1954|consensus 93.0 0.17 3.7E-06 41.8 4.5 48 21-69 178-226 (532)
377 KOG1707|consensus 92.9 0.19 4.1E-06 43.5 4.8 85 19-107 74-164 (625)
378 TIGR00064 ftsY signal recognit 92.9 0.11 2.3E-06 41.0 3.2 19 141-159 71-89 (272)
379 KOG0460|consensus 92.9 1.1 2.4E-05 36.8 8.9 49 20-69 136-185 (449)
380 PRK11889 flhF flagellar biosyn 92.9 0.089 1.9E-06 43.9 2.7 18 142-159 241-258 (436)
381 TIGR03499 FlhF flagellar biosy 92.8 0.1 2.2E-06 41.3 3.0 19 141-159 193-211 (282)
382 PRK08154 anaerobic benzoate ca 92.8 0.096 2.1E-06 42.0 2.8 19 141-159 132-150 (309)
383 COG4987 CydC ABC-type transpor 92.8 0.04 8.7E-07 47.2 0.6 18 142-159 364-381 (573)
384 COG1134 TagH ABC-type polysacc 92.7 0.046 9.9E-07 42.4 0.8 19 142-160 53-71 (249)
385 KOG0074|consensus 92.7 0.057 1.2E-06 38.7 1.3 56 14-69 75-134 (185)
386 TIGR00487 IF-2 translation ini 92.6 0.047 1E-06 47.6 0.9 20 141-160 86-105 (587)
387 PF04670 Gtr1_RagA: Gtr1/RagA 92.6 0.2 4.4E-06 38.7 4.2 49 19-69 71-126 (232)
388 COG4181 Predicted ABC-type tra 92.5 0.052 1.1E-06 40.4 0.8 17 143-159 37-53 (228)
389 TIGR03420 DnaA_homol_Hda DnaA 92.4 0.11 2.5E-06 39.0 2.6 35 123-160 22-56 (226)
390 PRK10416 signal recognition pa 92.3 0.14 2.9E-06 41.4 3.1 19 141-159 113-131 (318)
391 TIGR00679 hpr-ser Hpr(Ser) kin 92.2 0.7 1.5E-05 37.1 6.9 20 142-161 146-165 (304)
392 PF13555 AAA_29: P-loop contai 92.1 0.053 1.1E-06 33.2 0.4 16 144-159 25-40 (62)
393 PRK14721 flhF flagellar biosyn 92.0 0.12 2.5E-06 43.4 2.5 19 141-159 190-208 (420)
394 KOG0057|consensus 92.0 0.057 1.2E-06 46.4 0.6 20 141-160 377-396 (591)
395 KOG0781|consensus 91.9 0.17 3.6E-06 43.0 3.3 18 140-157 376-393 (587)
396 PRK05537 bifunctional sulfate 91.7 0.14 3E-06 44.6 2.7 35 125-160 376-410 (568)
397 CHL00189 infB translation init 91.6 0.072 1.6E-06 47.7 0.9 20 141-160 243-262 (742)
398 PRK08099 bifunctional DNA-bind 91.5 0.07 1.5E-06 44.4 0.6 19 142-160 219-237 (399)
399 TIGR01425 SRP54_euk signal rec 91.5 0.19 4.2E-06 42.2 3.2 19 141-159 99-117 (429)
400 PRK14489 putative bifunctional 91.3 0.16 3.4E-06 41.8 2.4 18 143-160 206-223 (366)
401 COG1132 MdlB ABC-type multidru 91.2 0.075 1.6E-06 45.9 0.5 20 141-160 354-373 (567)
402 KOG0086|consensus 91.1 1.5 3.2E-05 32.0 6.9 84 11-103 68-156 (214)
403 COG2274 SunT ABC-type bacterio 91.0 0.075 1.6E-06 47.4 0.4 19 142-160 499-517 (709)
404 TIGR02928 orc1/cdc6 family rep 90.9 0.14 3.1E-06 41.4 1.9 35 123-160 24-58 (365)
405 PRK05703 flhF flagellar biosyn 90.7 0.22 4.8E-06 41.8 2.9 17 143-159 222-238 (424)
406 PLN02796 D-glycerate 3-kinase 90.7 0.11 2.4E-06 42.4 1.0 21 140-160 98-118 (347)
407 PRK04220 2-phosphoglycerate ki 90.6 0.23 4.9E-06 39.9 2.7 20 141-160 91-110 (301)
408 PF05621 TniB: Bacterial TniB 90.5 0.22 4.8E-06 39.9 2.5 36 125-160 44-79 (302)
409 PRK00411 cdc6 cell division co 90.4 0.2 4.4E-06 41.0 2.4 18 143-160 56-73 (394)
410 cd03110 Fer4_NifH_child This p 90.3 0.53 1.1E-05 34.1 4.3 49 19-68 109-157 (179)
411 TIGR02868 CydC thiol reductant 90.3 0.1 2.2E-06 44.7 0.5 20 141-160 360-379 (529)
412 KOG2749|consensus 90.3 0.26 5.6E-06 40.4 2.8 38 121-159 83-120 (415)
413 PF05049 IIGP: Interferon-indu 90.3 1.2 2.7E-05 36.8 6.8 56 5-66 98-153 (376)
414 COG2074 2-phosphoglycerate kin 90.3 0.24 5.3E-06 38.8 2.5 22 140-161 87-108 (299)
415 PRK00771 signal recognition pa 90.3 0.3 6.4E-06 41.2 3.2 19 141-159 94-112 (437)
416 TIGR03015 pepcterm_ATPase puta 90.2 0.24 5.3E-06 38.2 2.5 18 143-160 44-61 (269)
417 PF00437 T2SE: Type II/IV secr 90.1 0.24 5.3E-06 38.5 2.5 31 124-159 114-144 (270)
418 KOG0090|consensus 89.8 1.5 3.2E-05 33.7 6.3 60 6-69 90-160 (238)
419 PF06309 Torsin: Torsin; Inte 89.8 0.56 1.2E-05 32.8 3.8 36 123-158 34-69 (127)
420 PRK06851 hypothetical protein; 89.7 0.16 3.5E-06 41.8 1.3 18 143-160 215-232 (367)
421 COG1149 MinD superfamily P-loo 89.7 0.71 1.5E-05 36.5 4.7 47 19-67 180-227 (284)
422 PLN02199 shikimate kinase 89.6 0.29 6.2E-06 39.2 2.5 17 143-159 103-119 (303)
423 KOG0097|consensus 89.5 1.6 3.4E-05 31.3 5.9 83 12-103 71-158 (215)
424 PRK10744 pstB phosphate transp 89.4 0.12 2.6E-06 40.1 0.3 19 142-160 39-57 (260)
425 PRK12727 flagellar biosynthesi 89.4 0.29 6.2E-06 42.3 2.6 37 123-159 328-367 (559)
426 PRK09183 transposase/IS protei 89.4 0.26 5.5E-06 38.6 2.1 18 143-160 103-120 (259)
427 KOG3905|consensus 89.4 0.88 1.9E-05 37.2 5.1 64 53-134 221-289 (473)
428 PRK05306 infB translation init 89.3 0.15 3.3E-06 46.0 0.8 21 140-160 288-308 (787)
429 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 89.1 0.15 3.2E-06 38.7 0.6 19 142-160 48-66 (224)
430 CHL00095 clpC Clp protease ATP 89.1 0.26 5.6E-06 44.7 2.2 38 120-160 181-218 (821)
431 PRK12724 flagellar biosynthesi 89.0 0.34 7.3E-06 40.7 2.6 18 142-159 223-240 (432)
432 PRK11629 lolD lipoprotein tran 88.9 0.16 3.5E-06 38.7 0.6 18 143-160 36-53 (233)
433 COG3854 SpoIIIAA ncharacterize 88.8 0.22 4.9E-06 38.7 1.4 19 142-160 137-155 (308)
434 PRK12723 flagellar biosynthesi 88.8 0.41 8.8E-06 39.8 3.0 18 142-159 174-191 (388)
435 PRK14274 phosphate ABC transpo 88.8 0.16 3.5E-06 39.3 0.6 18 143-160 39-56 (259)
436 PRK13543 cytochrome c biogenes 88.7 0.15 3.2E-06 38.4 0.3 18 143-160 38-55 (214)
437 PRK00080 ruvB Holliday junctio 88.7 0.28 6.2E-06 39.4 2.0 40 121-160 28-69 (328)
438 PRK14235 phosphate transporter 88.7 0.15 3.2E-06 39.8 0.3 19 142-160 45-63 (267)
439 PLN03046 D-glycerate 3-kinase; 88.7 0.36 7.8E-06 40.7 2.6 21 140-160 210-230 (460)
440 TIGR02881 spore_V_K stage V sp 88.6 0.2 4.2E-06 39.0 1.0 20 141-160 41-60 (261)
441 PRK14248 phosphate ABC transpo 88.6 0.17 3.7E-06 39.5 0.6 19 142-160 47-65 (268)
442 PRK11174 cysteine/glutathione 88.6 0.18 3.9E-06 43.7 0.8 20 141-160 375-394 (588)
443 PRK14722 flhF flagellar biosyn 88.6 0.19 4.2E-06 41.5 0.9 20 141-160 136-155 (374)
444 PRK13900 type IV secretion sys 88.5 0.34 7.3E-06 39.4 2.3 18 143-160 161-178 (332)
445 PRK14238 phosphate transporter 88.5 0.15 3.3E-06 39.8 0.3 19 142-160 50-68 (271)
446 PRK10575 iron-hydroxamate tran 88.5 0.17 3.8E-06 39.3 0.6 19 142-160 37-55 (265)
447 CHL00181 cbbX CbbX; Provisiona 88.5 0.32 6.9E-06 38.7 2.1 20 141-160 58-77 (287)
448 PRK14257 phosphate ABC transpo 88.5 0.17 3.8E-06 40.9 0.6 20 141-160 107-126 (329)
449 PRK10584 putative ABC transpor 88.4 0.16 3.5E-06 38.4 0.4 18 143-160 37-54 (228)
450 PTZ00243 ABC transporter; Prov 88.4 0.15 3.3E-06 49.2 0.3 20 141-160 1335-1354(1560)
451 TIGR02203 MsbA_lipidA lipid A 88.4 0.17 3.7E-06 43.6 0.5 20 141-160 357-376 (571)
452 PRK14243 phosphate transporter 88.4 0.16 3.5E-06 39.5 0.3 18 143-160 37-54 (264)
453 PRK13645 cbiO cobalt transport 88.3 0.16 3.5E-06 40.1 0.3 18 143-160 38-55 (289)
454 TIGR03797 NHPM_micro_ABC2 NHPM 88.3 0.17 3.8E-06 44.7 0.6 20 141-160 478-497 (686)
455 TIGR01242 26Sp45 26S proteasom 88.3 0.45 9.7E-06 38.9 2.9 40 121-160 125-174 (364)
456 PRK06526 transposase; Provisio 88.2 0.32 6.8E-06 38.0 1.9 18 143-160 99-116 (254)
457 TIGR01193 bacteriocin_ABC ABC- 88.2 0.2 4.4E-06 44.5 0.9 20 141-160 499-518 (708)
458 PRK14252 phosphate ABC transpo 88.2 0.17 3.6E-06 39.4 0.3 19 142-160 42-60 (265)
459 KOG0066|consensus 88.0 0.19 4.1E-06 42.6 0.6 18 143-160 614-631 (807)
460 TIGR02857 CydD thiol reductant 88.0 0.19 4.1E-06 43.0 0.6 20 141-160 347-366 (529)
461 PRK12402 replication factor C 88.0 0.4 8.7E-06 38.2 2.4 36 122-160 19-54 (337)
462 PRK13531 regulatory ATPase Rav 88.0 0.32 6.9E-06 41.6 1.9 35 121-160 23-57 (498)
463 PHA02624 large T antigen; Prov 87.9 0.52 1.1E-05 41.4 3.1 18 143-160 432-449 (647)
464 PRK14259 phosphate ABC transpo 87.9 0.2 4.4E-06 39.1 0.6 19 142-160 39-57 (269)
465 COG1341 Predicted GTPase or GT 87.9 0.18 3.9E-06 41.8 0.3 20 141-160 72-91 (398)
466 PLN02165 adenylate isopentenyl 87.8 0.17 3.6E-06 41.2 0.1 18 143-160 44-61 (334)
467 KOG4658|consensus 87.8 0.38 8.1E-06 44.1 2.3 37 121-160 161-197 (889)
468 TIGR03796 NHPM_micro_ABC1 NHPM 87.8 0.2 4.2E-06 44.5 0.5 20 141-160 504-523 (710)
469 PRK11247 ssuB aliphatic sulfon 87.8 0.18 4E-06 39.2 0.3 18 143-160 39-56 (257)
470 TIGR02769 nickel_nikE nickel i 87.8 0.21 4.5E-06 38.9 0.6 18 143-160 38-55 (265)
471 PRK14271 phosphate ABC transpo 87.8 0.18 4E-06 39.6 0.3 19 142-160 47-65 (276)
472 PF00519 PPV_E1_C: Papillomavi 87.7 0.56 1.2E-05 39.0 3.1 37 121-159 243-279 (432)
473 COG0488 Uup ATPase components 87.6 0.19 4.1E-06 43.4 0.3 20 141-160 347-366 (530)
474 PRK13546 teichoic acids export 87.6 0.21 4.6E-06 39.0 0.6 19 142-160 50-68 (264)
475 PLN03232 ABC transporter C fam 87.6 0.2 4.4E-06 48.3 0.5 20 141-160 1261-1280(1495)
476 PRK14268 phosphate ABC transpo 87.6 0.19 4.1E-06 38.9 0.3 18 143-160 39-56 (258)
477 COG1493 HprK Serine kinase of 87.6 2.6 5.6E-05 33.8 6.6 41 121-161 113-164 (308)
478 PRK13631 cbiO cobalt transport 87.6 0.19 4.1E-06 40.5 0.3 19 142-160 52-70 (320)
479 TIGR01271 CFTR_protein cystic 87.6 0.19 4.1E-06 48.5 0.3 20 141-160 1244-1263(1490)
480 PRK10787 DNA-binding ATP-depen 87.5 0.55 1.2E-05 42.5 3.2 40 121-160 325-367 (784)
481 PRK06995 flhF flagellar biosyn 87.5 0.51 1.1E-05 40.3 2.9 18 142-159 256-273 (484)
482 PRK10867 signal recognition pa 87.5 0.6 1.3E-05 39.4 3.2 19 141-159 99-117 (433)
483 PRK13632 cbiO cobalt transport 87.4 0.22 4.8E-06 38.9 0.6 18 143-160 36-53 (271)
484 PRK13648 cbiO cobalt transport 87.4 0.2 4.3E-06 39.1 0.3 18 143-160 36-53 (269)
485 PRK14265 phosphate ABC transpo 87.3 0.2 4.4E-06 39.3 0.3 19 142-160 46-64 (274)
486 PLN03130 ABC transporter C fam 87.3 0.2 4.3E-06 48.7 0.3 20 141-160 1264-1283(1622)
487 cd03288 ABCC_SUR2 The SUR doma 87.3 0.23 5E-06 38.5 0.6 19 142-160 47-65 (257)
488 cd03291 ABCC_CFTR1 The CFTR su 87.2 0.23 5.1E-06 39.3 0.6 19 142-160 63-81 (282)
489 PHA02774 E1; Provisional 87.1 0.61 1.3E-05 40.7 3.1 33 125-159 419-451 (613)
490 PTZ00454 26S protease regulato 87.1 0.65 1.4E-05 38.7 3.2 40 121-160 148-197 (398)
491 PRK15112 antimicrobial peptide 87.0 0.24 5.3E-06 38.6 0.6 18 143-160 40-57 (267)
492 COG4167 SapF ABC-type antimicr 87.0 0.25 5.3E-06 37.3 0.6 19 142-160 39-57 (267)
493 PF02492 cobW: CobW/HypB/UreG, 87.0 0.59 1.3E-05 34.2 2.6 43 23-69 112-156 (178)
494 PF01695 IstB_IS21: IstB-like 86.9 0.45 9.7E-06 35.1 2.0 18 142-159 47-64 (178)
495 PRK14246 phosphate ABC transpo 86.9 0.25 5.3E-06 38.4 0.6 18 143-160 37-54 (257)
496 TIGR03375 type_I_sec_LssB type 86.8 0.24 5.2E-06 43.9 0.5 20 141-160 490-509 (694)
497 CHL00195 ycf46 Ycf46; Provisio 86.8 0.66 1.4E-05 39.7 3.1 40 121-160 231-277 (489)
498 PRK13657 cyclic beta-1,2-gluca 86.7 0.27 5.9E-06 42.6 0.8 20 141-160 360-379 (588)
499 cd03267 ABC_NatA_like Similar 86.7 0.23 5E-06 38.0 0.3 19 142-160 47-65 (236)
500 TIGR02639 ClpA ATP-dependent C 86.7 0.45 9.7E-06 42.6 2.2 38 120-160 184-221 (731)
No 1
>KOG2484|consensus
Probab=99.95 E-value=5.2e-28 Score=193.55 Aligned_cols=137 Identities=39% Similarity=0.621 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 10 RGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 10 ~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
..++.+++ ++.++.+||||+|+|||+|+++.+.++++.+... +++.+|+|+||+||+|. +.++.|..|++
T Consensus 133 ~kaY~ke~-rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr--------Ev~e~Wl~YLr 203 (435)
T KOG2484|consen 133 KKAYDKEF-RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR--------EVVEKWLVYLR 203 (435)
T ss_pred HHHHHHHH-HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH--------HHHHHHHHHHH
Confidence 44788888 8999999999999999999999999999988542 45999999999999998 88899999998
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+|.++|-|.++.++.+ ....+.+.+.|.+.|++.|.+|......++.|+|||||+|||||||+|.
T Consensus 204 --~~~ptv~fkast~~~~~~---~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvIN 270 (435)
T KOG2484|consen 204 --REGPTVAFKASTQMQNSN---SKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVIN 270 (435)
T ss_pred --hhCCcceeeccccccccc---ccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHH
Confidence 678889998888755543 3344555678999999999999988777788999999999999999985
No 2
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.93 E-value=5.7e-26 Score=164.57 Aligned_cols=117 Identities=32% Similarity=0.466 Sum_probs=92.4
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPR 97 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 97 (161)
++++++||++++|+|+++|..+.+..+.+++... .++|+|+|+||+|+.++ +....|...+.+......++
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--------~~~~~~~~~~~~~~~~~~~~ 74 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--------WVTARWVKILSKEYPTIAFH 74 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--------HHHHHHHHHHhcCCcEEEEE
Confidence 5899999999999999999888888888887642 25899999999999876 44566777765221222477
Q ss_pred EeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 98 FSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 98 iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+||+++ .|.++|++.|.+++........++|+++|.||||||||++
T Consensus 75 iSa~~~-----------------~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN 120 (157)
T cd01858 75 ASINNP-----------------FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIIN 120 (157)
T ss_pred eecccc-----------------ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHH
Confidence 899888 8999999999988643211235899999999999999985
No 3
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.93 E-value=1.8e-25 Score=175.77 Aligned_cols=124 Identities=23% Similarity=0.334 Sum_probs=102.8
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.||.. .++++ ++++++||+||+|+|++.|.++.++.+.+.+. ++|+|+|+||+|++++ .....|.+
T Consensus 5 pgHm~k-~~~~~-~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~---~kp~IiVlNK~DL~~~--------~~~~~~~~ 71 (276)
T TIGR03596 5 PGHMAK-ARREI-KEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG---NKPRLIVLNKADLADP--------AVTKQWLK 71 (276)
T ss_pred hHHHHH-HHHHH-HHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC---CCCEEEEEEccccCCH--------HHHHHHHH
Confidence 889985 59999 79999999999999999999988888888763 5899999999999865 43566777
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCC--------CCceEEEEEeecCCCccc
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDI--------KTSITVGVVGECNIAGSI 157 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~--------~~~~~v~vvG~pNVGKSs 157 (161)
++.. .+.+++++||.++ .|+++|.+.|.++++.... .+.+++++||+|||||||
T Consensus 72 ~~~~-~~~~vi~iSa~~~-----------------~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSs 133 (276)
T TIGR03596 72 YFEE-KGIKALAINAKKG-----------------KGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKST 133 (276)
T ss_pred HHHH-cCCeEEEEECCCc-----------------ccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHH
Confidence 6642 3457899999998 8999999999888764321 245899999999999999
Q ss_pred ccC
Q psy8220 158 RDL 160 (161)
Q Consensus 158 l~~ 160 (161)
|++
T Consensus 134 lin 136 (276)
T TIGR03596 134 LIN 136 (276)
T ss_pred HHH
Confidence 975
No 4
>KOG2423|consensus
Probab=99.93 E-value=2.6e-25 Score=178.25 Aligned_cols=123 Identities=32% Similarity=0.504 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
-.|.++ .+.++.+|+|+.|+||++|.++.+..++++++++ +.+-+|+|+||+||+|. .....|...++
T Consensus 202 RIW~EL-yKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPt--------wvt~~Wv~~lS-- 270 (572)
T KOG2423|consen 202 RIWGEL-YKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPT--------WVTAKWVRHLS-- 270 (572)
T ss_pred HHHHHH-HHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccH--------HHHHHHHHHHh--
Confidence 368888 8999999999999999999999999999999875 57889999999999998 77789999998
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+|.+.|.|.-. +.+|-..|++.|++++..+.++..|-||+||||||||||+|+
T Consensus 271 keyPTiAfHAsi~---------------nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiIN 325 (572)
T KOG2423|consen 271 KEYPTIAFHASIN---------------NSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIIN 325 (572)
T ss_pred hhCcceeeehhhc---------------CccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHH
Confidence 6789999987654 459999999999999998877788999999999999999985
No 5
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.92 E-value=7.1e-25 Score=173.29 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=102.7
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.||.. .++++ ++++++||+||+|+|++.|.++.++.+.+.+. ++|+++|+||+|+.+. .....|.+
T Consensus 8 pgHm~k-~~~~l-~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~---~kp~iiVlNK~DL~~~--------~~~~~~~~ 74 (287)
T PRK09563 8 PGHMAK-ARREI-KENLKLVDVVIEVLDARIPLSSENPMIDKIIG---NKPRLLILNKSDLADP--------EVTKKWIE 74 (287)
T ss_pred HHHHHH-HHHHH-HHHhhhCCEEEEEEECCCCCCCCChhHHHHhC---CCCEEEEEEchhcCCH--------HHHHHHHH
Confidence 789985 49999 79999999999999999999988888877663 5999999999999865 44567877
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC--------CCCceEEEEEeecCCCccc
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD--------IKTSITVGVVGECNIAGSI 157 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~--------~~~~~~v~vvG~pNVGKSs 157 (161)
++.+ .+.+++++||.++ .|++.|++.|.+.++... ....+++++||+|||||||
T Consensus 75 ~~~~-~~~~vi~vSa~~~-----------------~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSs 136 (287)
T PRK09563 75 YFEE-QGIKALAINAKKG-----------------QGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKST 136 (287)
T ss_pred HHHH-cCCeEEEEECCCc-----------------ccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHH
Confidence 7642 2467899999998 899999999988875431 1346899999999999999
Q ss_pred ccC
Q psy8220 158 RDL 160 (161)
Q Consensus 158 l~~ 160 (161)
|++
T Consensus 137 liN 139 (287)
T PRK09563 137 LIN 139 (287)
T ss_pred HHH
Confidence 975
No 6
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.91 E-value=6.9e-24 Score=156.18 Aligned_cols=124 Identities=43% Similarity=0.651 Sum_probs=95.7
Q ss_pred cEEEEEEeCCCCCCCCcHHHHHH--HhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCC
Q psy8220 26 DVILEVVDARDPMGTRCKVAEDL--VVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 26 DviL~VvD~~~~~~~~~~~i~~~--l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~ 103 (161)
|+|++|+|++.|+++.++.+.+. +.. .++|+|+|+||+|++++ +.+..|.+++. ...+.+.|.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~-~~kp~IlVlNK~DL~~~--------~~l~~~~~~~~--~~~~~~~~~~~~~ 69 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG-GNKKLVLVLNKIDLVPK--------ENVEKWLKYLR--REFPTVAFKASTQ 69 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc-CCCCEEEEEehhhcCCH--------HHHHHHHHHHH--hhCCEEEEEeccc
Confidence 89999999999999999999887 433 57999999999999987 66788999886 3455555555443
Q ss_pred CCcch---------hhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 104 KDAQT---------ERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 104 ~~~~~---------~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..... .....+.++..+.|.+.|++.++++.........++++++|+||||||||++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin 135 (172)
T cd04178 70 SQKKNLGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLIN 135 (172)
T ss_pred ccccchhhcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHH
Confidence 22111 1234566778889999999999887765444556899999999999999985
No 7
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=4.2e-24 Score=171.21 Aligned_cols=126 Identities=29% Similarity=0.408 Sum_probs=100.8
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|.||. ++++++ .+.++.+|+|+.|+|+++|.++..+.+.+++. +++.++|+||+||++. .....|.
T Consensus 17 ~~g~~~-k~~~~~-~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~---~k~~i~vlNK~DL~~~--------~~~~~W~ 83 (322)
T COG1161 17 FPGHMK-KAKRQL-KEVLKSVDVVVEVVDARDPLGTRNPELERIVK---EKPKLLVLNKADLAPK--------EVTKKWK 83 (322)
T ss_pred CCCchH-HHHHHH-HHhcccCCEEEEEEeccccccccCccHHHHHc---cCCcEEEEehhhcCCH--------HHHHHHH
Confidence 488888 579999 89999999999999999999999999999885 4777999999999998 6688999
Q ss_pred hhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHH--------HHHHhHhhcCCCCCceEEEEEeecCCCcc
Q psy8220 85 PYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLM--------LLLGNYTRNKDIKTSITVGVVGECNIAGS 156 (161)
Q Consensus 85 ~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~--------~~l~~~~~~~~~~~~~~v~vvG~pNVGKS 156 (161)
+++....+...+++++.++ .+...+. +.+..+.+....+..++|+|||+||||||
T Consensus 84 ~~~~~~~~~~~~~v~~~~~-----------------~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKS 146 (322)
T COG1161 84 KYFKKEEGIKPIFVSAKSR-----------------QGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKS 146 (322)
T ss_pred HHHHhcCCCccEEEEeecc-----------------cCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHH
Confidence 9987444556788888877 5555555 33333333322345689999999999999
Q ss_pred cccC
Q psy8220 157 IRDL 160 (161)
Q Consensus 157 sl~~ 160 (161)
|||+
T Consensus 147 slIN 150 (322)
T COG1161 147 TLIN 150 (322)
T ss_pred HHHH
Confidence 9986
No 8
>KOG1424|consensus
Probab=99.90 E-value=6.3e-24 Score=174.60 Aligned_cols=90 Identities=27% Similarity=0.379 Sum_probs=79.9
Q ss_pred cCCCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHH
Q psy8220 3 SVKPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQ 81 (161)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~ 81 (161)
+++|++++-++|+|+| ++++.+|+|+.+||||+|..-.++.+.+++.+. ..|..++++||+||+++ +...
T Consensus 154 ~lTpFErNLE~WRQLW-RVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~--------~qr~ 224 (562)
T KOG1424|consen 154 VLTPFERNLEIWRQLW-RVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPP--------EQRV 224 (562)
T ss_pred eechhhhCHHHHHHHH-HHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCH--------HHHH
Confidence 4689999999999995 999999999999999999998999999998764 35888999999999998 6778
Q ss_pred HHhhhhccCCCCceeEEeecC
Q psy8220 82 TWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 82 ~~~~~~~~~~~~~~i~iSa~~ 102 (161)
+|..||.. .+.+++++||.-
T Consensus 225 aWa~YF~~-~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 225 AWAEYFRQ-NNIPVVFFSALA 244 (562)
T ss_pred HHHHHHHh-cCceEEEEeccc
Confidence 99999963 467899999986
No 9
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.90 E-value=3.6e-23 Score=151.98 Aligned_cols=124 Identities=24% Similarity=0.320 Sum_probs=97.2
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.||.. .++++ ++++++||++|+|+|++.|....+..+.+.+ .++|+++|+||+|+.++ +....|.+
T Consensus 3 ~~~~~~-~~~~~-~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~---~~k~~ilVlNK~Dl~~~--------~~~~~~~~ 69 (171)
T cd01856 3 PGHMAK-ALRQI-KEKLKLVDLVIEVRDARIPLSSRNPLLEKIL---GNKPRIIVLNKADLADP--------KKTKKWLK 69 (171)
T ss_pred chHHHH-HHHHH-HHHHhhCCEEEEEeeccCccCcCChhhHhHh---cCCCEEEEEehhhcCCh--------HHHHHHHH
Confidence 778884 69999 8999999999999999998877776666654 35899999999999765 33445655
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc----C---CCCCceEEEEEeecCCCcccc
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN----K---DIKTSITVGVVGECNIAGSIR 158 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~----~---~~~~~~~v~vvG~pNVGKSsl 158 (161)
++.. ...+++++||+++ .|+++|.+.|.++++. . ......+++++|.||||||||
T Consensus 70 ~~~~-~~~~vi~iSa~~~-----------------~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstl 131 (171)
T cd01856 70 YFES-KGEKVLFVNAKSG-----------------KGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTL 131 (171)
T ss_pred HHHh-cCCeEEEEECCCc-----------------ccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHH
Confidence 5542 2346789999998 8999999999987641 0 112347999999999999998
Q ss_pred cC
Q psy8220 159 DL 160 (161)
Q Consensus 159 ~~ 160 (161)
+.
T Consensus 132 in 133 (171)
T cd01856 132 IN 133 (171)
T ss_pred HH
Confidence 74
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=3.1e-23 Score=169.27 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 10 RGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 10 ~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+++.+++.+..++++||++|||+|++.+++..|+.+.++++. .++|+|+|+||+|-... + ....++++
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~kpviLvvNK~D~~~~--------e--~~~~efys- 136 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR-SKKPVILVVNKIDNLKA--------E--ELAYEFYS- 136 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCCCEEEEEEcccCchh--------h--hhHHHHHh-
Confidence 455577777999999999999999999999999999999986 78999999999997643 2 11122322
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh-cC-CC----CCceEEEEEeecCCCcccccC
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR-NK-DI----KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~-~~-~~----~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.....++++||.++ .|+++|++.+.+.++ .. .. ..+++++|||.||||||||++
T Consensus 137 lG~g~~~~ISA~Hg-----------------~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN 196 (444)
T COG1160 137 LGFGEPVPISAEHG-----------------RGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLIN 196 (444)
T ss_pred cCCCCceEeehhhc-----------------cCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHH
Confidence 11235799999999 999999999999974 11 11 146999999999999999985
No 11
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.89 E-value=1.7e-22 Score=145.95 Aligned_cols=118 Identities=30% Similarity=0.423 Sum_probs=92.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
|+++++..+++||++|+|+|+++|....+..+.+++.. .++|+++|+||+|+.+. .....|..... ..+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~~~p~iiv~NK~Dl~~~--------~~~~~~~~~~~-~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE-LGKKLLIVLNKADLVPK--------EVLEKWKSIKE-SEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh-CCCcEEEEEEhHHhCCH--------HHHHHHHHHHH-hCCC
Confidence 77887777778999999999999887777777766654 57999999999999764 22333432222 1346
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+++++||+++ .|+++|.+.|.++++... ...+++++|.||||||||+.
T Consensus 72 ~~~~iSa~~~-----------------~gi~~L~~~l~~~~~~~~--~~~~~~~ig~~~~Gkssl~~ 119 (156)
T cd01859 72 PVVYVSAKER-----------------LGTKILRRTIKELAKIDG--KEGKVGVVGYPNVGKSSIIN 119 (156)
T ss_pred cEEEEEcccc-----------------ccHHHHHHHHHHHHhhcC--CCcEEEEECCCCCCHHHHHH
Confidence 7899999998 999999999999887532 34789999999999999974
No 12
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.87 E-value=8.8e-22 Score=142.38 Aligned_cols=109 Identities=37% Similarity=0.479 Sum_probs=82.9
Q ss_pred cEEEEEEeCCCCCCCCcHHHH-HHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCC
Q psy8220 26 DVILEVVDARDPMGTRCKVAE-DLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQK 104 (161)
Q Consensus 26 DviL~VvD~~~~~~~~~~~i~-~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~ 104 (161)
|++|+|+|+++|.+..+..+. ..+.. .++|+|+|+||+|+.++ +....|...+....+.+++++||.++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-~~~p~IiVlNK~Dl~~~--------~~~~~~~~~~~~~~~~~ii~vSa~~~- 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-KGKKLILVLNKADLVPK--------EVLRKWLAYLRHSYPTIPFKISATNG- 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-CCCCEEEEEechhcCCH--------HHHHHHHHHHHhhCCceEEEEeccCC-
Confidence 899999999999888877776 44544 57999999999999876 44556765444222456789999998
Q ss_pred CcchhhhhhhhccccccCHHHHHHHHHhHhhc--------CCCCCceEEEEEeecCCCcccccC
Q psy8220 105 DAQTERDLKAINVSSCVGAELLMLLLGNYTRN--------KDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~--------~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|+++|.+.|.+.... .......+++++|.||||||||++
T Consensus 71 ----------------~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin 118 (155)
T cd01849 71 ----------------QGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVIN 118 (155)
T ss_pred ----------------cChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHH
Confidence 8999999988654311 112345899999999999999974
No 13
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.86 E-value=1.5e-21 Score=139.09 Aligned_cols=99 Identities=28% Similarity=0.357 Sum_probs=81.1
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
|+++ ++++++||++|+|+|+++|....+..+.+++... .++|+++|+||+|+.++ +....|..++.. .+
T Consensus 2 ~~~~-~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~--------~~~~~~~~~~~~-~~ 71 (141)
T cd01857 2 WRQL-WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE--------EQRKAWAEYFKK-EG 71 (141)
T ss_pred HHHH-HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH--------HHHHHHHHHHHh-cC
Confidence 6778 7999999999999999999988888888888652 27999999999999876 445566666642 24
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+++++||.++ .+ +++++|.||||||||+.
T Consensus 72 ~~ii~iSa~~~-----------------~~---------------------~~~~~G~~~vGKstlin 101 (141)
T cd01857 72 IVVVFFSALKE-----------------NA---------------------TIGLVGYPNVGKSSLIN 101 (141)
T ss_pred CeEEEEEecCC-----------------Cc---------------------EEEEECCCCCCHHHHHH
Confidence 67889999877 32 69999999999999975
No 14
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.83 E-value=1.5e-20 Score=139.98 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=84.5
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh--hhccC--
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP--YNSIQ-- 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~-- 90 (161)
+.++...+++||++|+|+|++++..+.+..+... . .++|+++|+||+|+.+.. ........|.. .....
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~--~-~~~~~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF--G-GNNPVILVGNKIDLLPKD----KNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccchhHHHh--c-CCCcEEEEEEchhcCCCC----CCHHHHHHHHHHHHHhhcCC
Confidence 4455788899999999999998876666555222 2 468999999999997541 00122233431 11100
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
...+++++||+++ .|+++|.+.|.++++.. .+++++|.|||||||||+
T Consensus 98 ~~~~i~~vSA~~~-----------------~gi~eL~~~l~~~l~~~-----~~~~~~G~~nvGKStliN 145 (190)
T cd01855 98 KPKDVILISAKKG-----------------WGVEELINAIKKLAKKG-----GDVYVVGATNVGKSTLIN 145 (190)
T ss_pred CcccEEEEECCCC-----------------CCHHHHHHHHHHHhhcC-----CcEEEEcCCCCCHHHHHH
Confidence 1125789999998 99999999999988633 589999999999999985
No 15
>PRK13796 GTPase YqeH; Provisional
Probab=99.80 E-value=3.9e-19 Score=144.83 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred CCcchHHHHHHHHHHHhhhcc-EEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 6 PMEMRGVVVQEIERSVVEAAD-VILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aD-viL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
|.....+.+.++ .+.+.++| +|++|+|+.+...+..+.+.++. .++|+++|+||+||.+... . .+.+..|.
T Consensus 51 ~~~~~~~~~~~~-l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~---~~kpviLViNK~DLl~~~~---~-~~~i~~~l 122 (365)
T PRK13796 51 DVSLTDDDFLKL-LNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV---GNNPVLLVGNKADLLPKSV---K-KNKVKNWL 122 (365)
T ss_pred CCCCCHHHHHHH-HHhhcccCcEEEEEEECccCCCchhHHHHHHh---CCCCEEEEEEchhhCCCcc---C-HHHHHHHH
Confidence 333444445555 57777777 99999999998877777776654 3689999999999986410 0 12345565
Q ss_pred hhhccCCCC---ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 85 PYNSIQSIY---SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 85 ~~~~~~~~~---~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+....+. .++.+||+++ .|+++|.+.|.++.+. .+++|||+|||||||||+
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~g-----------------~gI~eL~~~I~~~~~~------~~v~vvG~~NvGKSTLiN 178 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQKG-----------------HGIDELLEAIEKYREG------RDVYVVGVTNVGKSTLIN 178 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCCC-----------------CCHHHHHHHHHHhcCC------CeEEEEcCCCCcHHHHHH
Confidence 543221232 4788999998 9999999999877532 479999999999999985
No 16
>KOG2485|consensus
Probab=99.79 E-value=1.8e-19 Score=141.01 Aligned_cols=127 Identities=24% Similarity=0.281 Sum_probs=84.8
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.||.. .++++ ++.+...|+||+|.|||.|+++.++.+.+++. .+|.|+|+||+||++. ......++
T Consensus 30 pgHmak-alr~i-~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~---~k~riiVlNK~DLad~--------~~~k~~iq 96 (335)
T KOG2485|consen 30 PGHMAK-ALRAI-QNRLPLVDCIIEVRDARIPLSSRNELFQDFLP---PKPRIIVLNKMDLADP--------KEQKKIIQ 96 (335)
T ss_pred chHHHH-HHHHH-HhhcccccEEEEeeccccCCccccHHHHHhcC---CCceEEEEecccccCc--------hhhhHHHH
Confidence 778885 49999 89999999999999999999999999888774 5999999999999985 22233444
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh---c--CCCCCceEEEEEeecCCCcccccC
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR---N--KDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~---~--~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
++..+.....+..++.... ..++..++..+..+.. . ...+....|+|||+|||||||||.
T Consensus 97 ~~~~~~~~~~~~~~c~~~~---------------~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLIN 161 (335)
T KOG2485|consen 97 YLEWQNLESYIKLDCNKDC---------------NKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLIN 161 (335)
T ss_pred HHHhhcccchhhhhhhhhh---------------hhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHH
Confidence 4432112222333332220 0123333333222221 1 112345899999999999999985
No 17
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.79 E-value=8.1e-19 Score=142.72 Aligned_cols=126 Identities=18% Similarity=0.161 Sum_probs=92.2
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|.....+.+..+.......+|+|++|+|+.++..+..+.+.+++ .++|+++|+||+|+.++.. . .+.+..|.
T Consensus 44 ~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~---~~~piilV~NK~DLl~k~~---~-~~~~~~~l 116 (360)
T TIGR03597 44 QDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV---GGNPVLLVGNKIDLLPKSV---N-LSKIKEWM 116 (360)
T ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh---CCCCEEEEEEchhhCCCCC---C-HHHHHHHH
Confidence 444455555666645555799999999999998888888887765 3589999999999986521 1 12345554
Q ss_pred hhhccCCCC---ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 85 PYNSIQSIY---SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 85 ~~~~~~~~~---~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+....+. .++.+||+++ .|+++|.+.|.++.. +.++++||.|||||||||+
T Consensus 117 ~~~~k~~g~~~~~i~~vSAk~g-----------------~gv~eL~~~l~~~~~------~~~v~~vG~~nvGKStliN 172 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSAKKG-----------------NGIDELLDKIKKARN------KKDVYVVGVTNVGKSSLIN 172 (360)
T ss_pred HHHHHHcCCCcCcEEEecCCCC-----------------CCHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHH
Confidence 322111233 3788999998 999999999987743 2589999999999999985
No 18
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=4.3e-18 Score=142.89 Aligned_cols=119 Identities=18% Similarity=0.124 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.+.+.+..++.+||++|+|+|++++.+..+..+.+.+.. .++|+++|+||+|+.... . +..+.|. +. .+
T Consensus 106 ~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-~~~piilV~NK~Dl~~~~--~----~~~~~~~--~g--~~ 174 (472)
T PRK03003 106 SVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR-SGKPVILAANKVDDERGE--A----DAAALWS--LG--LG 174 (472)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEEEEEECccCCccc--h----hhHHHHh--cC--CC
Confidence 344444778999999999999998877667777777776 689999999999986431 0 1111111 11 12
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC-----CCCceEEEEEeecCCCcccccC
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD-----IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~-----~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+++||+++ .|+++|++.|.+.++... ....++|++||.||||||||+.
T Consensus 175 -~~~~iSA~~g-----------------~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin 229 (472)
T PRK03003 175 -EPHPVSALHG-----------------RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLN 229 (472)
T ss_pred -CeEEEEcCCC-----------------CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHH
Confidence 3478999999 899999999988775421 1245899999999999999974
No 19
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=7.9e-18 Score=139.38 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=91.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
+...+..++++||++++|+|++.+....+..+.+++++ .++|+++|+||+|+.+.. .... +... .+.
T Consensus 68 ~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-~~~piilVvNK~D~~~~~-------~~~~---~~~~--lg~ 134 (429)
T TIGR03594 68 IREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK-SGKPVILVANKIDGKKED-------AVAA---EFYS--LGF 134 (429)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-hCCCEEEEEECccCCccc-------ccHH---HHHh--cCC
Confidence 44444789999999999999999888888888888876 689999999999987651 1111 1111 233
Q ss_pred -ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC-----CCCceEEEEEeecCCCcccccC
Q psy8220 94 -SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD-----IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 94 -~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~-----~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+++++||.++ .|+++|++.+.+.++... ....++|+++|.||||||||+.
T Consensus 135 ~~~~~vSa~~g-----------------~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin 190 (429)
T TIGR03594 135 GEPIPISAEHG-----------------RGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVN 190 (429)
T ss_pred CCeEEEeCCcC-----------------CChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHH
Confidence 6899999999 899999999988875432 1235899999999999999974
No 20
>PRK12289 GTPase RsgA; Reviewed
Probab=99.74 E-value=7.9e-18 Score=136.27 Aligned_cols=105 Identities=26% Similarity=0.207 Sum_probs=78.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
+.++.++|.+++|+|+.+|... ...+.+++.. ..+.|+++|+||+||++. +....|...+.. .+++++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~--------~~~~~~~~~~~~-~g~~v~ 153 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSP--------TEQQQWQDRLQQ-WGYQPL 153 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCCh--------HHHHHHHHHHHh-cCCeEE
Confidence 4568899999999999876422 2234444431 147999999999999875 434667665542 467889
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
++||.++ .|+++|.+.|.. ..++|+|.|||||||||+
T Consensus 154 ~iSA~tg-----------------~GI~eL~~~L~~----------ki~v~iG~SgVGKSSLIN 190 (352)
T PRK12289 154 FISVETG-----------------IGLEALLEQLRN----------KITVVAGPSGVGKSSLIN 190 (352)
T ss_pred EEEcCCC-----------------CCHHHHhhhhcc----------ceEEEEeCCCCCHHHHHH
Confidence 9999998 899998887732 137999999999999985
No 21
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=2.1e-17 Score=144.72 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
+.+.+..++++||++|+|+|++.++...+..+.+++.. .++|+++|+||+|+.... . .....|. +. ..
T Consensus 344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-~~~pvIlV~NK~D~~~~~----~--~~~~~~~--lg---~~ 411 (712)
T PRK09518 344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR-AGKPVVLAVNKIDDQASE----Y--DAAEFWK--LG---LG 411 (712)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cCCCEEEEEECcccccch----h--hHHHHHH--cC---CC
Confidence 33443788999999999999998887777778888876 689999999999986541 0 1111111 11 12
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCC-------CCceEEEEEeecCCCcccccC
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDI-------KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~-------~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+++||+++ .|+++|++.|.+.++.... ....+|+++|.||||||||+.
T Consensus 412 ~~~~iSA~~g-----------------~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin 468 (712)
T PRK09518 412 EPYPISAMHG-----------------RGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLN 468 (712)
T ss_pred CeEEEECCCC-----------------CCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHH
Confidence 3578999999 9999999999887754211 234899999999999999974
No 22
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=3.9e-17 Score=135.61 Aligned_cols=118 Identities=20% Similarity=0.215 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.+++.+..++.+||++|+|+|++.+....+..+.+++.. .++|+++|+||+|+.... ..... ... .+
T Consensus 69 ~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-~~~piilv~NK~D~~~~~-------~~~~~---~~~--lg 135 (435)
T PRK00093 69 QIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-SNKPVILVVNKVDGPDEE-------ADAYE---FYS--LG 135 (435)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCcEEEEEECccCccch-------hhHHH---HHh--cC
Confidence 355555778999999999999998877777777787876 689999999999975431 11111 111 23
Q ss_pred C-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC----CCCceEEEEEeecCCCcccccC
Q psy8220 93 Y-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD----IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 93 ~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~----~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
. .++++||.++ .|+++|.+.|.+..+... ....++|+++|.||||||||+.
T Consensus 136 ~~~~~~iSa~~g-----------------~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin 191 (435)
T PRK00093 136 LGEPYPISAEHG-----------------RGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLIN 191 (435)
T ss_pred CCCCEEEEeeCC-----------------CCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHH
Confidence 3 3689999999 899999999877443221 1346999999999999999974
No 23
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.67 E-value=2.2e-16 Score=122.30 Aligned_cols=110 Identities=20% Similarity=0.130 Sum_probs=78.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHH---hCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLV---VGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l---~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+.+.+..+..+|.+++|.|+++|..+.+ .+.+++ .. .+.|+++|+||+||.+.. +....|.+.+..
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~-~~i~~vIV~NK~DL~~~~-------~~~~~~~~~~~~- 95 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEA-QNIEPIIVLNKIDLLDDE-------DMEKEQLDIYRN- 95 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHH-CCCCEEEEEECcccCCCH-------HHHHHHHHHHHH-
Confidence 33443446789999999999998764432 233333 22 579999999999997651 212244444432
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+++++.+||+++ .|+++|.+.|.+ ..++++|.|||||||||+
T Consensus 96 ~g~~v~~~SAktg-----------------~gi~eLf~~l~~----------~~~~~~G~sgvGKStLiN 138 (245)
T TIGR00157 96 IGYQVLMTSSKNQ-----------------DGLKELIEALQN----------RISVFAGQSGVGKSSLIN 138 (245)
T ss_pred CCCeEEEEecCCc-----------------hhHHHHHhhhcC----------CEEEEECCCCCCHHHHHH
Confidence 4678899999998 899998877632 268899999999999985
No 24
>PRK00098 GTPase RsgA; Reviewed
Probab=99.65 E-value=3.7e-16 Score=124.23 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=74.5
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHH---HhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeE
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDL---VVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPR 97 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~---l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 97 (161)
.+.++|++++|+|+++|.... ..+.++ +.. .+.|+++|+||+||.+.. +....|...+.. .++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~-~~idr~L~~~~~-~~ip~iIVlNK~DL~~~~-------~~~~~~~~~~~~-~g~~v~~ 146 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFST-DLLDRFLVLAEA-NGIKPIIVLNKIDLLDDL-------EEARELLALYRA-IGYDVLE 146 (298)
T ss_pred eeecCCEEEEEEECCCCCCCH-HHHHHHHHHHHH-CCCCEEEEEEhHHcCCCH-------HHHHHHHHHHHH-CCCeEEE
Confidence 458999999999998774332 222232 333 579999999999997431 223445444431 3578899
Q ss_pred EeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 98 FSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 98 iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+||.++ .|+++|.+.|. . ..++++|.||||||||++
T Consensus 147 vSA~~g-----------------~gi~~L~~~l~----g------k~~~~~G~sgvGKStlin 182 (298)
T PRK00098 147 LSAKEG-----------------EGLDELKPLLA----G------KVTVLAGQSGVGKSTLLN 182 (298)
T ss_pred EeCCCC-----------------ccHHHHHhhcc----C------ceEEEECCCCCCHHHHHH
Confidence 999998 89999887762 1 368999999999999985
No 25
>COG1159 Era GTPase [General function prediction only]
Probab=99.63 E-value=3.7e-15 Score=116.51 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=88.0
Q ss_pred CCCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHH
Q psy8220 4 VKPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTW 83 (161)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~ 83 (161)
-+|.|.++++|++.++++++++|+||||+|+.++++..|+.+.+.++. .+.|+|+++||+|..+.+ ..+...
T Consensus 65 h~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-~~~pvil~iNKID~~~~~-------~~l~~~ 136 (298)
T COG1159 65 HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK-TKTPVILVVNKIDKVKPK-------TVLLKL 136 (298)
T ss_pred CCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh-cCCCeEEEEEccccCCcH-------HHHHHH
Confidence 378899999999999999999999999999999999999999888876 568999999999998772 112333
Q ss_pred hhhhccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 84 IPYNSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 84 ~~~~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+... ....++++||+++ .|++.|++.+.+++++
T Consensus 137 ~~~~~~~~~f~~ivpiSA~~g-----------------~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 137 IAFLKKLLPFKEIVPISALKG-----------------DNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHhhCCcceEEEeecccc-----------------CCHHHHHHHHHHhCCC
Confidence 3333211 2346899999999 8999999999988865
No 26
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.63 E-value=7.7e-16 Score=121.80 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=74.8
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHH---hCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeE
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLV---VGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPR 97 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l---~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 97 (161)
.+..+|++++|+|+.+|..+ ...+.+++ .. .++|+++|+||+||.++ .....|..... ..++++++
T Consensus 75 i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~-~~ip~iIVlNK~DL~~~--------~~~~~~~~~~~-~~g~~v~~ 143 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEA-AGIEPVIVLTKADLLDD--------EEEELELVEAL-ALGYPVLA 143 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHH-cCCCEEEEEEHHHCCCh--------HHHHHHHHHHH-hCCCeEEE
Confidence 47899999999999988622 12333333 33 57999999999999865 22233333332 13678899
Q ss_pred EeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 98 FSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 98 iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+||.++ .|+++|...|.. ..++++|.+||||||||.
T Consensus 144 vSA~~g-----------------~gi~~L~~~L~~----------k~~~~~G~sg~GKSTlin 179 (287)
T cd01854 144 VSAKTG-----------------EGLDELREYLKG----------KTSVLVGQSGVGKSTLIN 179 (287)
T ss_pred EECCCC-----------------ccHHHHHhhhcc----------ceEEEECCCCCCHHHHHH
Confidence 999998 899998877642 369999999999999985
No 27
>PRK12288 GTPase RsgA; Reviewed
Probab=99.56 E-value=1.1e-14 Score=117.79 Aligned_cols=104 Identities=20% Similarity=0.142 Sum_probs=71.7
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEe
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFS 99 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS 99 (161)
...+|.+++|.+.. |..+. ..+.+++.. ..+.|.++|+||+||.+.. + ......|...+.. .+++++.+|
T Consensus 118 aANvD~vlIV~s~~-p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~----~-~~~~~~~~~~y~~-~g~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVL-PELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDE----G-RAFVNEQLDIYRN-IGYRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCC-CCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcH----H-HHHHHHHHHHHHh-CCCeEEEEe
Confidence 47899998888865 32221 233333321 1578999999999998751 0 0123445554431 367899999
Q ss_pred ecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 100 SRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
|.++ .|+++|.+.|.. + .++++|.|||||||||+
T Consensus 190 A~tg-----------------~GideL~~~L~~----k------i~~~vG~sgVGKSTLiN 223 (347)
T PRK12288 190 SHTG-----------------EGLEELEAALTG----R------ISIFVGQSGVGKSSLIN 223 (347)
T ss_pred CCCC-----------------cCHHHHHHHHhh----C------CEEEECCCCCCHHHHHH
Confidence 9998 899999888743 1 37899999999999985
No 28
>PRK01889 GTPase RsgA; Reviewed
Probab=99.49 E-value=1.2e-13 Score=112.37 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=72.2
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHH---hCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLV---VGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l---~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
+..+|.+++|+++..++.. ..+.+++ .. .+.+.++|+||+||++.. +....|...+. .+++++++
T Consensus 110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~-~~i~piIVLNK~DL~~~~-------~~~~~~~~~~~--~g~~Vi~v 177 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWE-SGAEPVIVLTKADLCEDA-------EEKIAEVEALA--PGVPVLAV 177 (356)
T ss_pred EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHH-cCCCEEEEEEChhcCCCH-------HHHHHHHHHhC--CCCcEEEE
Confidence 5789999999999643332 2344443 22 578889999999998751 11122333333 47789999
Q ss_pred eecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 99 SSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 99 Sa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
|+.++ .|+++|...|.. +-+++++|.||||||||+.
T Consensus 178 Sa~~g-----------------~gl~~L~~~L~~---------g~~~~lvG~sgvGKStLin 213 (356)
T PRK01889 178 SALDG-----------------EGLDVLAAWLSG---------GKTVALLGSSGVGKSTLVN 213 (356)
T ss_pred ECCCC-----------------ccHHHHHHHhhc---------CCEEEEECCCCccHHHHHH
Confidence 99998 899998888631 1479999999999999874
No 29
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.40 E-value=2.9e-12 Score=105.28 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=88.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
.++++.||++++|+|+++|++.+|..+..++.+ .++++++|+||||+.++. ...+.+.-......+....+.|++++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~-~g~~~vIvvNKWDl~~~~--~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEE-AGRGIVIVVNKWDLVEED--EATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH-cCCCeEEEEEccccCCch--hhHHHHHHHHHHHHhccccCCeEEEE
Confidence 489999999999999999999999999999887 799999999999998751 11111111111122222236789999
Q ss_pred eecCCCCcchhh---hhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 99 SSRSQKDAQTER---DLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 99 Sa~~~~~~~~~~---~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
||.++.+..+++ ...+.+++.+.++..|++.|......
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~ 372 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAK 372 (444)
T ss_pred EecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHh
Confidence 999997776654 58889999999999999999887643
No 30
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.39 E-value=2.4e-12 Score=95.64 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=76.7
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|.|. .|+.++ ..++..+|++|+|+|+.++...+..+....+.. .+.|+++|+||+|+... .+.+..+.+.
T Consensus 77 tPG~~--~f~~~~-~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~-~~~p~ivvlNK~D~~~~-----~~~~~~~~~~ 147 (188)
T PF00009_consen 77 TPGHE--DFIKEM-IRGLRQADIAILVVDANDGIQPQTEEHLKILRE-LGIPIIVVLNKMDLIEK-----ELEEIIEEIK 147 (188)
T ss_dssp ESSSH--HHHHHH-HHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH-TT-SEEEEEETCTSSHH-----HHHHHHHHHH
T ss_pred ccccc--ceeecc-cceecccccceeeeecccccccccccccccccc-cccceEEeeeeccchhh-----hHHHHHHHHH
Confidence 36664 377888 688999999999999999887777777776765 68999999999999843 1112223333
Q ss_pred hhh----ccC--CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 85 PYN----SIQ--SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 85 ~~~----~~~--~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+ ... ...|++++||.++ .|+++|++.|.+++|
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g-----------------~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTG-----------------DGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTT-----------------BTHHHHHHHHHHHS-
T ss_pred HHhccccccCccccceEEEEecCCC-----------------CCHHHHHHHHHHhCc
Confidence 222 111 1357999999999 999999999998876
No 31
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.39 E-value=5.5e-12 Score=98.89 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=71.8
Q ss_pred cchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh
Q psy8220 8 EMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN 87 (161)
Q Consensus 8 ~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
+.+.+.|.+.+..++++||++++|+|++.+... +..+.+.+.. .++|+++|+||+|+.++ +....+...+
T Consensus 63 ~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-~~~p~ilV~NK~Dl~~~--------~~~~~~~~~~ 132 (270)
T TIGR00436 63 HSLNRLMMKEARSAIGGVDLILFVVDSDQWNGD-GEFVLTKLQN-LKRPVVLTRNKLDNKFK--------DKLLPLIDKY 132 (270)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCCCCch-HHHHHHHHHh-cCCCEEEEEECeeCCCH--------HHHHHHHHHH
Confidence 344555666557899999999999999876543 2555666655 57999999999999754 2222222222
Q ss_pred ccCC-CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 88 SIQS-IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 88 ~~~~-~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.... ..+++++||+++ .|+++|++.|.++++.
T Consensus 133 ~~~~~~~~v~~iSA~~g-----------------~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 133 AILEDFKDIVPISALTG-----------------DNTSFLAAFIEVHLPE 165 (270)
T ss_pred HhhcCCCceEEEecCCC-----------------CCHHHHHHHHHHhCCC
Confidence 1111 236899999999 8999999999887764
No 32
>PRK00089 era GTPase Era; Reviewed
Probab=99.25 E-value=8.3e-11 Score=93.00 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=74.7
Q ss_pred CcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 7 MEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 7 ~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
.+.+++.+.+.+..++..+|++++|+|+++++...+..+.+.+.. .+.|+++|+||+|+.... +.+......
T Consensus 67 ~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-~~~pvilVlNKiDl~~~~-------~~l~~~~~~ 138 (292)
T PRK00089 67 KRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK-VKTPVILVLNKIDLVKDK-------EELLPLLEE 138 (292)
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh-cCCCEEEEEECCcCCCCH-------HHHHHHHHH
Confidence 345566677776889999999999999998776666677676654 578999999999998431 222223333
Q ss_pred hccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 87 NSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 87 ~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+... ...+++++||+++ .|+++|++.|.+.++
T Consensus 139 l~~~~~~~~i~~iSA~~~-----------------~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 139 LSELMDFAEIVPISALKG-----------------DNVDELLDVIAKYLP 171 (292)
T ss_pred HHhhCCCCeEEEecCCCC-----------------CCHHHHHHHHHHhCC
Confidence 3211 2356899999998 788888888877764
No 33
>PRK15494 era GTPase Era; Provisional
Probab=99.24 E-value=1.2e-10 Score=94.23 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.+.++..|.+.++.++..||++|+|+|+++++...+..+.+.+.. .+.|.++|+||+|+.+. .. .....+..
T Consensus 113 ~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~-~~~p~IlViNKiDl~~~-----~~-~~~~~~l~ 185 (339)
T PRK15494 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS-LNIVPIFLLNKIDIESK-----YL-NDIKAFLT 185 (339)
T ss_pred CcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh-cCCCEEEEEEhhcCccc-----cH-HHHHHHHH
Confidence 3444555555555678999999999999988776665666666655 56788999999998643 11 11222222
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
... ...+++++||+++ .|+++|++.|.+.++.
T Consensus 186 ~~~--~~~~i~~iSAktg-----------------~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 186 ENH--PDSLLFPISALSG-----------------KNIDGLLEYITSKAKI 217 (339)
T ss_pred hcC--CCcEEEEEeccCc-----------------cCHHHHHHHHHHhCCC
Confidence 111 1346899999999 8899999998887754
No 34
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.17 E-value=7.3e-10 Score=78.61 Aligned_cols=91 Identities=20% Similarity=0.156 Sum_probs=66.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
+.+.+...+..+|++++|+|++++....+..+..++.. .+.|+++|+||+|+.+. .........+ ...
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~~--------~~~~~~~~~~---~~~ 133 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK-SKKPVILVVNKVDNIKE--------EDEAAEFYSL---GFG 133 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHh-cCCCEEEEEECcccCCh--------HHHHHHHHhc---CCC
Confidence 33333677899999999999998877666677777765 57999999999999875 2111111111 122
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+++++|++++ .|+++|.+.|.+.
T Consensus 134 ~~~~~Sa~~~-----------------~gv~~l~~~l~~~ 156 (157)
T cd01894 134 EPIPISAEHG-----------------RGIGDLLDAILEL 156 (157)
T ss_pred CeEEEecccC-----------------CCHHHHHHHHHhh
Confidence 6789999998 8999999988653
No 35
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.16 E-value=1.7e-10 Score=95.24 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
.... ++++++||+||+|+|++.++...+..+.+.+ . .++|+++|+||+||.++ ...... .+. .+.
T Consensus 287 IeRs-~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~-~-~~~~~i~v~NK~DL~~~--------~~~~~~--~~~--~~~ 351 (454)
T COG0486 287 IERA-KKAIEEADLVLFVLDASQPLDKEDLALIELL-P-KKKPIIVVLNKADLVSK--------IELESE--KLA--NGD 351 (454)
T ss_pred HHHH-HHHHHhCCEEEEEEeCCCCCchhhHHHHHhc-c-cCCCEEEEEechhcccc--------cccchh--hcc--CCC
Confidence 3444 6899999999999999998777777776633 2 57999999999999886 211111 112 355
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
+.+.+|++++ .|++.|.+.|.+++...
T Consensus 352 ~~i~iSa~t~-----------------~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 352 AIISISAKTG-----------------EGLDALREAIKQLFGKG 378 (454)
T ss_pred ceEEEEecCc-----------------cCHHHHHHHHHHHHhhc
Confidence 7899999999 99999999999987643
No 36
>COG2262 HflX GTPases [General function prediction only]
Probab=99.14 E-value=2.4e-10 Score=93.00 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQT 82 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 82 (161)
|++.-.+|...+ +...+||++|+|+|+++|..... ....+.+.+. ...|+|+|+||+|+++. +...
T Consensus 255 P~~LV~AFksTL--EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~--------~~~~- 323 (411)
T COG2262 255 PHPLVEAFKSTL--EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED--------EEIL- 323 (411)
T ss_pred ChHHHHHHHHHH--HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc--------hhhh-
Confidence 555565666665 78889999999999999843211 2233444442 46899999999998876 2211
Q ss_pred HhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 83 WIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 83 ~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+. ... +.+++||.++ .|++.|++.|.+.++.
T Consensus 324 --~~~~--~~~~~~v~iSA~~~-----------------~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 324 --AELE--RGSPNPVFISAKTG-----------------EGLDLLRERIIELLSG 357 (411)
T ss_pred --hhhh--hcCCCeEEEEeccC-----------------cCHHHHHHHHHHHhhh
Confidence 1122 122 4899999999 9999999999988764
No 37
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.12 E-value=6.3e-10 Score=85.20 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=71.1
Q ss_pred CCcchHHHHHHHHHHHhh--hccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHH
Q psy8220 6 PMEMRGVVVQEIERSVVE--AADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTW 83 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~--~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~ 83 (161)
|.|. .|.+.. ...+. .+|++++|+|+..+....+..+..++.. .+.|+++|+||+|+.++. .+......+
T Consensus 92 pG~~--~~~~~~-~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~-~~ip~ivvvNK~D~~~~~----~~~~~~~~l 163 (224)
T cd04165 92 AGHE--RYLKTT-LFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA-LNIPVFVVVTKIDLAPAN----ILQETLKDL 163 (224)
T ss_pred CCcH--HHHHHH-HHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCEEEEEECccccCHH----HHHHHHHHH
Confidence 5553 355666 45554 7999999999998888777787777776 689999999999997651 111222222
Q ss_pred hhhhc-------------------------cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 84 IPYNS-------------------------IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 84 ~~~~~-------------------------~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+. .....|++.+||.++ .|+++|.+.|...
T Consensus 164 ~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg-----------------~Gi~~L~~~L~~l 221 (224)
T cd04165 164 KRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG-----------------EGLDLLHAFLNLL 221 (224)
T ss_pred HHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc-----------------cCHHHHHHHHHhc
Confidence 22222 001237788899998 9999999888653
No 38
>PRK09866 hypothetical protein; Provisional
Probab=99.11 E-value=8e-10 Score=94.87 Aligned_cols=94 Identities=17% Similarity=0.070 Sum_probs=66.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCC--CcEEEEeecCCCCCcccccccHHHHHHHHhh-hhcc-C-CCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG--KKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-YNSI-Q-SIY 93 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~--k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~ 93 (161)
.+++++||+||||+|++.+.+..+..+.+.+.+ .+ .|+++|+||+|+.+.. . ...+.+..+.. .+.. . ...
T Consensus 253 ~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk-~~K~~PVILVVNKIDl~dre--e-ddkE~Lle~V~~~L~q~~i~f~ 328 (741)
T PRK09866 253 NQQLARASAVLAVLDYTQLKSISDEEVREAILA-VGQSVPLYVLVNKFDQQDRN--S-DDADQVRALISGTLMKGCITPQ 328 (741)
T ss_pred HHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHh-cCCCCCEEEEEEcccCCCcc--c-chHHHHHHHHHHHHHhcCCCCc
Confidence 457999999999999998877788888888876 45 4999999999987531 0 00122333322 1110 1 123
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.++++||+++ .|++.|++.|.+.
T Consensus 329 eIfPVSAlkG-----------------~nid~LLdeI~~~ 351 (741)
T PRK09866 329 QIFPVSSMWG-----------------YLANRARHELANN 351 (741)
T ss_pred eEEEEeCCCC-----------------CCHHHHHHHHHhC
Confidence 4899999999 8999999998764
No 39
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.10 E-value=5.6e-10 Score=88.13 Aligned_cols=105 Identities=23% Similarity=0.175 Sum_probs=71.4
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHH--HHhhhhccCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQ--TWIPYNSIQSIYS 94 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 94 (161)
+-.+..+|-+++|+-+.+|..+. ..+.++|.- ..+...++++||+||++. +... .+...+. ..+++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~--------~~~~~~~~~~~y~-~~gy~ 143 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDD--------EEAAVKELLREYE-DIGYP 143 (301)
T ss_pred CCcccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcc--------hHHHHHHHHHHHH-hCCee
Confidence 33455678888888887775432 234444432 147777888999999987 2222 2333332 14788
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
++.+|++++ .|+++|.+.| ..+ ...++|.++||||||++
T Consensus 144 v~~~s~~~~-----------------~~~~~l~~~l----~~~------~svl~GqSGVGKSSLiN 182 (301)
T COG1162 144 VLFVSAKNG-----------------DGLEELAELL----AGK------ITVLLGQSGVGKSTLIN 182 (301)
T ss_pred EEEecCcCc-----------------ccHHHHHHHh----cCC------eEEEECCCCCcHHHHHH
Confidence 999999988 8888877765 322 46778999999999986
No 40
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.10 E-value=1.4e-09 Score=81.90 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCC-CCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc--
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPM-GTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI-- 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~-~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~-- 89 (161)
++... ...+..+|++++|+|++++. ..........+.....+|+++|+||+|+.+.. ......+...+.+..
T Consensus 96 ~~~~~-~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~----~~~~~~~~i~~~~~~~~ 170 (203)
T cd01888 96 LMATM-LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE----QALENYEQIKKFVKGTI 170 (203)
T ss_pred HHHHH-HHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHH----HHHHHHHHHHHHHhccc
Confidence 44555 78888999999999999752 23333333333321235789999999998641 111111222222221
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
....+++++||+++ .|+++|++.|.+.++.
T Consensus 171 ~~~~~i~~vSA~~g-----------------~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 171 AENAPIIPISAQLK-----------------YNIDVLLEYIVKKIPT 200 (203)
T ss_pred cCCCcEEEEeCCCC-----------------CCHHHHHHHHHHhCCC
Confidence 12467899999999 9999999999887653
No 41
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.09 E-value=1.8e-09 Score=80.31 Aligned_cols=101 Identities=19% Similarity=0.078 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh----hh
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP----YN 87 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~----~~ 87 (161)
.++++. ...+..+|.+++|+|++++....+......... .+.|+++|+||+|+.... ......+.+.+ .+
T Consensus 80 ~~~~~~-~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~~~~~iiv~NK~Dl~~~~----~~~~~~~~~~~~l~~~~ 153 (192)
T cd01889 80 SLIRTI-IGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-LCKKLIVVLNKIDLIPEE----ERERKIEKMKKKLQKTL 153 (192)
T ss_pred HHHHHH-HHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-cCCCEEEEEECcccCCHH----HHHHHHHHHHHHHHHHH
Confidence 456777 577788999999999988654433322222222 468999999999997541 00011122211 11
Q ss_pred c--cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 88 S--IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 88 ~--~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
. ...+.+++++||+++ .|+++|++.|.+..+
T Consensus 154 ~~~~~~~~~vi~iSa~~g-----------------~gi~~L~~~l~~~~~ 186 (192)
T cd01889 154 EKTRFKNSPIIPVSAKPG-----------------GGEAELGKDLNNLIV 186 (192)
T ss_pred HhcCcCCCCEEEEeccCC-----------------CCHHHHHHHHHhccc
Confidence 1 012567999999999 999999999877654
No 42
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.08 E-value=2e-09 Score=78.02 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
.+.+.+ ..++..||++|+|+|++++.......+.+. . .++|+++++||+|+.... . +....|...+. .
T Consensus 53 ~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~-~~~~ii~v~nK~Dl~~~~-----~-~~~~~~~~~~~--~ 120 (158)
T PRK15467 53 RWYHAL-ITTLQDVDMLIYVHGANDPESRLPAGLLDI--G-VSKRQIAVISKTDMPDAD-----V-AATRKLLLETG--F 120 (158)
T ss_pred HHHHHH-HHHHhcCCEEEEEEeCCCcccccCHHHHhc--c-CCCCeEEEEEccccCccc-----H-HHHHHHHHHcC--C
Confidence 345665 567899999999999987765444444332 1 368999999999986531 1 22233333322 1
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..|++++||+++ .|+++|.+.|.+....
T Consensus 121 ~~p~~~~Sa~~g-----------------~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 121 EEPIFELNSHDP-----------------QSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCCEEEEECCCc-----------------cCHHHHHHHHHHhchh
Confidence 248999999999 9999999999887753
No 43
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.08 E-value=6.5e-10 Score=92.20 Aligned_cols=112 Identities=20% Similarity=0.151 Sum_probs=74.5
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
.+++..||++|+|+|+.++.+..+..+...+.+ .++|+++|+||+|+.... ....+........+......|++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~-~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILE-AGKALVIVVNKWDLVKDE---KTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-cCCcEEEEEECcccCCCH---HHHHHHHHHHHHhcccCCCCceEEE
Confidence 467899999999999999988777777776665 689999999999998321 0111111111122221135689999
Q ss_pred eecCCCCcchhh---hhhhhccccccCHHHHHHHHHhHh
Q psy8220 99 SSRSQKDAQTER---DLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 99 Sa~~~~~~~~~~---~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
||+++.+....+ ...+.....+..+..|.+.|.+..
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~ 363 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAV 363 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 999985544433 345555666677777777776654
No 44
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.08 E-value=2.4e-09 Score=76.13 Aligned_cols=98 Identities=18% Similarity=0.205 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 11 GVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 11 ~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
++.+...+...+..+|++++|+|++.+....+..+...+.. .+.|+++|+||+|+.... +.+..+...+...
T Consensus 69 ~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~-~~~~~iiv~nK~Dl~~~~-------~~~~~~~~~~~~~ 140 (168)
T cd04163 69 GERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKK-SKTPVILVLNKIDLVKDK-------EDLLPLLEKLKEL 140 (168)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHH-hCCCEEEEEEchhccccH-------HHHHHHHHHHHhc
Confidence 34444444677899999999999998866666666666654 468999999999998431 3334444444422
Q ss_pred C-CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 S-IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~-~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
. ..+++.+|++++ .|+++|.+.|.+.
T Consensus 141 ~~~~~~~~~s~~~~-----------------~~~~~l~~~l~~~ 167 (168)
T cd04163 141 GPFAEIFPISALKG-----------------ENVDELLEEIVKY 167 (168)
T ss_pred cCCCceEEEEeccC-----------------CChHHHHHHHHhh
Confidence 2 357899999998 8999999998764
No 45
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.07 E-value=1.7e-09 Score=81.11 Aligned_cols=115 Identities=16% Similarity=0.049 Sum_probs=71.7
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHHH-
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQT- 82 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~- 82 (161)
.|.|. .|+.+. ..++..+|++++|+|+..+...++..+..++.. .+.| +|+++||+|+..+. +..+.+..
T Consensus 72 tPG~~--~~~~~~-~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~~~iIvviNK~D~~~~~----~~~~~~~~~ 143 (195)
T cd01884 72 CPGHA--DYIKNM-ITGAAQMDGAILVVSATDGPMPQTREHLLLARQ-VGVPYIVVFLNKADMVDDE----ELLELVEME 143 (195)
T ss_pred CcCHH--HHHHHH-HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCcEEEEEeCCCCCCcH----HHHHHHHHH
Confidence 35553 467777 789999999999999998877777777777765 5776 77899999997541 11111111
Q ss_pred HhhhhccC----CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 83 WIPYNSIQ----SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 83 ~~~~~~~~----~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
....+... ...|++++||.++....+ . ..+. .+...|+++|.++.
T Consensus 144 i~~~l~~~g~~~~~v~iipiSa~~g~n~~~--~---~~w~--~~~~~l~~~l~~~~ 192 (195)
T cd01884 144 VRELLSKYGFDGDNTPIVRGSALKALEGDD--P---NKWV--KKILELLDALDSYI 192 (195)
T ss_pred HHHHHHHhcccccCCeEEEeeCccccCCCC--C---Ccch--hcHhHHHHHHHhCC
Confidence 11222211 236799999999832211 0 0000 14577888776543
No 46
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.06 E-value=1.7e-09 Score=77.14 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
-++..+ .-...+||+|++|.|++++.....+.+...+ ++|+|-|+||+|+.+.. +.++.-.+.+....
T Consensus 52 ~~y~aL-i~ta~dad~V~ll~dat~~~~~~pP~fa~~f----~~pvIGVITK~Dl~~~~-------~~i~~a~~~L~~aG 119 (143)
T PF10662_consen 52 RFYHAL-IVTAQDADVVLLLQDATEPRSVFPPGFASMF----NKPVIGVITKIDLPSDD-------ANIERAKKWLKNAG 119 (143)
T ss_pred HHHHHH-HHHHhhCCEEEEEecCCCCCccCCchhhccc----CCCEEEEEECccCccch-------hhHHHHHHHHHHcC
Confidence 456666 6777899999999999999888888776543 59999999999998331 22232223332111
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
-..++.+|+.++ .|+++|.+.|.+
T Consensus 120 ~~~if~vS~~~~-----------------eGi~eL~~~L~~ 143 (143)
T PF10662_consen 120 VKEIFEVSAVTG-----------------EGIEELKDYLEE 143 (143)
T ss_pred CCCeEEEECCCC-----------------cCHHHHHHHHhC
Confidence 234689999999 999999998863
No 47
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.04 E-value=4.4e-09 Score=76.67 Aligned_cols=97 Identities=18% Similarity=0.100 Sum_probs=64.0
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
...+...+..+|++|+|+|++++....+......+.. .+.|+++|+||+|+.+.. .......+.+.+. ....+
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-~~~~iiiv~NK~Dl~~~~-----~~~~~~~~~~~~~-~~~~~ 153 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-NNLEIIPVINKIDLPSAD-----PERVKQQIEDVLG-LDPSE 153 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-cCCCEEEEEECCCCCcCC-----HHHHHHHHHHHhC-CCccc
Confidence 3444678899999999999988765444333333333 478999999999986431 0011122222222 01224
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++.+||+++ .|+++|.+.|.+.++
T Consensus 154 ~~~~Sa~~g-----------------~gi~~l~~~l~~~~~ 177 (179)
T cd01890 154 AILVSAKTG-----------------LGVEDLLEAIVERIP 177 (179)
T ss_pred EEEeeccCC-----------------CCHHHHHHHHHhhCC
Confidence 789999999 999999999877653
No 48
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.04 E-value=2.9e-09 Score=77.88 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=68.3
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc-----
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI----- 89 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~----- 89 (161)
...+...+..+|.+++|+|+..+.......+...+.. .+.|+++|+||+|+..+. ..........+.+..
T Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~i~iv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GGLPIIVAINKIDRVGEE----DLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CCCCeEEEEECCCCcchh----cHHHHHHHHHHHHccccccc
Confidence 3344678889999999999998776555555555554 589999999999998631 111111111122211
Q ss_pred --------CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 --------QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 --------~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
....+++++||+++ .|+++|.+.|.+.++
T Consensus 151 ~~~~~~~~~~~~~v~~~Sa~~g-----------------~gi~~l~~~l~~~l~ 187 (189)
T cd00881 151 TKEEGTRNGLLVPIVPGSALTG-----------------IGVEELLEAIVEHLP 187 (189)
T ss_pred hhhhhcccCCcceEEEEecccC-----------------cCHHHHHHHHHhhCC
Confidence 12467899999998 899999999988765
No 49
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.03 E-value=2.9e-09 Score=74.98 Aligned_cols=90 Identities=18% Similarity=0.103 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
+++.+ ...+..||++++|+|++++.+..+..+.+. ..+|+++|+||+|+.+.. ... +....+.+.. ..
T Consensus 52 ~~~~~-~~~~~~ad~vilv~d~~~~~s~~~~~~~~~----~~~p~ilv~NK~Dl~~~~---~~~-~~~~~~~~~~---~~ 119 (142)
T TIGR02528 52 LYSAL-IVTAADADVIALVQSATDPESRFPPGFASI----FVKPVIGLVTKIDLAEAD---VDI-ERAKELLETA---GA 119 (142)
T ss_pred HHHHH-HHHhhcCCEEEEEecCCCCCcCCChhHHHh----ccCCeEEEEEeeccCCcc---cCH-HHHHHHHHHc---CC
Confidence 44555 356899999999999998877655444332 246999999999997531 011 1122332221 12
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHH
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLG 131 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~ 131 (161)
.+++.+||+++ .|+++|.+.|.
T Consensus 120 ~~~~~~Sa~~~-----------------~gi~~l~~~l~ 141 (142)
T TIGR02528 120 EPIFEISSVDE-----------------QGLEALVDYLN 141 (142)
T ss_pred CcEEEEecCCC-----------------CCHHHHHHHHh
Confidence 36889999999 89999988763
No 50
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.02 E-value=3.2e-09 Score=75.90 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC--
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ-- 90 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-- 90 (161)
+.... ...+..||++++|+|+++++..........+.....+|+++|+||+|+.+.. ........+.+.+...
T Consensus 64 ~~~~~-~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04171 64 FIKNM-LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED----WLELVEEEIRELLAGTFL 138 (164)
T ss_pred HHHHH-HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH----HHHHHHHHHHHHHHhcCc
Confidence 34444 5678899999999999875544333333333321235999999999997641 0001112222333211
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
...+++++||+++ .|+++|.+.|.+
T Consensus 139 ~~~~~~~~Sa~~~-----------------~~v~~l~~~l~~ 163 (164)
T cd04171 139 ADAPIFPVSAVTG-----------------EGIEELKEYLDE 163 (164)
T ss_pred CCCcEEEEeCCCC-----------------cCHHHHHHHHhh
Confidence 2467899999999 899999888754
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.02 E-value=2.5e-09 Score=88.91 Aligned_cols=111 Identities=21% Similarity=0.185 Sum_probs=75.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
.+++..+|++|+|+|+..+...++..+..++.. .++|+++|+||+|+.+.. ...+........+......|++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~-~~~~~ivv~NK~Dl~~~~----~~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALE-AGRALVIVVNKWDLVDEK----TMEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCCcEEEEEECccCCCHH----HHHHHHHHHHHhcccccCCCEEEE
Confidence 468899999999999999988888777777765 689999999999998541 010111111122221235689999
Q ss_pred eecCCCCcchhh---hhhhhccccccCHHHHHHHHHhHh
Q psy8220 99 SSRSQKDAQTER---DLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 99 Sa~~~~~~~~~~---~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
||+++.+....+ ...+.....+..+..|.+.|.+..
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~ 363 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAV 363 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHH
Confidence 999985544433 344555666677777777777655
No 52
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.00 E-value=3e-09 Score=86.49 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
++.. .+.+.+||++|+|+|++++....+ ..+.+.+... .++|+++|+||+|+.+. ..+..+ ..
T Consensus 259 f~~t-le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--------~~v~~~---~~-- 324 (351)
T TIGR03156 259 FRAT-LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--------PRIERL---EE-- 324 (351)
T ss_pred HHHH-HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--------HhHHHH---Hh--
Confidence 4444 467899999999999998764322 1222333321 36899999999999764 222211 11
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
...+++++||+++ .|+++|.+.|.+.
T Consensus 325 ~~~~~i~iSAktg-----------------~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 GYPEAVFVSAKTG-----------------EGLDLLLEAIAER 350 (351)
T ss_pred CCCCEEEEEccCC-----------------CCHHHHHHHHHhh
Confidence 1245799999999 9999999998654
No 53
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.98 E-value=4.6e-09 Score=88.50 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=81.3
Q ss_pred HHHHHHH-HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 12 VVVQEIE-RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 12 ~~~~~~~-~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+++..+. ..++..||++++|+|++++.+.++..+...+.. .++|+|+|+||+|+.+.. + ...........+...
T Consensus 280 e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-~~~piIiV~NK~Dl~~~~-~---~~~~~~~i~~~l~~~ 354 (472)
T PRK03003 280 EYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-AGRALVLAFNKWDLVDED-R---RYYLEREIDRELAQV 354 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCCCEEEEEECcccCChh-H---HHHHHHHHHHhcccC
Confidence 4444431 356789999999999999887777666666655 689999999999997641 0 001011111222211
Q ss_pred CCCceeEEeecCCCCcchhh---hhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTER---DLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~---~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
...|++++||+++.+....+ ...+.....+..+.+|++.+.+....
T Consensus 355 ~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~ 403 (472)
T PRK03003 355 PWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAA 403 (472)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 34678999999996655543 35666777888999999998887643
No 54
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.97 E-value=3.2e-09 Score=85.68 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=61.4
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCC----CcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 17 IERSVVEAADVILEVVDARDPMGT----RCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~----~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
.+.+.++++|++|+|+|+++...+ ....+.+.+... .++|+++|+||+|+.+. .....+.+.+.
T Consensus 228 ~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--------~~~~~~~~~l~ 299 (329)
T TIGR02729 228 RFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--------EELAELLKELK 299 (329)
T ss_pred HHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--------HHHHHHHHHHH
Confidence 335677899999999999864211 112222223210 36899999999999765 22233333333
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+..+.+++++||+++ .|+++|.+.|.+.+
T Consensus 300 ~~~~~~vi~iSAktg-----------------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 300 KALGKPVFPISALTG-----------------EGLDELLYALAELL 328 (329)
T ss_pred HHcCCcEEEEEccCC-----------------cCHHHHHHHHHHHh
Confidence 222457899999998 99999999987654
No 55
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.96 E-value=1.5e-10 Score=83.83 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=57.6
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeec
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSR 101 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~ 101 (161)
.++.|++++|+|++.. +.+..+...+.+ .++|+++|+||+|.+.+. ...++ .+.+.+. .+.|++++||.
T Consensus 76 ~~~~D~ii~VvDa~~l--~r~l~l~~ql~e-~g~P~vvvlN~~D~a~~~--g~~id--~~~Ls~~----Lg~pvi~~sa~ 144 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNL--ERNLYLTLQLLE-LGIPVVVVLNKMDEAERK--GIEID--AEKLSER----LGVPVIPVSAR 144 (156)
T ss_dssp HTSSSEEEEEEEGGGH--HHHHHHHHHHHH-TTSSEEEEEETHHHHHHT--TEEE---HHHHHHH----HTS-EEEEBTT
T ss_pred hcCCCEEEEECCCCCH--HHHHHHHHHHHH-cCCCEEEEEeCHHHHHHc--CCEEC--HHHHHHH----hCCCEEEEEeC
Confidence 3689999999999863 344555556666 689999999999987651 11111 1222223 36899999999
Q ss_pred CCCCcchhhhhhhhccccccCHHHHHHHH
Q psy8220 102 SQKDAQTERDLKAINVSSCVGAELLMLLL 130 (161)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~g~~~L~~~l 130 (161)
++ .|+++|+++|
T Consensus 145 ~~-----------------~g~~~L~~~I 156 (156)
T PF02421_consen 145 TG-----------------EGIDELKDAI 156 (156)
T ss_dssp TT-----------------BTHHHHHHHH
T ss_pred CC-----------------cCHHHHHhhC
Confidence 99 9999999875
No 56
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.96 E-value=3.7e-09 Score=76.30 Aligned_cols=90 Identities=14% Similarity=0.050 Sum_probs=58.7
Q ss_pred HHHhhhccEEEEEEeCCCCC-CC-CcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC-C
Q psy8220 19 RSVVEAADVILEVVDARDPM-GT-RCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ-S 91 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~-~~-~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~ 91 (161)
.+.+..+|++++|+|++++. .. ....+.+.+... .++|+++|+||+|+.+. .....+...+... .
T Consensus 73 ~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--------~~~~~~~~~~~~~~~ 144 (170)
T cd01898 73 LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--------EELFELLKELLKELW 144 (170)
T ss_pred HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--------hhhHHHHHHHHhhCC
Confidence 45667899999999998762 21 112233333221 26899999999999765 2223333322211 2
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
..+++.+||+++ .|+++|.+.|.+.
T Consensus 145 ~~~~~~~Sa~~~-----------------~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVFPISALTG-----------------EGLDELLRKLAEL 169 (170)
T ss_pred CCCEEEEecCCC-----------------CCHHHHHHHHHhh
Confidence 456899999998 8999999888653
No 57
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.95 E-value=5.1e-09 Score=74.49 Aligned_cols=84 Identities=18% Similarity=0.098 Sum_probs=57.9
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
+.+|++++|+|++.+.. ...+...+.. .++|+++|+||+|+.+.. ....+...+....+.+++++||.+
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~-~~~~~iiv~NK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~iSa~~ 141 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLE-LGLPVVVALNMIDEAEKR--------GIKIDLDKLSELLGVPVVPTSARK 141 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHH-cCCCEEEEEehhhhcccc--------cchhhHHHHHHhhCCCeEEEEccC
Confidence 59999999999987532 2333334444 579999999999997641 111111222211256789999999
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+ .|+++|.+.|.+++
T Consensus 142 ~-----------------~~~~~l~~~l~~~~ 156 (158)
T cd01879 142 G-----------------EGIDELKDAIAELA 156 (158)
T ss_pred C-----------------CCHHHHHHHHHHHh
Confidence 8 89999999987764
No 58
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.95 E-value=1.4e-08 Score=88.00 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=73.0
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHHHH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQTW 83 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~~ 83 (161)
.|.|. .|.+.+ ...+..+|++++|+|+.+++..++.+....+.. .+.| +++|+||+|++++. .+.......
T Consensus 58 tPGhe--~fi~~m-~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~~iIVVlNKiDlv~~~----~~~~v~~ei 129 (614)
T PRK10512 58 VPGHE--KFLSNM-LAGVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNPMLTVALTKADRVDEA----RIAEVRRQV 129 (614)
T ss_pred CCCHH--HHHHHH-HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEECCccCCHH----HHHHHHHHH
Confidence 35553 356666 677899999999999998877666665565554 4566 57999999998641 111111222
Q ss_pred hhhhccC--CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 84 IPYNSIQ--SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 84 ~~~~~~~--~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+... ...|++++||.++ .|+++|.+.|.++...
T Consensus 130 ~~~l~~~~~~~~~ii~VSA~tG-----------------~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 130 KAVLREYGFAEAKLFVTAATEG-----------------RGIDALREHLLQLPER 167 (614)
T ss_pred HHHHHhcCCCCCcEEEEeCCCC-----------------CCCHHHHHHHHHhhcc
Confidence 2232211 1357899999999 9999999999887654
No 59
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.94 E-value=1.9e-08 Score=72.14 Aligned_cols=93 Identities=25% Similarity=0.257 Sum_probs=63.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh-hhhccCCCCceeE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI-PYNSIQSIYSSPR 97 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 97 (161)
...+..+|++++|+|+.++....+..+...+.. .++|+++|+||+|+.+... ... +....+. ..+......++++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~~~~iiv~nK~Dl~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILE-EGKALVIVVNKWDLVEKDS--KTM-KEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-cCCCEEEEEeccccCCccH--HHH-HHHHHHHHhhcccccCCceEE
Confidence 356789999999999998877666666665554 5799999999999976410 011 1111111 1221112357899
Q ss_pred EeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 98 FSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 98 iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
+||+++ .|++++.+.+.+
T Consensus 155 ~Sa~~~-----------------~~i~~~~~~l~~ 172 (174)
T cd01895 155 ISALTG-----------------QGVDKLFDAIDE 172 (174)
T ss_pred EeccCC-----------------CCHHHHHHHHHH
Confidence 999998 999999988765
No 60
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.94 E-value=6.7e-09 Score=83.99 Aligned_cols=94 Identities=14% Similarity=0.059 Sum_probs=61.9
Q ss_pred HHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
.+.++++|++++|+|++++.... ...+.+.+... .++|+++|+||+|+.+.. +........+......
T Consensus 231 lrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~-------~~~~~~~~~~~~~~~~ 303 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE-------EEREKRAALELAALGG 303 (335)
T ss_pred HHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch-------hHHHHHHHHHHHhcCC
Confidence 56788999999999998653211 12333333221 268999999999997651 1111111111111246
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+++++||+++ .|+++|++.|.+.+..
T Consensus 304 ~i~~iSAktg-----------------~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFLISAVTG-----------------EGLDELLRALWELLEE 329 (335)
T ss_pred CEEEEEcCCC-----------------CCHHHHHHHHHHHHHh
Confidence 7899999999 9999999999887754
No 61
>PRK12736 elongation factor Tu; Reviewed
Probab=98.94 E-value=1.7e-08 Score=83.35 Aligned_cols=118 Identities=15% Similarity=0.018 Sum_probs=73.6
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHHHH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQTW 83 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~~ 83 (161)
.|.|. +|+..+ ...+..+|++++|+|++.+...++.+...++.. .+.| +|+++||+|+.+.+.....+.+.+..+
T Consensus 82 tPGh~--~f~~~~-~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~-~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 82 CPGHA--DYVKNM-ITGAAQMDGAILVVAATDGPMPQTREHILLARQ-VGVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred CCCHH--HHHHHH-HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH-cCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 36654 577777 678899999999999998877777776666665 5788 578899999975410000011111222
Q ss_pred hhhhcc-CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 84 IPYNSI-QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 84 ~~~~~~-~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
...+.. ....|++++||.++..... .-..++.+|++.|.++++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~---------~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDP---------KWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCC---------cchhhHHHHHHHHHHhCC
Confidence 111110 0135789999998621100 001368899999988775
No 62
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.93 E-value=1.7e-08 Score=75.06 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=65.7
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh---c---cC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN---S---IQ 90 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~---~---~~ 90 (161)
.+...+..+|.+++|+|++++.......+...+.. .+.|+++|+||+|+.... ...........+ . ..
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~ 154 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-LGLKPIVVINKIDRPDAR-----PEEVVDEVFDLFIELGATEEQ 154 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-cCCCEEEEEECCCCCCCC-----HHHHHHHHHHHHHHhCCcccc
Confidence 34678899999999999987654433444444433 578999999999997541 111122222222 1 11
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++++||+++.+... ......++++|.+.|.++.|
T Consensus 155 ~~~~iv~~Sa~~g~~~~~-------~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 155 LDFPVLYASAKNGWASLN-------LEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred CccCEEEeehhccccccc-------cccchhhHHHHHHHHHhcCC
Confidence 256789999999832211 11123677888888877765
No 63
>CHL00071 tufA elongation factor Tu
Probab=98.91 E-value=2.1e-08 Score=83.17 Aligned_cols=123 Identities=17% Similarity=0.024 Sum_probs=74.1
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHH-H
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQ-T 82 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~-~ 82 (161)
.|.|. .|+..+ ...+..+|++++|+|+..+...++.+...++.. .+.| +|+++||+|+.+.. +..+.+. .
T Consensus 82 tPGh~--~~~~~~-~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~-~g~~~iIvvvNK~D~~~~~----~~~~~~~~~ 153 (409)
T CHL00071 82 CPGHA--DYVKNM-ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ-VGVPNIVVFLNKEDQVDDE----ELLELVELE 153 (409)
T ss_pred CCChH--HHHHHH-HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCEEEEEEEccCCCCHH----HHHHHHHHH
Confidence 46654 577887 688999999999999998887777777776665 5788 67899999998641 1111111 1
Q ss_pred HhhhhccC----CCCceeEEeecCCCCcchhhhhhhh-ccccccCHHHHHHHHHhHhh
Q psy8220 83 WIPYNSIQ----SIYSSPRFSSRSQKDAQTERDLKAI-NVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 83 ~~~~~~~~----~~~~~i~iSa~~~~~~~~~~~~~~~-~~~~~~g~~~L~~~l~~~~~ 135 (161)
....+... ...|++++||.++............ ...--.+...|++.|.++.+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 22222211 1257899999887321100000000 00000156889998887653
No 64
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.91 E-value=3e-08 Score=71.29 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh--ccCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN--SIQS 91 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~ 91 (161)
+..++...+..+|++++|+|++++...........+.. .++|+++|+||+|+.... .......+....... ....
T Consensus 63 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 139 (168)
T cd01887 63 FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-ANVPFIVALNKIDKPNAN--PERVKNELSELGLQGEDEWGG 139 (168)
T ss_pred HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cCCCEEEEEEceeccccc--HHHHHHHHHHhhccccccccC
Confidence 34454567789999999999987654333344444544 579999999999987541 000001111111000 0002
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+++++||.++ .|+++|.+.|.+...
T Consensus 140 ~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 166 (168)
T cd01887 140 DVQIVPTSAKTG-----------------EGIDDLLEAILLLAE 166 (168)
T ss_pred cCcEEEeecccC-----------------CCHHHHHHHHHHhhh
Confidence 357899999999 899999999987653
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.91 E-value=1e-08 Score=90.35 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=75.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHH-HHhhhhccCCCCceeE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQ-TWIPYNSIQSIYSSPR 97 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 97 (161)
..+++.||++++|+|++++...++..+...+.. .++|+++|+||+|+.+.. .. +.+. .+...+......++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~-~~~piIiV~NK~DL~~~~----~~-~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVMSMAVD-AGRALVLVFNKWDLMDEF----RR-QRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEEEEEEchhcCChh----HH-HHHHHHHHHhccCCCCCCEEE
Confidence 456899999999999999887777666666655 589999999999998641 00 1111 1222222112457899
Q ss_pred EeecCCCCcchhh---hhhhhccccccCHHHHHHHHHhHhh
Q psy8220 98 FSSRSQKDAQTER---DLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 98 iSa~~~~~~~~~~---~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+||+++.+...++ ...+.+...+.++.+|.+.+.+...
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~ 641 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQA 641 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHh
Confidence 9999996554443 3455566677788888888877653
No 66
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.90 E-value=1.5e-08 Score=85.10 Aligned_cols=107 Identities=9% Similarity=0.042 Sum_probs=68.4
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCC-CCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDP-MGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~-~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
|.|. .|++.+ ...+..+|.+++|+|+..+ ...+..+-...+....-+++|+|+||+|+.+.. ...+......
T Consensus 125 PGH~--~fi~~m-~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~----~~~~~~~ei~ 197 (460)
T PTZ00327 125 PGHD--ILMATM-LNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA----QAQDQYEEIR 197 (460)
T ss_pred CCHH--HHHHHH-HHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHH----HHHHHHHHHH
Confidence 4443 467777 6888899999999999975 333322222222221235689999999998641 1111122222
Q ss_pred hhhcc--CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 85 PYNSI--QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 85 ~~~~~--~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+.+.. ....|++++||.++ .|++.|++.|.+.++.
T Consensus 198 ~~l~~~~~~~~~iipVSA~~G-----------------~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 198 NFVKGTIADNAPIIPISAQLK-----------------YNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHhhccCCCeEEEeeCCCC-----------------CCHHHHHHHHHhhCCC
Confidence 22211 13568999999999 8999999999976653
No 67
>PRK00049 elongation factor Tu; Reviewed
Probab=98.89 E-value=3.9e-08 Score=81.23 Aligned_cols=116 Identities=15% Similarity=0.028 Sum_probs=74.4
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEE-EEeecCCCCCcccccccHHHHHH-H
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLV-IVINKAGKPSTKIQSGSMAQIFQ-T 82 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~i-lVlNK~Dl~~~~~~~~~~~~~~~-~ 82 (161)
.|.|. .|+..+ ...+..||++++|+|+..+...++.++..++.. .+.|.+ +++||+|+.+.. +..+.+. .
T Consensus 82 tPG~~--~f~~~~-~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~-~g~p~iiVvvNK~D~~~~~----~~~~~~~~~ 153 (396)
T PRK00049 82 CPGHA--DYVKNM-ITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGVPYIVVFLNKCDMVDDE----ELLELVEME 153 (396)
T ss_pred CCCHH--HHHHHH-HhhhccCCEEEEEEECCCCCchHHHHHHHHHHH-cCCCEEEEEEeecCCcchH----HHHHHHHHH
Confidence 46663 678888 688899999999999998877777777777665 578976 589999997541 1101111 1
Q ss_pred HhhhhccC----CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 83 WIPYNSIQ----SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 83 ~~~~~~~~----~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
....+... ...|++++||.++..... ...-..|+..|+++|.++.+
T Consensus 154 i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~-------~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 154 VRELLSKYDFPGDDTPIIRGSALKALEGDD-------DEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHhcCCCccCCcEEEeecccccCCCC-------cccccccHHHHHHHHHhcCC
Confidence 11222210 135789999988621100 00111267899999988654
No 68
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.88 E-value=6.7e-08 Score=80.07 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCC-CCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc-
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPM-GTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI- 89 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~-~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 89 (161)
.|...+ ...+..+|.+++|+|++++. ..+..+....+.....+|+++|+||+|+.+.. ...+........+..
T Consensus 92 ~f~~~~-~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~----~~~~~~~~i~~~l~~~ 166 (406)
T TIGR03680 92 TLMATM-LSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE----KALENYEEIKEFVKGT 166 (406)
T ss_pred HHHHHH-HHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH----HHHHHHHHHHhhhhhc
Confidence 355555 67778999999999999875 34443333333321246789999999998641 000111111122211
Q ss_pred -CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 -QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 -~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
....+++++||.++ .|+++|++.|.+.++
T Consensus 167 ~~~~~~ii~vSA~~g-----------------~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 167 VAENAPIIPVSALHN-----------------ANIDALLEAIEKFIP 196 (406)
T ss_pred ccCCCeEEEEECCCC-----------------CChHHHHHHHHHhCC
Confidence 02467899999999 899999999998765
No 69
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.88 E-value=1.1e-08 Score=73.28 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh-hc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY-NS 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 88 (161)
++.+|...++.+|++|+|+|++++... ....+...+... .++|+++|+||+|+.... .. ..+...... ..
T Consensus 56 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~----~~-~~i~~~~~~~~~ 130 (158)
T cd04151 56 IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL----SE-AEISEKLGLSEL 130 (158)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC----CH-HHHHHHhCcccc
Confidence 456667778999999999999875321 122333333321 368999999999986531 00 111111110 00
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
...+.+++++||+++ .|+++|.+.|.+
T Consensus 131 ~~~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~ 157 (158)
T cd04151 131 KDRTWSIFKTSAIKG-----------------EGLDEGMDWLVN 157 (158)
T ss_pred CCCcEEEEEeeccCC-----------------CCHHHHHHHHhc
Confidence 011346899999999 999999988753
No 70
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.87 E-value=1.6e-08 Score=83.37 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=60.5
Q ss_pred HHHhhhccEEEEEEeCCCC----CCCCcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 19 RSVVEAADVILEVVDARDP----MGTRCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~----~~~~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.++++++|++++|+|++.. .......+.+.+... .++|.++|+||+|+.+. +.+......+.+.
T Consensus 232 l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--------~el~~~l~~l~~~ 303 (390)
T PRK12298 232 LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--------EEAEERAKAIVEA 303 (390)
T ss_pred HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--------HHHHHHHHHHHHH
Confidence 4678999999999998722 111123333333321 25899999999999765 2222222222111
Q ss_pred --CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 --SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 --~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
...+++++||+++ .|+++|.+.|.++++.
T Consensus 304 ~~~~~~Vi~ISA~tg-----------------~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 304 LGWEGPVYLISAASG-----------------LGVKELCWDLMTFIEE 334 (390)
T ss_pred hCCCCCEEEEECCCC-----------------cCHHHHHHHHHHHhhh
Confidence 1136899999998 8999999999888764
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.87 E-value=1.6e-08 Score=72.98 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+..++...+..+|++|+|+|++++.+..+ ..+...+.+. .+.|+++|.||+|+.+. . ......... .
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~--------~-~~~~~~~~~-~ 130 (161)
T cd04124 61 RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--------V-TQKKFNFAE-K 130 (161)
T ss_pred hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh--------H-HHHHHHHHH-H
Confidence 345565678899999999999987644222 2333334331 36899999999998543 1 111111111 1
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|++++.+.+.+.+.
T Consensus 131 ~~~~~~~~Sa~~~-----------------~gv~~l~~~l~~~~~ 158 (161)
T cd04124 131 HNLPLYYVSAADG-----------------TNVVKLFQDAIKLAV 158 (161)
T ss_pred cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2467899999999 999999999887654
No 72
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.87 E-value=3.4e-08 Score=69.19 Aligned_cols=91 Identities=23% Similarity=0.155 Sum_probs=63.6
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh----hhhccCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI----PYNSIQSI 92 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~ 92 (161)
.+...+..+|++++|+|+..+.......+...... .+.|+++|+||+|+... .....+. ........
T Consensus 68 ~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~--------~~~~~~~~~~~~~~~~~~~ 138 (163)
T cd00880 68 LARRVLERADLILFVVDADLRADEEEEKLLELLRE-RGKPVLLVLNKIDLLPE--------EEEEELLELRLLILLLLLG 138 (163)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCCeEEEEEEccccCCh--------hhHHHHHHHHHhhcccccC
Confidence 33677889999999999998766544442333333 57999999999999876 2222221 11111135
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+++++||.++ .|+.+|++.|.+.
T Consensus 139 ~~~~~~sa~~~-----------------~~v~~l~~~l~~~ 162 (163)
T cd00880 139 LPVIAVSALTG-----------------EGIDELREALIEA 162 (163)
T ss_pred CceEEEeeecc-----------------CCHHHHHHHHHhh
Confidence 67899999998 8999999988654
No 73
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.87 E-value=1.3e-08 Score=72.80 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHh--hhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI--PYN 87 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~ 87 (161)
+..+|...+..+|++++|+|++++.. .....+.+.+... .+.|+++|+||+|+.... .. +.+.... ..+
T Consensus 57 ~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~-~~i~~~~~~~~~ 131 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL----TA-EEITRRFKLKKY 131 (160)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc----CH-HHHHHHcCCccc
Confidence 45566667899999999999987642 1122333333321 368999999999986430 00 1122111 111
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
......+++++||+++ .|++++++.|.+
T Consensus 132 ~~~~~~~~~~~Sa~~~-----------------~gv~~~~~~i~~ 159 (160)
T cd04156 132 CSDRDWYVQPCSAVTG-----------------EGLAEAFRKLAS 159 (160)
T ss_pred CCCCcEEEEecccccC-----------------CChHHHHHHHhc
Confidence 1111335788999999 999999988754
No 74
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.86 E-value=2.6e-08 Score=70.48 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=61.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
...+..+|++++|+|++.+....+..+... . .++|+++|+||+|+.+. ... .... ...+++.+
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~-~~~~vi~v~nK~D~~~~--------~~~----~~~~--~~~~~~~~ 137 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILEL--P-ADKPIIVVLNKSDLLPD--------SEL----LSLL--AGKPIIAI 137 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHHh--h-cCCCEEEEEEchhcCCc--------ccc----cccc--CCCceEEE
Confidence 467789999999999998766555444332 2 57999999999999876 211 1111 35678999
Q ss_pred eecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 99 SSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 99 Sa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
||.++ .|+++|.+.|.+.+
T Consensus 138 Sa~~~-----------------~~v~~l~~~l~~~~ 156 (157)
T cd04164 138 SAKTG-----------------EGLDELKEALLELA 156 (157)
T ss_pred ECCCC-----------------CCHHHHHHHHHHhh
Confidence 99998 89999999987754
No 75
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.85 E-value=2.7e-08 Score=84.03 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=60.4
Q ss_pred HHHhhhccEEEEEEeCCCCC------CCCc---HHHHHHHh---------CCCCCcEEEEeecCCCCCcccccccHHHHH
Q psy8220 19 RSVVEAADVILEVVDARDPM------GTRC---KVAEDLVV---------GTPGKKLVIVINKAGKPSTKIQSGSMAQIF 80 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~------~~~~---~~i~~~l~---------~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~ 80 (161)
++.++++|++|+|+|++... ...+ .++..+.. ...++|+|+|+||+|+.+.. +..
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-------el~ 303 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-------ELA 303 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-------HHH
Confidence 56778999999999997532 1111 12222221 11368999999999997541 111
Q ss_pred HHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 81 QTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+.....+.. .+.+++++||+++ .|+++|.+.|.+.+..
T Consensus 304 e~l~~~l~~-~g~~Vf~ISA~tg-----------------eGLdEL~~~L~ell~~ 341 (500)
T PRK12296 304 EFVRPELEA-RGWPVFEVSAASR-----------------EGLRELSFALAELVEE 341 (500)
T ss_pred HHHHHHHHH-cCCeEEEEECCCC-----------------CCHHHHHHHHHHHHHh
Confidence 112223321 3568999999999 9999999999877643
No 76
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.85 E-value=1.8e-08 Score=72.60 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=55.3
Q ss_pred hccEEEEEEeCCCCCCCC-c--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEe
Q psy8220 24 AADVILEVVDARDPMGTR-C--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFS 99 (161)
Q Consensus 24 ~aDviL~VvD~~~~~~~~-~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS 99 (161)
.+|++|+|+|+++..... + ..+.+.+... .+.|+++|+||+|+... ..... ...+......+++.+|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~--------~~~~~-~~~~~~~~~~~~~~~S 149 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF--------EDLSE-IEEEEELEGEEVLKIS 149 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch--------hhHHH-HHHhhhhccCceEEEE
Confidence 369999999998764311 1 2333444431 27899999999999765 21221 1111111246789999
Q ss_pred ecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 100 SRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
|+++ .|+++|.+.|.+.
T Consensus 150 a~~~-----------------~gi~~l~~~l~~~ 166 (168)
T cd01897 150 TLTE-----------------EGVDEVKNKACEL 166 (168)
T ss_pred eccc-----------------CCHHHHHHHHHHH
Confidence 9999 9999999988654
No 77
>PLN03127 Elongation factor Tu; Provisional
Probab=98.83 E-value=6.6e-08 Score=81.03 Aligned_cols=116 Identities=17% Similarity=0.052 Sum_probs=71.8
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcE-EEEeecCCCCCcccccccHHHHHH-H
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKL-VIVINKAGKPSTKIQSGSMAQIFQ-T 82 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~-ilVlNK~Dl~~~~~~~~~~~~~~~-~ 82 (161)
.|.|. .|+..+ ...+..+|++++|+|++.+...++.+...++.. .+.|. |+++||+|+++.+ +..+.+. .
T Consensus 131 tPGh~--~f~~~~-~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~-~gip~iIvviNKiDlv~~~----~~~~~i~~~ 202 (447)
T PLN03127 131 CPGHA--DYVKNM-ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ-VGVPSLVVFLNKVDVVDDE----ELLELVEME 202 (447)
T ss_pred CCCcc--chHHHH-HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH-cCCCeEEEEEEeeccCCHH----HHHHHHHHH
Confidence 46664 478888 567788999999999998887777777777765 67884 7889999998641 1111121 1
Q ss_pred Hhhhhcc----CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 83 WIPYNSI----QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 83 ~~~~~~~----~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+.+.. ....|++++||.+.....+.. ....++..|++.|.++++
T Consensus 203 i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~-------~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 203 LRELLSFYKFPGDEIPIIRGSALSALQGTNDE-------IGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHhCCCCCcceEEEeccceeecCCCcc-------cccchHHHHHHHHHHhCC
Confidence 1112210 013567888876431110000 011347889999988764
No 78
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.83 E-value=8.9e-08 Score=79.46 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCC-CCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc-
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPM-GTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI- 89 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~-~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 89 (161)
.|...+ ...+..+|.+++|+|++.+. ..+.......+.....+|+++|+||+|+.+.. ...+........+..
T Consensus 97 ~f~~~~-~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~----~~~~~~~~i~~~l~~~ 171 (411)
T PRK04000 97 TLMATM-LSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE----RALENYEQIKEFVKGT 171 (411)
T ss_pred HHHHHH-HHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch----hHHHHHHHHHHHhccc
Confidence 355565 67778899999999999875 34444444444331235789999999998651 000111112222221
Q ss_pred -CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 -QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 -~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
....+++++||+++ .|+++|++.|.+.++.
T Consensus 172 ~~~~~~ii~vSA~~g-----------------~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 172 VAENAPIIPVSALHK-----------------VNIDALIEAIEEEIPT 202 (411)
T ss_pred cCCCCeEEEEECCCC-----------------cCHHHHHHHHHHhCCC
Confidence 12467899999999 9999999999987653
No 79
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.83 E-value=1.5e-08 Score=72.92 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc-
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS- 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~- 88 (161)
+..++...+..+|++++|+|++++..-. ...+...+... .+.|+++|+||+|+.+.. .. +.+..+.....
T Consensus 63 ~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~----~~-~~~~~~~~~~~~ 137 (167)
T cd04160 63 LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL----SV-EEIKEVFQDKAE 137 (167)
T ss_pred hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC----CH-HHHHHHhccccc
Confidence 4555567789999999999998653211 11222222211 368999999999986541 11 12233332211
Q ss_pred --cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 89 --IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 89 --~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.....+++++||+++ .|+++++++|.+
T Consensus 138 ~~~~~~~~~~~~Sa~~g-----------------~gv~e~~~~l~~ 166 (167)
T cd04160 138 EIGRRDCLVLPVSALEG-----------------TGVREGIEWLVE 166 (167)
T ss_pred cccCCceEEEEeeCCCC-----------------cCHHHHHHHHhc
Confidence 012346899999999 999999988753
No 80
>PRK11058 GTPase HflX; Provisional
Probab=98.83 E-value=2.7e-08 Score=82.82 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=59.5
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcH-HHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc-
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCK-VAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS- 94 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~-~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 94 (161)
.+.+..||++|+|+|++++....+. .+.+.+... .++|+++|+||+|+.+.. . .... ... .+.+
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~----~--~~~~----~~~--~~~~~ 338 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF----E--PRID----RDE--ENKPI 338 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch----h--HHHH----HHh--cCCCc
Confidence 5778899999999999987543222 122223221 368999999999997541 0 1111 111 2334
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+||+++ .|+++|.+.|.+.+.
T Consensus 339 ~v~ISAktG-----------------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 339 RVWLSAQTG-----------------AGIPLLFQALTERLS 362 (426)
T ss_pred eEEEeCCCC-----------------CCHHHHHHHHHHHhh
Confidence 488999999 999999999988764
No 81
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.82 E-value=1.2e-07 Score=82.04 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
|..+. ..++..+|.+|+|+|++++...+.......+.. .+.|+++|+||+|+.... .......+.+.+. ...
T Consensus 87 F~~~v-~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~~lpiIvViNKiDl~~a~-----~~~v~~ei~~~lg-~~~ 158 (600)
T PRK05433 87 FSYEV-SRSLAACEGALLVVDASQGVEAQTLANVYLALE-NDLEIIPVLNKIDLPAAD-----PERVKQEIEDVIG-IDA 158 (600)
T ss_pred HHHHH-HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCccc-----HHHHHHHHHHHhC-CCc
Confidence 44444 788999999999999998866544433333333 478999999999986531 1111122222222 011
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..++++||+++ .|+++|++.|.+.++.
T Consensus 159 ~~vi~iSAktG-----------------~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 159 SDAVLVSAKTG-----------------IGIEEVLEAIVERIPP 185 (600)
T ss_pred ceEEEEecCCC-----------------CCHHHHHHHHHHhCcc
Confidence 24789999999 9999999999888764
No 82
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.82 E-value=2.1e-08 Score=73.05 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=60.3
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc-
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS- 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~- 88 (161)
+..+|...+..||++++|+|++++.. .....+.+.+... .+.|+++|.||+|+.... .. +.+..+...-.
T Consensus 66 ~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~i~~~~~~~~~ 140 (168)
T cd04149 66 IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM----KP-HEIQEKLGLTRI 140 (168)
T ss_pred HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC----CH-HHHHHHcCCCcc
Confidence 45666677899999999999987632 1112233333221 358999999999986420 00 22333322111
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHH
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLG 131 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~ 131 (161)
.....+++++||+++ .|++++++.|.
T Consensus 141 ~~~~~~~~~~SAk~g-----------------~gv~~~~~~l~ 166 (168)
T cd04149 141 RDRNWYVQPSCATSG-----------------DGLYEGLTWLS 166 (168)
T ss_pred CCCcEEEEEeeCCCC-----------------CChHHHHHHHh
Confidence 001235688999999 89999988874
No 83
>PRK12735 elongation factor Tu; Reviewed
Probab=98.82 E-value=7.1e-08 Score=79.67 Aligned_cols=120 Identities=13% Similarity=0.001 Sum_probs=72.5
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEE-EEeecCCCCCcccccccHHHHHHHH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLV-IVINKAGKPSTKIQSGSMAQIFQTW 83 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~i-lVlNK~Dl~~~~~~~~~~~~~~~~~ 83 (161)
.|.|. +|+..+ ...+..+|++++|+|+..++..+..+....+.. .+.|.+ +|+||+|+.+.+.....+...+..+
T Consensus 82 tPGh~--~f~~~~-~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 82 CPGHA--DYVKNM-ITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred CCCHH--HHHHHH-HhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 46663 577777 688899999999999998766665555555554 578866 5799999975410000011112222
Q ss_pred hhhhccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 84 IPYNSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 84 ~~~~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
...+... ...|++++||.++.... ..+.-..|+..|++.|.+.++
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~-------~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGD-------DDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCC-------CCCcccccHHHHHHHHHhcCC
Confidence 2222100 13678999998873211 001111378899999988764
No 84
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.82 E-value=5.9e-08 Score=83.74 Aligned_cols=109 Identities=17% Similarity=0.083 Sum_probs=69.6
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
|.|. .|...+ ...+..+|++++|+|+++++..+..+....+.. .+.| +++|+||+|+.+.. +.....+.+..+.
T Consensus 58 PGhe--~f~~~~-~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~~iIVVlNK~Dlv~~~-~~~~~~~ei~~~l 132 (581)
T TIGR00475 58 PGHE--KFISNA-IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIPHTIVVITKADRVNEE-EIKRTEMFMKQIL 132 (581)
T ss_pred CCHH--HHHHHH-HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEECCCCCCHH-HHHHHHHHHHHHH
Confidence 5543 345555 677889999999999998765444444444443 4677 99999999998651 0000001112222
Q ss_pred hhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 85 PYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 85 ~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+......|++++||.++ .|+++|.+.|.+.+..
T Consensus 133 ~~~~~~~~~~ii~vSA~tG-----------------~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 133 NSYIFLKNAKIFKTSAKTG-----------------QGIGELKKELKNLLES 167 (581)
T ss_pred HHhCCCCCCcEEEEeCCCC-----------------CCchhHHHHHHHHHHh
Confidence 1111001467999999999 8999999998877643
No 85
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.82 E-value=7.1e-08 Score=72.12 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=59.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
...+..+|++++|+|++++....+ ..+.+.+... .++|+++|+||+|+.+. .... .... ....++
T Consensus 115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~--------~~~~---~~~~-~~~~~~ 182 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD--------EELE---ERLE-AGRPDA 182 (204)
T ss_pred HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh--------HHHH---HHhh-cCCCce
Confidence 355778999999999998754433 2233334321 36899999999999775 2222 1112 134578
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+.+||+++ .|++++.+.|.+.
T Consensus 183 ~~~Sa~~~-----------------~gi~~l~~~L~~~ 203 (204)
T cd01878 183 VFISAKTG-----------------EGLDELLEAIEEL 203 (204)
T ss_pred EEEEcCCC-----------------CCHHHHHHHHHhh
Confidence 99999999 8999999888653
No 86
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.81 E-value=1.3e-07 Score=81.85 Aligned_cols=116 Identities=17% Similarity=0.107 Sum_probs=74.9
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|.|. .|..+. ...+..+|.+++|+|+..+...+...+...+.. .+.|+|+|+||+|+.... ..+......
T Consensus 71 TPGh~--DF~~ev-~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~-~~ip~IVviNKiD~~~a~-----~~~v~~ei~ 141 (594)
T TIGR01394 71 TPGHA--DFGGEV-ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE-LGLKPIVVINKIDRPSAR-----PDEVVDEVF 141 (594)
T ss_pred CCCHH--HHHHHH-HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH-CCCCEEEEEECCCCCCcC-----HHHHHHHHH
Confidence 35553 355555 788999999999999988766566666665555 688999999999986531 111122222
Q ss_pred hhhc------cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 85 PYNS------IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 85 ~~~~------~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+. +...+|+++.||+++.... .......|++.|++.|.++++.
T Consensus 142 ~l~~~~g~~~e~l~~pvl~~SA~~g~~~~-------~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 142 DLFAELGADDEQLDFPIVYASGRAGWASL-------DLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HHHHhhccccccccCcEEechhhcCcccc-------cCcccccCHHHHHHHHHHhCCC
Confidence 2221 1124688999999882110 0111235899999999988864
No 87
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.81 E-value=2.1e-08 Score=73.08 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc-
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS- 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~- 88 (161)
++.+|...+..+|++++|+|++++..- ....+...+... .+.|+++|.||+|+.... .. +.+..+.....
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----~~-~~~~~~~~~~~~ 145 (173)
T cd04154 71 LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL----SE-EEIREALELDKI 145 (173)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC----CH-HHHHHHhCcccc
Confidence 445566778999999999999876321 112233332221 468999999999996541 00 22233322210
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHH
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLG 131 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~ 131 (161)
.....+++.+||+++ .|++++.++|.
T Consensus 146 ~~~~~~~~~~Sa~~g-----------------~gi~~l~~~l~ 171 (173)
T cd04154 146 SSHHWRIQPCSAVTG-----------------EGLLQGIDWLV 171 (173)
T ss_pred CCCceEEEeccCCCC-----------------cCHHHHHHHHh
Confidence 012457899999999 89999988874
No 88
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.79 E-value=3.3e-08 Score=70.62 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN 87 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
++.+|...+..+|.+++|+|++++..-. ...+...+... .+.|+++|+||+|+.+.. .. ..+.......
T Consensus 58 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~----~~-~~~~~~l~~~ 132 (162)
T cd04157 58 YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL----TA-VKITQLLGLE 132 (162)
T ss_pred hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC----CH-HHHHHHhCCc
Confidence 4556667789999999999998764211 11222222210 368999999999997541 00 1111111110
Q ss_pred c-cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 88 S-IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 88 ~-~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
. .....+++.+||+++ .|++++.+.|.+
T Consensus 133 ~~~~~~~~~~~~Sa~~g-----------------~gv~~~~~~l~~ 161 (162)
T cd04157 133 NIKDKPWHIFASNALTG-----------------EGLDEGVQWLQA 161 (162)
T ss_pred cccCceEEEEEeeCCCC-----------------CchHHHHHHHhc
Confidence 0 001234678999999 999999998753
No 89
>PRK13768 GTPase; Provisional
Probab=98.79 E-value=5.2e-08 Score=75.90 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=60.3
Q ss_pred ccEEEEEEeCCCCCCCCcHHHHHHHh-----CCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh--------------
Q psy8220 25 ADVILEVVDARDPMGTRCKVAEDLVV-----GTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-------------- 85 (161)
Q Consensus 25 aDviL~VvD~~~~~~~~~~~i~~~l~-----~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-------------- 85 (161)
++++++|+|++.+....+.....++. . .++|+++|+||+|+.+.. +. +....+..
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~~~-~~----~~~~~~l~~~~~~~~~l~~~~~ 202 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLSEE-EL----ERILKWLEDPEYLLEELKLEKG 202 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcCch-hH----HHHHHHHhCHHHHHHHHhcccc
Confidence 89999999998765544443333332 2 579999999999998752 00 11111111
Q ss_pred -----------hhccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC
Q psy8220 86 -----------YNSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD 138 (161)
Q Consensus 86 -----------~~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~ 138 (161)
.+... ...+++++|+.++ .|+++|.+.|.++++..+
T Consensus 203 ~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~-----------------~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 203 LQGLLSLELLRALEETGLPVRVIPVSAKTG-----------------EGFDELYAAIQEVFCGGE 250 (253)
T ss_pred hHHHHHHHHHHHHHHHCCCCcEEEEECCCC-----------------cCHHHHHHHHHHHcCCCC
Confidence 01111 1246899999998 999999999999887543
No 90
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.79 E-value=5.8e-08 Score=70.01 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHh-hhhc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI-PYNS 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 88 (161)
.+.+|...++.||++++|+|++++.+ .....+.+.+... .+.|+++|.||+|+.+.. ...+....+. ..+.
T Consensus 57 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~ 132 (159)
T cd04150 57 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM----SAAEVTDKLGLHSLR 132 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC----CHHHHHHHhCccccC
Confidence 55666777899999999999987532 1112233333221 258999999999996431 0011112221 1111
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHH
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLG 131 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~ 131 (161)
.....++.+||+++ .|++++.++|.
T Consensus 133 -~~~~~~~~~Sak~g-----------------~gv~~~~~~l~ 157 (159)
T cd04150 133 -NRNWYIQATCATSG-----------------DGLYEGLDWLS 157 (159)
T ss_pred -CCCEEEEEeeCCCC-----------------CCHHHHHHHHh
Confidence 01233567899999 99999998874
No 91
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.79 E-value=2.4e-08 Score=74.13 Aligned_cols=101 Identities=9% Similarity=0.024 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..++...+..+|++++|+|++.+.+-. -..+...+.+. .+.|+++|.||+|+.... ... .+....+...
T Consensus 62 ~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~--~~~-~~~~~~l~~~--- 135 (191)
T cd04112 62 RFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER--VVK-REDGERLAKE--- 135 (191)
T ss_pred HHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc--ccC-HHHHHHHHHH---
Confidence 34555566788999999999998753211 12222333321 368999999999996431 000 0111222111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
.+.+.+.+||+++ .|+++|.+.|.+.+...
T Consensus 136 -~~~~~~e~Sa~~~-----------------~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 136 -YGVPFMETSAKTG-----------------LNVELAFTAVAKELKHR 165 (191)
T ss_pred -cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHHHHh
Confidence 3467899999999 99999999998877543
No 92
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.78 E-value=3.9e-08 Score=72.04 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc-
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS- 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~- 88 (161)
.+.+|...++.||++|+|+|++++.+ .....+...+... .+.|+++|.||+|+.... .. +.+........
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~i~~~~~~~~~ 144 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM----KA-AEITEKLGLHSI 144 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC----CH-HHHHHHhCcccc
Confidence 45566667899999999999987632 1122333333221 257999999999986431 00 11221111110
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
......++++||+++ .|++++.++|.+.+
T Consensus 145 ~~~~~~~~~~Sa~~g-----------------~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 RDRNWYIQPTCATSG-----------------DGLYEGLTWLSNNL 173 (175)
T ss_pred CCCcEEEEEeeCCCC-----------------CCHHHHHHHHHHHh
Confidence 001223557899999 99999999987654
No 93
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.78 E-value=3.7e-08 Score=71.17 Aligned_cols=98 Identities=9% Similarity=-0.005 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...++.+|.+++|+|.+++.+-. -..+.+.+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 63 ~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 135 (165)
T cd01865 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER--VVSS-ERGRQLADQ---- 135 (165)
T ss_pred HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc--ccCH-HHHHHHHHH----
Confidence 4556677889999999999997653211 12223333321 357899999999997541 0000 111222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|+++|.+.|.+.+.
T Consensus 136 ~~~~~~~~Sa~~~-----------------~gv~~l~~~l~~~~~ 163 (165)
T cd01865 136 LGFEFFEASAKEN-----------------INVKQVFERLVDIIC 163 (165)
T ss_pred cCCEEEEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 2467899999999 999999999877654
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.77 E-value=3.9e-08 Score=72.57 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhh--
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY-- 86 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~-- 86 (161)
.++.+|...+..||++++|+|++++..-. ...+.+.... ..++|+++|+||+|+.... .. +.+..+...
T Consensus 64 ~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~----~~-~~~~~~~~~~~ 138 (183)
T cd04152 64 KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL----SV-SEVEKLLALHE 138 (183)
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC----CH-HHHHHHhCccc
Confidence 35666666788999999999998753211 1111222111 0468999999999986420 00 112222221
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+......+++++||+++ .|+++|.+.|.+.+
T Consensus 139 ~~~~~~~~~~~~SA~~~-----------------~gi~~l~~~l~~~l 169 (183)
T cd04152 139 LSASTPWHVQPACAIIG-----------------EGLQEGLEKLYEMI 169 (183)
T ss_pred cCCCCceEEEEeecccC-----------------CCHHHHHHHHHHHH
Confidence 11001235788999999 99999999988665
No 95
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.77 E-value=4.3e-08 Score=70.33 Aligned_cols=96 Identities=17% Similarity=0.056 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
...++...++++|++++|+|.+++.+-. ...+.+.+... .+.|+++|.||+|+.+.. .... .....+... .
T Consensus 65 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~ 137 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTD-AQAQAFAQA----N 137 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc--CCCH-HHHHHHHHH----c
Confidence 3444567889999999999998653211 12222323221 358999999999996541 0000 111111111 2
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+.+.+.+||+++ .|++++++.|.+.
T Consensus 138 ~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~ 162 (164)
T cd04101 138 QLKFFKTSALRG-----------------VGYEEPFESLARA 162 (164)
T ss_pred CCeEEEEeCCCC-----------------CChHHHHHHHHHH
Confidence 467889999999 9999999988764
No 96
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.77 E-value=3.8e-08 Score=71.94 Aligned_cols=96 Identities=8% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh--hh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP--YN 87 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~ 87 (161)
....|...++.+|++++|+|++++... ....+.+.+... .+.|+++++||+|+.... .. +.+..... ..
T Consensus 72 ~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~----~~-~~i~~~l~~~~~ 146 (174)
T cd04153 72 LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM----TP-AEISESLGLTSI 146 (174)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC----CH-HHHHHHhCcccc
Confidence 445556778999999999999876321 112233333321 358999999999986431 00 11111111 11
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
. ....+++++||+++ .|++++.+.|.+
T Consensus 147 ~-~~~~~~~~~SA~~g-----------------~gi~e~~~~l~~ 173 (174)
T cd04153 147 R-DHTWHIQGCCALTG-----------------EGLPEGLDWIAS 173 (174)
T ss_pred c-CCceEEEecccCCC-----------------CCHHHHHHHHhc
Confidence 1 12346789999999 899999988753
No 97
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.76 E-value=1.4e-07 Score=77.91 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=69.8
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEE-EEeecCCCCCcccccccHHHHHHHH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLV-IVINKAGKPSTKIQSGSMAQIFQTW 83 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~i-lVlNK~Dl~~~~~~~~~~~~~~~~~ 83 (161)
.|.|. .|+..+ ...+..+|.+++|+|++.+...+..+...++.. .+.|.+ +|+||+|+.+.........+.+..+
T Consensus 82 tpGh~--~f~~~~-~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~-~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 82 CPGHA--DYVKNM-ITGAAQMDGAILVVSATDGPMPQTREHILLARQ-VGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred CCchH--HHHHHH-HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 36663 467777 677889999999999998776666666666654 567765 6899999986410000011112222
Q ss_pred hhhhcc-CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 84 IPYNSI-QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 84 ~~~~~~-~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
...+.. ....|++++||.++..... .-..++..|++.|.++.+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~---------~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDA---------EWEAKILELMDAVDEYIP 201 (394)
T ss_pred HHhcCCCccCccEEECccccccccCC---------chhHhHHHHHHHHHhcCC
Confidence 222210 0126789999988621110 001255678888776543
No 98
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.76 E-value=7.2e-08 Score=80.19 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=60.2
Q ss_pred HHHhhhccEEEEEEeCCCCCC----CCcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 19 RSVVEAADVILEVVDARDPMG----TRCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~----~~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+.++++|++++|+|++.... .....+.+.+... .++|.++|+||+|+.... +.+..+.+.+
T Consensus 231 Lrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~-------e~l~~l~~~l--- 300 (424)
T PRK12297 231 LRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE-------ENLEEFKEKL--- 300 (424)
T ss_pred HHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH-------HHHHHHHHHh---
Confidence 567789999999999975421 1112333333321 368999999999984331 2223333332
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+++++||+++ .|+++|.+.|.+.+..
T Consensus 301 -~~~i~~iSA~tg-----------------eGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 301 -GPKVFPISALTG-----------------QGLDELLYAVAELLEE 328 (424)
T ss_pred -CCcEEEEeCCCC-----------------CCHHHHHHHHHHHHHh
Confidence 256899999999 8999999999877643
No 99
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.76 E-value=7.1e-08 Score=80.88 Aligned_cols=83 Identities=22% Similarity=0.251 Sum_probs=61.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
++.+..||++++|+|++++....+..+... . .++|+++|+||+|+.+. .... . . ...+++.+
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~-~~~piiiV~NK~DL~~~--------~~~~----~-~--~~~~~i~i 350 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE--L-KDKPVIVVLNKADLTGE--------IDLE----E-E--NGKPVIRI 350 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh--c-CCCCcEEEEEhhhcccc--------chhh----h-c--cCCceEEE
Confidence 567899999999999988765443333222 2 47999999999999765 2111 1 1 24568999
Q ss_pred eecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 99 SSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 99 Sa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
||+++ .|+++|.+.|.+.+..
T Consensus 351 SAktg-----------------~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTG-----------------EGIDELREAIKELAFG 371 (449)
T ss_pred EeeCC-----------------CCHHHHHHHHHHHHhh
Confidence 99999 8999999999887653
No 100
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.73 E-value=4.5e-08 Score=69.95 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++++|+|+.++.+-.+ ..+...+... .+.|+++|+||+|+.... .... +.... +...
T Consensus 62 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~--~~~~-~~~~~----~~~~ 134 (161)
T cd01861 62 FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR--QVST-EEGEK----KAKE 134 (161)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC--ccCH-HHHHH----HHHH
Confidence 45555677899999999999987632111 2222223221 248999999999995431 0000 11111 1111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+.+.+||+++ .|+++|.+.|.+.
T Consensus 135 ~~~~~~~~Sa~~~-----------------~~v~~l~~~i~~~ 160 (161)
T cd01861 135 LNAMFIETSAKAG-----------------HNVKELFRKIASA 160 (161)
T ss_pred hCCEEEEEeCCCC-----------------CCHHHHHHHHHHh
Confidence 2467899999998 9999999998664
No 101
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.73 E-value=1.5e-07 Score=81.50 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
|..+. ...+..||.+|+|+|++++...+.......... .+.|+++|+||+|+.... .......+.+.+. ...
T Consensus 83 F~~~v-~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~~ipiIiViNKiDl~~~~-----~~~~~~el~~~lg-~~~ 154 (595)
T TIGR01393 83 FSYEV-SRSLAACEGALLLVDAAQGIEAQTLANVYLALE-NDLEIIPVINKIDLPSAD-----PERVKKEIEEVIG-LDA 154 (595)
T ss_pred HHHHH-HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-cCCCEEEEEECcCCCccC-----HHHHHHHHHHHhC-CCc
Confidence 44444 788999999999999998765544333222333 478999999999986431 0111223333332 011
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+++++||+++ .|+++|++.|.+.++.
T Consensus 155 ~~vi~vSAktG-----------------~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 155 SEAILASAKTG-----------------IGIEEILEAIVKRVPP 181 (595)
T ss_pred ceEEEeeccCC-----------------CCHHHHHHHHHHhCCC
Confidence 24789999999 9999999999888764
No 102
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.73 E-value=6.4e-08 Score=71.51 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+.+|...+..+|.+++|+|++++.. .....+.+.+... .+.|+++|+||+|+.... .. +.+.........
T Consensus 74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~----~~-~~i~~~l~l~~~ 148 (184)
T smart00178 74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA----SE-DELRYALGLTNT 148 (184)
T ss_pred HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC----CH-HHHHHHcCCCcc
Confidence 45566778899999999999987632 1122333333211 468999999999985320 00 223333221110
Q ss_pred C--------CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 Q--------SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~--------~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
. ....++++||+++ .|+++++++|.+.
T Consensus 149 ~~~~~~~~~~~~~i~~~Sa~~~-----------------~g~~~~~~wl~~~ 183 (184)
T smart00178 149 TGSKGKVGVRPLEVFMCSVVRR-----------------MGYGEGFKWLSQY 183 (184)
T ss_pred cccccccCCceeEEEEeecccC-----------------CChHHHHHHHHhh
Confidence 0 1223788999998 9999999998653
No 103
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.73 E-value=5.6e-08 Score=69.59 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=59.1
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
..++...+..+|.+++|+|++++.+-.. ..+...+.. ..+.|+++|.||+|+.... .... +....+...
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~--~~~~-~~~~~~~~~---- 136 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR--KVSR-EEGQELARK---- 136 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc--eecH-HHHHHHHHH----
Confidence 3344567789999999999987542111 111111211 0368999999999996541 0000 111222221
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+.+.+||+++ .|++++.+.|.+.
T Consensus 137 ~~~~~~~~Sa~~~-----------------~~i~~l~~~l~~~ 162 (164)
T cd04145 137 LKIPYIETSAKDR-----------------LNVDKAFHDLVRV 162 (164)
T ss_pred cCCcEEEeeCCCC-----------------CCHHHHHHHHHHh
Confidence 2467899999998 8999999888654
No 104
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.73 E-value=8.9e-08 Score=70.73 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
..+.+|...+..||.+++|+|++++..-. ...+...+... .+.|+++|.||+|+.... . .+...+.+.
T Consensus 73 ~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~----~----~~~~~~~l~ 144 (181)
T PLN00223 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----N----AAEITDKLG 144 (181)
T ss_pred HHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC----C----HHHHHHHhC
Confidence 45667777789999999999998764211 12233333221 368999999999986541 1 111112221
Q ss_pred cC----CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 89 IQ----SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 89 ~~----~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
-. .....+.+||+++ .|+.++.+.|.+.+.
T Consensus 145 l~~~~~~~~~~~~~Sa~~g-----------------~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 145 LHSLRQRHWYIQSTCATSG-----------------EGLYEGLDWLSNNIA 178 (181)
T ss_pred ccccCCCceEEEeccCCCC-----------------CCHHHHHHHHHHHHh
Confidence 00 1112446799999 999999999876654
No 105
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.72 E-value=5.8e-08 Score=70.20 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=56.8
Q ss_pred HHHhhhccEEEEEEeCCCCC-----CCCc--HHHHHHHhCC---------CCCcEEEEeecCCCCCcccccccHHHHHHH
Q psy8220 19 RSVVEAADVILEVVDARDPM-----GTRC--KVAEDLVVGT---------PGKKLVIVINKAGKPSTKIQSGSMAQIFQT 82 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~-----~~~~--~~i~~~l~~~---------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 82 (161)
...+..+|++++|+|++++. ...+ ..+...+... .++|+++|+||+|+... .....
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--------~~~~~ 140 (176)
T cd01881 69 LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--------EELEE 140 (176)
T ss_pred HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--------hHHHH
Confidence 45678899999999998763 1111 1122122110 26899999999999765 22233
Q ss_pred Hh-hhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 83 WI-PYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 83 ~~-~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
+. .........+++.+||.++ .|+++|.+.|..
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~~-----------------~gl~~l~~~l~~ 174 (176)
T cd01881 141 ELVRELALEEGAEVVPISAKTE-----------------EGLDELIRAIYE 174 (176)
T ss_pred HHHHHHhcCCCCCEEEEehhhh-----------------cCHHHHHHHHHh
Confidence 21 1111113456899999998 999999988754
No 106
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.72 E-value=6.2e-08 Score=70.60 Aligned_cols=95 Identities=16% Similarity=0.057 Sum_probs=57.4
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
++...+++||++|+|+|++++.+-.. ..+.+.+....+.|+++|.||+|+.+..... . .....+.+.+. ..+.
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~--~-~~~~~~~~~~~---~~~~ 143 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRY--E-VQPDEFCRKLG---LPPP 143 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccccc--c-cCHHHHHHHcC---CCCC
Confidence 33445689999999999987632111 1222323221368999999999996541000 0 01122222221 1135
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+.+||+++ .|+++|.+.|.+.+
T Consensus 144 ~~~Sa~~~-----------------~~v~~lf~~l~~~~ 165 (169)
T cd01892 144 LHFSSKLG-----------------DSSNELFTKLATAA 165 (169)
T ss_pred EEEEeccC-----------------ccHHHHHHHHHHHh
Confidence 88999999 89999999887654
No 107
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.72 E-value=5.8e-08 Score=70.86 Aligned_cols=98 Identities=11% Similarity=-0.028 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
.++.++...+..+|++++|.|++++.+-.+ ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--~v~~-~~~~~~~~~-- 149 (180)
T cd04127 75 RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR--QVSE-EQAKALADK-- 149 (180)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC--ccCH-HHHHHHHHH--
Confidence 355666778899999999999987543211 1222223221 357899999999997531 0010 122333332
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+.+.+||+++ .|++++.+.|.+.+
T Consensus 150 --~~~~~~e~Sak~~-----------------~~v~~l~~~l~~~~ 176 (180)
T cd04127 150 --YGIPYFETSAATG-----------------TNVEKAVERLLDLV 176 (180)
T ss_pred --cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHH
Confidence 2467899999999 89999999987644
No 108
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.72 E-value=1.6e-07 Score=67.73 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..++...+..+|++++|+|++++.+-. ...+...+... .+.|+++|.||+|+.... .... +....+.+.+.
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~-~~~~~~~~~~~- 139 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR--EVLF-EEACTLAEKNG- 139 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc--ccCH-HHHHHHHHHcC-
Confidence 34555567788999999999998764321 12333333221 368999999999997541 0000 11122222221
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
..+.+.+||+++ .|++++.+.+.+.
T Consensus 140 --~~~~~e~Sa~~~-----------------~~v~~~~~~l~~~ 164 (165)
T cd01864 140 --MLAVLETSAKES-----------------QNVEEAFLLMATE 164 (165)
T ss_pred --CcEEEEEECCCC-----------------CCHHHHHHHHHHh
Confidence 235789999998 8999999887653
No 109
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.71 E-value=5.3e-08 Score=69.29 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...+..+|.+++|+|..+..+-.+ ..+...+.. ..+.|+++|.||+|+.+.. .. ......+...
T Consensus 62 ~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~---~~-~~~~~~~~~~--- 134 (162)
T cd04138 62 YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART---VS-SRQGQDLAKS--- 134 (162)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce---ec-HHHHHHHHHH---
Confidence 55565667889999999999876432111 111112211 1368999999999997541 00 0112222222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+.+.+||+++ .|++++.+.|.+.
T Consensus 135 -~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~ 160 (162)
T cd04138 135 -YGIPYIETSAKTR-----------------QGVEEAFYTLVRE 160 (162)
T ss_pred -hCCeEEEecCCCC-----------------CCHHHHHHHHHHH
Confidence 2457899999999 8999999888653
No 110
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.71 E-value=1.7e-07 Score=67.62 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHH-HhCC-----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDL-VVGT-----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~-l~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
+..++...++.+|.+|+|+|+.++.+-.. ..+... +... .+.|+++|+||+|+..+. ... .+....+.+.
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~-~~~~~~~~~~ 138 (172)
T cd01862 62 FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR--QVS-TKKAQQWCQS 138 (172)
T ss_pred HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccc--ccC-HHHHHHHHHH
Confidence 45566778899999999999987643111 112111 1110 268999999999997421 000 0222333332
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
. ...+++.+||+++ .|++++++.|.+.+-
T Consensus 139 ~---~~~~~~~~Sa~~~-----------------~gv~~l~~~i~~~~~ 167 (172)
T cd01862 139 N---GNIPYFETSAKEA-----------------INVEQAFETIARKAL 167 (172)
T ss_pred c---CCceEEEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 2 2357899999999 999999999887654
No 111
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.70 E-value=6.4e-08 Score=69.10 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh-c
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN-S 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~-~ 88 (161)
+...|...+..+|++++|+|++.+..-. ...+....... .+.|+++|.||+|+.... .. +.+..+.... .
T Consensus 56 ~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----~~-~~~~~~~~~~~~ 130 (158)
T cd00878 56 IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL----SV-SELIEKLGLEKI 130 (158)
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc----CH-HHHHHhhChhhc
Confidence 3455667889999999999998763211 11222222211 478999999999987641 11 1222222211 0
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.....+++.+||+++ .|++++.+.|..
T Consensus 131 ~~~~~~~~~~Sa~~~-----------------~gv~~~~~~l~~ 157 (158)
T cd00878 131 LGRRWHIQPCSAVTG-----------------DGLDEGLDWLLQ 157 (158)
T ss_pred cCCcEEEEEeeCCCC-----------------CCHHHHHHHHhh
Confidence 012346889999998 899999888754
No 112
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.69 E-value=7.1e-08 Score=70.12 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+.+|...+..+|.+++|+|++++.. .....+...+... .+.|+++|.||+|+.... .. +.+..+......
T Consensus 56 ~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~~~~~~~~~~~ 130 (169)
T cd04158 56 LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL----SV-EEMTELLSLHKL 130 (169)
T ss_pred cchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC----CH-HHHHHHhCCccc
Confidence 34455677899999999999987632 1222333333221 247999999999986431 01 222333222110
Q ss_pred --CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 --QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 --~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.....++.+||+++ .|++++.+.|.+.+..
T Consensus 131 ~~~~~~~~~~~Sa~~g-----------------~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 131 CCGRSWYIQGCDARSG-----------------MGLYEGLDWLSRQLVA 162 (169)
T ss_pred cCCCcEEEEeCcCCCC-----------------CCHHHHHHHHHHHHhh
Confidence 01124567799999 8999999999776543
No 113
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.69 E-value=1.4e-07 Score=71.79 Aligned_cols=92 Identities=20% Similarity=0.158 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCC-------CCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPM-------GTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~-------~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|+.+. ...+..+|++++|+|+.++. ..+.............+|+++|+||+|+.+.......+........
T Consensus 89 ~~~~~~-~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~ 167 (219)
T cd01883 89 DFVPNM-ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELS 167 (219)
T ss_pred HHHHHH-HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHH
Confidence 356666 67888999999999998742 2222232233322123789999999999732000001111111111
Q ss_pred hhhccC----CCCceeEEeecCCC
Q psy8220 85 PYNSIQ----SIYSSPRFSSRSQK 104 (161)
Q Consensus 85 ~~~~~~----~~~~~i~iSa~~~~ 104 (161)
..+... ...+++++||.++.
T Consensus 168 ~~l~~~~~~~~~~~ii~iSA~tg~ 191 (219)
T cd01883 168 PFLKKVGYNPKDVPFIPISGLTGD 191 (219)
T ss_pred HHHHHcCCCcCCceEEEeecCcCC
Confidence 122211 13568999999983
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.68 E-value=1.5e-07 Score=68.04 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=60.4
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
+...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+... .....+.+......+. ...+
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~--~~~~ 140 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS-QAGLEEEMLPIMNEFR--EIET 140 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc-hhHHHHHHHHHHHHHh--cccE
Confidence 3566789999999999987654222 1233334321 4689999999999976520 0000011111112222 1136
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
++.+||+++ .|+++|.+.+.+.+
T Consensus 141 ~~e~Sa~~~-----------------~~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTL-----------------INVSEVFYYAQKAV 163 (166)
T ss_pred EEEeccccc-----------------cCHHHHHHHHHHHh
Confidence 789999998 99999999887764
No 115
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.68 E-value=8.5e-08 Score=69.09 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..++...+..+|.+++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.... .... +....+...
T Consensus 63 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~-~~~~~~~~~--- 136 (166)
T cd01869 63 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR--VVDY-SEAQEFADE--- 136 (166)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc--CCCH-HHHHHHHHH---
Confidence 355565677889999999999987532111 1122222211 358999999999986541 0010 112222222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+.+.+||+++ .|++++.+.|.+.+
T Consensus 137 -~~~~~~~~Sa~~~-----------------~~v~~~~~~i~~~~ 163 (166)
T cd01869 137 -LGIPFLETSAKNA-----------------TNVEQAFMTMAREI 163 (166)
T ss_pred -cCCeEEEEECCCC-----------------cCHHHHHHHHHHHH
Confidence 3567899999998 89999999887654
No 116
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.68 E-value=5.8e-08 Score=69.46 Aligned_cols=96 Identities=10% Similarity=-0.003 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...+..+|.+++|+|..++.+-.+ ..+.+.+... .+.|+++|.||+|+.+.. .... +....+.+.
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~--- 135 (163)
T cd04136 62 FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER--VVSR-EEGQALARQ--- 135 (163)
T ss_pred cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--eecH-HHHHHHHHH---
Confidence 44555556789999999999987543211 1222223221 368999999999996531 0010 111112221
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+++.+||+++ .|++++.+.|.+.
T Consensus 136 -~~~~~~~~Sa~~~-----------------~~v~~l~~~l~~~ 161 (163)
T cd04136 136 -WGCPFYETSAKSK-----------------INVDEVFADLVRQ 161 (163)
T ss_pred -cCCeEEEecCCCC-----------------CCHHHHHHHHHHh
Confidence 2467899999999 8999999888653
No 117
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.67 E-value=1.6e-07 Score=69.35 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh--h
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP--Y 86 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~ 86 (161)
.++.+|...+..||++|+|+|++++.+ .....+.+.+... .+.|+++|.||.|+.... .. +.+..... .
T Consensus 73 ~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~i~~~l~~~~ 147 (182)
T PTZ00133 73 KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM----ST-TEVTEKLGLHS 147 (182)
T ss_pred hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC----CH-HHHHHHhCCCc
Confidence 466677778899999999999986532 1122333333321 358999999999986431 00 11111111 1
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+. ....+++.+||+++ .|++++.+.|.+.+.
T Consensus 148 ~~-~~~~~~~~~Sa~tg-----------------~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 VR-QRNWYIQGCCATTA-----------------QGLYEGLDWLSANIK 178 (182)
T ss_pred cc-CCcEEEEeeeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 11 01123456799999 999999999987654
No 118
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.67 E-value=7.2e-08 Score=69.19 Aligned_cols=97 Identities=14% Similarity=0.041 Sum_probs=60.6
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
..++...+..+|.+++|+|+.++.+-.. ..+...+... .+.|+++|.||+|+.+.. ... .+....+...
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~--~~~-~~~~~~~~~~---- 134 (164)
T smart00173 62 SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER--VVS-TEEGKELARQ---- 134 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--eEc-HHHHHHHHHH----
Confidence 3444556789999999999987533111 1111222111 368999999999997531 000 0111222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|+++|.+.|.+.+.
T Consensus 135 ~~~~~~~~Sa~~~-----------------~~i~~l~~~l~~~~~ 162 (164)
T smart00173 135 WGCPFLETSAKER-----------------VNVDEAFYDLVREIR 162 (164)
T ss_pred cCCEEEEeecCCC-----------------CCHHHHHHHHHHHHh
Confidence 2467899999998 899999999877654
No 119
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.67 E-value=1.1e-07 Score=68.88 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..++...++.+|++|+|+|++++.+-.+ ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~-~~~~~~~~~--- 138 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR--EVSY-EEGEAFAKE--- 138 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc--CCCH-HHHHHHHHH---
Confidence 455555678899999999999986533211 1222222221 368999999999997431 0010 111111111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||.++ .|++++.+.+.+.+.
T Consensus 139 -~~~~~~e~Sa~~~-----------------~~i~~~~~~~~~~~~ 166 (168)
T cd01866 139 -HGLIFMETSAKTA-----------------SNVEEAFINTAKEIY 166 (168)
T ss_pred -cCCEEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 3567889999998 899999888876553
No 120
>PLN03126 Elongation factor Tu; Provisional
Probab=98.67 E-value=3.7e-07 Score=77.10 Aligned_cols=120 Identities=16% Similarity=0.022 Sum_probs=70.7
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHH-HH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQ-TW 83 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~-~~ 83 (161)
|.|. .|+.++ ...+..+|++++|+|+..+...+..+....+.. .+.| +|+++||+|+.+.+ +..+.+. ..
T Consensus 152 PGh~--~f~~~~-~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~gi~~iIvvvNK~Dl~~~~----~~~~~i~~~i 223 (478)
T PLN03126 152 PGHA--DYVKNM-ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VGVPNMVVFLNKQDQVDDE----ELLELVELEV 223 (478)
T ss_pred CCHH--HHHHHH-HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEecccccCHH----HHHHHHHHHH
Confidence 5554 367777 688899999999999998877666666665554 5777 67889999998641 1111111 12
Q ss_pred hhhhcc----CCCCceeEEeecCCCCcchhhhhhhhccccc--cCHHHHHHHHHhHh
Q psy8220 84 IPYNSI----QSIYSSPRFSSRSQKDAQTERDLKAINVSSC--VGAELLMLLLGNYT 134 (161)
Q Consensus 84 ~~~~~~----~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~--~g~~~L~~~l~~~~ 134 (161)
...+.. ....|++++||.++.......... ...... .++..|++.|.++.
T Consensus 224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~-~~g~~~wy~~i~~Ll~~l~~~~ 279 (478)
T PLN03126 224 RELLSSYEFPGDDIPIISGSALLALEALMENPNI-KRGDNKWVDKIYELMDAVDSYI 279 (478)
T ss_pred HHHHHhcCCCcCcceEEEEEcccccccccccccc-ccCCCchhhhHHHHHHHHHHhC
Confidence 222221 024578999998872211000000 000000 14678888888764
No 121
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.67 E-value=2.3e-07 Score=76.85 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.9
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|.|. .|...+ ...+..+|++|+|+|+..++..+..+....+.....+++++|+||+|+.+.. ...+.+......
T Consensus 87 tPGh~--~f~~~~-~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~--~~~~~~i~~~~~ 161 (406)
T TIGR02034 87 TPGHE--QYTRNM-ATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD--EEVFENIKKDYL 161 (406)
T ss_pred CCCHH--HHHHHH-HHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch--HHHHHHHHHHHH
Confidence 35553 366677 5788999999999999988877766555444431235688899999997531 000111111111
Q ss_pred hhhcc--CCCCceeEEeecCC
Q psy8220 85 PYNSI--QSIYSSPRFSSRSQ 103 (161)
Q Consensus 85 ~~~~~--~~~~~~i~iSa~~~ 103 (161)
..+.. ....+++++||.++
T Consensus 162 ~~~~~~~~~~~~iipiSA~~g 182 (406)
T TIGR02034 162 AFAEQLGFRDVTFIPLSALKG 182 (406)
T ss_pred HHHHHcCCCCccEEEeecccC
Confidence 11111 11346899999998
No 122
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.66 E-value=2.9e-07 Score=69.03 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=59.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC-----CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG-----TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
...++.||++++|+|++++.+-.. ..+.+.+.. ..+.|+++|.||+|+.... ... .+....+... ..+
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~--~~~-~~~~~~~~~~---~~~ 148 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR--FAP-RHVLSVLVRK---SWK 148 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccc--ccc-HHHHHHHHHH---hcC
Confidence 567899999999999987643211 122222211 1468999999999996531 101 0112222221 125
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+||+++ .|+++|.+.+.+.+-
T Consensus 149 ~~~~e~Sak~g-----------------~~v~~lf~~i~~~~~ 174 (198)
T cd04142 149 CGYLECSAKYN-----------------WHILLLFKELLISAT 174 (198)
T ss_pred CcEEEecCCCC-----------------CCHHHHHHHHHHHhh
Confidence 67899999999 899999888876543
No 123
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.66 E-value=1.3e-07 Score=67.58 Aligned_cols=98 Identities=15% Similarity=0.006 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...++.+|++++|+|++++.+... ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~--~~~~-~~~~~~~~~---- 134 (164)
T smart00175 62 FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR--QVSR-EEAEAFAEE---- 134 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc--CCCH-HHHHHHHHH----
Confidence 34444677889999999999987644221 1122222211 368999999999987531 0011 122333222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||.++ .|++++.+.|.+.+.
T Consensus 135 ~~~~~~e~Sa~~~-----------------~~i~~l~~~i~~~~~ 162 (164)
T smart00175 135 HGLPFFETSAKTN-----------------TNVEEAFEELAREIL 162 (164)
T ss_pred cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHHh
Confidence 3567899999998 899999999987654
No 124
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.65 E-value=1e-07 Score=68.19 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+..++...+..+|.+++|.|+.++.+-.. ..+...+... .+.|+++|.||+|+.... .... +....+...
T Consensus 63 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~v~~-~~~~~~~~~---- 135 (162)
T cd04106 63 EFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA--VITN-EEAEALAKR---- 135 (162)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc--CCCH-HHHHHHHHH----
Confidence 355566678899999999999987642111 1222222211 378999999999997541 0010 112222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.+.+++.+||+++ .|+++|.+.|.+
T Consensus 136 ~~~~~~~~Sa~~~-----------------~~v~~l~~~l~~ 160 (162)
T cd04106 136 LQLPLFRTSVKDD-----------------FNVTELFEYLAE 160 (162)
T ss_pred cCCeEEEEECCCC-----------------CCHHHHHHHHHH
Confidence 2567899999998 899999988864
No 125
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.65 E-value=1.6e-07 Score=67.95 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...++.||++++|.|+.++.+-.. ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 65 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 137 (167)
T cd01867 65 FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR--VVSK-EEGEALADE---- 137 (167)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc--CCCH-HHHHHHHHH----
Confidence 44555677899999999999977543111 1222222221 368999999999997531 0011 111222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+.+.+||+++ .|++++.+.+.+.+
T Consensus 138 ~~~~~~~~Sa~~~-----------------~~v~~~~~~i~~~~ 164 (167)
T cd01867 138 YGIKFLETSAKAN-----------------INVEEAFFTLAKDI 164 (167)
T ss_pred cCCEEEEEeCCCC-----------------CCHHHHHHHHHHHH
Confidence 2467899999998 89999998887654
No 126
>PTZ00099 rab6; Provisional
Probab=98.65 E-value=1e-07 Score=70.28 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
...++...+..||++|+|+|.+++.+ .....+...+... .+.|+++|.||+||.... .... +....+...
T Consensus 42 ~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~--~v~~-~e~~~~~~~---- 114 (176)
T PTZ00099 42 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR--KVTY-EEGMQKAQE---- 114 (176)
T ss_pred hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc--CCCH-HHHHHHHHH----
Confidence 34455667899999999999987533 1112222322221 357889999999996421 0011 111222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+...+.+||+++ .|++++.+.|.+.++.
T Consensus 115 ~~~~~~e~SAk~g-----------------~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 115 YNTMFHETSAKAG-----------------HNIKVLFKKIAAKLPN 143 (176)
T ss_pred cCCEEEEEECCCC-----------------CCHHHHHHHHHHHHHh
Confidence 2345678999999 9999999999988865
No 127
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.65 E-value=1.5e-07 Score=66.28 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC-CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT-RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~-~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+...+...++++|++++|+|++++..- ....+...+... .+.|+++|+||+|+..+. ... .+....+...
T Consensus 62 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~-~~~~~~~~~~---- 134 (159)
T cd00154 62 FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR--QVS-TEEAQQFAKE---- 134 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc--ccc-HHHHHHHHHH----
Confidence 445567888999999999999875321 112233333321 258999999999996221 000 0112222221
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLG 131 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~ 131 (161)
...+++.+||.++ .|++++.+.|.
T Consensus 135 ~~~~~~~~sa~~~-----------------~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFFETSAKTG-----------------ENVEELFQSLA 158 (159)
T ss_pred cCCeEEEEecCCC-----------------CCHHHHHHHHh
Confidence 3567899999998 89999988874
No 128
>PRK04213 GTP-binding protein; Provisional
Probab=98.65 E-value=5.3e-07 Score=67.16 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=56.9
Q ss_pred HhhhccEEEEEEeCCCCCCC-----------CcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 21 VVEAADVILEVVDARDPMGT-----------RCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~-----------~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..+|++++|+|+...... .+..+...+.. .+.|+++|+||+|+.+.. .+....+.+.+..
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~p~iiv~NK~Dl~~~~------~~~~~~~~~~~~~ 159 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LGIPPIVAVNKMDKIKNR------DEVLDEIAERLGL 159 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-cCCCeEEEEECccccCcH------HHHHHHHHHHhcC
Confidence 45678999999998653211 12334455544 579999999999997541 0122333333320
Q ss_pred C-----CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 Q-----SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 ~-----~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
. .+.+++++||+++ |+++|.+.|.+.++.
T Consensus 160 ~~~~~~~~~~~~~~SA~~g------------------gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG------------------GIEELKEAIRKRLHE 193 (201)
T ss_pred CccccccCCcEEEEecccC------------------CHHHHHHHHHHhhcC
Confidence 0 0125788998864 789999998876654
No 129
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.65 E-value=3.9e-07 Score=80.31 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=65.9
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhh---hccC-
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY---NSIQ- 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~- 90 (161)
..++...+..+|++|+|+|+.++...+..+....+.. .+.|+|+|+||+|+.... . +.+..+... +.+.
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~~iPiIVViNKiDl~~~~-----~-e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-ANVPIIVAINKIDKANAN-----T-ERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-cCceEEEEEECCCccccC-----H-HHHHHHHHHhccchHhh
Confidence 3444678899999999999988765555555555554 589999999999997541 1 111111111 1100
Q ss_pred -CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 91 -SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 91 -~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
...|++++||+++ .|+++|++.|..++
T Consensus 382 g~~vpvv~VSAktG-----------------~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQG-----------------TNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCC-----------------CCHHHHHHhhhhhh
Confidence 1257899999999 99999999987654
No 130
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.64 E-value=3.6e-07 Score=77.15 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=57.0
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|.|. .|...+ ...+..+|++|+|+|+..+...+..+...++....-+++|+|+||+|+.+.. ...+.+......
T Consensus 114 TPGh~--~f~~~~-~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~--~~~~~~i~~~l~ 188 (474)
T PRK05124 114 TPGHE--QYTRNM-ATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS--EEVFERIREDYL 188 (474)
T ss_pred CCCcH--HHHHHH-HHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch--hHHHHHHHHHHH
Confidence 46654 356666 5678999999999999988766554433333321236789999999997531 000111111111
Q ss_pred hhhcc---CCCCceeEEeecCCC
Q psy8220 85 PYNSI---QSIYSSPRFSSRSQK 104 (161)
Q Consensus 85 ~~~~~---~~~~~~i~iSa~~~~ 104 (161)
..+.. ....+++++||+++.
T Consensus 189 ~~~~~~~~~~~~~iipvSA~~g~ 211 (474)
T PRK05124 189 TFAEQLPGNLDIRFVPLSALEGD 211 (474)
T ss_pred HHHHhcCCCCCceEEEEEeecCC
Confidence 11111 124678999999983
No 131
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.64 E-value=5.9e-07 Score=67.16 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhh---hccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 12 VVVQEIERSVVE---AADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 12 ~~~~~~~~~~i~---~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
+.|.++..+-++ +-..+++++|++.++...|.++.+++.. .+.|+++|+||+|-++... ....+....+.+.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-~~i~~~vv~tK~DKi~~~~----~~k~l~~v~~~l~ 165 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-LGIPVIVVLTKADKLKKSE----RNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEccccCChhH----HHHHHHHHHHHhc
Confidence 345555444443 2346889999999999889999999987 7999999999999887520 0011122222222
Q ss_pred cCCCCc--eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 89 IQSIYS--SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 89 ~~~~~~--~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
...... ++.+|+.++ .|+++|...|.+.+..
T Consensus 166 ~~~~~~~~~~~~ss~~k-----------------~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 166 KPPPDDQWVVLFSSLKK-----------------KGIDELKAKILEWLKE 198 (200)
T ss_pred CCCCccceEEEEecccc-----------------cCHHHHHHHHHHHhhc
Confidence 101111 788898888 9999999999887653
No 132
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.64 E-value=1.3e-07 Score=71.59 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN 87 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
...++...+..||++|+|+|++++.+-.. ..+...+.+. .+.|+++|.||+|+.... ... .+....+...
T Consensus 63 ~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--~v~-~~~~~~~~~~- 138 (215)
T cd04109 63 GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--TVK-DDKHARFAQA- 138 (215)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc--ccC-HHHHHHHHHH-
Confidence 34455567889999999999987643211 1222333221 135789999999997431 000 0112222222
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|++++.+.|.+.+.
T Consensus 139 ---~~~~~~~iSAktg-----------------~gv~~lf~~l~~~l~ 166 (215)
T cd04109 139 ---NGMESCLVSAKTG-----------------DRVNLLFQQLAAELL 166 (215)
T ss_pred ---cCCEEEEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 2457889999999 899999999887654
No 133
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.64 E-value=2e-07 Score=70.30 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCC-CcEEEEeecCCCCCcccc-cccHHHHHHHHhhhhccC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTKIQ-SGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 90 (161)
|..++ ..++..||++|+|+|++.++...+.....++.. .+ +++|+|+||+|+...... ...+...+..+...+. .
T Consensus 90 ~~~~~-~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~-~ 166 (208)
T cd04166 90 YTRNM-VTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLG-I 166 (208)
T ss_pred HHHHH-HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcC-C
Confidence 45555 577899999999999998876555554444443 34 457889999998753100 0000011112222221 0
Q ss_pred CCCceeEEeecCCC
Q psy8220 91 SIYSSPRFSSRSQK 104 (161)
Q Consensus 91 ~~~~~i~iSa~~~~ 104 (161)
...+++++||.++.
T Consensus 167 ~~~~ii~iSA~~g~ 180 (208)
T cd04166 167 EDITFIPISALDGD 180 (208)
T ss_pred CCceEEEEeCCCCC
Confidence 12458999999983
No 134
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.64 E-value=1.4e-07 Score=67.74 Aligned_cols=97 Identities=12% Similarity=-0.058 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..++...++.+|.+++|+|++++.+-.+ ..+...+... .+.|+++|.||+|+.... .... +....+...
T Consensus 64 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~--~~~~-~~~~~~~~~--- 137 (165)
T cd01868 64 RYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPT-EEAKAFAEK--- 137 (165)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--cCCH-HHHHHHHHH---
Confidence 345555667889999999999986543211 1222222221 258999999999986531 0000 111221111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+.+.+||+++ .|+++|.+.|.+.
T Consensus 138 -~~~~~~~~Sa~~~-----------------~~v~~l~~~l~~~ 163 (165)
T cd01868 138 -NGLSFIETSALDG-----------------TNVEEAFKQLLTE 163 (165)
T ss_pred -cCCEEEEEECCCC-----------------CCHHHHHHHHHHH
Confidence 3567899999999 8999999988654
No 135
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.63 E-value=1.7e-07 Score=69.97 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=59.9
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
..++...+..||++++|+|+.++.+-.. ..+...+... .+.|+++|+||+|+.+.. +... . ....+.....
T Consensus 61 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-~~v~--~--~~~~~~~~~~ 135 (198)
T cd04147 61 PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE-RQVP--A--KDALSTVELD 135 (198)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc-cccc--H--HHHHHHHHhh
Confidence 3344457789999999999987532111 1111112111 368999999999997531 0000 0 1111111101
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
...+++.+||+++ .|+++|.+.|.+.+.
T Consensus 136 ~~~~~~~~Sa~~g-----------------~gv~~l~~~l~~~~~ 163 (198)
T cd04147 136 WNCGFVETSAKDN-----------------ENVLEVFKELLRQAN 163 (198)
T ss_pred cCCcEEEecCCCC-----------------CCHHHHHHHHHHHhh
Confidence 2356789999999 999999999887653
No 136
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.63 E-value=4e-07 Score=67.27 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=63.0
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEee
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSS 100 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 100 (161)
..+.++++++|+|+..+....+..+.+++.. .+.|+++++||+|+.+.. ............+.. ...+++++||
T Consensus 103 ~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~~~~iiv~nK~Dl~~~~----~~~~~~~~i~~~l~~-~~~~~~~~Sa 176 (196)
T PRK00454 103 TRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YGIPVLIVLTKADKLKKG----ERKKQLKKVRKALKF-GDDEVILFSS 176 (196)
T ss_pred hCccceEEEEEEecCCCCCHHHHHHHHHHHH-cCCcEEEEEECcccCCHH----HHHHHHHHHHHHHHh-cCCceEEEEc
Confidence 3345578999999988766555555666654 578999999999997651 000111112223321 1457889999
Q ss_pred cCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 101 RSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+++ .|++++.+.|.+++.+
T Consensus 177 ~~~-----------------~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 177 LKK-----------------QGIDELRAAIAKWLAE 195 (196)
T ss_pred CCC-----------------CCHHHHHHHHHHHhcC
Confidence 998 8999999999887753
No 137
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.63 E-value=1.4e-07 Score=69.80 Aligned_cols=103 Identities=10% Similarity=-0.070 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..||++++|+|.+++.+-.+ ..+.+.+... ...| |+|.||+|+......... .........+...
T Consensus 62 ~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~--~~~~~~~~~~a~~ 138 (182)
T cd04128 62 FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQ--EEITKQARKYAKA 138 (182)
T ss_pred HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhh--hhhHHHHHHHHHH
Confidence 45555667899999999999987643222 1222333221 2345 789999999632000000 0011111112111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 139 ~~~~~~e~SAk~g-----------------~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 139 MKAPLIFCSTSHS-----------------INVQKIFKIVLAKAFD 167 (182)
T ss_pred cCCEEEEEeCCCC-----------------CCHHHHHHHHHHHHHh
Confidence 2467899999999 9999999998876643
No 138
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.63 E-value=1.7e-07 Score=67.51 Aligned_cols=96 Identities=16% Similarity=0.003 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+...+...+..+|++++|+|++++.+.. -..+...+... .+.|.++|.||+|+.+.. +........+...
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~-------~i~~~~~~~~~~~ 141 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR-------EVSQQRAEEFSDA 141 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-------ccCHHHHHHHHHH
Confidence 4444467889999999999987653211 11222222211 368899999999987541 1001111122211
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
...+.+.+||+++ .|++++.+.|.+.
T Consensus 142 ~~~~~~~~Sa~~~-----------------~gv~~l~~~i~~~ 167 (169)
T cd04114 142 QDMYYLETSAKES-----------------DNVEKLFLDLACR 167 (169)
T ss_pred cCCeEEEeeCCCC-----------------CCHHHHHHHHHHH
Confidence 2456889999998 8999999988654
No 139
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.63 E-value=1.8e-07 Score=66.91 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=61.1
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC-------CCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT-------PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~-------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
...++...+..+|++|+|+|++++.+-. ...+...+... .+.|+++|.||+|+.++. .... +....|..
T Consensus 62 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~ 138 (168)
T cd04119 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR--AVSE-DEGRLWAE 138 (168)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc--ccCH-HHHHHHHH
Confidence 4455566789999999999998763211 11222222210 257999999999997431 0000 11222322
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
. .+.+.+.+||+++ .|++++.+.|.+.+
T Consensus 139 ~----~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~l 166 (168)
T cd04119 139 S----KGFKYFETSACTG-----------------EGVNEMFQTLFSSI 166 (168)
T ss_pred H----cCCeEEEEECCCC-----------------CCHHHHHHHHHHHH
Confidence 2 2467899999999 99999999987543
No 140
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.63 E-value=1.8e-07 Score=68.68 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=51.7
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC-CCCceeEEeec
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ-SIYSSPRFSSR 101 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iSa~ 101 (161)
..+|.+++|+|++.+....+..+.+.+.. .++|+++|+||+|+.+.. ........+.+.+... ...+++++||+
T Consensus 99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-~~~pviiv~nK~D~~~~~----~~~~~~~~i~~~l~~~~~~~~v~~~Sa~ 173 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLKELDLEMLEWLRE-RGIPVLIVLTKADKLKKS----ELNKQLKKIKKALKKDADDPSVQLFSSL 173 (179)
T ss_pred hhhcEEEEEecCCCCCCHHHHHHHHHHHH-cCCCEEEEEECcccCCHH----HHHHHHHHHHHHHhhccCCCceEEEECC
Confidence 35689999999998877666666666655 579999999999997541 1111223333344311 12368999999
Q ss_pred CC
Q psy8220 102 SQ 103 (161)
Q Consensus 102 ~~ 103 (161)
++
T Consensus 174 ~g 175 (179)
T TIGR03598 174 KK 175 (179)
T ss_pred CC
Confidence 98
No 141
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.62 E-value=1.9e-07 Score=67.45 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.++.++...++.+|.+++|+|.+++.+-.. ..+...+... .+.|+++|.||+|+.... .... +....+...
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~--~~~~-~~~~~~~~~--- 136 (166)
T cd04122 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR--DVTY-EEAKQFADE--- 136 (166)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--CcCH-HHHHHHHHH---
Confidence 345555678899999999999987643111 1222222111 367999999999996541 0000 122233222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+.+.+||+++ .|++++.+.+...
T Consensus 137 -~~~~~~e~Sa~~~-----------------~~i~e~f~~l~~~ 162 (166)
T cd04122 137 -NGLLFLECSAKTG-----------------ENVEDAFLETAKK 162 (166)
T ss_pred -cCCEEEEEECCCC-----------------CCHHHHHHHHHHH
Confidence 2467899999999 8999987776543
No 142
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.62 E-value=3.1e-07 Score=69.22 Aligned_cols=100 Identities=14% Similarity=0.013 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
+.++.+|...+..||.+++|+|.+++.+-.. ..+.+.+... .+.|+++|.||+|+.... .... +....+...+
T Consensus 60 e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~--~v~~-~~~~~~a~~~- 135 (202)
T cd04120 60 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR--EISR-QQGEKFAQQI- 135 (202)
T ss_pred hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc--ccCH-HHHHHHHHhc-
Confidence 3466677778899999999999987643211 1223333321 368999999999996431 0000 1112222222
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+.+.+||+++ .|++++.+.|.+.+
T Consensus 136 --~~~~~~etSAktg-----------------~gV~e~F~~l~~~~ 162 (202)
T cd04120 136 --TGMRFCEASAKDN-----------------FNVDEIFLKLVDDI 162 (202)
T ss_pred --CCCEEEEecCCCC-----------------CCHHHHHHHHHHHH
Confidence 1456789999999 89999988887654
No 143
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.62 E-value=4.3e-07 Score=63.99 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHh-hhhc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI-PYNS 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 88 (161)
++.+|...+..+|++++|+|++++..-. ...+...+... .++|+++|+||+|+.+.. ........+. ....
T Consensus 57 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~ 132 (159)
T cd04159 57 FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL----SVDELIEQMNLKSIT 132 (159)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc----CHHHHHHHhCccccc
Confidence 5556678889999999999998653211 11222222211 368999999999987541 1101111110 1111
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
....+.+.+||+++ .|++++++.|.+
T Consensus 133 -~~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~ 158 (159)
T cd04159 133 -DREVSCYSISCKEK-----------------TNIDIVLDWLIK 158 (159)
T ss_pred -CCceEEEEEEeccC-----------------CChHHHHHHHhh
Confidence 12346789999998 999999998854
No 144
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.61 E-value=2.5e-07 Score=68.19 Aligned_cols=98 Identities=17% Similarity=0.141 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+.+|...+..+|.+++|+|++++..- ....+...+... .+.|+++|.||+|+.... .. +.+..+......
T Consensus 76 ~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~----~~-~~~~~~~~~~~~ 150 (190)
T cd00879 76 ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV----SE-EELRQALGLYGT 150 (190)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc----CH-HHHHHHhCcccc
Confidence 455667778999999999999865221 112333333211 368999999999986431 00 223333321110
Q ss_pred ----------C--CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 ----------Q--SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ----------~--~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
. ...+++.+||+++ .|++++.+.|.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~Sa~~~-----------------~gv~e~~~~l~~~ 189 (190)
T cd00879 151 TTGKGVSLKVSGIRPIEVFMCSVVKR-----------------QGYGEAFRWLSQY 189 (190)
T ss_pred cccccccccccCceeEEEEEeEecCC-----------------CChHHHHHHHHhh
Confidence 0 1234788999999 9999999998764
No 145
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.61 E-value=2.1e-07 Score=82.63 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=59.1
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeec
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSR 101 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~ 101 (161)
.+++|++++|+|+++.. .+..+...+.+ .+.|+++|+||+|+.++. ......+. +.+..+.|++++||.
T Consensus 83 ~~~aD~vI~VvDat~le--r~l~l~~ql~e-~giPvIvVlNK~Dl~~~~----~i~id~~~----L~~~LG~pVvpiSA~ 151 (772)
T PRK09554 83 SGDADLLINVVDASNLE--RNLYLTLQLLE-LGIPCIVALNMLDIAEKQ----NIRIDIDA----LSARLGCPVIPLVST 151 (772)
T ss_pred ccCCCEEEEEecCCcch--hhHHHHHHHHH-cCCCEEEEEEchhhhhcc----CcHHHHHH----HHHHhCCCEEEEEee
Confidence 45899999999998753 33444445555 689999999999987541 11111222 222246789999999
Q ss_pred CCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 102 SQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++ .|+++|.+.+.+..+
T Consensus 152 ~g-----------------~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 152 RG-----------------RGIEALKLAIDRHQA 168 (772)
T ss_pred cC-----------------CCHHHHHHHHHHhhh
Confidence 98 788888888776643
No 146
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.61 E-value=1.4e-07 Score=67.51 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...++.+|.+++|+|+.++.+-.. ..+...+... .+.|+++|.||+|+..... .. +....+..
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~---~~-~~~~~~~~---- 133 (161)
T cd01863 62 FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREV---TR-EEGLKFAR---- 133 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccccc---CH-HHHHHHHH----
Confidence 33444667889999999999987643211 1122222211 4689999999999974311 00 11112111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
..+.+.+.+||+++ .|++++.+.+.+.
T Consensus 134 ~~~~~~~~~Sa~~~-----------------~gi~~~~~~~~~~ 160 (161)
T cd01863 134 KHNMLFIETSAKTR-----------------DGVQQAFEELVEK 160 (161)
T ss_pred HcCCEEEEEecCCC-----------------CCHHHHHHHHHHh
Confidence 13567899999999 8999999887653
No 147
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.61 E-value=4e-07 Score=75.78 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=54.7
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCC--CCCCCcHHHHHHHhCCCC-CcEEEEeecCCCCCccc-ccccHHHHHH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARD--PMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTKI-QSGSMAQIFQ 81 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~--~~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~~~-~~~~~~~~~~ 81 (161)
|.|. .|+..+ ...+..||++|+|+|+++ +...+..+...++.. .+ .|+++|+||+|+.+... +.....+.+.
T Consensus 92 pG~~--~~~~~~-~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~ 167 (425)
T PRK12317 92 PGHR--DFVKNM-ITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAVNYDEKRYEEVKEEVS 167 (425)
T ss_pred CCcc--cchhhH-hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccccccHHHHHHHHHHHH
Confidence 5553 355666 466789999999999998 555555554444443 34 46899999999975310 0000111122
Q ss_pred HHhhhhcc-CCCCceeEEeecCC
Q psy8220 82 TWIPYNSI-QSIYSSPRFSSRSQ 103 (161)
Q Consensus 82 ~~~~~~~~-~~~~~~i~iSa~~~ 103 (161)
.+...+.. ....+++++||.++
T Consensus 168 ~~l~~~g~~~~~~~ii~iSA~~g 190 (425)
T PRK12317 168 KLLKMVGYKPDDIPFIPVSAFEG 190 (425)
T ss_pred HHHHhhCCCcCcceEEEeecccC
Confidence 22222110 01246899999998
No 148
>KOG1489|consensus
Probab=98.59 E-value=3.2e-07 Score=72.85 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=57.7
Q ss_pred HHHhhhccEEEEEEeCCCCCC---CCc-HHHHHHH---hC-CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 19 RSVVEAADVILEVVDARDPMG---TRC-KVAEDLV---VG-TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~---~~~-~~i~~~l---~~-~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+.++++++++||+|.+.+.. .+. ..+...+ .+ ...+|.++|.||+|+.+.+ ...+....+++.
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae------~~~l~~L~~~lq-- 340 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE------KNLLSSLAKRLQ-- 340 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH------HHHHHHHHHHcC--
Confidence 355679999999999987622 111 1111111 11 1479999999999996431 011244444443
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
...++++||+++ .|+.+|++.|++.
T Consensus 341 -~~~V~pvsA~~~-----------------egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 341 -NPHVVPVSAKSG-----------------EGLEELLNGLREL 365 (366)
T ss_pred -CCcEEEeeeccc-----------------cchHHHHHHHhhc
Confidence 334899999999 9999999988753
No 149
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.59 E-value=2.6e-07 Score=66.13 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCC-CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGT-RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~-~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+...+...+..+|.+++|+|+.++.+- ....+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 62 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~-~~~~~~~~~--- 135 (163)
T cd01860 62 RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR--QVST-EEAQEYADE--- 135 (163)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC--cCCH-HHHHHHHHH---
Confidence 3455555677889999999999866321 112233333221 357899999999987431 0010 111211111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+.+.+||+++ .|++++++.|.+.+
T Consensus 136 -~~~~~~~~Sa~~~-----------------~~v~~l~~~l~~~l 162 (163)
T cd01860 136 -NGLLFFETSAKTG-----------------ENVNELFTEIAKKL 162 (163)
T ss_pred -cCCEEEEEECCCC-----------------CCHHHHHHHHHHHh
Confidence 2467899999998 89999999987654
No 150
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.59 E-value=2.5e-07 Score=68.61 Aligned_cols=98 Identities=12% Similarity=0.009 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN 87 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
++.++...+..+|++|+|+|.+++.+-.. ..+...+... .+.|+++|.||+|+.... .... .....+...
T Consensus 60 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~--~v~~-~~~~~~~~~- 135 (190)
T cd04144 60 YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER--EVST-EEGAALARR- 135 (190)
T ss_pred hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC--ccCH-HHHHHHHHH-
Confidence 44555677889999999999977543211 2222223210 357999999999996531 0000 111222222
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|++++.+.+.+.+.
T Consensus 136 ---~~~~~~e~SAk~~-----------------~~v~~l~~~l~~~l~ 163 (190)
T cd04144 136 ---LGCEFIEASAKTN-----------------VNVERAFYTLVRALR 163 (190)
T ss_pred ---hCCEEEEecCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2457899999999 899999999987654
No 151
>PTZ00369 Ras-like protein; Provisional
Probab=98.58 E-value=1.3e-07 Score=70.11 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..+|...+..+|++++|+|++++.+-. ...+...+... .+.|+++|.||+|+.+.. .... .....+.+.
T Consensus 66 ~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--~i~~-~~~~~~~~~--- 139 (189)
T PTZ00369 66 YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER--QVST-GEGQELAKS--- 139 (189)
T ss_pred chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--ccCH-HHHHHHHHH---
Confidence 4455566788999999999998764311 11222222211 367999999999986431 0010 111222222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|++++++.|.+.+.
T Consensus 140 -~~~~~~e~Sak~~-----------------~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 140 -FGIPFLETSAKQR-----------------VNVDEAFYELVREIR 167 (189)
T ss_pred -hCCEEEEeeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2457899999999 899999888876553
No 152
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.58 E-value=2.7e-07 Score=69.02 Aligned_cols=98 Identities=13% Similarity=0.020 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.++.++...+..+|.+++|+|++++.+-.+ ..+.+.+... ...|+++|.||+|+.+.. .... +....+...
T Consensus 67 ~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~--~~~~-~~~~~~~~~---- 139 (199)
T cd04110 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK--VVET-EDAYKFAGQ---- 139 (199)
T ss_pred hHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc--ccCH-HHHHHHHHH----
Confidence 355566678889999999999987643111 1222223221 358999999999997541 0000 111111111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+++.+||+++ .|+++|.+.|.+.+
T Consensus 140 ~~~~~~e~Sa~~~-----------------~gi~~lf~~l~~~~ 166 (199)
T cd04110 140 MGISLFETSAKEN-----------------INVEEMFNCITELV 166 (199)
T ss_pred cCCEEEEEECCCC-----------------cCHHHHHHHHHHHH
Confidence 2467889999999 89999999987655
No 153
>PRK10218 GTP-binding protein; Provisional
Probab=98.58 E-value=6.1e-07 Score=77.75 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc----
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS---- 88 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~---- 88 (161)
|..+. ...+..+|.+|+|+|+.++...+...+...+.. .+.|.++++||+|+.... ..+.+......+.
T Consensus 81 f~~~v-~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~gip~IVviNKiD~~~a~-----~~~vl~ei~~l~~~l~~ 153 (607)
T PRK10218 81 FGGEV-ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YGLKPIVVINKVDRPGAR-----PDWVVDQVFDLFVNLDA 153 (607)
T ss_pred hHHHH-HHHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cCCCEEEEEECcCCCCCc-----hhHHHHHHHHHHhccCc
Confidence 34444 678899999999999998766666666665554 689999999999986541 1122222222221
Q ss_pred --cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 89 --IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 89 --~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
....+|+++.||.++.... .......|+..|++.|.+++|.
T Consensus 154 ~~~~~~~PVi~~SA~~G~~~~-------~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 154 TDEQLDFPIVYASALNGIAGL-------DHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cccccCCCEEEeEhhcCcccC-------CccccccchHHHHHHHHHhCCC
Confidence 1135789999999982110 0001123788999999988864
No 154
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.58 E-value=2.7e-07 Score=65.84 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...++.+|.+++|+|..++.+- ....+..+... ..+.|+++|+||+|+.+.. .... .....+...
T Consensus 61 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~--~~~~-~~~~~~~~~--- 134 (164)
T cd04139 61 YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR--QVSS-EEAANLARQ--- 134 (164)
T ss_pred hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc--ccCH-HHHHHHHHH---
Confidence 445556788899999999998765321 11222222221 1369999999999997621 0000 111122221
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+++.+||+++ .|+++|.+.|.+.+
T Consensus 135 -~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~ 161 (164)
T cd04139 135 -WGVPYVETSAKTR-----------------QNVEKAFYDLVREI 161 (164)
T ss_pred -hCCeEEEeeCCCC-----------------CCHHHHHHHHHHHH
Confidence 2467899999999 99999999987655
No 155
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.58 E-value=1.7e-07 Score=67.34 Aligned_cols=97 Identities=8% Similarity=-0.012 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...+..+|.+++|+|..++.+-.+ ..+...+.. ..+.|+++|.||+|+.+.. .... .....+.+.
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~--- 135 (164)
T cd04175 62 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER--VVGK-EQGQNLARQ--- 135 (164)
T ss_pred chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhcc--EEcH-HHHHHHHHH---
Confidence 34444557789999999999876532111 122222221 1468999999999997531 0000 111222222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+++.+||+++ .|++++...|.+.+
T Consensus 136 -~~~~~~~~Sa~~~-----------------~~v~~~~~~l~~~l 162 (164)
T cd04175 136 -WGCAFLETSAKAK-----------------INVNEIFYDLVRQI 162 (164)
T ss_pred -hCCEEEEeeCCCC-----------------CCHHHHHHHHHHHh
Confidence 2467899999999 99999999987644
No 156
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.57 E-value=3.6e-07 Score=67.20 Aligned_cols=101 Identities=12% Similarity=-0.018 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhCC-CCCcEEEEeecCCCCCcccccccH-HHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCK--VAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSM-AQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~-~~~~~~~~~~~~~ 89 (161)
+..++...++.||++++|+|.+++.+-.+. .+...+... .+.|+++|.||+|+.+........ .+....+...+
T Consensus 62 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-- 139 (187)
T cd04132 62 YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ-- 139 (187)
T ss_pred HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc--
Confidence 445555678899999999999876432211 122222211 368999999999986531000000 01122222222
Q ss_pred CCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+. +.+.+||+++ .|++++.+.+.+.+.
T Consensus 140 --~~~~~~e~Sa~~~-----------------~~v~~~f~~l~~~~~ 167 (187)
T cd04132 140 --GAFAYLECSAKTM-----------------ENVEEVFDTAIEEAL 167 (187)
T ss_pred --CCcEEEEccCCCC-----------------CCHHHHHHHHHHHHH
Confidence 33 6789999998 899999998877653
No 157
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.57 E-value=2.5e-07 Score=69.05 Aligned_cols=100 Identities=14% Similarity=-0.006 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+.++.++......||.+|+|.|.+++.+-.. ..+.+.+... .+.|+|+|.||.||.... ... .+....|.+.
T Consensus 66 ~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~--~v~-~~~~~~~a~~--- 139 (189)
T cd04121 66 GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR--QVA-TEQAQAYAER--- 139 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc--CCC-HHHHHHHHHH---
Confidence 3466676677799999999999988754221 2233333321 478999999999996431 001 1223333332
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|++++.+.|.+.+.
T Consensus 140 -~~~~~~e~SAk~g-----------------~~V~~~F~~l~~~i~ 167 (189)
T cd04121 140 -NGMTFFEVSPLCN-----------------FNITESFTELARIVL 167 (189)
T ss_pred -cCCEEEEecCCCC-----------------CCHHHHHHHHHHHHH
Confidence 3567899999999 999999998876543
No 158
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.57 E-value=2.8e-07 Score=65.51 Aligned_cols=96 Identities=20% Similarity=0.050 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|.+++|+|.+++..-.. ..+...+... .+.|+++|+||+|+.... .... +........
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~--~~~~-~~~~~~~~~---- 134 (162)
T cd04123 62 YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR--VVSK-SEAEEYAKS---- 134 (162)
T ss_pred HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--CCCH-HHHHHHHHH----
Confidence 44455556789999999999877642111 1122222221 268999999999987531 0000 111222111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+.+.+||+++ .|++++.+.|.+.
T Consensus 135 ~~~~~~~~s~~~~-----------------~gi~~~~~~l~~~ 160 (162)
T cd04123 135 VGAKHFETSAKTG-----------------KGIEELFLSLAKR 160 (162)
T ss_pred cCCEEEEEeCCCC-----------------CCHHHHHHHHHHH
Confidence 2566889999998 8999999998654
No 159
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.56 E-value=1.2e-06 Score=62.32 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=59.5
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc-cCCCCceeEEeec
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS-IQSIYSSPRFSSR 101 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iSa~ 101 (161)
+.++.+++|+|...+.......+.+++.. .+.|+++|+||+|+.+... ...........+. .....+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-~~~~vi~v~nK~D~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LGIPFLVVLTKADKLKKSE----LAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-cCCCEEEEEEchhcCChHH----HHHHHHHHHHHHHhccCCCceEEEecC
Confidence 45788999999987765555566666665 5789999999999975410 0000111111111 0124568899999
Q ss_pred CCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 102 SQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
++ .|++++.+.|.++
T Consensus 155 ~~-----------------~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KG-----------------QGIDELRALIEKW 169 (170)
T ss_pred CC-----------------CCHHHHHHHHHHh
Confidence 98 8999999998765
No 160
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.56 E-value=3.3e-07 Score=66.95 Aligned_cols=98 Identities=12% Similarity=-0.030 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
++.++...+..+|.+++|+|.+++.+-.. ..+...+.. ..+.|+++|.||+|+.... .... +....+.+.
T Consensus 63 ~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~--~v~~-~~~~~~a~~--- 136 (172)
T cd04141 63 FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR--QVTT-EEGRNLARE--- 136 (172)
T ss_pred hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC--ccCH-HHHHHHHHH---
Confidence 55566677889999999999987754222 122222222 1468999999999986431 0010 111222222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|++++.+.|...+.
T Consensus 137 -~~~~~~e~Sa~~~-----------------~~v~~~f~~l~~~~~ 164 (172)
T cd04141 137 -FNCPFFETSAALR-----------------HYIDDAFHGLVREIR 164 (172)
T ss_pred -hCCEEEEEecCCC-----------------CCHHHHHHHHHHHHH
Confidence 2567889999999 899999998876543
No 161
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.55 E-value=4.4e-07 Score=66.18 Aligned_cols=101 Identities=17% Similarity=0.034 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC-CcHHHHHHH-hCC-C-CCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT-RCKVAEDLV-VGT-P-GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~-~~~~i~~~l-~~~-~-~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...+..||++++|.|++++.+. ....+...+ ... . ..|+++|.||+|+.+.. +.....+....+...
T Consensus 62 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-~~~~~~~~~~~~~~~--- 137 (170)
T cd04108 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA-QYALMEQDAIKLAAE--- 137 (170)
T ss_pred HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc-cccccHHHHHHHHHH---
Confidence 455556678899999999999774221 112233222 221 1 35689999999986541 000000111222222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+.+.+||+++ .|+++|.+.|.+.+.+
T Consensus 138 -~~~~~~e~Sa~~g-----------------~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 138 -MQAEYWSVSALSG-----------------ENVREFFFRVAALTFE 166 (170)
T ss_pred -cCCeEEEEECCCC-----------------CCHHHHHHHHHHHHHH
Confidence 2456788999998 9999999998877643
No 162
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.55 E-value=1.3e-07 Score=67.91 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=58.6
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
..++...+..||.+++|.|..++.+-.+ ..+...+... .+.|+++|.||+|+.+.. .... .....+...
T Consensus 63 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 135 (163)
T cd04176 63 ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER--EVSS-AEGRALAEE---- 135 (163)
T ss_pred cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC--ccCH-HHHHHHHHH----
Confidence 3444556789999999999987642111 2222222221 368999999999986531 0010 111111111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+++++||+++ .|++++.+.|.+.
T Consensus 136 ~~~~~~~~Sa~~~-----------------~~v~~l~~~l~~~ 161 (163)
T cd04176 136 WGCPFMETSAKSK-----------------TMVNELFAEIVRQ 161 (163)
T ss_pred hCCEEEEecCCCC-----------------CCHHHHHHHHHHh
Confidence 2457889999998 8999998887653
No 163
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.55 E-value=1e-06 Score=76.91 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=57.0
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|.|. .|...+ ...+..+|++|+|+|+..+...++.+....+.....+++|+|+||+|+.+.. ...+.+......
T Consensus 111 tPG~~--~f~~~~-~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~--~~~~~~i~~~i~ 185 (632)
T PRK05506 111 TPGHE--QYTRNM-VTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD--QEVFDEIVADYR 185 (632)
T ss_pred CCChH--HHHHHH-HHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccch--hHHHHHHHHHHH
Confidence 36653 355555 5688999999999999988776665555444431236788999999997521 001111111111
Q ss_pred hhhcc--CCCCceeEEeecCC
Q psy8220 85 PYNSI--QSIYSSPRFSSRSQ 103 (161)
Q Consensus 85 ~~~~~--~~~~~~i~iSa~~~ 103 (161)
+.+.. ....+++++||.++
T Consensus 186 ~~~~~~~~~~~~iipiSA~~g 206 (632)
T PRK05506 186 AFAAKLGLHDVTFIPISALKG 206 (632)
T ss_pred HHHHHcCCCCccEEEEecccC
Confidence 11111 01346899999998
No 164
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.53 E-value=3.9e-07 Score=67.39 Aligned_cols=100 Identities=11% Similarity=-0.013 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHH-HHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMA-QIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++++|+|++++.+-.. ..+.+.+... .+.|+++|.||+|+.+......... .....+...
T Consensus 63 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~---- 138 (193)
T cd04118 63 YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE---- 138 (193)
T ss_pred hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH----
Confidence 34444456779999999999987632211 2233334331 3689999999999865310000100 111222211
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+++.+||+++ .|+++|.+.|.+.+
T Consensus 139 ~~~~~~~~Sa~~~-----------------~gv~~l~~~i~~~~ 165 (193)
T cd04118 139 IKAQHFETSSKTG-----------------QNVDELFQKVAEDF 165 (193)
T ss_pred cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHH
Confidence 2456789999999 89999999998765
No 165
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.53 E-value=2.7e-07 Score=79.79 Aligned_cols=85 Identities=16% Similarity=0.058 Sum_probs=57.0
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeec
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSR 101 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~ 101 (161)
.+.+|++++|+|+++.. .+..+...+.+ .++|+++|+||+|+.++. ..+ ...+ .+.+..+.|++++||+
T Consensus 70 ~~~aDvvI~VvDat~le--r~l~l~~ql~~-~~~PiIIVlNK~Dl~~~~--~i~--~d~~----~L~~~lg~pvv~tSA~ 138 (591)
T TIGR00437 70 NEKPDLVVNVVDASNLE--RNLYLTLQLLE-LGIPMILALNLVDEAEKK--GIR--IDEE----KLEERLGVPVVPTSAT 138 (591)
T ss_pred hcCCCEEEEEecCCcch--hhHHHHHHHHh-cCCCEEEEEehhHHHHhC--CCh--hhHH----HHHHHcCCCEEEEECC
Confidence 35799999999998642 22333333444 589999999999986531 000 1112 2222236789999999
Q ss_pred CCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 102 SQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
++ .|+++|.+.+.+.+
T Consensus 139 tg-----------------~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 139 EG-----------------RGIERLKDAIRKAI 154 (591)
T ss_pred CC-----------------CCHHHHHHHHHHHh
Confidence 99 89999998887653
No 166
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.53 E-value=3.4e-07 Score=66.34 Aligned_cols=100 Identities=12% Similarity=-0.006 Sum_probs=60.0
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccccccc--------H-HHHHHH
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGS--------M-AQIFQT 82 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~--------~-~~~~~~ 82 (161)
..++...++.+|++|+|.|.+++.+-.. ..+...+... .+.|+++|.||+|+.+....... . .+....
T Consensus 60 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (174)
T smart00174 60 DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEA 139 (174)
T ss_pred chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHH
Confidence 3444456789999999999987632211 1233333321 47999999999999753100000 0 000111
Q ss_pred HhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 83 WIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 83 ~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+...+ ...+.+.+||+++ .|+++|.+.+.+.+
T Consensus 140 ~~~~~---~~~~~~e~Sa~~~-----------------~~v~~lf~~l~~~~ 171 (174)
T smart00174 140 LAKRI---GAVKYLECSALTQ-----------------EGVREVFEEAIRAA 171 (174)
T ss_pred HHHHc---CCcEEEEecCCCC-----------------CCHHHHHHHHHHHh
Confidence 22221 1236789999999 99999999887654
No 167
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.52 E-value=1.6e-06 Score=72.71 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=56.7
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCC-------CCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMG-------TRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSM 76 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~-------~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~ 76 (161)
.|.|. .|..++ ...+..+|++++|+|+..+.. .+..+...++.. .+.| +|+++||+|.....+....+
T Consensus 92 tPGh~--~f~~~~-~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~~iiv~vNKmD~~~~~~~~~~~ 167 (446)
T PTZ00141 92 APGHR--DFIKNM-ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVKQMIVCINKMDDKTVNYSQERY 167 (446)
T ss_pred CCChH--HHHHHH-HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCCeEEEEEEccccccchhhHHHH
Confidence 36655 478888 688999999999999998752 334444444443 4666 57899999943210001112
Q ss_pred HHHHHHHhhhhccC----CCCceeEEeecCC
Q psy8220 77 AQIFQTWIPYNSIQ----SIYSSPRFSSRSQ 103 (161)
Q Consensus 77 ~~~~~~~~~~~~~~----~~~~~i~iSa~~~ 103 (161)
.+........+... ...|++++||.++
T Consensus 168 ~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g 198 (446)
T PTZ00141 168 DEIKKEVSAYLKKVGYNPEKVPFIPISGWQG 198 (446)
T ss_pred HHHHHHHHHHHHhcCCCcccceEEEeecccC
Confidence 12222222222210 1367899999998
No 168
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.52 E-value=3.2e-07 Score=66.51 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=60.3
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHH--hhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTW--IPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~--~~~~~~ 89 (161)
++.+|...+..||.+++|+|++++..- ....+.+++....+.|+++|.||+|+.... .. +.+... ...+..
T Consensus 57 ~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~i~~~~~~~~~~~ 131 (164)
T cd04162 57 LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR----SV-QEIHKELELEPIAR 131 (164)
T ss_pred hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC----CH-HHHHHHhCChhhcC
Confidence 456667789999999999999876421 112233333221479999999999986541 11 111111 122221
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLG 131 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~ 131 (161)
..+.+++..||++. -|+....|+.++.+.+.
T Consensus 132 ~~~~~~~~~Sa~~~-----------~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 132 GRRWILQGTSLDDD-----------GSPSRMEAVKDLLSQLI 162 (164)
T ss_pred CCceEEEEeeecCC-----------CChhHHHHHHHHHHHHh
Confidence 12455677888874 12333488888877764
No 169
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.52 E-value=9e-07 Score=76.48 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=41.4
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPS 68 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~ 68 (161)
..++......+|++++|+|++++...+..+...++.. .+.|+++|+||+|+.+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~-~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM-YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH-cCCCEEEEEECCCccc
Confidence 3444567789999999999998766666665666655 5899999999999974
No 170
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.51 E-value=5.1e-07 Score=66.61 Aligned_cols=98 Identities=18% Similarity=0.081 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...++.+|.+++|+|++++.+-.. ..+...+... ...|+++|.||+|+.+.. .... +....+...
T Consensus 62 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~--~v~~-~~~~~~~~~---- 134 (188)
T cd04125 62 FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK--VVDS-NIAKSFCDS---- 134 (188)
T ss_pred HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc--cCCH-HHHHHHHHH----
Confidence 44455678899999999999987632111 1122222221 357899999999987431 0000 111222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|++++.+.|.+.+.
T Consensus 135 ~~~~~~evSa~~~-----------------~~i~~~f~~l~~~~~ 162 (188)
T cd04125 135 LNIPFFETSAKQS-----------------INVEEAFILLVKLII 162 (188)
T ss_pred cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2457899999998 899999988876654
No 171
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.51 E-value=1.1e-06 Score=68.26 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=68.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhC----------C-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 19 RSVVEAADVILEVVDARDPMGTR-CKVAEDLVVG----------T-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~----------~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
...+..+|++|+|+|..++.+-. ...+.+.+.. . .+.|+|+|.||+|+.... .... +.+.. .
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~--~v~~-~ei~~---~ 139 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR--EVQR-DEVEQ---L 139 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc--ccCH-HHHHH---H
Confidence 34567899999999998753211 1122222211 0 368999999999997521 0011 11222 2
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC---CCCceEEEEE-eecCCCcc
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD---IKTSITVGVV-GECNIAGS 156 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~---~~~~~~v~vv-G~pNVGKS 156 (161)
+......+.+.+||+++ .|+++|.+.|.+.+.... .....++.++ |-|.-+||
T Consensus 140 ~~~~~~~~~~evSAktg-----------------~gI~elf~~L~~~~~~p~e~~~~~~~~~~~~~~~~~~~~~ 196 (247)
T cd04143 140 VGGDENCAYFEVSAKKN-----------------SNLDEMFRALFSLAKLPNEMSPSLHRKISVQYGDALHKKS 196 (247)
T ss_pred HHhcCCCEEEEEeCCCC-----------------CCHHHHHHHHHHHhccccccCccccceeeeeecccccccc
Confidence 22112456899999998 999999999988763221 1223455553 66666665
No 172
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.51 E-value=1e-06 Score=65.87 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-----HHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-----KVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-----~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
.++.++...+..||.+++|+|.+++.+-.. ..+...+.. ..+.|+++|.||+|+.+.. ... .+....+..
T Consensus 62 ~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~-~~~~~~~~~ 138 (201)
T cd04107 62 RFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL--AKD-GEQMDQFCK 138 (201)
T ss_pred hhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc--ccC-HHHHHHHHH
Confidence 355566677899999999999987643111 111111111 0357999999999997321 000 122233332
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.. ...+.+.+||+++ .|++++.+.|.+.+.
T Consensus 139 ~~---~~~~~~e~Sak~~-----------------~~v~e~f~~l~~~l~ 168 (201)
T cd04107 139 EN---GFIGWFETSAKEG-----------------INIEEAMRFLVKNIL 168 (201)
T ss_pred Hc---CCceEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 21 1246889999998 899999999887653
No 173
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.51 E-value=7.3e-07 Score=71.46 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=60.1
Q ss_pred HHHhhhccEEEEEEeCCCCCCC----CcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 19 RSVVEAADVILEVVDARDPMGT----RCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~----~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+.++++-++++|+|.+..... ....+...+..- .++|.++|+||+|+.... +..+...+++.+.
T Consensus 232 LrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-------e~~~~~~~~l~~~ 304 (369)
T COG0536 232 LRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-------EELEELKKALAEA 304 (369)
T ss_pred HHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-------HHHHHHHHHHHHh
Confidence 3556789999999998744321 112233333221 479999999999965431 3344444454422
Q ss_pred CCCc-eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYS-SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~-~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+ ..++||.++ .|+++|.+.+.+++..
T Consensus 305 ~~~~~~~~ISa~t~-----------------~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 305 LGWEVFYLISALTR-----------------EGLDELLRALAELLEE 334 (369)
T ss_pred cCCCcceeeehhcc-----------------cCHHHHHHHHHHHHHH
Confidence 2333 233999998 8999999998887654
No 174
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.51 E-value=4.4e-07 Score=64.94 Aligned_cols=95 Identities=14% Similarity=0.023 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|.+++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~-~~~~~~~~~---- 134 (161)
T cd04113 62 FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR--EVTF-LEASRFAQE---- 134 (161)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc--cCCH-HHHHHHHHH----
Confidence 44555677889999999999987643211 1222222211 478999999999997531 0000 111222221
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.+.+.+.+||+++ .|++++.+.+.+
T Consensus 135 ~~~~~~~~Sa~~~-----------------~~i~~~~~~~~~ 159 (161)
T cd04113 135 NGLLFLETSALTG-----------------ENVEEAFLKCAR 159 (161)
T ss_pred cCCEEEEEECCCC-----------------CCHHHHHHHHHH
Confidence 3467899999998 999999888754
No 175
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.51 E-value=4.1e-07 Score=68.83 Aligned_cols=100 Identities=14% Similarity=-0.011 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
.+..++...+..+|.+++|+|.+++.+-.+ ..+...+... ...|+++|.||+|+.+.. .... +....+.+.
T Consensus 64 ~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~--~v~~-~~~~~~~~~-- 138 (211)
T cd04111 64 RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR--QVTR-EEAEKLAKD-- 138 (211)
T ss_pred hHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc--ccCH-HHHHHHHHH--
Confidence 355665677899999999999987642111 1222222211 246788999999997531 0000 112222222
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+.+.+||+++ .|++++.+.|.+.+..
T Consensus 139 --~~~~~~e~Sak~g-----------------~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 139 --LGMKYIETSARTG-----------------DNVEEAFELLTQEIYE 167 (211)
T ss_pred --hCCEEEEEeCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 2467899999998 8999999999876543
No 176
>PLN03110 Rab GTPase; Provisional
Probab=98.51 E-value=5e-07 Score=68.57 Aligned_cols=99 Identities=12% Similarity=-0.103 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..++...+..+|.+|+|+|.+++.+-.. ..+...+... .+.|+++|.||+|+.... .... +....+..
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~-~~~~~l~~---- 145 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR--SVAE-EDGQALAE---- 145 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc--CCCH-HHHHHHHH----
Confidence 345565677899999999999987643211 1222223221 368999999999986431 0000 11122211
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+.+++.+||+++ .|++++.+.|.+.+.
T Consensus 146 ~~~~~~~e~SA~~g-----------------~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 146 KEGLSFLETSALEA-----------------TNVEKAFQTILLEIY 174 (216)
T ss_pred HcCCEEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 13578899999999 899999998876553
No 177
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.50 E-value=5.7e-07 Score=63.80 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...++.+|++++|+|..++....+ ..+...+... .+.|+++|+||+|+.+.. .... +.... ...
T Consensus 60 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~-~~~~~---~~~- 132 (160)
T cd00876 60 FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER--QVSK-EEGKA---LAK- 132 (160)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc--eecH-HHHHH---HHH-
Confidence 44445677889999999999877542111 1122222211 369999999999987631 0000 11111 111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
..+.+.+.+||+++ .|++++.+.|.+.
T Consensus 133 ~~~~~~~~~S~~~~-----------------~~i~~l~~~l~~~ 159 (160)
T cd00876 133 EWGCPFIETSAKDN-----------------INIDEVFKLLVRE 159 (160)
T ss_pred HcCCcEEEeccCCC-----------------CCHHHHHHHHHhh
Confidence 12467899999998 8999999988653
No 178
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.50 E-value=5.1e-07 Score=66.16 Aligned_cols=99 Identities=12% Similarity=-0.053 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccc---------cHHHHHH
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSG---------SMAQIFQ 81 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~---------~~~~~~~ 81 (161)
+..++...+..+|++|+|.|.+++.+-.. ..+...+... .+.|+++|.||+|+.+...... -..+...
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 44555567889999999999987643222 1233323321 3689999999999964310000 0001111
Q ss_pred HHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 82 TWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 82 ~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.+...+. ..+.+.+||+++ .|++++.+.+.+
T Consensus 142 ~~~~~~~---~~~~~e~Sa~~~-----------------~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIG---AVKYLECSALTQ-----------------KGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcC---CcEEEEeccccc-----------------CCHHHHHHHHHH
Confidence 1222211 236789999999 999999888754
No 179
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.50 E-value=4.1e-07 Score=65.67 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=58.6
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.++...+..+|.+++|.|.+++.+-.. ..+.+.+... .+.|+++|.||+|+.+.. ... .+....+...
T Consensus 64 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~v~-~~~~~~~~~~--- 137 (165)
T cd04140 64 AMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKR--EVS-SNEGAACATE--- 137 (165)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccC--eec-HHHHHHHHHH---
Confidence 343456789999999999987643211 2222223220 358999999999996531 000 0111112111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
...+.+.+||+++ .|++++.+.|.++
T Consensus 138 -~~~~~~e~SA~~g-----------------~~v~~~f~~l~~~ 163 (165)
T cd04140 138 -WNCAFMETSAKTN-----------------HNVQELFQELLNL 163 (165)
T ss_pred -hCCcEEEeecCCC-----------------CCHHHHHHHHHhc
Confidence 2456789999999 9999999998765
No 180
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.2e-06 Score=73.70 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
+|.|.-=..|+. +=.+-+|++++|+|+.++.-.+..+..++++. .+.|+++++||+|..+.+... ....+..+
T Consensus 62 TPGHeAFt~mRa---RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~-a~vP~iVAiNKiDk~~~np~~--v~~el~~~- 134 (509)
T COG0532 62 TPGHEAFTAMRA---RGASVTDIAILVVAADDGVMPQTIEAINHAKA-AGVPIVVAINKIDKPEANPDK--VKQELQEY- 134 (509)
T ss_pred CCcHHHHHHHHh---cCCccccEEEEEEEccCCcchhHHHHHHHHHH-CCCCEEEEEecccCCCCCHHH--HHHHHHHc-
Confidence 466544332333 34467999999999999988877777787877 799999999999987652111 00001110
Q ss_pred hhhccC--CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 85 PYNSIQ--SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 85 ~~~~~~--~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
....+. ....++++||+++ .|+++|++.|.-.+
T Consensus 135 gl~~E~~gg~v~~VpvSA~tg-----------------~Gi~eLL~~ill~a 169 (509)
T COG0532 135 GLVPEEWGGDVIFVPVSAKTG-----------------EGIDELLELILLLA 169 (509)
T ss_pred CCCHhhcCCceEEEEeeccCC-----------------CCHHHHHHHHHHHH
Confidence 000100 1235799999999 99999999986443
No 181
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.50 E-value=3.9e-07 Score=66.98 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh--hh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP--YN 87 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~ 87 (161)
++.+|......+|.++||+|++++.. +....+.+.+... .+.|+++++||.|+.+.- .. +.+..... .+
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~----~~-~~i~~~l~l~~l 145 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM----SE-EEIKEYLGLEKL 145 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS----TH-HHHHHHTTGGGT
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc----hh-hHHHhhhhhhhc
Confidence 55677778889999999999987532 1112334444321 479999999999986541 00 22222221 22
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.......++..||.++ .|+.+-+++|.+.
T Consensus 146 ~~~~~~~v~~~sa~~g-----------------~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 KNKRPWSVFSCSAKTG-----------------EGVDEGLEWLIEQ 174 (175)
T ss_dssp TSSSCEEEEEEBTTTT-----------------BTHHHHHHHHHHH
T ss_pred ccCCceEEEeeeccCC-----------------cCHHHHHHHHHhc
Confidence 2112345778899998 9999999998764
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.49 E-value=1.2e-06 Score=75.81 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=65.4
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.|.|.. | ..++.+....+|++++|+|+.++...+..+...++.. .+.|+++++||+|+..... +.+..+.
T Consensus 142 TPGhe~--F-~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~vPiIVviNKiDl~~~~~------e~v~~~L 211 (587)
T TIGR00487 142 TPGHEA--F-TSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-ANVPIIVAINKIDKPEANP------DRVKQEL 211 (587)
T ss_pred CCCCcc--h-hhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cCCCEEEEEECcccccCCH------HHHHHHH
Confidence 366543 2 2333467889999999999988765555554554444 5799999999999864310 1122221
Q ss_pred hhh---ccC--CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 85 PYN---SIQ--SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 85 ~~~---~~~--~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
..+ ... ...+++++||+++ .|+++|++.|..
T Consensus 212 ~~~g~~~~~~~~~~~~v~iSAktG-----------------eGI~eLl~~I~~ 247 (587)
T TIGR00487 212 SEYGLVPEDWGGDTIFVPVSALTG-----------------DGIDELLDMILL 247 (587)
T ss_pred HHhhhhHHhcCCCceEEEEECCCC-----------------CChHHHHHhhhh
Confidence 111 000 1246899999999 899999998854
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.48 E-value=1.3e-06 Score=77.55 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=63.0
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh---hhccC--C
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP---YNSIQ--S 91 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~--~ 91 (161)
++...+..+|++|+|+|+.++...+..+...++.. .+.|+|+++||+|+.... . +.+...+. .+.+. .
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~vPiIVviNKiDl~~a~-----~-e~V~~eL~~~~~~~e~~g~ 425 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AGVPIIVAINKIDKPGAN-----P-DRVKQELSEYGLVPEEWGG 425 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cCCcEEEEEECccccccC-----H-HHHHHHHHHhcccHHHhCC
Confidence 33567788999999999998766555555555544 589999999999996431 0 11111111 11100 1
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
..+++++||+++ .|+++|++.|...
T Consensus 426 ~vp~vpvSAktG-----------------~GI~eLle~I~~~ 450 (787)
T PRK05306 426 DTIFVPVSAKTG-----------------EGIDELLEAILLQ 450 (787)
T ss_pred CceEEEEeCCCC-----------------CCchHHHHhhhhh
Confidence 357899999999 8999999998643
No 184
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.48 E-value=9.6e-07 Score=69.47 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=48.0
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
.|.|. .|..+. ..++..+|++++|+|+..+...++..+.+.+.. .++|+++++||+|+...
T Consensus 71 TPG~~--df~~~~-~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~-~~~p~ivviNK~D~~~a 131 (270)
T cd01886 71 TPGHV--DFTIEV-ERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR-YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred CCCcH--HHHHHH-HHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEEEEEECCCCCCC
Confidence 35543 355555 789999999999999998877766777776665 68999999999998753
No 185
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.47 E-value=3e-06 Score=70.65 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=51.7
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCC---CCCcHHHHHHHhCCCCCcEEEEeecCCCCCcc-cccccHHHHHH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPM---GTRCKVAEDLVVGTPGKKLVIVINKAGKPSTK-IQSGSMAQIFQ 81 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~---~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~-~~~~~~~~~~~ 81 (161)
|.|. .|+..+ ...+..+|++++|+|++++. ..+..+...+.......++|+|+||+|+.+.. .+.......+.
T Consensus 93 pGh~--~f~~~~-~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~ 169 (426)
T TIGR00483 93 PGHR--DFIKNM-ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVS 169 (426)
T ss_pred CCHH--HHHHHH-HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHH
Confidence 4443 355666 56778999999999999873 22222212222221235789999999997421 00000111122
Q ss_pred HHhhhhcc-CCCCceeEEeecCC
Q psy8220 82 TWIPYNSI-QSIYSSPRFSSRSQ 103 (161)
Q Consensus 82 ~~~~~~~~-~~~~~~i~iSa~~~ 103 (161)
.+.+.+.. ....+++++||+++
T Consensus 170 ~~~~~~g~~~~~~~~i~iSA~~g 192 (426)
T TIGR00483 170 NLIKKVGYNPDTVPFIPISAWNG 192 (426)
T ss_pred HHHHHcCCCcccceEEEeecccc
Confidence 22222110 01256899999998
No 186
>KOG1423|consensus
Probab=98.47 E-value=6.9e-07 Score=70.79 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
.+...- +.++..||+|+.|+|++++-....+.+...+..-...|-|+|+||+|..+.
T Consensus 144 s~lq~~-~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 144 SVLQNP-RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ 200 (379)
T ss_pred HhhhCH-HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh
Confidence 334444 789999999999999987544455655554443136899999999997654
No 187
>PRK00007 elongation factor G; Reviewed
Probab=98.45 E-value=1e-06 Score=77.56 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=51.7
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+|.|. .|+.+. ..++..+|++++|+|+..++..++..+..++.. .++|+|+++||+|+.+.
T Consensus 82 TPG~~--~f~~ev-~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~-~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 82 TPGHV--DFTIEV-ERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK-YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred CCCcH--HHHHHH-HHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH-cCCCEEEEEECCCCCCC
Confidence 46653 467777 789999999999999999988888888887776 68999999999999865
No 188
>KOG0462|consensus
Probab=98.45 E-value=9.1e-07 Score=74.66 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHH--hCCCCCcEEEEeecCCCCCcccccccHHHHHHH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLV--VGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQT 82 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l--~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 82 (161)
+|.|.= |--|. .+.+..+|=+|+|+||.+++..+ .+.++. .+ .+-.+|.|+||+|+.... . +.++.
T Consensus 132 TPGHvD--Fs~EV-sRslaac~G~lLvVDA~qGvqAQ--T~anf~lAfe-~~L~iIpVlNKIDlp~ad-----p-e~V~~ 199 (650)
T KOG0462|consen 132 TPGHVD--FSGEV-SRSLAACDGALLVVDASQGVQAQ--TVANFYLAFE-AGLAIIPVLNKIDLPSAD-----P-ERVEN 199 (650)
T ss_pred CCCccc--cccee-hehhhhcCceEEEEEcCcCchHH--HHHHHHHHHH-cCCeEEEeeeccCCCCCC-----H-HHHHH
Confidence 355432 34455 67888999999999999887543 333332 22 578999999999997652 1 22222
Q ss_pred -HhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 83 -WIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 83 -~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+.|. ....+++.+||++| .|+++|+++|.+..|.
T Consensus 200 q~~~lF~-~~~~~~i~vSAK~G-----------------~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 200 QLFELFD-IPPAEVIYVSAKTG-----------------LNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHHhc-CCccceEEEEeccC-----------------ccHHHHHHHHHhhCCC
Confidence 222332 13446899999999 8999999999887653
No 189
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.44 E-value=2.7e-06 Score=65.63 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
|..+. ..++..+|.+++|+|+.++...+...+.+.+.. .+.|+++++||+|+...
T Consensus 77 f~~~~-~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~~P~iivvNK~D~~~a 131 (237)
T cd04168 77 FIAEV-ERSLSVLDGAILVISAVEGVQAQTRILWRLLRK-LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred hHHHH-HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cCCCEEEEEECccccCC
Confidence 44455 688999999999999998876555666666655 68999999999998754
No 190
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.43 E-value=5.1e-07 Score=65.52 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=58.9
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
...+..+|++++|+|.+++.+-.. ..+...+... .+.|+++|.||+|+.... . . .....+. . ....+.+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~--~-~--~~~~~~~---~-~~~~~~~ 137 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK--V-K--AKQITFH---R-KKNLQYY 137 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc--C-C--HHHHHHH---H-HcCCEEE
Confidence 345678999999999987643211 1222333221 369999999999997431 0 0 1111111 1 1355689
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+||+++ .|++++.+.|.+.+.
T Consensus 138 e~Sa~~~-----------------~~v~~~f~~l~~~~~ 159 (166)
T cd00877 138 EISAKSN-----------------YNFEKPFLWLARKLL 159 (166)
T ss_pred EEeCCCC-----------------CChHHHHHHHHHHHH
Confidence 9999999 899999999987654
No 191
>PLN03118 Rab family protein; Provisional
Probab=98.43 E-value=1.1e-06 Score=66.20 Aligned_cols=98 Identities=15% Similarity=-0.041 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCK--VAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
+..++...+..+|.+|+|+|+.++.+-.+. .+...+.. ..+.|+++|.||+|+.... .... +....+.. .
T Consensus 75 ~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~--~i~~-~~~~~~~~--~ 149 (211)
T PLN03118 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESER--DVSR-EEGMALAK--E 149 (211)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC--ccCH-HHHHHHHH--H
Confidence 444556778899999999999876432111 12122211 0357899999999997541 0000 11111111 1
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|++++.+.|.+.+.
T Consensus 150 --~~~~~~e~SAk~~-----------------~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 150 --HGCLFLECSAKTR-----------------ENVEQCFEELALKIM 177 (211)
T ss_pred --cCCEEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2456789999998 899999999987664
No 192
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.43 E-value=2.2e-06 Score=71.85 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=47.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
...++.||++++|+|++++.+..+. +...+.. .++|+++|+||+|+.+. + ...+... .+.+++.+
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-~~~piIlV~NK~Dl~~~--------~-~~~~~~~----~~~~~~~v 341 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-SKKPFILVLNKIDLKIN--------S-LEFFVSS----KVLNSSNL 341 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-CCCCEEEEEECccCCCc--------c-hhhhhhh----cCCceEEE
Confidence 5678899999999999887654333 3343433 47899999999999643 1 1111111 24567889
Q ss_pred eecCC
Q psy8220 99 SSRSQ 103 (161)
Q Consensus 99 Sa~~~ 103 (161)
||+++
T Consensus 342 Sak~~ 346 (442)
T TIGR00450 342 SAKQL 346 (442)
T ss_pred EEecC
Confidence 99873
No 193
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.41 E-value=1e-06 Score=66.32 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.++.++...+..+|++++|+|.++..+-.. ..+...+... .+.|+++|.||+|+.... . .. +. ..+...
T Consensus 56 ~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~--v-~~-~~-~~~~~~---- 126 (200)
T smart00176 56 KFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK--V-KA-KS-ITFHRK---- 126 (200)
T ss_pred hhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc--C-CH-HH-HHHHHH----
Confidence 355666678899999999999987643211 1233333321 368999999999985431 0 10 11 122111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|++++.+.|.+.+.
T Consensus 127 ~~~~~~e~SAk~~-----------------~~v~~~F~~l~~~i~ 154 (200)
T smart00176 127 KNLQYYDISAKSN-----------------YNFEKPFLWLARKLI 154 (200)
T ss_pred cCCEEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 3567889999999 899999999886554
No 194
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.40 E-value=2.8e-06 Score=61.33 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHH-HHhC--C---CCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAED-LVVG--T---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~-~l~~--~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
.++.++...+..+|.+++|.|..++.+-.. ..+.. .+.. . .+.|+++|.||+|+.+... . .+....+.+
T Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~-~~~~~~~~~ 141 (170)
T cd04116 66 RFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQV---S-TEEAQAWCR 141 (170)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccccc---C-HHHHHHHHH
Confidence 345566677889999999999886642111 11222 2111 0 2579999999999864310 1 122233333
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.+ ...+.+.+||+++ .|+.++.+.+.+
T Consensus 142 ~~---~~~~~~e~Sa~~~-----------------~~v~~~~~~~~~ 168 (170)
T cd04116 142 EN---GDYPYFETSAKDA-----------------TNVAAAFEEAVR 168 (170)
T ss_pred HC---CCCeEEEEECCCC-----------------CCHHHHHHHHHh
Confidence 22 1346889999998 899999887754
No 195
>KOG1145|consensus
Probab=98.40 E-value=2.7e-06 Score=71.92 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=72.4
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
+|.|+-=+.|+. +=..-+|+|++|+-+.++.-.+..+.+.+.+. .+.|+++++||||-...+++ .......
T Consensus 208 TPGHaAF~aMRa---RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~-A~VpiVvAinKiDkp~a~pe-----kv~~eL~ 278 (683)
T KOG1145|consen 208 TPGHAAFSAMRA---RGANVTDIVVLVVAADDGVMPQTLEAIKHAKS-ANVPIVVAINKIDKPGANPE-----KVKRELL 278 (683)
T ss_pred CCcHHHHHHHHh---ccCccccEEEEEEEccCCccHhHHHHHHHHHh-cCCCEEEEEeccCCCCCCHH-----HHHHHHH
Confidence 588876555665 35567999999999999988777777777776 79999999999997654211 1111111
Q ss_pred hh---hccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 85 PY---NSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 85 ~~---~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+ .+.. ....+++|||+++ .|++.|.+++.-.+
T Consensus 279 ~~gi~~E~~GGdVQvipiSAl~g-----------------~nl~~L~eaill~A 315 (683)
T KOG1145|consen 279 SQGIVVEDLGGDVQVIPISALTG-----------------ENLDLLEEAILLLA 315 (683)
T ss_pred HcCccHHHcCCceeEEEeecccC-----------------CChHHHHHHHHHHH
Confidence 10 0101 1235899999999 99999999986554
No 196
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.40 E-value=1.8e-06 Score=62.48 Aligned_cols=96 Identities=14% Similarity=0.153 Sum_probs=56.7
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc-c
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS-I 89 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~ 89 (161)
...|...++.+|.+++|+|+.++..-. ...+...+... .+.|+++++||+|+.... .. +.+........ .
T Consensus 72 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~-~~i~~~l~~~~~~ 146 (173)
T cd04155 72 RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA----PA-EEIAEALNLHDLR 146 (173)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC----CH-HHHHHHcCCcccC
Confidence 344566788999999999998642211 11222222211 368999999999986541 01 11111111100 0
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
....+++.+||+++ .|++++.++|.+
T Consensus 147 ~~~~~~~~~Sa~~~-----------------~gi~~~~~~l~~ 172 (173)
T cd04155 147 DRTWHIQACSAKTG-----------------EGLQEGMNWVCK 172 (173)
T ss_pred CCeEEEEEeECCCC-----------------CCHHHHHHHHhc
Confidence 01224678999999 999999988753
No 197
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.40 E-value=2.8e-06 Score=77.28 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=39.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPS 68 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~ 68 (161)
......+|++++|+|+++++..+..+....+.. .+.|+++|+||+|+.+
T Consensus 544 ~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~-~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 544 KRGGSLADLAVLVVDINEGFKPQTIEAINILRQ-YKTPFVVAANKIDLIP 592 (1049)
T ss_pred HhhcccCCEEEEEEECcccCCHhHHHHHHHHHH-cCCCEEEEEECCCCcc
Confidence 345678999999999998776666666666665 5789999999999975
No 198
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.40 E-value=2.2e-06 Score=65.64 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=54.5
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEE-EEeecCCCCCcccccccHHHHHHHHhhhhc--cCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLV-IVINKAGKPSTKIQSGSMAQIFQTWIPYNS--IQS 91 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~i-lVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~ 91 (161)
..+ .+.++.+|++++|+|++.+....+..+.+.+.. .+.|.+ +|+||+|+.++. +.+.+........+. ...
T Consensus 95 ~~~-l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~-~g~p~vi~VvnK~D~~~~~---~~~~~~~~~l~~~~~~~~~~ 169 (225)
T cd01882 95 NAM-IDIAKVADLVLLLIDASFGFEMETFEFLNILQV-HGFPRVMGVLTHLDLFKKN---KTLRKTKKRLKHRFWTEVYQ 169 (225)
T ss_pred HHH-HHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHH-cCCCeEEEEEeccccCCcH---HHHHHHHHHHHHHHHHhhCC
Confidence 444 567899999999999998877777777777765 567854 599999997541 011111111111111 013
Q ss_pred CCceeEEeecCC
Q psy8220 92 IYSSPRFSSRSQ 103 (161)
Q Consensus 92 ~~~~i~iSa~~~ 103 (161)
+.+++++||++.
T Consensus 170 ~~ki~~iSa~~~ 181 (225)
T cd01882 170 GAKLFYLSGIVH 181 (225)
T ss_pred CCcEEEEeeccC
Confidence 567999999986
No 199
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.39 E-value=7.2e-07 Score=68.00 Aligned_cols=91 Identities=13% Similarity=0.026 Sum_probs=58.3
Q ss_pred Hhh-hccEEEEEEeCCCCCCCC-cHHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 21 VVE-AADVILEVVDARDPMGTR-CKVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 21 ~i~-~aDviL~VvD~~~~~~~~-~~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
.+. .+|++++|+|++++.+-. ...+...+... .+.|+|+|.||+|+.+.. .... +....+... .+.++
T Consensus 68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~--~v~~-~~~~~~a~~----~~~~~ 140 (221)
T cd04148 68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR--EVSV-QEGRACAVV----FDCKF 140 (221)
T ss_pred HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc--eecH-HHHHHHHHH----cCCeE
Confidence 345 899999999998764321 12233333221 368999999999996541 0000 111122211 24578
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+||+++ .|+++|.+.|.+.+.
T Consensus 141 ~e~SA~~~-----------------~gv~~l~~~l~~~~~ 163 (221)
T cd04148 141 IETSAGLQ-----------------HNVDELLEGIVRQIR 163 (221)
T ss_pred EEecCCCC-----------------CCHHHHHHHHHHHHH
Confidence 89999999 899999999987764
No 200
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.38 E-value=3.9e-06 Score=61.83 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=71.5
Q ss_pred CCCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCC-CcEEEEeecCCCCCcccccccHHHHHHH
Q psy8220 4 VKPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTKIQSGSMAQIFQT 82 (161)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 82 (161)
..|.|.+-.||.++ ..+.++-.++++|++.+.......+.+++.. .. .|+++++||.||.+. ...+.
T Consensus 74 gtPGq~RF~fm~~~---l~~ga~gaivlVDss~~~~~~a~~ii~f~~~-~~~ip~vVa~NK~DL~~a--------~ppe~ 141 (187)
T COG2229 74 GTPGQERFKFMWEI---LSRGAVGAIVLVDSSRPITFHAEEIIDFLTS-RNPIPVVVAINKQDLFDA--------LPPEK 141 (187)
T ss_pred cCCCcHHHHHHHHH---HhCCcceEEEEEecCCCcchHHHHHHHHHhh-ccCCCEEEEeeccccCCC--------CCHHH
Confidence 46888887788777 5677999999999999987666778887765 44 899999999999764 11122
Q ss_pred HhhhhccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 83 WIPYNSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 83 ~~~~~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
..+++... ...|++..+|..+ .|..+.++.+...
T Consensus 142 i~e~l~~~~~~~~vi~~~a~e~-----------------~~~~~~L~~ll~~ 176 (187)
T COG2229 142 IREALKLELLSVPVIEIDATEG-----------------EGARDQLDVLLLK 176 (187)
T ss_pred HHHHHHhccCCCceeeeecccc-----------------hhHHHHHHHHHhh
Confidence 22333211 2567899999877 6766666665443
No 201
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.38 E-value=1.3e-06 Score=64.03 Aligned_cols=99 Identities=9% Similarity=-0.029 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccccc--------ccH-HHHHH
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQS--------GSM-AQIFQ 81 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~--------~~~-~~~~~ 81 (161)
+..++...+..+|++++|.|.+++.+-.. ..+...+... .+.|+++|.||+|+.+...-. ... .+...
T Consensus 62 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~ 141 (175)
T cd01874 62 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHH
Confidence 34444457789999999999987643222 1233334321 468999999999986531000 000 00011
Q ss_pred HHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 82 TWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 82 ~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.+...+ ...+++.+||+++ .|++++.+.+.+
T Consensus 142 ~~a~~~---~~~~~~e~SA~tg-----------------~~v~~~f~~~~~ 172 (175)
T cd01874 142 KLARDL---KAVKYVECSALTQ-----------------KGLKNVFDEAIL 172 (175)
T ss_pred HHHHHh---CCcEEEEecCCCC-----------------CCHHHHHHHHHH
Confidence 111111 1246889999999 899999888765
No 202
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.37 E-value=4e-06 Score=72.56 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=40.7
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPS 68 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~ 68 (161)
..++...+..+|++++|+|++++...+......++.. .+.|+++++||+|+.+
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-RKTPFVVAANKIDRIP 137 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-cCCCEEEEEECcCCch
Confidence 3444566788999999999998766555555566655 6899999999999863
No 203
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.37 E-value=2.5e-06 Score=65.19 Aligned_cols=102 Identities=10% Similarity=-0.009 Sum_probs=60.5
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcc-----------------cccc
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTK-----------------IQSG 74 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~-----------------~~~~ 74 (161)
..++...+..+|++|+|+|.+++.+-.+ ..+....... .+.|+|+|.||+||.... .+..
T Consensus 58 ~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v 137 (220)
T cd04126 58 HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV 137 (220)
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC
Confidence 3344556789999999999987643211 1222222211 357999999999997510 0011
Q ss_pred cHHHHHHHHhhhhcc----------CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 75 SMAQIFQTWIPYNSI----------QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 75 ~~~~~~~~~~~~~~~----------~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.. +....|.+.+.. ....+.+.+||+++ .|++++...+.+.+
T Consensus 138 ~~-~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg-----------------~~V~elf~~i~~~~ 189 (220)
T cd04126 138 TL-EDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG-----------------YNVDELFEYLFNLV 189 (220)
T ss_pred CH-HHHHHHHHHhCccccccccccccccceEEEeeCCCC-----------------CCHHHHHHHHHHHH
Confidence 11 122333332210 00146789999999 89999988887654
No 204
>PRK12739 elongation factor G; Reviewed
Probab=98.37 E-value=2.2e-06 Score=75.50 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+|.|. .|+.+. ..++..+|++++|+|+..+...++..+..++.. .++|.|+++||+|+.+.
T Consensus 80 TPG~~--~f~~e~-~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~-~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 80 TPGHV--DFTIEV-ERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK-YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred CCCHH--HHHHHH-HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cCCCEEEEEECCCCCCC
Confidence 46653 467776 799999999999999999887777788777766 68999999999999865
No 205
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.36 E-value=2.5e-06 Score=63.39 Aligned_cols=104 Identities=10% Similarity=-0.056 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhCC-CCCcEEEEeecCCCCCccccccc---------HHHH
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCK--VAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGS---------MAQI 79 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~---------~~~~ 79 (161)
+.++.++...+..||++|+|.|.+++.+-... .+...+... .+.|+++|.||.||.+....... ..+.
T Consensus 62 e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 141 (191)
T cd01875 62 EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQ 141 (191)
T ss_pred hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHH
Confidence 33555655677899999999999876532111 122223221 46899999999999643100000 0001
Q ss_pred HHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 80 FQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
...+...+ ...+.+.+||+++ .|++++.+.|.+.+.
T Consensus 142 ~~~~a~~~---~~~~~~e~SAk~g-----------------~~v~e~f~~l~~~~~ 177 (191)
T cd01875 142 GGALAKQI---HAVKYLECSALNQ-----------------DGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHHHc---CCcEEEEeCCCCC-----------------CCHHHHHHHHHHHHh
Confidence 11111111 1246789999998 899999999876553
No 206
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.36 E-value=1.1e-06 Score=63.34 Aligned_cols=92 Identities=14% Similarity=-0.017 Sum_probs=56.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC----CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG----TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
...+..+|++++|+|+.++.+-.. ..+...+.. ..+.|+++|.||+|+.... .... +....+... .+.
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~----~~~ 138 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYR--QVST-EEGEKLASE----LGC 138 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhC--ccCH-HHHHHHHHH----cCC
Confidence 456788999999999987643211 122222221 1368999999999985431 0000 111222222 246
Q ss_pred ceeEEeecCCCCcchhhhhhhhcccccc-CHHHHHHHHHhHh
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCV-GAELLMLLLGNYT 134 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~-g~~~L~~~l~~~~ 134 (161)
+.+.+||+++ . |++++.+.|.+.+
T Consensus 139 ~~~e~Sa~~~-----------------~~~v~~~f~~l~~~~ 163 (165)
T cd04146 139 LFFEVSAAED-----------------YDGVHSVFHELCREV 163 (165)
T ss_pred EEEEeCCCCC-----------------chhHHHHHHHHHHHH
Confidence 7889999987 4 8999988886543
No 207
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.35 E-value=2e-06 Score=59.17 Aligned_cols=89 Identities=18% Similarity=0.045 Sum_probs=56.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHH-----HHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAE-----DLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~-----~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
...+..+|.+++|+|+..+....+.... ..... .+.|+++|+||+|+.+... . ..... ..........
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivv~nk~D~~~~~~----~-~~~~~-~~~~~~~~~~ 135 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEG-ENIPIILVGNKIDLPEERV----V-SEEEL-AEQLAKELGV 135 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhcc-CCCcEEEEEeccccccccc----h-HHHHH-HHHHHhhcCC
Confidence 5677899999999999876543222111 11111 5799999999999976520 0 11000 1111111356
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHH
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLG 131 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~ 131 (161)
+++.+|+..+ .|+.++++.|.
T Consensus 136 ~~~~~s~~~~-----------------~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFETSAKTG-----------------ENVEELFEELA 156 (157)
T ss_pred cEEEEecCCC-----------------CChHHHHHHHh
Confidence 7899999988 89999988864
No 208
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.35 E-value=1e-06 Score=67.05 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
+..++......+|.+|+|+|.+++.+-.. ..+.+.+... .+.|+++|.||+|+..... . .+.+ .+.. ..
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v---~-~~~~-~~~~----~~ 145 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---K-AKQV-TFHR----KK 145 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccC---C-HHHH-HHHH----hc
Confidence 44555556789999999999987643211 1222333321 4689999999999864310 0 0111 1111 13
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+.+.+||+++ .|++++.+.|.+.+.
T Consensus 146 ~~~~~e~SAk~~-----------------~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 146 NLQYYEISAKSN-----------------YNFEKPFLYLARKLA 172 (219)
T ss_pred CCEEEEcCCCCC-----------------CCHHHHHHHHHHHHH
Confidence 566789999999 899999988876554
No 209
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.34 E-value=1.5e-06 Score=63.21 Aligned_cols=96 Identities=9% Similarity=-0.020 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccc---------ccccHHHHHH
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKI---------QSGSMAQIFQ 81 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~---------~~~~~~~~~~ 81 (161)
+..++...++.+|.+++|.|.+++.+-.. ..+...+... .+.|+++|.||+|+.+... +..-..+...
T Consensus 61 ~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 140 (173)
T cd04130 61 FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAK 140 (173)
T ss_pred hccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHH
Confidence 33444456789999999999987643221 2233334321 3689999999999965310 0000001112
Q ss_pred HHhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHH
Q psy8220 82 TWIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLL 130 (161)
Q Consensus 82 ~~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l 130 (161)
.+.+. .+. +++.+||+++ .|+++|.+.+
T Consensus 141 ~~a~~----~~~~~~~e~Sa~~~-----------------~~v~~lf~~~ 169 (173)
T cd04130 141 ALAEK----IGACEYIECSALTQ-----------------KNLKEVFDTA 169 (173)
T ss_pred HHHHH----hCCCeEEEEeCCCC-----------------CCHHHHHHHH
Confidence 22221 233 6889999999 8999998775
No 210
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.34 E-value=2.4e-06 Score=62.34 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHH-HHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR-CKVA-EDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i-~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++......+|.+++|+|..+...-. ...+ ...+... .+.|+++|.||+|+.... .... +........
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~-~~~~~~~~~--- 135 (180)
T cd04137 62 YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR--QVST-EEGKELAES--- 135 (180)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC--ccCH-HHHHHHHHH---
Confidence 4455566778999999999988643211 1111 2222210 367999999999986431 0000 111111111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+++.+||+++ .|++++.+.|.+.+..
T Consensus 136 -~~~~~~~~Sa~~~-----------------~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 136 -WGAAFLESSAREN-----------------ENVEEAFELLIEEIEK 164 (180)
T ss_pred -cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 2457889999998 8999999999876643
No 211
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.34 E-value=1.4e-06 Score=64.47 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=60.9
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccc--------cH-HHHHHH
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSG--------SM-AQIFQT 82 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~--------~~-~~~~~~ 82 (161)
..++...+..+|++++|.|.+++.+-.. ..+...+... .+.|+++|.||+|+........ .. .+....
T Consensus 62 ~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (189)
T cd04134 62 DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 3444446788999999999887643221 1233333321 4789999999999965410000 00 000111
Q ss_pred HhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 83 WIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 83 ~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.... ...+.+.+||+++ .|++++.+.|.+.+-
T Consensus 142 ~~~~~---~~~~~~e~SAk~~-----------------~~v~e~f~~l~~~~~ 174 (189)
T cd04134 142 VAKRI---NALRYLECSAKLN-----------------RGVNEAFTEAARVAL 174 (189)
T ss_pred HHHHc---CCCEEEEccCCcC-----------------CCHHHHHHHHHHHHh
Confidence 11111 1246789999998 899999999887664
No 212
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.33 E-value=2.8e-06 Score=61.64 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-H-HHHHHHhCC--CCCcEEEEeecCCCCCc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-K-VAEDLVVGT--PGKKLVIVINKAGKPST 69 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~-~i~~~l~~~--~~k~~ilVlNK~Dl~~~ 69 (161)
.++.+|...+..||++++|+|++++..-.. . .+...+... .++|+++|.||+|+...
T Consensus 55 ~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 55 NFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 356677888999999999999987642111 1 222222221 36899999999998654
No 213
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.33 E-value=2.5e-06 Score=61.86 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=57.4
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
.++...+..+|.+++|+|++++.+-.+ ..+.+.+... .+.|+++|.||+|+.... .... +....+... .
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~-~~~~~~~~~----~ 139 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI--QVPT-DLAQRFADA----H 139 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhc--CCCH-HHHHHHHHH----c
Confidence 455566789999999999987643222 1222222221 368999999999986431 0000 111111111 2
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
..+.+.+||+++. ...+++++...+.+.
T Consensus 140 ~~~~~e~Sa~~~~--------------~~~~i~~~f~~l~~~ 167 (170)
T cd04115 140 SMPLFETSAKDPS--------------ENDHVEAIFMTLAHK 167 (170)
T ss_pred CCcEEEEeccCCc--------------CCCCHHHHHHHHHHH
Confidence 4678889999841 127788887776543
No 214
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.32 E-value=1.4e-06 Score=62.74 Aligned_cols=93 Identities=11% Similarity=-0.037 Sum_probs=55.7
Q ss_pred HHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccc-------c-HHHHHHHHhhhhc
Q psy8220 20 SVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSG-------S-MAQIFQTWIPYNS 88 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~-------~-~~~~~~~~~~~~~ 88 (161)
..+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+...... . ..+....+...+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 145 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI- 145 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh-
Confidence 34578999999999987533111 1222323221 3699999999999876520000 0 001111111111
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
...+++.+||+++ .|+++|.+.|.+
T Consensus 146 --~~~~~~~~Sa~~~-----------------~gi~~l~~~i~~ 170 (171)
T cd00157 146 --GAIGYMECSALTQ-----------------EGVKEVFEEAIR 170 (171)
T ss_pred --CCeEEEEeecCCC-----------------CCHHHHHHHHhh
Confidence 1237899999998 899999988754
No 215
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.32 E-value=4.8e-06 Score=64.14 Aligned_cols=99 Identities=9% Similarity=-0.012 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcc----------cccccHHHH
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTK----------IQSGSMAQI 79 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~----------~~~~~~~~~ 79 (161)
.+..++...+..||++++|.|.+++.+-.. ..+...+... .+.|+++|.||+||.... .+.... +.
T Consensus 73 ~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~-~e 151 (232)
T cd04174 73 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISY-EQ 151 (232)
T ss_pred hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCH-HH
Confidence 345554557889999999999987654221 2233334321 468999999999985310 000010 11
Q ss_pred HHHHhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhcccccc-CHHHHHHHHHhH
Q psy8220 80 FQTWIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCV-GAELLMLLLGNY 133 (161)
Q Consensus 80 ~~~~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~-g~~~L~~~l~~~ 133 (161)
...|.+. .+. +.+.+||+++ . |++++.+.+...
T Consensus 152 ~~~~a~~----~~~~~~~EtSAktg-----------------~~~V~e~F~~~~~~ 186 (232)
T cd04174 152 GCALAKQ----LGAEVYLECSAFTS-----------------EKSIHSIFRSASLL 186 (232)
T ss_pred HHHHHHH----cCCCEEEEccCCcC-----------------CcCHHHHHHHHHHH
Confidence 2222222 244 4678999998 6 788888887554
No 216
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.31 E-value=3.7e-06 Score=62.27 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccc--------ccccH-HHHHH
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKI--------QSGSM-AQIFQ 81 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~--------~~~~~-~~~~~ 81 (161)
+..++...+..||++|+|.|.+++.+-.. ..+.+.+... .+.|+++|.||+||.+... +.... .+...
T Consensus 66 ~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 145 (182)
T cd04172 66 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA 145 (182)
T ss_pred hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHH
Confidence 44554557889999999999987643222 1233333321 4689999999999854200 00000 01122
Q ss_pred HHhhhhccCCC-CceeEEeecCCCCcchhhhhhhhccccccC-HHHHHHHHHhH
Q psy8220 82 TWIPYNSIQSI-YSSPRFSSRSQKDAQTERDLKAINVSSCVG-AELLMLLLGNY 133 (161)
Q Consensus 82 ~~~~~~~~~~~-~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g-~~~L~~~l~~~ 133 (161)
.+.+. .+ .+.+.+||+++ .| ++++.+.+...
T Consensus 146 ~~a~~----~~~~~~~E~SAk~~-----------------~n~v~~~F~~~~~~ 178 (182)
T cd04172 146 NMAKQ----IGAATYIECSALQS-----------------ENSVRDIFHVATLA 178 (182)
T ss_pred HHHHH----cCCCEEEECCcCCC-----------------CCCHHHHHHHHHHH
Confidence 22222 24 36788999999 77 88888776553
No 217
>PLN03108 Rab family protein; Provisional
Probab=98.29 E-value=3.9e-06 Score=63.32 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..++...+..+|.+++|+|+.++.+... ..+...+... ...|+++|.||+|+.... .... +....+...
T Consensus 67 ~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~-~~~~~~~~~--- 140 (210)
T PLN03108 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR--AVST-EEGEQFAKE--- 140 (210)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc--CCCH-HHHHHHHHH---
Confidence 344555667789999999999987643221 1222212211 368999999999996531 0010 112222222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+.+.+.+||+++ .|++++++.+.+.
T Consensus 141 -~~~~~~e~Sa~~~-----------------~~v~e~f~~l~~~ 166 (210)
T PLN03108 141 -HGLIFMEASAKTA-----------------QNVEEAFIKTAAK 166 (210)
T ss_pred -cCCEEEEEeCCCC-----------------CCHHHHHHHHHHH
Confidence 3567899999998 8888877665443
No 218
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.28 E-value=1e-05 Score=67.88 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=53.5
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCC-------CCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMG-------TRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMA 77 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~-------~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~ 77 (161)
|.|. +|...+ ...+..||.+|+|+|+..+.. .+-.+...++.. .+.| +|+++||+|+.+..+....+.
T Consensus 93 PGh~--df~~~~-~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~~iIV~vNKmD~~~~~~~~~~~~ 168 (447)
T PLN00043 93 PGHR--DFIKNM-ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVKQMICCCNKMDATTPKYSKARYD 168 (447)
T ss_pred CCHH--HHHHHH-HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCCcEEEEEEcccCCchhhhHHHHH
Confidence 4443 477777 678899999999999987521 111222222222 4664 688899999863211111121
Q ss_pred HHHHHHhhhhccC----CCCceeEEeecCC
Q psy8220 78 QIFQTWIPYNSIQ----SIYSSPRFSSRSQ 103 (161)
Q Consensus 78 ~~~~~~~~~~~~~----~~~~~i~iSa~~~ 103 (161)
+..+.....+... ...+++++||.++
T Consensus 169 ~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G 198 (447)
T PLN00043 169 EIVKEVSSYLKKVGYNPDKIPFVPISGFEG 198 (447)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEEecccc
Confidence 2222222232211 1356899999998
No 219
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.28 E-value=8.9e-06 Score=56.65 Aligned_cols=85 Identities=24% Similarity=0.244 Sum_probs=61.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
.-...++|++++|.-+.++.+...+-+... ..+|+|-|++|+||++.. ++ +..+.|+... ...+++.+
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p~f~~~----~~k~vIgvVTK~DLaed~----dI-~~~~~~L~ea---Ga~~IF~~ 126 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPPGFLDI----GVKKVIGVVTKADLAEDA----DI-SLVKRWLREA---GAEPIFET 126 (148)
T ss_pred HHHhhccceeeeeecccCccccCCcccccc----cccceEEEEecccccchH----hH-HHHHHHHHHc---CCcceEEE
Confidence 456789999999999999988777766442 357799999999999651 11 2234444432 34567888
Q ss_pred eecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 99 SSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 99 Sa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
|+... .|+++|...|..
T Consensus 127 s~~d~-----------------~gv~~l~~~L~~ 143 (148)
T COG4917 127 SAVDN-----------------QGVEELVDYLAS 143 (148)
T ss_pred eccCc-----------------ccHHHHHHHHHh
Confidence 88776 899999888754
No 220
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.28 E-value=1.2e-05 Score=68.86 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
|..+. ..++..+|.+++|+|+..+.......+.+.... .+.|+++++||+|+...
T Consensus 92 f~~~~-~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 92 FSEDT-YRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RDTPIFTFINKLDRDGR 146 (526)
T ss_pred hHHHH-HHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cCCCEEEEEECCccccc
Confidence 44555 678899999999999998776555566665554 68999999999998654
No 221
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.27 E-value=4e-06 Score=60.36 Aligned_cols=95 Identities=14% Similarity=-0.033 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
...++......+|++++|.|..++.+-.. ..+.+.+... .+.|+++|.||.|+.... .... +....+.+.
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~--~v~~-~~~~~~~~~---- 134 (161)
T cd04117 62 YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR--QVGD-EQGNKLAKE---- 134 (161)
T ss_pred HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--CCCH-HHHHHHHHH----
Confidence 34444567789999999999887532111 1222222221 257999999999996541 0000 111222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.+.+.+.+||+++ .|++++.+.|.+
T Consensus 135 ~~~~~~e~Sa~~~-----------------~~v~~~f~~l~~ 159 (161)
T cd04117 135 YGMDFFETSACTN-----------------SNIKESFTRLTE 159 (161)
T ss_pred cCCEEEEEeCCCC-----------------CCHHHHHHHHHh
Confidence 2467889999998 899999888754
No 222
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.27 E-value=3.3e-06 Score=61.20 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=57.7
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccH---------HHHHHH
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSM---------AQIFQT 82 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~---------~~~~~~ 82 (161)
..++...+..+|++++|.|.+++.+-.+ ..+...+... .+.|+++|.||+|+.+.......+ ......
T Consensus 63 ~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~ 142 (175)
T cd01870 63 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 142 (175)
T ss_pred hhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHH
Confidence 3343356789999999999876532111 1122223221 378999999999986541000000 000011
Q ss_pred HhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 83 WIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 83 ~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+...+ ...+++.+||+++ .|+++|.+.|.+.+
T Consensus 143 ~~~~~---~~~~~~~~Sa~~~-----------------~~v~~lf~~l~~~~ 174 (175)
T cd01870 143 MANKI---GAFGYMECSAKTK-----------------EGVREVFEMATRAA 174 (175)
T ss_pred HHHHc---CCcEEEEeccccC-----------------cCHHHHHHHHHHHh
Confidence 11111 1236789999998 99999999887543
No 223
>KOG1191|consensus
Probab=98.26 E-value=2.9e-06 Score=70.82 Aligned_cols=103 Identities=26% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-----C------CCcEEEEeecCCCCCcccc
Q psy8220 4 VKPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-----P------GKKLVIVINKAGKPSTKIQ 72 (161)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-----~------~k~~ilVlNK~Dl~~~~~~ 72 (161)
+++-++++ .++. ++++++||+|++|+|+....++.+..+.+.+... . .+|.|++.||+|+.++.
T Consensus 331 ~~~iE~~g--I~rA-~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~-- 405 (531)
T KOG1191|consen 331 NDGIEALG--IERA-RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI-- 405 (531)
T ss_pred CChhHHHh--HHHH-HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc--
Confidence 45556665 4455 7899999999999999777777777777666542 1 27889999999998761
Q ss_pred cccHHHHHHHH--hhhhcc--CCCCce-eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 73 SGSMAQIFQTW--IPYNSI--QSIYSS-PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 73 ~~~~~~~~~~~--~~~~~~--~~~~~~-i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.. -.| ..+... ...+++ +.+|+.++ .|.+.|..+|.+..
T Consensus 406 -----~~-~~~~~~~~~~~~~~~~~~i~~~vs~~tk-----------------eg~~~L~~all~~~ 449 (531)
T KOG1191|consen 406 -----PE-MTKIPVVYPSAEGRSVFPIVVEVSCTTK-----------------EGCERLSTALLNIV 449 (531)
T ss_pred -----cc-ccCCceeccccccCcccceEEEeeechh-----------------hhHHHHHHHHHHHH
Confidence 00 111 011110 013444 45899998 89999998887765
No 224
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.26 E-value=6.9e-07 Score=65.02 Aligned_cols=43 Identities=26% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+++++.+|+.++ .|+++|.+.+.. + .++++|.++|||||||+
T Consensus 11 ~gy~v~~~S~~~~-----------------~g~~~l~~~l~~----k------~~vl~G~SGvGKSSLiN 53 (161)
T PF03193_consen 11 LGYPVFFISAKTG-----------------EGIEELKELLKG----K------TSVLLGQSGVGKSSLIN 53 (161)
T ss_dssp TTSEEEE-BTTTT-----------------TTHHHHHHHHTT----S------EEEEECSTTSSHHHHHH
T ss_pred cCCcEEEEeCCCC-----------------cCHHHHHHHhcC----C------EEEEECCCCCCHHHHHH
Confidence 4788999999988 899998877633 2 68899999999999985
No 225
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.25 E-value=3.3e-06 Score=61.04 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=58.5
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHh---CCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVV---GTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~---~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
..++...+..+|.+++|+|..++.+-. ...+...+. ...+.|+++|.||+|+.+.. .... +....+.+.+
T Consensus 63 ~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~--~~~~-~~~~~~~~~~--- 136 (168)
T cd04177 63 TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR--QVSR-EDGVSLSQQW--- 136 (168)
T ss_pred hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC--ccCH-HHHHHHHHHc---
Confidence 344456678899999999988753211 111222221 11478999999999986541 1011 1112222221
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
...+.+.+||+++ .|++++.+.+...
T Consensus 137 ~~~~~~~~SA~~~-----------------~~i~~~f~~i~~~ 162 (168)
T cd04177 137 GNVPFYETSARKR-----------------TNVDEVFIDLVRQ 162 (168)
T ss_pred CCceEEEeeCCCC-----------------CCHHHHHHHHHHH
Confidence 1257899999998 8999998887653
No 226
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.25 E-value=2e-06 Score=60.08 Aligned_cols=85 Identities=11% Similarity=-0.037 Sum_probs=50.2
Q ss_pred HHhhhccEEEEEEeCCCCCCC-------CcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 20 SVVEAADVILEVVDARDPMGT-------RCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~-------~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.....++.++.++|......+ ....+.... . .+.|+++|+||+|+... .........+.....
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~D~~~~--------~~~~~~~~~~~~~~~ 138 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-E-SNVPIILVGNKIDLRDA--------KLKTHVAFLFAKLNG 138 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-c-cCCcEEEEEEcccCCcc--------hhhHHHHHHHhhccC
Confidence 344566666666666544211 112222222 1 26899999999999764 111122222222235
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHH
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLG 131 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~ 131 (161)
.+.+++||.++ .|+.++.+.|.
T Consensus 139 ~~~~~~sa~~~-----------------~gv~~~~~~l~ 160 (161)
T TIGR00231 139 EPIIPLSAETG-----------------KNIDSAFKIVE 160 (161)
T ss_pred CceEEeecCCC-----------------CCHHHHHHHhh
Confidence 56899999998 89999988874
No 227
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.4e-05 Score=66.01 Aligned_cols=101 Identities=17% Similarity=0.032 Sum_probs=68.5
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.|.. +...+ ...+.-.|..++|+|+.+++..+..+-...+.-..-+..++|+||+|.+++ +.++...+
T Consensus 58 pgh~~--~i~~m-iag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--------~r~e~~i~ 126 (447)
T COG3276 58 PGHPD--FISNL-LAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--------ARIEQKIK 126 (447)
T ss_pred CCcHH--HHHHH-HhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--------HHHHHHHH
Confidence 44543 57777 578889999999999988877655443333322123555999999999876 22222222
Q ss_pred hhc---cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 86 YNS---IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 86 ~~~---~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+. .....+++..|+.++ .|+++|.+.|.+..
T Consensus 127 ~Il~~l~l~~~~i~~~s~~~g-----------------~GI~~Lk~~l~~L~ 161 (447)
T COG3276 127 QILADLSLANAKIFKTSAKTG-----------------RGIEELKNELIDLL 161 (447)
T ss_pred HHHhhcccccccccccccccC-----------------CCHHHHHHHHHHhh
Confidence 211 012446788899998 99999999999988
No 228
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.25 E-value=2.3e-06 Score=64.10 Aligned_cols=91 Identities=12% Similarity=-0.077 Sum_probs=57.2
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhCC-CCCcEEEEeecCCCCCcc-----------------cccccHHHH
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCK--VAEDLVVGT-PGKKLVIVINKAGKPSTK-----------------IQSGSMAQI 79 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~~-~~k~~ilVlNK~Dl~~~~-----------------~~~~~~~~~ 79 (161)
..+..||++++|.|.+++.+-... .+...+... .+.|+++|.||+||.... .+.... +.
T Consensus 83 ~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~-~e 161 (195)
T cd01873 83 FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP-ET 161 (195)
T ss_pred ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH-HH
Confidence 357899999999999876532211 233333321 368999999999986410 000111 12
Q ss_pred HHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 80 FQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
...|.+. .+.+.+.+||+++ .|++++.+.+.+
T Consensus 162 ~~~~a~~----~~~~~~E~SAkt~-----------------~~V~e~F~~~~~ 193 (195)
T cd01873 162 GRAVAKE----LGIPYYETSVVTQ-----------------FGVKDVFDNAIR 193 (195)
T ss_pred HHHHHHH----hCCEEEEcCCCCC-----------------CCHHHHHHHHHH
Confidence 2333322 2467889999999 899999887754
No 229
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.24 E-value=9.3e-07 Score=76.23 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=60.8
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
+..|+|+.|+||++-.. +..+--++.+ .+.|+++++|++|.+++. . ++--.+.+++..+.|+++.||.+
T Consensus 80 ~~~D~ivnVvDAtnLeR--nLyltlQLlE-~g~p~ilaLNm~D~A~~~--G------i~ID~~~L~~~LGvPVv~tvA~~ 148 (653)
T COG0370 80 GKPDLIVNVVDATNLER--NLYLTLQLLE-LGIPMILALNMIDEAKKR--G------IRIDIEKLSKLLGVPVVPTVAKR 148 (653)
T ss_pred CCCCEEEEEcccchHHH--HHHHHHHHHH-cCCCeEEEeccHhhHHhc--C------CcccHHHHHHHhCCCEEEEEeec
Confidence 56799999999987532 2223223444 689999999999987651 1 11111222222489999999999
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
+ .|+++|++.+.+..+.+
T Consensus 149 g-----------------~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 149 G-----------------EGLEELKRAIIELAESK 166 (653)
T ss_pred C-----------------CCHHHHHHHHHHhcccc
Confidence 9 89999999987766543
No 230
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.23 E-value=3.4e-06 Score=62.15 Aligned_cols=99 Identities=13% Similarity=-0.046 Sum_probs=60.9
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccc-------ccccHHHHHHHHh
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKI-------QSGSMAQIFQTWI 84 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~-------~~~~~~~~~~~~~ 84 (161)
+.++...+..||.+|+|.|.+++.+-.. ..+...+... .+.|+++|.||+||.+... ...-..+....|.
T Consensus 63 ~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 63 NRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 3333456789999999999987654222 1233334321 4689999999999965310 0000011122232
Q ss_pred hhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 85 PYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 85 ~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.. .+. +.+.+||+++ .|++++.+.+.+.+
T Consensus 143 ~~----~~~~~~~E~SAk~~-----------------~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQ----IGAAAYIECSSKTQ-----------------QNVKAVFDAAIKVV 172 (176)
T ss_pred HH----cCCCEEEECCCCcc-----------------cCHHHHHHHHHHHH
Confidence 22 234 4789999999 89999988887643
No 231
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=1.2e-05 Score=67.10 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=67.1
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPR 97 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 97 (161)
.+++..|.-.|+|+||+++... ..+.+..... .+-.+|-|+||+||..... +.+....+..-.......+.
T Consensus 94 SRSLAACEGalLvVDAsQGveA--QTlAN~YlAle~~LeIiPViNKIDLP~Adp------ervk~eIe~~iGid~~dav~ 165 (603)
T COG0481 94 SRSLAACEGALLVVDASQGVEA--QTLANVYLALENNLEIIPVLNKIDLPAADP------ERVKQEIEDIIGIDASDAVL 165 (603)
T ss_pred hhhHhhCCCcEEEEECccchHH--HHHHHHHHHHHcCcEEEEeeecccCCCCCH------HHHHHHHHHHhCCCcchhee
Confidence 5677788999999999998754 3344332211 4788999999999976511 22222222221011223689
Q ss_pred EeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc-CCC-CCceEEEEE
Q psy8220 98 FSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN-KDI-KTSITVGVV 148 (161)
Q Consensus 98 iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~-~~~-~~~~~v~vv 148 (161)
+||++| .|+++++++|.+..|. +++ ..+++..++
T Consensus 166 ~SAKtG-----------------~gI~~iLe~Iv~~iP~P~g~~~~pLkALif 201 (603)
T COG0481 166 VSAKTG-----------------IGIEDVLEAIVEKIPPPKGDPDAPLKALIF 201 (603)
T ss_pred EecccC-----------------CCHHHHHHHHHhhCCCCCCCCCCcceEEEE
Confidence 999999 9999999999888753 222 234554443
No 232
>PRK12740 elongation factor G; Reviewed
Probab=98.22 E-value=1.3e-05 Score=70.41 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+..+. ..++..+|.+++|+|+..+.......+...+.. .+.|+++|+||+|+...
T Consensus 73 ~~~~~-~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 FTGEV-ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK-YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHH-HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH-cCCCEEEEEECCCCCCC
Confidence 34444 678899999999999998766555555555554 57999999999998754
No 233
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.21 E-value=2e-05 Score=67.48 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCC
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPS 68 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~ 68 (161)
+|.|. .|..+. ++++..+|.+|+|+|+..+.......+.+.+.. .+.|+++++||+|+..
T Consensus 87 TPG~~--df~~~~-~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 87 TPGHE--DFSEDT-YRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCChh--hHHHHH-HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cCCCEEEEEECccccC
Confidence 35552 455556 678999999999999988766555566665554 5799999999999864
No 234
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.20 E-value=8e-06 Score=71.98 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=48.0
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+|.+. .|+.+. ..++..+|++++|+|+.++...++..+..++.. .+.|+++|+||+|+...
T Consensus 82 TPG~~--~~~~~~-~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 82 TPGHV--DFTVEV-ERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR-YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CCCCc--chhHHH-HHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH-cCCCEEEEEECCCCCCC
Confidence 35553 245555 789999999999999998877777777776665 68999999999999864
No 235
>PRK13351 elongation factor G; Reviewed
Probab=98.20 E-value=1.7e-05 Score=69.94 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
|..+. ..++..+|.+++|+|+..+.......+.+.+.. .+.|+++|+||+|+...
T Consensus 86 f~~~~-~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~-~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEV-ERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR-YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHH-HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCCCEEEEEECCCCCCC
Confidence 44444 688999999999999998776555555555554 57999999999998764
No 236
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.19 E-value=7.9e-06 Score=60.20 Aligned_cols=98 Identities=10% Similarity=-0.015 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccc--------ccccH-HHHHH
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKI--------QSGSM-AQIFQ 81 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~--------~~~~~-~~~~~ 81 (161)
+..+....+..||++|+|.|.+++.+-.. ..+...+.+. .+.|+++|.||+||.+... +.... .+...
T Consensus 62 ~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 62 YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHH
Confidence 34444456789999999999987654222 1233333321 4689999999999854200 00000 01112
Q ss_pred HHhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhcccccc-CHHHHHHHHHh
Q psy8220 82 TWIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCV-GAELLMLLLGN 132 (161)
Q Consensus 82 ~~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~-g~~~L~~~l~~ 132 (161)
.+.+. .+. +.+.+||+++ . |++++...+.+
T Consensus 142 ~~a~~----~~~~~~~E~SA~~~-----------------~~~v~~~F~~~~~ 173 (178)
T cd04131 142 AIAKQ----LGAEIYLECSAFTS-----------------EKSVRDIFHVATM 173 (178)
T ss_pred HHHHH----hCCCEEEECccCcC-----------------CcCHHHHHHHHHH
Confidence 22222 243 5788999998 7 48888777655
No 237
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.18 E-value=8.7e-06 Score=58.89 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=56.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccc--------cH-HHHHHHHhhh
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSG--------SM-AQIFQTWIPY 86 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~--------~~-~~~~~~~~~~ 86 (161)
......+|++++|.|..++.+-.+ ..+...+... .+.|+++|.||+|+.+...... .. .+....+...
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE 145 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 345778999999999987643211 1233333321 4799999999999865410000 00 0111122222
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+. ..+.+.+||+++ .|++++.+.+.+.
T Consensus 146 ~~---~~~~~e~Sa~~~-----------------~gi~~~f~~~~~~ 172 (174)
T cd04135 146 IG---AHCYVECSALTQ-----------------KGLKTVFDEAILA 172 (174)
T ss_pred cC---CCEEEEecCCcC-----------------CCHHHHHHHHHHH
Confidence 11 235788999999 9999998887653
No 238
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.1e-05 Score=62.91 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCC-CCc-HHH--HHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMG-TRC-KVA--EDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQ 81 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~-~~~-~~i--~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~ 81 (161)
|.|... |..+ ..-..--|-.|+|++|.+|-. .+. +++ ++.+ .-+.+|+|-||+||+.++ ...+..+
T Consensus 94 PGHe~L--MATM-LsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E----~AlE~y~ 163 (415)
T COG5257 94 PGHETL--MATM-LSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRE----RALENYE 163 (415)
T ss_pred CchHHH--HHHH-hcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHH----HHHHHHH
Confidence 454432 5555 455556788999999987632 111 222 2222 348899999999999872 0001111
Q ss_pred HHhhhhc--cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 82 TWIPYNS--IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 82 ~~~~~~~--~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
...++++ -..+.|++++||..+ .++|.|.++|.++.+.
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~-----------------~NIDal~e~i~~~Ipt 203 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHK-----------------ANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhc-----------------cCHHHHHHHHHHhCCC
Confidence 2222222 123568999999998 9999999999999864
No 239
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.15 E-value=1.1e-05 Score=60.87 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
|.... ...+..+|.+++|+|+..+.......+.+.+.. .+.|+++|+||+|++
T Consensus 84 f~~~~-~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~~~p~iiviNK~D~~ 136 (213)
T cd04167 84 FMDEV-AAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-EGLPIVLVINKIDRL 136 (213)
T ss_pred hHHHH-HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEEEEEECcccC
Confidence 33344 678899999999999987765444444444443 469999999999986
No 240
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.13 E-value=3e-05 Score=59.68 Aligned_cols=50 Identities=14% Similarity=-0.034 Sum_probs=37.6
Q ss_pred CcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 55 KKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 55 k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.|+++|+||+|+.+. +.... +. ...+.+++||.++ .|+++|.+.|.+.+
T Consensus 177 ~p~iiV~NK~Dl~~~--------~~~~~----~~--~~~~~~~~SA~~g-----------------~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLISI--------EELDL----LA--RQPNSVVISAEKG-----------------LNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCCH--------HHHHH----Hh--cCCCEEEEcCCCC-----------------CCHHHHHHHHHHHh
Confidence 589999999999876 33332 22 1345788999999 99999999988765
Q ss_pred h
Q psy8220 135 R 135 (161)
Q Consensus 135 ~ 135 (161)
.
T Consensus 226 ~ 226 (233)
T cd01896 226 G 226 (233)
T ss_pred C
Confidence 3
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.10 E-value=8.9e-06 Score=62.26 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=45.1
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
|.|.. |..+. ..++..||.+++|+|+..+...+...+.+.... .+.|+++|+||+|+.
T Consensus 81 PG~~~--f~~~~-~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~-~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVD--FSSEV-TAALRLCDGALVVVDAVEGVCVQTETVLRQALK-ERVKPVLVINKIDRL 138 (222)
T ss_pred CCccc--cHHHH-HHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH-cCCCEEEEEECCCcc
Confidence 55432 55566 688999999999999998877666666665554 578999999999985
No 242
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.09 E-value=1.2e-05 Score=65.05 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=52.0
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHH-HhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc---CCCCce
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDL-VVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI---QSIYSS 95 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~-l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 95 (161)
.....||++++|++...+ .+...... + ....-++|+||+|+.+.. ........+......+.. ....|+
T Consensus 165 ~i~~~aD~vlvv~~p~~g---d~iq~~k~gi---~E~aDIiVVNKaDl~~~~-~a~~~~~el~~~L~l~~~~~~~w~~pV 237 (332)
T PRK09435 165 AVAGMVDFFLLLQLPGAG---DELQGIKKGI---MELADLIVINKADGDNKT-AARRAAAEYRSALRLLRPKDPGWQPPV 237 (332)
T ss_pred HHHHhCCEEEEEecCCch---HHHHHHHhhh---hhhhheEEeehhcccchh-HHHHHHHHHHHHHhcccccccCCCCCE
Confidence 356789999999763222 22211111 1 123449999999998651 000000111211111110 012478
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+++||.++ .|+++|.+.|.++.+
T Consensus 238 i~vSA~~g-----------------~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 238 LTCSALEG-----------------EGIDEIWQAIEDHRA 260 (332)
T ss_pred EEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 99999999 899999999988764
No 243
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.05 E-value=1.3e-05 Score=59.95 Aligned_cols=99 Identities=14% Similarity=-0.022 Sum_probs=59.5
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCccccc----c-cHHHHHHHHhh----hhcc--
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQS----G-SMAQIFQTWIP----YNSI-- 89 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~----~-~~~~~~~~~~~----~~~~-- 89 (161)
.+.++|++|+|.|. +++..+..+.+.+.+ .++|+++|+||+|+....... . ...+.++...+ .+..
T Consensus 77 ~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~-~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 77 KFSEYDFFIIISST--RFSSNDVKLAKAIQC-MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CccCcCEEEEEeCC--CCCHHHHHHHHHHHH-hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 36789999998653 456666777777776 579999999999985421100 0 01111111111 1211
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
....+++.+|+... ..++...|.+.+...++..
T Consensus 154 ~~~p~v~~vS~~~~---------------~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDP---------------SDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCCh---------------hhcChHHHHHHHHHHhhHH
Confidence 01234677777621 1289999999998887754
No 244
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.03 E-value=5.1e-05 Score=63.40 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=72.4
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh------cc
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN------SI 89 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~------~~ 89 (161)
+. .+.++.+|-+|+++||.+++-.+...+.+-..+ .+-+.|+|+||+|-.... ..+.+......| .+
T Consensus 84 EV-ERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~-~gL~PIVVvNKiDrp~Ar-----p~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 84 EV-ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA-LGLKPIVVINKIDRPDAR-----PDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred hh-hhhhhhcceEEEEEEcccCCCCchhhhHHHHHH-cCCCcEEEEeCCCCCCCC-----HHHHHHHHHHHHHHhCCChh
Confidence 44 678899999999999999887777776654444 578889999999976541 112233322222 12
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+..+|+++-|+..|.- ..........+.-|.+.|.++.|.
T Consensus 157 QLdFPivYAS~~~G~a-------~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 157 QLDFPIVYASARNGTA-------SLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred hCCCcEEEeeccCcee-------ccCccccccchhHHHHHHHHhCCC
Confidence 3468999999998721 122223345688899999888764
No 245
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.03 E-value=2e-05 Score=58.19 Aligned_cols=94 Identities=13% Similarity=-0.041 Sum_probs=57.2
Q ss_pred HhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccc--------ccccHHHHHHHHhhhhcc
Q psy8220 21 VVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKI--------QSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~ 89 (161)
.+..+|.++++.|...+.+-.. ..+...+... ...|+++|.||+|+.+... +.... +....+.+.+.
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 146 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPI-QQGKRVAKEIG- 146 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCH-HHHHHHHHHhC-
Confidence 4678999999999876532111 1233333321 4689999999999854210 00000 11122222221
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+.+.+||+++ .|++++.+.+.+.+.
T Consensus 147 --~~~~~e~Sa~~~-----------------~~v~~~f~~l~~~~~ 173 (187)
T cd04129 147 --AKKYMECSALTG-----------------EGVDDVFEAATRAAL 173 (187)
T ss_pred --CcEEEEccCCCC-----------------CCHHHHHHHHHHHHh
Confidence 235788999999 999999999986553
No 246
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.01 E-value=4.3e-05 Score=58.47 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPS 68 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~ 68 (161)
.+..++...+..+|++|+|+|.+++.+-.. ..+...+... .+.|+++|.||+||..
T Consensus 61 ~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 61 YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 345555567889999999999987743211 1222222221 4689999999999965
No 247
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.01 E-value=2.7e-05 Score=56.18 Aligned_cols=91 Identities=7% Similarity=-0.070 Sum_probs=54.8
Q ss_pred HhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 21 VVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
....+|.+++|.|.++..+-.. ..+.+.+... .+.|+++|.||.|+.....+.... +..+.+.+.. ...+.+
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~-~~~~~~~~~~---~~~~~~ 137 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDD-ARARQLCADM---KRCSYY 137 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCH-HHHHHHHHHh---CCCcEE
Confidence 3467999999999987654222 2233333221 357999999999985310000010 1112222221 246788
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.+||+++ .|++++.+.+.+
T Consensus 138 e~SAk~~-----------------~~i~~~f~~~~~ 156 (158)
T cd04103 138 ETCATYG-----------------LNVERVFQEAAQ 156 (158)
T ss_pred EEecCCC-----------------CCHHHHHHHHHh
Confidence 9999999 899999887753
No 248
>KOG0076|consensus
Probab=98.00 E-value=1.5e-05 Score=58.35 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh--
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-- 85 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-- 85 (161)
+.++.+|..-...++.+++|+|+.++..-.+ ..+.+.+..+ .+.|+++..||.|+.+.. -...+.....
T Consensus 80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~-----~~~El~~~~~~~ 154 (197)
T KOG0076|consen 80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM-----EAAELDGVFGLA 154 (197)
T ss_pred HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh-----hHHHHHHHhhhh
Confidence 5688999899999999999999988542111 1122222221 589999999999987651 0011222111
Q ss_pred -hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 86 -YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 86 -~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
.+. ....++.++||.++ .|+++=.+++....+..
T Consensus 155 e~~~-~rd~~~~pvSal~g-----------------egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 155 ELIP-RRDNPFQPVSALTG-----------------EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcC-CccCccccchhhhc-----------------ccHHHHHHHHHHHHhhc
Confidence 111 12456899999999 88888877777665543
No 249
>KOG0075|consensus
Probab=97.98 E-value=0.00016 Score=51.83 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh--
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN-- 87 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~-- 87 (161)
.+.+|..--..+|+++||+|+.+|.. ....++..++.+. .+.|+++.-||+|+...- . -......+
T Consensus 78 frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL-------~-~~~li~rmgL 149 (186)
T KOG0075|consen 78 FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL-------S-KIALIERMGL 149 (186)
T ss_pred HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc-------c-HHHHHHHhCc
Confidence 46677778889999999999998642 2234555655442 479999999999986541 0 01111211
Q ss_pred ccCC--CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 88 SIQS--IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 88 ~~~~--~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.... ....+.+|++.. .+++.++.+|.+..+
T Consensus 150 ~sitdREvcC~siScke~-----------------~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 150 SSITDREVCCFSISCKEK-----------------VNIDITLDWLIEHSK 182 (186)
T ss_pred cccccceEEEEEEEEcCC-----------------ccHHHHHHHHHHHhh
Confidence 1111 223567888887 899999999987764
No 250
>KOG0092|consensus
Probab=97.94 E-value=2.1e-05 Score=58.41 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=57.5
Q ss_pred hhccEEEEEEeCCCCCCC-CcHHHHHHHhCCCC--CcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEe
Q psy8220 23 EAADVILEVVDARDPMGT-RCKVAEDLVVGTPG--KKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFS 99 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~-~~~~i~~~l~~~~~--k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS 99 (161)
..|+.+|+|.|.++..+- .-..+...|..... .-+.+|-||+||.... ..+..+ .. .+ .+..+.+.+..|
T Consensus 76 RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R--~V~~~e-a~---~y-Ae~~gll~~ETS 148 (200)
T KOG0092|consen 76 RGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR--EVEFEE-AQ---AY-AESQGLLFFETS 148 (200)
T ss_pred cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc--cccHHH-HH---HH-HHhcCCEEEEEe
Confidence 458899999999875431 11234444443222 3345588999998741 111111 11 12 222477889999
Q ss_pred ecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 100 SRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
|+++ .++++|...|.+.++..
T Consensus 149 AKTg-----------------~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 149 AKTG-----------------ENVNEIFQAIAEKLPCS 169 (200)
T ss_pred cccc-----------------cCHHHHHHHHHHhccCc
Confidence 9999 99999999998887653
No 251
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.92 E-value=5.2e-06 Score=69.00 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.8
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+++++++|.||||||||.+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLN 235 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLN 235 (454)
T ss_pred hcCceEEEECCCCCcHHHHHH
Confidence 567999999999999999964
No 252
>KOG0078|consensus
Probab=97.92 E-value=6.2e-05 Score=56.56 Aligned_cols=99 Identities=14% Similarity=-0.035 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
+..+++....+..|+-+++|.|.++..+-.+ ..+.+.+.+. .+.|.+||-||+|+..+. .... +.-+ .+.
T Consensus 72 erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R--~V~~-e~ge----~lA 144 (207)
T KOG0078|consen 72 ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR--QVSK-ERGE----ALA 144 (207)
T ss_pred hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc--cccH-HHHH----HHH
Confidence 5667777788899999999999987644222 2344445443 378999999999997641 1000 1112 222
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
...+.+.+..||+++ .++++....|....
T Consensus 145 ~e~G~~F~EtSAk~~-----------------~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 145 REYGIKFFETSAKTN-----------------FNIEEAFLSLARDI 173 (207)
T ss_pred HHhCCeEEEccccCC-----------------CCHHHHHHHHHHHH
Confidence 113677899999999 88887777766544
No 253
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.89 E-value=0.00011 Score=57.79 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
|..+. +..+..+|.+++|+|++.+.......+.++... .+.|+++++||+|+...
T Consensus 84 f~~~~-~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDT-YRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHH-HHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cCCCEEEEEECCccCCC
Confidence 44445 578899999999999988765544555555544 57999999999998654
No 254
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.88 E-value=5.6e-05 Score=58.54 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhh-hccEEEEEEeCCCCCCCCc-HHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 12 VVVQEIERSVVE-AADVILEVVDARDPMGTRC-KVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 12 ~~~~~~~~~~i~-~aDviL~VvD~~~~~~~~~-~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+.+.+++..+++ .+++||+|+|++..+...+ ..+.+.+.. .++|+++|+||+|..++
T Consensus 149 ~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 149 EQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-cCCcEEEEEECCCCCCc
Confidence 456666678888 5679999999988777666 577777766 68999999999999876
No 255
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.87 E-value=3.7e-05 Score=60.15 Aligned_cols=56 Identities=27% Similarity=0.289 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
.|..+. ..++..+|.+++|+|+..+.......+.+.+.. .+.|.++|+||+|+...
T Consensus 76 ~f~~~~-~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 76 DFVGET-RAALRAADAALVVVSAQSGVEVGTEKLWEFADE-AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHH-HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCCCEEEEEECCccCCC
Confidence 344555 788999999999999998765554555555554 57999999999998754
No 256
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.84 E-value=0.00015 Score=58.18 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=53.0
Q ss_pred hccEEEEEEeCCCCCCCC-c--HHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEee
Q psy8220 24 AADVILEVVDARDPMGTR-C--KVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSS 100 (161)
Q Consensus 24 ~aDviL~VvD~~~~~~~~-~--~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 100 (161)
-+++|||++|++..-+-. + ..+.+.+......|+++|+||+|+... +.++.....+..........+++
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~--------e~~~~~~~~~~~~~~~~~~~~~~ 318 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE--------EKLEEIEASVLEEGGEEPLKISA 318 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch--------hHHHHHHHHHHhhccccccceee
Confidence 588999999997542211 1 223333443236899999999999865 32333222232112223567777
Q ss_pred cCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 101 RSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
..+ .+.+.+.+.+...+
T Consensus 319 ~~~-----------------~~~d~~~~~v~~~a 335 (346)
T COG1084 319 TKG-----------------CGLDKLREEVRKTA 335 (346)
T ss_pred eeh-----------------hhHHHHHHHHHHHh
Confidence 776 78888888877664
No 257
>KOG0073|consensus
Probab=97.82 E-value=0.00015 Score=52.69 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHH--Hhh
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQT--WIP 85 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~ 85 (161)
..++..|....+++|.+++|+|.+++..-++ .++.+.+.+. .++|++++.||.|+.+. .+. +.+.. -..
T Consensus 71 ~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~-l~~----~~i~~~~~L~ 145 (185)
T KOG0073|consen 71 KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA-LSL----EEISKALDLE 145 (185)
T ss_pred chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc-cCH----HHHHHhhCHH
Confidence 3578899999999999999999987654222 2333434332 58999999999999754 111 11211 111
Q ss_pred hhccCCCCceeEEeecCC
Q psy8220 86 YNSIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~ 103 (161)
.+......+.+..||.++
T Consensus 146 ~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 146 ELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred HhccccCceEEEEecccc
Confidence 221123567888999998
No 258
>PTZ00416 elongation factor 2; Provisional
Probab=97.77 E-value=6.4e-05 Score=67.67 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=49.6
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
.|.|. +|..++ ..++..+|.+|+|+|+..++..+.+.+.+.+.. .+.|+|+++||+|+.
T Consensus 99 tPG~~--~f~~~~-~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~-~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHV--DFSSEV-TAALRVTDGALVVVDCVEGVCVQTETVLRQALQ-ERIRPVLFINKVDRA 157 (836)
T ss_pred CCCHH--hHHHHH-HHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH-cCCCEEEEEEChhhh
Confidence 35553 367777 789999999999999999988888888877766 678999999999986
No 259
>KOG1423|consensus
Probab=97.75 E-value=1e-05 Score=64.24 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=18.0
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
+...|+|||.||||||||++
T Consensus 71 k~L~vavIG~PNvGKStLtN 90 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTN 90 (379)
T ss_pred eEEEEEEEcCCCcchhhhhh
Confidence 45899999999999999975
No 260
>KOG0461|consensus
Probab=97.74 E-value=0.00066 Score=55.11 Aligned_cols=104 Identities=15% Similarity=0.038 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHH--HHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC-
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKV--AEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ- 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~--i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 90 (161)
.+.+ .....-.|+.++|+|+..+..++..+ +...+ ..+.+++|+||+|+.+++-+..++.+...+..+-++..
T Consensus 84 IRti-iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~---~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 84 IRTI-IGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL---LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHH-HhhhheeeeeeEEEehhcccccccchhhhhhhh---hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 5555 45666789999999998776544322 22222 24788999999999887322222221111222222211
Q ss_pred --CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 91 --SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 91 --~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
...|++++||+.|.- +..++.+|.+.|.+..
T Consensus 160 f~g~~PI~~vsa~~G~~-------------~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYF-------------KEEMIQELKEALESRI 192 (522)
T ss_pred cCCCCceeEEecCCCcc-------------chhHHHHHHHHHHHhh
Confidence 236899999998731 2367889999988654
No 261
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.72 E-value=0.00014 Score=54.75 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=38.4
Q ss_pred CCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 54 GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 54 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
++|.++++||+|+.+.. ..+. .........+. ...|++.+||+++ .|+++|++++.++
T Consensus 148 ~~a~iiv~NK~Dl~~~~--~~~~-~~~~~~l~~~~--~~~~i~~~Sa~~g-----------------~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAV--GFDV-EKMKADAKKIN--PEAEIILMSLKTG-----------------EGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccc--hhhH-HHHHHHHHHhC--CCCCEEEEECCCC-----------------CCHHHHHHHHHHh
Confidence 47889999999997531 0001 11122222222 3467999999999 9999999998765
No 262
>KOG0410|consensus
Probab=97.72 E-value=8.9e-05 Score=59.48 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=63.5
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCCCCC-------cEEEEeecCCCCCcccccccHH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGTPGK-------KLVIVINKAGKPSTKIQSGSMA 77 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~~~k-------~~ilVlNK~Dl~~~~~~~~~~~ 77 (161)
|.+.-.+|-..+ +.+.+||++|+|+|.+.|..+.. +.++.-+.+ -+. ..|=|-||+|..+..
T Consensus 241 P~~LvaAF~ATL--eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~~~------- 310 (410)
T KOG0410|consen 241 PIQLVAAFQATL--EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEEDE------- 310 (410)
T ss_pred cHHHHHHHHHHH--HHHhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhcccccccccc-------
Confidence 555555555554 78899999999999999975433 345555544 233 257788999976541
Q ss_pred HHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 78 QIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+ . .....+.+||++| .|+++|.+.+.....
T Consensus 311 --~e------~--E~n~~v~isaltg-----------------dgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 311 --VE------E--EKNLDVGISALTG-----------------DGLEELLKAEETKVA 341 (410)
T ss_pred --Cc------c--ccCCccccccccC-----------------ccHHHHHHHHHHHhh
Confidence 01 1 1233789999999 999999999876543
No 263
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.69 E-value=8.2e-05 Score=44.73 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=23.5
Q ss_pred hhccEEEEEEeCCCCCCCCc---HHHHHHHhCC-CCCcEEEEeecCC
Q psy8220 23 EAADVILEVVDARDPMGTRC---KVAEDLVVGT-PGKKLVIVINKAG 65 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~---~~i~~~l~~~-~~k~~ilVlNK~D 65 (161)
.-.++|+|++|++..=+..- ..+.+.++.. .++|++.|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 35789999999986533211 1233334432 4899999999998
No 264
>KOG1249|consensus
Probab=97.68 E-value=0.00014 Score=61.48 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=69.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh--hhccC---CCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP--YNSIQ---SIY 93 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~---~~~ 93 (161)
.++.++--++..|+|..+...+.++.+.+.+. .+..+++.||+|+.+...+...++. ...... ..... ...
T Consensus 105 ~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~---~~~~~v~~n~vdl~p~d~~~~~c~r-c~~l~~~~~vk~~~~en~~ 180 (572)
T KOG1249|consen 105 SEKQENPALARKVVDLSDEPCSIDPLLTNDVG---SPRLFVDGNKVDLLPKDSRPGYCQR-CHSLLHYGMIKAGGGENLN 180 (572)
T ss_pred hhhhhcccceEEeeecccCccccccchhhccc---CCceEeeccccccccccccchHHHH-HHhhcccceeecccccCCC
Confidence 45555645677888887776666666655543 3557999999999886211111111 111000 01100 011
Q ss_pred c------eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 94 S------SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 94 ~------~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
| +..+|++++ +|+++|.-.|.....-+ -.+..+|+.||||||+.+
T Consensus 181 p~~~f~~~~~~r~ktg-----------------yg~eeLI~~lvd~~df~-----Gdf~lvg~tnvgks~~fn 231 (572)
T KOG1249|consen 181 PDFDFDHVDLIRAKTG-----------------YGIEELIVMLVDIVDFR-----GDFYLVGATNVGKSTLFN 231 (572)
T ss_pred cccchhhhhhhhhhhc-----------------ccHHHHHHHhhheeecc-----CceeeeeecccchhhHHH
Confidence 1 234555555 99999988887654433 358889999999999873
No 265
>KOG0094|consensus
Probab=97.66 E-value=0.00042 Score=51.82 Aligned_cols=103 Identities=14% Similarity=0.033 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC-C-CCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 11 GVVVQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT-P-GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 11 ~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~-~-~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
+|..+-++-.-+.+|.+++.|.|.++-.+-. +.++.+...+. . +.-+++|-||.||+++. +-.. ++-...
T Consensus 81 QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr--qvs~----eEg~~k 154 (221)
T KOG0094|consen 81 QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR--QVSI----EEGERK 154 (221)
T ss_pred HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh--hhhH----HHHHHH
Confidence 3556666677788999999999998764322 23344444332 2 24567788999999871 1010 110011
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
-+ ..+...+..||+.| +++.+|.+.|...++..
T Consensus 155 Ak-el~a~f~etsak~g-----------------~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 155 AK-ELNAEFIETSAKAG-----------------ENVKQLFRRIAAALPGM 187 (221)
T ss_pred HH-HhCcEEEEecccCC-----------------CCHHHHHHHHHHhccCc
Confidence 11 12345678899998 99999999998887753
No 266
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.63 E-value=0.00028 Score=58.67 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=49.8
Q ss_pred HHHhh-hccEEEEEE-eCC------CCCCCCcHHHHHHHhCCCCCcEEEEeecCC-CCCcccccccHHHHHHHHhhhhcc
Q psy8220 19 RSVVE-AADVILEVV-DAR------DPMGTRCKVAEDLVVGTPGKKLVIVINKAG-KPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 19 ~~~i~-~aDviL~Vv-D~~------~~~~~~~~~i~~~l~~~~~k~~ilVlNK~D-l~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
++++. .+|+.|+|. |++ +.....++.+.+.+++ .++|+++|+||+| ..++ . ....+.+.+
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~-~~kPfiivlN~~dp~~~e--------t--~~l~~~l~e 206 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE-LNKPFIILLNSTHPYHPE--------T--EALRQELEE 206 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh-cCCCEEEEEECcCCCCch--------h--HHHHHHHHH
Confidence 67777 999999999 985 3333445566666776 7999999999999 4333 1 111222222
Q ss_pred CCCCceeEEeecCC
Q psy8220 90 QSIYSSPRFSSRSQ 103 (161)
Q Consensus 90 ~~~~~~i~iSa~~~ 103 (161)
..+.|++++|+..-
T Consensus 207 ky~vpvl~v~c~~l 220 (492)
T TIGR02836 207 KYDVPVLAMDVESM 220 (492)
T ss_pred HhCCceEEEEHHHc
Confidence 23578899998764
No 267
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.62 E-value=0.00018 Score=64.84 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=49.6
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
|.| .+|..+. ..++..+|.+|+|+|+..+...+.+.+.+.+.. .+.|+++++||+|..
T Consensus 106 PGh--~dF~~e~-~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~-~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 106 PGH--VDFSSEV-TAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCH--HHHHHHH-HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH-CCCCEEEEEECCccc
Confidence 555 3578888 789999999999999999988888887777766 689999999999987
No 268
>KOG1191|consensus
Probab=97.60 E-value=2.7e-05 Score=65.16 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=18.7
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..++.++|+|.||||||||.+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlN 286 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLN 286 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHH
Confidence 356999999999999999975
No 269
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.59 E-value=0.00041 Score=52.23 Aligned_cols=107 Identities=15% Similarity=0.085 Sum_probs=61.7
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
..++......+|.+++|.|.++..+-.. ..+...+... .+.|+++|.||+|+..... . .+. ..+... .+
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~---~-~~~-~~~~~~----~~ 142 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV---K-ARQ-ITFHRK----KN 142 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC---C-HHH-HHHHHH----cC
Confidence 3443455678999999999986543211 1122222211 3689999999999864310 0 011 111111 24
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecC
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECN 152 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pN 152 (161)
...+.+||+++ .|+++....|...+-.+ -++.+++-|=
T Consensus 143 ~~~~e~Sa~~~-----------------~~v~~~f~~ia~~l~~~-----p~~~~ldEp~ 180 (215)
T PTZ00132 143 LQYYDISAKSN-----------------YNFEKPFLWLARRLTND-----PNLVFVGAPA 180 (215)
T ss_pred CEEEEEeCCCC-----------------CCHHHHHHHHHHHHhhc-----ccceecCCcc
Confidence 56789999998 78888877776655433 2344555443
No 270
>KOG0084|consensus
Probab=97.52 E-value=0.0005 Score=51.34 Aligned_cols=100 Identities=16% Similarity=0.001 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
|..+.+.....+.|+-||+|.|.+...+-.+ ..+...+... .+.|.++|-||+|+.+.. .... +..+.+...
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~--~v~~-~~a~~fa~~-- 143 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR--VVST-EEAQEFADE-- 143 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe--ecCH-HHHHHHHHh--
Confidence 5667777778899999999999987533111 2233333332 357999999999997641 1111 111222222
Q ss_pred cCCCCc-eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 89 IQSIYS-SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 89 ~~~~~~-~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.| ....||+.. .++++....|...+.
T Consensus 144 --~~~~~f~ETSAK~~-----------------~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 144 --LGIPIFLETSAKDS-----------------TNVEDAFLTLAKELK 172 (205)
T ss_pred --cCCcceeecccCCc-----------------cCHHHHHHHHHHHHH
Confidence 3455 788899988 677777776665543
No 271
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.50 E-value=4.9e-05 Score=61.97 Aligned_cols=19 Identities=32% Similarity=0.102 Sum_probs=17.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
..+|++||+||||||||+.
T Consensus 189 ~~~ValvG~~NvGKSSLln 207 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFN 207 (351)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4899999999999999974
No 272
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.49 E-value=0.00059 Score=51.32 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=51.4
Q ss_pred ccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCC
Q psy8220 25 ADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQK 104 (161)
Q Consensus 25 aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~ 104 (161)
+|.++.|+|+........ .....+ ...-++++||+|+.+.- .... +....+...+. ...+++.+||+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~-~~~~qi----~~ad~~~~~k~d~~~~~--~~~~-~~~~~~~~~~~--~~~~i~~~Sa~~g- 181 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-KGGPGI----TRSDLLVINKIDLAPMV--GADL-GVMERDAKKMR--GEKPFIFTNLKTK- 181 (199)
T ss_pred hCcEEEEEEcchhhhhhh-hhHhHh----hhccEEEEEhhhccccc--cccH-HHHHHHHHHhC--CCCCEEEEECCCC-
Confidence 577888999875433111 000111 12338999999998520 0011 22233444433 3567899999999
Q ss_pred CcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 105 DAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.|+++|.+.|.+++.
T Consensus 182 ----------------~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 182 ----------------EGLDTVIDWIEHYAL 196 (199)
T ss_pred ----------------CCHHHHHHHHHhhcC
Confidence 999999999987653
No 273
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.47 E-value=0.00023 Score=48.35 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeec
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINK 63 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK 63 (161)
..+. .+.+..+|++++|+|+..+....+..+.+++. .++|+++|+||
T Consensus 70 ~~~~-~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 70 IRKF-LEQISKSDLIIYVVDASNPITEDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp HHHH-HHHHCTESEEEEEEETTSHSHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred HHHH-HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcC
Confidence 4455 56679999999999988754445566767674 57999999998
No 274
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.45 E-value=3.1e-05 Score=64.01 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=16.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..|++||+||||||||+.
T Consensus 160 adValVG~PNaGKSTLln 177 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIR 177 (390)
T ss_pred ccEEEEcCCCCCHHHHHH
Confidence 489999999999999975
No 275
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.44 E-value=0.00034 Score=62.19 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
.|.|.. |..+. ..++..+|.+|+|+|+..+...+...+...+.. .+.|.|+++||+|..
T Consensus 94 tPG~~d--f~~~~-~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~-~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 94 TPGHVD--FGGDV-TRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR-ERVKPVLFINKVDRL 152 (731)
T ss_pred CCCccC--hHHHH-HHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH-cCCCeEEEEECchhh
Confidence 365533 56666 789999999999999998887777777776544 467889999999976
No 276
>KOG0072|consensus
Probab=97.43 E-value=0.00086 Score=47.97 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCC--CCCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHH-Hhhhh
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPM--GTRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQT-WIPYN 87 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~--~~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~~ 87 (161)
.++-.|+.-.++.|.+|+|+|.++-. +..-.++...+.+. ++..++++.||.|...... ..+.... -...+
T Consensus 74 SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t----~~E~~~~L~l~~L 149 (182)
T KOG0072|consen 74 SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT----RSEVLKMLGLQKL 149 (182)
T ss_pred cccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh----HHHHHHHhChHHH
Confidence 46777888889999999999987542 22223334444332 4677888999999764310 0011111 01122
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
++ ....++.-||.++ .|++..+++|.+-++.
T Consensus 150 k~-r~~~Iv~tSA~kg-----------------~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 150 KD-RIWQIVKTSAVKG-----------------EGLDPAMDWLQRPLKS 180 (182)
T ss_pred hh-heeEEEeeccccc-----------------cCCcHHHHHHHHHHhc
Confidence 21 1234677888888 9999999999876643
No 277
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.42 E-value=9.2e-05 Score=59.30 Aligned_cols=20 Identities=25% Similarity=0.024 Sum_probs=16.9
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
..-++.|-|+||||||||..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~ 186 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVR 186 (346)
T ss_pred CCCeEEEecCCCCcHHHHHH
Confidence 44688899999999999964
No 278
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.42 E-value=0.0018 Score=50.91 Aligned_cols=108 Identities=14% Similarity=0.071 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCccccc--------ccHHHHH-
Q psy8220 11 GVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQS--------GSMAQIF- 80 (161)
Q Consensus 11 ~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~--------~~~~~~~- 80 (161)
+..+++..++.+.+.|++|+++|+.++.-.-|+.+.+.+... .++++++|+|-+|...+.+++ ..+.+.+
T Consensus 104 D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~ 183 (296)
T COG3596 104 DAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIE 183 (296)
T ss_pred hHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHH
Confidence 344677778999999999999999988766676655554432 359999999999975441111 0111111
Q ss_pred ---HHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 81 ---QTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 81 ---~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
+...+++. .-.|+++.+.... +|+++|...+.+.++..
T Consensus 184 ~k~~~~~~~~q--~V~pV~~~~~r~~-----------------wgl~~l~~ali~~lp~e 224 (296)
T COG3596 184 EKAEALGRLFQ--EVKPVVAVSGRLP-----------------WGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHHHh--hcCCeEEeccccC-----------------ccHHHHHHHHHHhCccc
Confidence 11222333 2345666665555 99999999998887743
No 279
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.40 E-value=6.8e-05 Score=62.93 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=18.6
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+++|+++|.||||||||++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN 221 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLN 221 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHH
Confidence 356899999999999999975
No 280
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0012 Score=54.54 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCC-------CCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcc-cccccHHHHHHHHh
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDP-------MGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTK-IQSGSMAQIFQTWI 84 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~-------~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~-~~~~~~~~~~~~~~ 84 (161)
|...+ ..-..+||+.++|+|++.+ ...+..+-.-+.+...-..+|+++||.|+++-. .+..++...+....
T Consensus 98 Fvknm-ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~ 176 (428)
T COG5256 98 FVKNM-ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLL 176 (428)
T ss_pred HHHHh-hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHH
Confidence 56666 4677899999999999988 333333322222221236788999999998631 01111112222222
Q ss_pred hhhccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 85 PYNSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 85 ~~~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+.+.-. ...+++|+||.+|.+..+.. ....=+.-..|+++|.++-
T Consensus 177 k~~G~~~~~v~FIPiSg~~G~Nl~~~s-----~~~pWY~GpTLleaLd~~~ 222 (428)
T COG5256 177 KMVGYNPKDVPFIPISGFKGDNLTKKS-----ENMPWYKGPTLLEALDQLE 222 (428)
T ss_pred HHcCCCccCCeEEecccccCCcccccC-----cCCcCccCChHHHHHhccC
Confidence 222100 13458999999984332211 0001122467888887443
No 281
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.39 E-value=0.0014 Score=52.24 Aligned_cols=90 Identities=13% Similarity=0.026 Sum_probs=47.8
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHH-HHHHHHhhhhccC---CCCcee
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMA-QIFQTWIPYNSIQ---SIYSSP 96 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~i 96 (161)
.++.+|.++++.+.. ... ++..+.....++|.++|+||+|+.+.. ..... .....-...+... ...+++
T Consensus 144 i~~~aD~i~vv~~~~---~~~--el~~~~~~l~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~v~ 216 (300)
T TIGR00750 144 IANMADTFVVVTIPG---TGD--DLQGIKAGLMEIADIYVVNKADGEGAT--NVTIARLMLALALEEIRRREDGWRPPVL 216 (300)
T ss_pred HHHhhceEEEEecCC---ccH--HHHHHHHHHhhhccEEEEEcccccchh--HHHHHHHHHHHHHhhccccccCCCCCEE
Confidence 455567766664422 111 222211111358899999999998651 00000 0000001111110 123589
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
++||.++ .|+++|.+.|.+..
T Consensus 217 ~iSA~~g-----------------~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 217 TTSAVEG-----------------RGIDELWDAIEEHK 237 (300)
T ss_pred EEEccCC-----------------CCHHHHHHHHHHHH
Confidence 9999999 89999998887754
No 282
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.38 E-value=0.00052 Score=55.28 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=41.2
Q ss_pred CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHH-HHH
Q psy8220 53 PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLML-LLG 131 (161)
Q Consensus 53 ~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~-~l~ 131 (161)
..+|+|+|+||+|+... .....+..... ...+++++||+.+ .++++|.+ .+.
T Consensus 213 t~KPvI~VlNK~Dl~~~--------~~~~~~l~~~~--~~~~iI~iSA~~e-----------------~~L~~L~~~~i~ 265 (318)
T cd01899 213 RSKPMVIAANKADIPDA--------ENNISKLRLKY--PDEIVVPTSAEAE-----------------LALRRAAKQGLI 265 (318)
T ss_pred cCCcEEEEEEHHHccCh--------HHHHHHHHhhC--CCCeEEEEeCccc-----------------ccHHHHHHhhHH
Confidence 35899999999998654 21122121111 2456899999998 89999998 599
Q ss_pred hHhhcC
Q psy8220 132 NYTRNK 137 (161)
Q Consensus 132 ~~~~~~ 137 (161)
+++|..
T Consensus 266 ~~lPe~ 271 (318)
T cd01899 266 KYDPGD 271 (318)
T ss_pred HhCCCC
Confidence 998764
No 283
>KOG0468|consensus
Probab=97.37 E-value=0.00033 Score=60.86 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=49.4
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCC
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGK 66 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl 66 (161)
+|.|.+ |+.+. ..++..+|.+++|+|+.++..-..+.++++..+ ...|+.+|+||+|.
T Consensus 204 TPGHVn--F~DE~-ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq-~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVN--FSDET-TASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ-NRLPIVVVINKVDR 261 (971)
T ss_pred CCCccc--chHHH-HHHhhhcceEEEEEEcccCceeeHHHHHHHHHh-ccCcEEEEEehhHH
Confidence 588887 78998 689999999999999999987666777776655 57999999999995
No 284
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.34 E-value=9.2e-05 Score=62.26 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.4
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+++|+++|.||||||||+.
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln 233 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLN 233 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 346899999999999999974
No 285
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.33 E-value=4.1e-05 Score=61.62 Aligned_cols=18 Identities=33% Similarity=0.202 Sum_probs=16.3
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.||+||+||+|||||+.
T Consensus 160 ADVGLVG~PNaGKSTlls 177 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLS 177 (369)
T ss_pred cccccccCCCCcHHHHHH
Confidence 479999999999999974
No 286
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.33 E-value=0.00032 Score=49.95 Aligned_cols=91 Identities=15% Similarity=0.068 Sum_probs=56.9
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-C-CCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-P-GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~-~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
...+..+|.+++|.|.+++.+-.. ..+...+... . +.|+++|.||.|+.... .... +....+... .+.+.
T Consensus 66 ~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~--~v~~-~~~~~~~~~----~~~~~ 138 (162)
T PF00071_consen 66 DIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER--EVSV-EEAQEFAKE----LGVPY 138 (162)
T ss_dssp HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS--SSCH-HHHHHHHHH----TTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeeeccccccccc--cchh-hHHHHHHHH----hCCEE
Confidence 456889999999999876532111 1233333221 3 58999999999987531 1111 122333332 24778
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+.+||+++ .|+.++...+.+.
T Consensus 139 ~e~Sa~~~-----------------~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 139 FEVSAKNG-----------------ENVKEIFQELIRK 159 (162)
T ss_dssp EEEBTTTT-----------------TTHHHHHHHHHHH
T ss_pred EEEECCCC-----------------CCHHHHHHHHHHH
Confidence 99999998 8888887776543
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00056 Score=55.55 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=54.6
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCc---HHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRC---KVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQ 81 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~---~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~ 81 (161)
+|.|. ++-+-++ -=..-||+.++++||+.+..++. ..+..++ .=+-+++++||+||++-. .+.+.+...
T Consensus 93 TPGHe--QYTRNMa-TGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~--e~~F~~I~~ 164 (431)
T COG2895 93 TPGHE--QYTRNMA-TGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYS--EEVFEAIVA 164 (431)
T ss_pred CCcHH--HHhhhhh-cccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccC--HHHHHHHHH
Confidence 35543 2444452 34568999999999999876543 2344433 236788899999999741 122222222
Q ss_pred HHhhhhccC--CCCceeEEeecCCCCc
Q psy8220 82 TWIPYNSIQ--SIYSSPRFSSRSQKDA 106 (161)
Q Consensus 82 ~~~~~~~~~--~~~~~i~iSa~~~~~~ 106 (161)
.+..+.... .....||+||..|.+.
T Consensus 165 dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 165 DYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred HHHHHHHHcCCCcceEEechhccCCcc
Confidence 222222211 1224799999998543
No 288
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.31 E-value=6e-05 Score=61.08 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=16.3
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-+|++||+||||||||+.
T Consensus 159 adVglVG~PNaGKSTLln 176 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLIS 176 (335)
T ss_pred CCEEEEcCCCCCHHHHHH
Confidence 489999999999999974
No 289
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.29 E-value=0.00065 Score=60.37 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=45.1
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCC
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPS 68 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~ 68 (161)
|.|.. |..+. ..++..+|.+|+|+|+..++..+...+.+.+.. .+.|.++++||+|...
T Consensus 94 PG~~~--f~~~~-~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~-~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 94 PGHVD--FGGDV-TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK-ENVKPVLFINKVDRLI 152 (720)
T ss_pred CCccc--cHHHH-HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH-cCCCEEEEEEChhccc
Confidence 55432 34455 688999999999999998877777776666544 5788899999999864
No 290
>KOG0093|consensus
Probab=97.27 E-value=0.00073 Score=48.48 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
|.++++.-..+..|+-+|++.|.++..+-. -+.+...+..- .+.|+|+|.||||+-++. .... +......+
T Consensus 81 EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eR--vis~-e~g~~l~~--- 154 (193)
T KOG0093|consen 81 ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSER--VISH-ERGRQLAD--- 154 (193)
T ss_pred hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccce--eeeH-HHHHHHHH---
Confidence 568888777789999999999987643210 11222222221 478999999999997651 1110 11111122
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+.++..+.-||+.. .++..+.+.+....
T Consensus 155 -~LGfefFEtSaK~N-----------------inVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 155 -QLGFEFFETSAKEN-----------------INVKQVFERLVDII 182 (193)
T ss_pred -HhChHHhhhccccc-----------------ccHHHHHHHHHHHH
Confidence 23566777888877 88888888776654
No 291
>KOG1144|consensus
Probab=97.23 E-value=0.0015 Score=57.56 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
.+-..-||++|+|+|...++..+..+-+++|+. .+.|+|+++||+|-+
T Consensus 558 srgsslC~~aIlvvdImhGlepqtiESi~lLR~-rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 558 SRGSSLCDLAILVVDIMHGLEPQTIESINLLRM-RKTPFIVALNKIDRL 605 (1064)
T ss_pred hccccccceEEEEeehhccCCcchhHHHHHHHh-cCCCeEEeehhhhhh
Confidence 456678999999999999987777666777876 689999999999953
No 292
>KOG0070|consensus
Probab=97.21 E-value=0.00085 Score=49.50 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh-
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY- 86 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~- 86 (161)
+.++.+|..-....+.+|||+|+.+... +.-.++...+... .+.|+++..||.|+... . .. ..+......
T Consensus 72 ~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a-l---s~-~ei~~~L~l~ 146 (181)
T KOG0070|consen 72 EKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA-L---SA-AEITNKLGLH 146 (181)
T ss_pred cccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc-C---CH-HHHHhHhhhh
Confidence 3467788888899999999999987642 2223444545442 36899999999998654 0 00 112222211
Q ss_pred -hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 87 -NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 87 -~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.. ...-+-..+|.+| .|+.+-+++|.+.+.
T Consensus 147 ~l~~-~~w~iq~~~a~~G-----------------~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 147 SLRS-RNWHIQSTCAISG-----------------EGLYEGLDWLSNNLK 178 (181)
T ss_pred ccCC-CCcEEeecccccc-----------------ccHHHHHHHHHHHHh
Confidence 120 1222456677777 899988888877654
No 293
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.20 E-value=9.8e-05 Score=61.65 Aligned_cols=18 Identities=33% Similarity=0.253 Sum_probs=16.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..|++||+||||||||+.
T Consensus 159 adVglVG~pNaGKSTLLn 176 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLS 176 (424)
T ss_pred CcEEEEcCCCCCHHHHHH
Confidence 389999999999999974
No 294
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.18 E-value=0.00011 Score=62.44 Aligned_cols=18 Identities=28% Similarity=0.110 Sum_probs=16.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.+|++||+||||||||+.
T Consensus 160 adV~LVG~PNAGKSTLln 177 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLIS 177 (500)
T ss_pred ceEEEEEcCCCCHHHHHH
Confidence 689999999999999974
No 295
>PRK15494 era GTPase Era; Provisional
Probab=97.16 E-value=0.00013 Score=59.16 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=17.7
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..+|++||.||||||||+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin 70 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLN 70 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHH
Confidence 34799999999999999974
No 296
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.15 E-value=0.00082 Score=53.40 Aligned_cols=56 Identities=13% Similarity=0.009 Sum_probs=38.2
Q ss_pred CcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 55 KKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 55 k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+-++|+||+|+++.. . ..++...+.++.. ...+++++||+++ .|+++|.++|.+.
T Consensus 231 ~ADIVVLNKiDLl~~~----~--~dle~~~~~lr~lnp~a~I~~vSA~tG-----------------eGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYL----N--FDVEKCIACAREVNPEIEIILISATSG-----------------EGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCccc----H--HHHHHHHHHHHhhCCCCcEEEEECCCC-----------------CCHHHHHHHHHHh
Confidence 4559999999998731 0 1223333333211 3567999999999 9999999999763
No 297
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.14 E-value=0.00023 Score=57.00 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=24.8
Q ss_pred HHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 124 ELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 124 ~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+|.+.|.++-... ....+|+++|.|||||||+++
T Consensus 22 ~~l~~~l~~l~~~~--~~~~rIllvGktGVGKSSliN 56 (313)
T TIGR00991 22 TKLLELLGKLKEED--VSSLTILVMGKGGVGKSSTVN 56 (313)
T ss_pred HHHHHHHHhccccc--ccceEEEEECCCCCCHHHHHH
Confidence 45666655543222 245899999999999999974
No 298
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.11 E-value=0.00031 Score=52.35 Aligned_cols=19 Identities=32% Similarity=0.088 Sum_probs=17.0
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
-.+|+++|.||||||||+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~ 59 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFN 59 (204)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3799999999999999974
No 299
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.08 E-value=0.00016 Score=58.55 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=16.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-+|++||+||||||||+.
T Consensus 158 adV~lvG~pnaGKSTLl~ 175 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLIS 175 (329)
T ss_pred ccEEEEcCCCCCHHHHHH
Confidence 589999999999999974
No 300
>PRK11058 GTPase HflX; Provisional
Probab=97.07 E-value=0.00021 Score=59.77 Aligned_cols=18 Identities=33% Similarity=0.124 Sum_probs=16.3
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.+|++||+||||||||++
T Consensus 198 p~ValVG~~NaGKSSLlN 215 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFN 215 (426)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 489999999999999974
No 301
>KOG1532|consensus
Probab=97.03 E-value=0.0071 Score=47.85 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=50.7
Q ss_pred cEEEEEEeCCCCCCC--C-cH--HHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc-----------
Q psy8220 26 DVILEVVDARDPMGT--R-CK--VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI----------- 89 (161)
Q Consensus 26 DviL~VvD~~~~~~~--~-~~--~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~----------- 89 (161)
-+|++|+|....-.. . .. -....+-+ ...|+|+|+||+|+.+. +...+|...+..
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-tklp~ivvfNK~Dv~d~--------~fa~eWm~DfE~FqeAl~~~~~~ 219 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYK-TKLPFIVVFNKTDVSDS--------EFALEWMTDFEAFQEALNEAESS 219 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHHHh-ccCCeEEEEeccccccc--------HHHHHHHHHHHHHHHHHHhhccc
Confidence 478899996432111 1 11 11233333 57899999999999876 334455432210
Q ss_pred ----------------CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 90 ----------------QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 90 ----------------~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.....++.+||.+| .|.++++.++.+.+
T Consensus 220 y~s~l~~SmSL~leeFY~~lrtv~VSs~tG-----------------~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 220 YMSNLTRSMSLMLEEFYRSLRTVGVSSVTG-----------------EGFDDFFTAVDESV 263 (366)
T ss_pred hhHHhhhhHHHHHHHHHhhCceEEEecccC-----------------CcHHHHHHHHHHHH
Confidence 01224678899998 89888888876544
No 302
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.03 E-value=0.00016 Score=57.91 Aligned_cols=18 Identities=28% Similarity=0.117 Sum_probs=16.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.+|++||+||||||||..
T Consensus 64 a~v~lVGfPsvGKStLL~ 81 (365)
T COG1163 64 ATVALVGFPSVGKSTLLN 81 (365)
T ss_pred eEEEEEcCCCccHHHHHH
Confidence 799999999999999964
No 303
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.97 E-value=0.0048 Score=45.83 Aligned_cols=100 Identities=6% Similarity=0.027 Sum_probs=60.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCC----CCcEEEEeecCCCCCcccccccHHHHH----HHHhhhhccC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTP----GKKLVIVINKAGKPSTKIQSGSMAQIF----QTWIPYNSIQ 90 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~----~k~~ilVlNK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~ 90 (161)
.......|++|+|+|+.. ++..+..+.+.+.+.. -+++++|+|++|..... .+.+.+ ..+...+. .
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~----~~~~~~~~~~~~l~~l~~-~ 151 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG----TLEDYLENSCEALKRLLE-K 151 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC----cHHHHHHhccHHHHHHHH-H
Confidence 455678999999999987 6666666666665421 26889999999976541 111100 11111111 1
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
-+...+.|+.... +...+.++++|++.|.+.++.
T Consensus 152 c~~r~~~f~~~~~------------~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGGRYVAFNNKAK------------GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCCeEEEEeCCCC------------cchhHHHHHHHHHHHHHHHHh
Confidence 1223456665431 112347899999999998876
No 304
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.95 E-value=0.0014 Score=49.20 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=38.1
Q ss_pred CCcchHHHHHHHHHHHhhhc-cEEEEEEeCCCCCCCCcH---HHHHHHhC---C-CCCcEEEEeecCCCCCc
Q psy8220 6 PMEMRGVVVQEIERSVVEAA-DVILEVVDARDPMGTRCK---VAEDLVVG---T-PGKKLVIVINKAGKPST 69 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~a-DviL~VvD~~~~~~~~~~---~i~~~l~~---~-~~k~~ilVlNK~Dl~~~ 69 (161)
|.|.. ++..+...+..+ +.+++|+|+......... .+...+.. . .+.|+++|.||+|+...
T Consensus 56 pG~~~---~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 56 PGHPK---LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CCCHH---HHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 55443 344446777888 999999999876321111 11122211 0 37999999999998653
No 305
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.93 E-value=0.0046 Score=46.60 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---------------------CCCCcEEEEeecCCCCCccc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---------------------TPGKKLVIVINKAGKPSTKI 71 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---------------------~~~k~~ilVlNK~Dl~~~~~ 71 (161)
++.++...+..+|++|+|.|.+++.+-.. ..+...+.. ..+.|+++|.||+|+.++..
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 45555567889999999999988743211 122222211 02579999999999976410
Q ss_pred ccccHHHHHHHHhhhhccCCCCceeEEeecCC
Q psy8220 72 QSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~ 103 (161)
.+.. ..+.. ...+.++.+.|.+.+++...
T Consensus 147 ~~~~--~~~~~-~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 147 SSGN--LVLTA-RGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred cchH--HHhhH-hhhHHHhcCCceEEEecCCc
Confidence 0100 11111 11222224677788887754
No 306
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.80 E-value=0.0032 Score=50.66 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=39.2
Q ss_pred CCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 54 GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 54 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
-+|.++|+||+|+.+. +.... +. .....+++||..+ +|+++|.+.|...
T Consensus 239 Y~p~l~v~NKiD~~~~--------e~~~~----l~--~~~~~v~isa~~~-----------------~nld~L~e~i~~~ 287 (365)
T COG1163 239 YKPALYVVNKIDLPGL--------EELER----LA--RKPNSVPISAKKG-----------------INLDELKERIWDV 287 (365)
T ss_pred eeeeEEEEecccccCH--------HHHHH----HH--hccceEEEecccC-----------------CCHHHHHHHHHHh
Confidence 4799999999999875 33332 22 1236899999998 9999999999887
Q ss_pred hh
Q psy8220 134 TR 135 (161)
Q Consensus 134 ~~ 135 (161)
+.
T Consensus 288 L~ 289 (365)
T COG1163 288 LG 289 (365)
T ss_pred hC
Confidence 63
No 307
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.01 Score=47.36 Aligned_cols=55 Identities=20% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcE-EEEeecCCCCCc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKL-VIVINKAGKPST 69 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~-ilVlNK~Dl~~~ 69 (161)
+.+-+ .--..+.|-.|+|+-|.+++-.+..+=.-+.++ -+.|. ++++||+|+++.
T Consensus 88 YvKNM-ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq-vGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 88 YVKNM-ITGAAQMDGAILVVAATDGPMPQTREHILLARQ-VGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred HHHHH-hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh-cCCcEEEEEEecccccCc
Confidence 44444 345568899999999888765544321111122 46765 455899999985
No 308
>KOG1490|consensus
Probab=96.75 E-value=0.0014 Score=55.38 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=18.1
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+-+..++|+|||||||++.
T Consensus 166 p~trTlllcG~PNVGKSSf~~ 186 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNN 186 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcc
Confidence 445789999999999999875
No 309
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.75 E-value=0.0039 Score=49.22 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=34.3
Q ss_pred hccEEEEEEeCCC-CCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 24 AADVILEVVDARD-PMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 24 ~aDviL~VvD~~~-~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
++|++++++|+.. ++...|..+.+.+.. +.|+++|+||+|+...
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~~--~v~vi~VinK~D~l~~ 158 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLSK--RVNIIPVIAKADTLTP 158 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHhc--cCCEEEEEECCCcCCH
Confidence 5899999999864 455556666666653 6899999999999764
No 310
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.75 E-value=0.0039 Score=44.72 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=34.3
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCcH-HHHHHHhCCCCCcEEEEeecC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKA 64 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~~-~i~~~l~~~~~k~~ilVlNK~ 64 (161)
+++.+.+..+|++|+|+|+..+....+. .+.+.... ....+++|+||+
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~-~~~~~i~V~nk~ 168 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP-DKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT-TCSSEEEEEE-G
T ss_pred HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC-CCCeEEEEEcCC
Confidence 5557778999999999999987765443 33444433 466799999995
No 311
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.59 E-value=0.0015 Score=44.15 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC----CCCcEEEEeecCC
Q psy8220 20 SVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT----PGKKLVIVINKAG 65 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~----~~k~~ilVlNK~D 65 (161)
..+..+|++++|.|.+++.+-.. ..+...+... .+.|+++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 34889999999999987642211 1122222211 3589999999998
No 312
>KOG1489|consensus
Probab=96.58 E-value=0.00054 Score=54.83 Aligned_cols=18 Identities=33% Similarity=0.165 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.||.||+||.|||||..
T Consensus 197 advGLVG~PNAGKSTLL~ 214 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLN 214 (366)
T ss_pred cccceecCCCCcHHHHHH
Confidence 479999999999999864
No 313
>KOG1490|consensus
Probab=96.57 E-value=0.0075 Score=51.16 Aligned_cols=73 Identities=14% Similarity=0.060 Sum_probs=42.3
Q ss_pred EEEEEEeCCCCCCCCcH---HHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 27 VILEVVDARDPMGTRCK---VAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 27 viL~VvD~~~~~~~~~~---~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
.|||+.|.+.-=+..-. .+...+... .++|.|+|+||+|+.... .+.+.-++..+.+......+++..|+.+
T Consensus 250 aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e----dL~~~~~~ll~~~~~~~~v~v~~tS~~~ 325 (620)
T KOG1490|consen 250 AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE----DLDQKNQELLQTIIDDGNVKVVQTSCVQ 325 (620)
T ss_pred hheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc----ccCHHHHHHHHHHHhccCceEEEecccc
Confidence 48999998754332211 122223322 489999999999987652 1112222333333322346788889888
Q ss_pred C
Q psy8220 103 Q 103 (161)
Q Consensus 103 ~ 103 (161)
.
T Consensus 326 e 326 (620)
T KOG1490|consen 326 E 326 (620)
T ss_pred h
Confidence 7
No 314
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.55 E-value=0.006 Score=50.66 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=35.2
Q ss_pred CCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHH-HHHHHHh
Q psy8220 54 GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAEL-LMLLLGN 132 (161)
Q Consensus 54 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~-L~~~l~~ 132 (161)
.+|+|+|+||+|+.... +.+....+. .+.+++++||..+ .++++ |.+.+.+
T Consensus 217 ~KPvI~VlNK~D~~~~~-------~~l~~i~~~----~~~~vvpISA~~e-----------------~~l~~~l~~~i~~ 268 (396)
T PRK09602 217 SKPMVIAANKADLPPAE-------ENIERLKEE----KYYIVVPTSAEAE-----------------LALRRAAKAGLID 268 (396)
T ss_pred CCCEEEEEEchhcccch-------HHHHHHHhc----CCCcEEEEcchhh-----------------hhHHHHHHHhHHh
Confidence 59999999999986431 112222222 2456899999988 66666 5566655
Q ss_pred Hhhc
Q psy8220 133 YTRN 136 (161)
Q Consensus 133 ~~~~ 136 (161)
++|.
T Consensus 269 ~lp~ 272 (396)
T PRK09602 269 YIPG 272 (396)
T ss_pred hCCC
Confidence 5543
No 315
>KOG0095|consensus
Probab=96.54 E-value=0.015 Score=41.91 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCCC--CCcEEEEeecCCCCCc
Q psy8220 11 GVVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGTP--GKKLVIVINKAGKPST 69 (161)
Q Consensus 11 ~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~~--~k~~ilVlNK~Dl~~~ 69 (161)
.|..+.+...-...|+.+++|-|.+..++-.+ +++...+.+-. ..-.|+|-||+|+.+.
T Consensus 66 qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 66 QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence 36677776777789999999999876554322 44444443311 2345889999999765
No 316
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.54 E-value=0.007 Score=46.82 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=48.2
Q ss_pred HHHHHHHHhhh--ccEEEEEEeCCCCCCCCcHHHHHHH------hCCCCCcEEEEeecCCCCCccc--cc------ccHH
Q psy8220 14 VQEIERSVVEA--ADVILEVVDARDPMGTRCKVAEDLV------VGTPGKKLVIVINKAGKPSTKI--QS------GSMA 77 (161)
Q Consensus 14 ~~~~~~~~i~~--aDviL~VvD~~~~~~~~~~~i~~~l------~~~~~k~~ilVlNK~Dl~~~~~--~~------~~~~ 77 (161)
+..+ .+.+.+ .=++++++|+...... ...+...+ .+ .+.|.|.|+||+|+.++.. .. ..+.
T Consensus 111 ~~~i-~~~L~~~~~~~~v~LvD~~~~~~~-~~f~s~~L~s~s~~~~-~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~ 187 (238)
T PF03029_consen 111 GRKI-VERLQKNGRLVVVFLVDSSFCSDP-SKFVSSLLLSLSIMLR-LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLE 187 (238)
T ss_dssp HHHH-HHTSSS----EEEEEE-GGG-SSH-HHHHHHHHHHHHHHHH-HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHH
T ss_pred HHHH-HHHHhhhcceEEEEEEecccccCh-hhHHHHHHHHHHHHhh-CCCCEEEeeeccCcccchhHHHHHHhcChHHHH
Confidence 4444 344442 4478999998754321 11122211 11 3799999999999988310 00 0000
Q ss_pred --------HHHHHHhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 78 --------QIFQTWIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 78 --------~~~~~~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.......+.+...... +++++|+.++ .|+++|...+.+..
T Consensus 188 ~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~-----------------~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 188 DLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDG-----------------EGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTT-----------------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCCh-----------------HHHHHHHHHHHHHh
Confidence 0001111122211223 5789999998 99999999987654
No 317
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0017 Score=51.65 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
+...+||-|.|++||||||-
T Consensus 50 ~a~viGITG~PGaGKSTli~ 69 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIE 69 (323)
T ss_pred CCcEEEecCCCCCchHHHHH
Confidence 34799999999999999973
No 318
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.011 Score=52.30 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=52.2
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+|.|. .|..+. .+++.-+|-++.|+|+..+...+.+.+.++..+ .+.|.++++||.|....
T Consensus 83 TPGHV--DFt~EV-~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~-~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 83 TPGHV--DFTIEV-ERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK-YGVPRILFVNKMDRLGA 143 (697)
T ss_pred CCCcc--ccHHHH-HHHHHhhcceEEEEECCCCeeecHHHHHHHHhh-cCCCeEEEEECcccccc
Confidence 46665 367788 789999999999999999999898998888776 68999999999997654
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.42 E-value=0.016 Score=45.42 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=47.4
Q ss_pred HHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC-C--CCc
Q psy8220 20 SVVEAADVILEVVDARDPMGTRC--KVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ-S--IYS 94 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~ 94 (161)
+..+-||.+++|+-+-.+..-+- .-+.+ ..=|+|+||.|..... .....+.......... . ..|
T Consensus 138 ~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------iaDi~vVNKaD~~gA~----~~~~~l~~~l~l~~~~~~~W~pp 206 (266)
T PF03308_consen 138 DIADMADTVVLVLVPGLGDEIQAIKAGIME-------IADIFVVNKADRPGAD----RTVRDLRSMLHLLREREDGWRPP 206 (266)
T ss_dssp HHHTTSSEEEEEEESSTCCCCCTB-TTHHH-------H-SEEEEE--SHHHHH----HHHHHHHHHHHHCSTSCTSB--E
T ss_pred HHHHhcCeEEEEecCCCccHHHHHhhhhhh-------hccEEEEeCCChHHHH----HHHHHHHHHHhhccccccCCCCC
Confidence 55678999999986543322111 12222 2339999999954331 0001122222222211 1 236
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
++..||.++ .|+++|.+.|.++.
T Consensus 207 V~~tsA~~~-----------------~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 207 VLKTSALEG-----------------EGIDELWEAIDEHR 229 (266)
T ss_dssp EEEEBTTTT-----------------BSHHHHHHHHHHHH
T ss_pred EEEEEeCCC-----------------CCHHHHHHHHHHHH
Confidence 888999988 99999999998764
No 320
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.42 E-value=0.0062 Score=45.65 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=37.1
Q ss_pred cEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 56 KLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 56 ~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.=++|+||.||++.-.. .. +....-...+. ...|+++.|++++ .|++++.+++...
T Consensus 144 aDllVInK~DLa~~v~~--dl-evm~~da~~~n--p~~~ii~~n~ktg-----------------~G~~~~~~~i~~~ 199 (202)
T COG0378 144 ADLLVINKTDLAPYVGA--DL-EVMARDAKEVN--PEAPIIFTNLKTG-----------------EGLDEWLRFIEPQ 199 (202)
T ss_pred eeEEEEehHHhHHHhCc--cH-HHHHHHHHHhC--CCCCEEEEeCCCC-----------------cCHHHHHHHHHhh
Confidence 45899999999874100 00 11122222333 4678999999999 9999999988654
No 321
>KOG0466|consensus
Probab=96.38 E-value=0.016 Score=46.61 Aligned_cols=103 Identities=9% Similarity=0.047 Sum_probs=60.9
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCC----CCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDP----MGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQ 81 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~----~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~ 81 (161)
|.|.-. |..+ ..-..-.|..|+++-+.++ .++......+.. .-+.++++-||+||..+. +..+.-+
T Consensus 133 PGHDiL--MaTM-LnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~e~----~A~eq~e 202 (466)
T KOG0466|consen 133 PGHDIL--MATM-LNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIKES----QALEQHE 202 (466)
T ss_pred CchHHH--HHHH-hcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhhHH----HHHHHHH
Confidence 444432 4454 3444456777788877543 222222222222 237788999999998762 0001112
Q ss_pred HHhhhhc--cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 82 TWIPYNS--IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 82 ~~~~~~~--~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
....++. ...+.|++++||.-+ ++++.+.+.|.+..|
T Consensus 203 ~I~kFi~~t~ae~aPiiPisAQlk-----------------yNId~v~eyivkkIP 241 (466)
T KOG0466|consen 203 QIQKFIQGTVAEGAPIIPISAQLK-----------------YNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHhccccCCCceeeehhhhc-----------------cChHHHHHHHHhcCC
Confidence 2222332 124679999999888 999999999988775
No 322
>KOG0410|consensus
Probab=96.36 E-value=0.0011 Score=53.38 Aligned_cols=18 Identities=28% Similarity=0.134 Sum_probs=16.5
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.|++|||+|.||||||.
T Consensus 179 pviavVGYTNaGKsTLik 196 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIK 196 (410)
T ss_pred ceEEEEeecCccHHHHHH
Confidence 579999999999999985
No 323
>KOG0098|consensus
Probab=96.34 E-value=0.0064 Score=45.31 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN 87 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
|+.+.+..+-.+.|.=+|+|-|.+...+ ..+.++++ +++. .+.-++++-||+||.... - --.+.-+.|.+.
T Consensus 66 e~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D-~rq~~~~NmvImLiGNKsDL~~rR--~-Vs~EEGeaFA~e- 140 (216)
T KOG0098|consen 66 ESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLED-ARQHSNENMVIMLIGNKSDLEARR--E-VSKEEGEAFARE- 140 (216)
T ss_pred HHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHH-HHHhcCCCcEEEEEcchhhhhccc--c-ccHHHHHHHHHH-
Confidence 6677777778889999999999865432 22333333 3322 356788888999997651 0 001223444333
Q ss_pred ccCCCCceeEEeecCC
Q psy8220 88 SIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~ 103 (161)
.+.+....||+++
T Consensus 141 ---hgLifmETSakt~ 153 (216)
T KOG0098|consen 141 ---HGLIFMETSAKTA 153 (216)
T ss_pred ---cCceeehhhhhhh
Confidence 3666678899998
No 324
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.25 E-value=0.0025 Score=52.42 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=17.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+++|||+|-+++||||||+
T Consensus 35 ~l~IaV~G~sGsGKSSfIN 53 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFIN 53 (376)
T ss_dssp -EEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4899999999999999995
No 325
>KOG0087|consensus
Probab=96.25 E-value=0.011 Score=44.66 Aligned_cols=86 Identities=10% Similarity=-0.129 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh
Q psy8220 11 GVVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN 87 (161)
Q Consensus 11 ~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
.|.++.+.......|--.|+|-|.+...+-+. +.++..|+.+ .+.++++|-||+||.... ...- +.. ..+
T Consensus 73 QERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr--aV~t-e~~----k~~ 145 (222)
T KOG0087|consen 73 QERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR--AVPT-EDG----KAF 145 (222)
T ss_pred hhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc--ccch-hhh----HhH
Confidence 35555554444567778999999976543221 3344445543 478899999999996520 0000 111 112
Q ss_pred ccCCCCceeEEeecCC
Q psy8220 88 SIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~ 103 (161)
.+..+...+..||+..
T Consensus 146 Ae~~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 146 AEKEGLFFLETSALDA 161 (222)
T ss_pred HHhcCceEEEeccccc
Confidence 2224566788999987
No 326
>KOG0083|consensus
Probab=96.25 E-value=0.0069 Score=42.87 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
|..+.+...-..+||.+|++-|..+.-+-. ...+...+.+- ....+.++-||+|+.++. -..- +.-+...+
T Consensus 58 erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er--~v~~-ddg~kla~--- 131 (192)
T KOG0083|consen 58 ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER--AVKR-DDGEKLAE--- 131 (192)
T ss_pred HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh--cccc-chHHHHHH---
Confidence 455555556678999999999987653321 22333333221 246788999999997641 0000 11122112
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
..+.|....||+++ .+++.-.-.|.+-+
T Consensus 132 -~y~ipfmetsaktg-----------------~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 132 -AYGIPFMETSAKTG-----------------FNVDLAFLAIAEEL 159 (192)
T ss_pred -HHCCCceecccccc-----------------ccHhHHHHHHHHHH
Confidence 24688999999999 77776555555444
No 327
>KOG0071|consensus
Probab=96.21 E-value=0.018 Score=41.12 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPST 69 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~ 69 (161)
..++.+|+.-.....-+|||+|+.+... +...++-..+.+. ...++++..||.|+...
T Consensus 72 d~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A 133 (180)
T KOG0071|consen 72 DKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA 133 (180)
T ss_pred hhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc
Confidence 3477888888889999999999865421 1223444444331 35788888999999754
No 328
>PLN00023 GTP-binding protein; Provisional
Probab=96.19 E-value=0.0063 Score=49.23 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--------------CCCcEEEEeecCCCCCc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--------------PGKKLVIVINKAGKPST 69 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--------------~~k~~ilVlNK~Dl~~~ 69 (161)
+.++.++...+..+|.+|+|.|.++..+-.. ..+.+.+... .+.|+++|.||+||.++
T Consensus 94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 3455666667899999999999987532211 1233333321 13689999999999654
No 329
>KOG0088|consensus
Probab=96.16 E-value=0.0083 Score=43.68 Aligned_cols=88 Identities=18% Similarity=0.009 Sum_probs=52.2
Q ss_pred hhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEe
Q psy8220 23 EAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFS 99 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS 99 (161)
..+|-+|+|.|.++..+-+. ..+...++.. ....+++|-||+||-++ +....++ -..|.+ ..+.-.+..|
T Consensus 84 RgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee--R~Vt~qe----Ae~YAe-svGA~y~eTS 156 (218)
T KOG0088|consen 84 RGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE--RQVTRQE----AEAYAE-SVGALYMETS 156 (218)
T ss_pred eCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh--hhhhHHH----HHHHHH-hhchhheecc
Confidence 46888999999876532111 2233333331 24678999999999654 1111111 111211 1244467788
Q ss_pred ecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 100 SRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
|+.. .|+.+|.+.|-+.+
T Consensus 157 Ak~N-----------------~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 157 AKDN-----------------VGISELFESLTAKM 174 (218)
T ss_pred cccc-----------------cCHHHHHHHHHHHH
Confidence 8887 99999999886554
No 330
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.14 E-value=0.035 Score=45.91 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=29.7
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
.+.|-.++++-|.++++..-.+=...... .+-|+|+|++|+|+.+.
T Consensus 225 qk~dYglLvVaAddG~~~~tkEHLgi~~a-~~lPviVvvTK~D~~~d 270 (527)
T COG5258 225 QKVDYGLLVVAADDGVTKMTKEHLGIALA-MELPVIVVVTKIDMVPD 270 (527)
T ss_pred cccceEEEEEEccCCcchhhhHhhhhhhh-hcCCEEEEEEecccCcH
Confidence 45667777777766655333221222222 47999999999999986
No 331
>KOG0395|consensus
Probab=96.04 E-value=0.032 Score=41.86 Aligned_cols=92 Identities=13% Similarity=0.014 Sum_probs=55.0
Q ss_pred HHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 20 SVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
..+..+|..++|.+.++..+-.+ ..+.+.+... ...|+++|.||+|+.... .... +.-.. +......+.
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R--~V~~-eeg~~----la~~~~~~f 142 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER--QVSE-EEGKA----LARSWGCAF 142 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc--ccCH-HHHHH----HHHhcCCcE
Confidence 35778899999999877643211 2233333211 246999999999997631 1111 11111 111135667
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+..||+.. .+++++...|.....
T Consensus 143 ~E~Sak~~-----------------~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 143 IETSAKLN-----------------YNVDEVFYELVREIR 165 (196)
T ss_pred EEeeccCC-----------------cCHHHHHHHHHHHHH
Confidence 88999887 778887777765443
No 332
>PRK05439 pantothenate kinase; Provisional
Probab=96.03 E-value=0.0055 Score=49.25 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 122 GAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 122 g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+...+...+..+++......+.-|||-|.|++|||||+.
T Consensus 66 ~~~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~ 104 (311)
T PRK05439 66 ANQRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTAR 104 (311)
T ss_pred hhHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHH
Confidence 344555566666654444567899999999999999863
No 333
>COG2262 HflX GTPases [General function prediction only]
Probab=95.95 E-value=0.0062 Score=50.26 Aligned_cols=19 Identities=26% Similarity=0.022 Sum_probs=16.8
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
--.|++|||+|.|||||.+
T Consensus 192 ~p~vaLvGYTNAGKSTL~N 210 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFN 210 (411)
T ss_pred CCeEEEEeeccccHHHHHH
Confidence 3689999999999999864
No 334
>KOG0394|consensus
Probab=95.81 E-value=0.12 Score=38.55 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=55.8
Q ss_pred HHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC-----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 20 SVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT-----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.-...||.+++|-|...+-+- .+..=.+++... ..-|+|++-||+|+...+.+.... .....|-.. ...
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~-~~Aq~WC~s---~gn 152 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSE-KKAQTWCKS---KGN 152 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeH-HHHHHHHHh---cCC
Confidence 345689999999998766432 222222333321 245899999999986532122221 122344433 246
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+|.+..||+.. .++++..+.+...
T Consensus 153 ipyfEtSAK~~-----------------~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 153 IPYFETSAKEA-----------------TNVDEAFEEIARR 176 (210)
T ss_pred ceeEEeccccc-----------------ccHHHHHHHHHHH
Confidence 78899999988 6777666665443
No 335
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=95.78 E-value=0.003 Score=55.40 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=17.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
.++|++||.|||||||+++
T Consensus 118 slrIvLVGKTGVGKSSLIN 136 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATIN 136 (763)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4799999999999999985
No 336
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.75 E-value=0.058 Score=50.56 Aligned_cols=141 Identities=12% Similarity=0.159 Sum_probs=73.6
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC--CCCCcEEEEeecCCCCCcccccccH------------HHHH
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSM------------AQIF 80 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~------------~~~~ 80 (161)
++ .++|+++-+.|.|+-..-..+..+ .++.+.+.- ..+..++-|+-++|-..-..+.+.+ .+.+
T Consensus 58 ~l-~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~ 136 (1153)
T PLN03210 58 EL-KQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEK 136 (1153)
T ss_pred HH-HHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHH
Confidence 44 688899999888886544434333 234443321 1356788889998832111111111 1345
Q ss_pred HHHhhhhccCCCCceeEEeecCCCCcchh----hh--------hhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEE
Q psy8220 81 QTWIPYNSIQSIYSSPRFSSRSQKDAQTE----RD--------LKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVV 148 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~i~iSa~~~~~~~~~----~~--------~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vv 148 (161)
..|...+.+..... -+........... +. ........-.|++.-++.+...+.... ...-.|+|+
T Consensus 137 ~~w~~al~~~~~~~--g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~ 213 (1153)
T PLN03210 137 IQWKQALTDVANIL--GYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIW 213 (1153)
T ss_pred HHHHHHHHHHhCcC--ceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc-CceEEEEEE
Confidence 67777665211111 1111111111111 11 011112344677777777776654321 234579999
Q ss_pred eecCCCcccccC
Q psy8220 149 GECNIAGSIRDL 160 (161)
Q Consensus 149 G~pNVGKSsl~~ 160 (161)
|++++|||||+.
T Consensus 214 G~gGiGKTTLA~ 225 (1153)
T PLN03210 214 GSSGIGKTTIAR 225 (1153)
T ss_pred cCCCCchHHHHH
Confidence 999999999974
No 337
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.065 Score=44.97 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
.+.+-.+|..+.|+|+-.++..+...+.+..+- .+.|++-.+||.|-...
T Consensus 99 YRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl-R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 99 YRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL-RDIPIFTFINKLDREGR 148 (528)
T ss_pred HHHHHhhheeeEEEecccCccHHHHHHHHHHhh-cCCceEEEeeccccccC
Confidence 566678999999999999988777777776654 68999999999997543
No 338
>KOG1486|consensus
Probab=95.73 E-value=0.004 Score=48.68 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCccccc
Q psy8220 143 ITVGVVGECNIAGSIRD 159 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~ 159 (161)
-||++||+|.||||||.
T Consensus 63 aRValIGfPSVGKStlL 79 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLL 79 (364)
T ss_pred eEEEEecCCCccHHHHH
Confidence 69999999999999985
No 339
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=95.72 E-value=0.011 Score=44.01 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=28.5
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhC-------C-CCCcEEEEeecCCCCCc
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVG-------T-PGKKLVIVINKAGKPST 69 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~-------~-~~k~~ilVlNK~Dl~~~ 69 (161)
.+..+-.|+||+|+.... ..-.+.+++|.. . ...|++++.||.|+...
T Consensus 72 ~~~~~k~IIfvvDSs~~~-~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQ-KELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred chhhCCEEEEEEeCccch-hhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 577899999999987421 111223333211 1 36799999999998753
No 340
>KOG0458|consensus
Probab=95.60 E-value=0.048 Score=46.99 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCC-------CCcHHHHHHHhCCCCCcEEEEeecCCCCCc-ccccccHHHHHHHHh
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMG-------TRCKVAEDLVVGTPGKKLVIVINKAGKPST-KIQSGSMAQIFQTWI 84 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~-------~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~-~~~~~~~~~~~~~~~ 84 (161)
|...+ ..-+.+||+.++|+|++.+.. .+-.+....++...-..+|+++||.|+++= +.+-..+...+..++
T Consensus 268 Fi~nm-i~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL 346 (603)
T KOG0458|consen 268 FIPNM-ISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFL 346 (603)
T ss_pred cchhh-hccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHH
Confidence 45555 456779999999999975432 222344444443123578999999999863 111111111122222
Q ss_pred -hhhcc-CCCCceeEEeecCCCCcchhh-hhhhhccccccCHHHHHHHHHhHh
Q psy8220 85 -PYNSI-QSIYSSPRFSSRSQKDAQTER-DLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 85 -~~~~~-~~~~~~i~iSa~~~~~~~~~~-~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+...- ......+|+|+.+|.+-.+.- ...+.++. .| ..|+..|..+-
T Consensus 347 ~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY--~G-p~LL~~id~~~ 396 (603)
T KOG0458|consen 347 KESCGFKESSVKFIPISGLSGENLIKIEQENELSQWY--KG-PTLLSQIDSFK 396 (603)
T ss_pred HHhcCcccCCcceEecccccCCcccccccchhhhhhh--cC-ChHHHHHhhcc
Confidence 11110 012357999999985443321 11222332 22 46777777643
No 341
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.60 E-value=0.01 Score=47.21 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 130 LGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 130 l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+++.....+.+.-|||.|.+++|||||+.
T Consensus 50 ~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar 80 (290)
T TIGR00554 50 LEQFLGTNGAKIPYIISIAGSVAVGKSTTAR 80 (290)
T ss_pred HHHHHhcccCCCCEEEEEECCCCCCHHHHHH
Confidence 3334433323456899999999999999873
No 342
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.42 E-value=0.017 Score=46.95 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.8
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..|+|.|.|++|||||+.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~ 74 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIE 74 (332)
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 45899999999999999874
No 343
>KOG0079|consensus
Probab=95.40 E-value=0.088 Score=38.03 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
|..+++.....+..+.++.|-|.+.+.+-. ...+++.++.. ...|-++|-||.|+.+.. .-..+....|...
T Consensus 68 ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rr---vV~t~dAr~~A~~--- 141 (198)
T KOG0079|consen 68 ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERR---VVDTEDARAFALQ--- 141 (198)
T ss_pred HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccce---eeehHHHHHHHHh---
Confidence 556677555557888999999998765422 23344445442 357889999999987641 1111222333332
Q ss_pred CCCCceeEEeecCC
Q psy8220 90 QSIYSSPRFSSRSQ 103 (161)
Q Consensus 90 ~~~~~~i~iSa~~~ 103 (161)
.+...+..||+..
T Consensus 142 -mgie~FETSaKe~ 154 (198)
T KOG0079|consen 142 -MGIELFETSAKEN 154 (198)
T ss_pred -cCchheehhhhhc
Confidence 3566778898887
No 344
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.37 E-value=0.015 Score=41.98 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=35.0
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCCCCCcEEEEeecCCC
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGTPGKKLVIVINKAGK 66 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~~~k~~ilVlNK~Dl 66 (161)
+|.+.+..++.+.+....-+.|.++.|+|+....... ...+.+.+.. . =++|+||+|+
T Consensus 99 ~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---a-d~ivlnk~dl 158 (158)
T cd03112 99 DPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---A-DRILLNKTDL 158 (158)
T ss_pred CHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---C-CEEEEecccC
Confidence 3444554444443456777899999999986543211 1233444432 2 2669999996
No 345
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=95.37 E-value=0.017 Score=47.08 Aligned_cols=56 Identities=7% Similarity=0.004 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--------C-Cc--HHHHHHHhCC---CCCcEEEEeecCCCCCc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--------T-RC--KVAEDLVVGT---PGKKLVIVINKAGKPST 69 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--------~-~~--~~i~~~l~~~---~~k~~ilVlNK~Dl~~~ 69 (161)
.+..|....+.++.|+||+|.++... . .. ..+.+.+... .+.|+++++||.|+..+
T Consensus 197 ~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~ 266 (342)
T smart00275 197 ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEE 266 (342)
T ss_pred hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHH
Confidence 56777888899999999999986421 0 00 1111222221 46899999999998653
No 346
>KOG0081|consensus
Probab=95.31 E-value=0.15 Score=37.23 Aligned_cols=85 Identities=9% Similarity=-0.056 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN 87 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
|..+.+.-.-..+|=-.|++.|.+...+-.+ ..+...++.+ .+..+++.-||+||.... ...+.....+
T Consensus 78 ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R-------~Vs~~qa~~L 150 (219)
T KOG0081|consen 78 ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR-------VVSEDQAAAL 150 (219)
T ss_pred HHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh-------hhhHHHHHHH
Confidence 4445554334455666788999875432111 2233333322 245688889999997641 1111112223
Q ss_pred ccCCCCceeEEeecCC
Q psy8220 88 SIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~ 103 (161)
..+.+.|.+..||.++
T Consensus 151 a~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 151 ADKYGLPYFETSACTG 166 (219)
T ss_pred HHHhCCCeeeeccccC
Confidence 3335789999999998
No 347
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.26 E-value=0.015 Score=46.22 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
...-+.++|.||+|||||+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~ 122 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLT 122 (290)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35789999999999999974
No 348
>COG3596 Predicted GTPase [General function prediction only]
Probab=95.20 E-value=0.0059 Score=48.13 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=18.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+++|.++|.+++||||||+
T Consensus 38 ~pvnvLi~G~TG~GKSSliN 57 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLIN 57 (296)
T ss_pred CceeEEEecCCCCcHHHHHH
Confidence 56999999999999999986
No 349
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.19 E-value=0.5 Score=35.11 Aligned_cols=58 Identities=14% Similarity=0.002 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCCC--CCcEEEEeecCCCCCc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGTP--GKKLVIVINKAGKPST 69 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~~--~k~~ilVlNK~Dl~~~ 69 (161)
+.++.++......++.++++.|........+ +.+...+.... ..|+++|.||+|+...
T Consensus 65 ~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 65 EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 4456676677789999999999876433221 23333333322 5899999999999765
No 350
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.019 Score=50.58 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=30.3
Q ss_pred cCHHHHHHHHHhHhhcC---CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK---DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~---~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+|+++..+.|.+|+.-. ....+--+++||.|+|||+||..
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgk 368 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGK 368 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHH
Confidence 89999999999987421 12233457788999999999853
No 351
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=95.16 E-value=0.018 Score=46.37 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC---------Cc--HH-HHHHHhCC--CCCcEEEEeecCCCCCc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT---------RC--KV-AEDLVVGT--PGKKLVIVINKAGKPST 69 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~---------~~--~~-i~~~l~~~--~~k~~ilVlNK~Dl~~~ 69 (161)
.+..|....+.++.|++|+|.++.... .. .. +...+... .++|+++++||.|+..+
T Consensus 174 ~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ 243 (317)
T cd00066 174 ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEE 243 (317)
T ss_pred cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHH
Confidence 466677788899999999999864210 00 11 12222221 47899999999997654
No 352
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.03 E-value=0.022 Score=46.63 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHhHhhcC--C-CCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK--D-IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~--~-~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+|.++-++.|.+++... + .....-++++|.|++|||||+.
T Consensus 54 ~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~ 96 (361)
T smart00763 54 FGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVE 96 (361)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHH
Confidence 56555555555544321 1 1122347889999999999974
No 353
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.80 E-value=0.022 Score=43.98 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=32.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCC-CcEEEEeecCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKP 67 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~ 67 (161)
+..++.+|++|.|+|++..--...+.+.++..+ .+ +++.+|+||+|-.
T Consensus 150 Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~e-lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEE-LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHH-hCCceEEEEEeeccch
Confidence 556789999999999764321222334443333 46 9999999999954
No 354
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.75 E-value=0.012 Score=44.98 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=17.6
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..|+++|.||+|||||+.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~ 57 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIK 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45789999999999999973
No 355
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.58 E-value=0.23 Score=39.77 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=22.0
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.|++-.||.++ .|+++|.+.|.++..
T Consensus 229 ppv~~t~A~~g-----------------~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 229 PPVVTTSALEG-----------------EGIDELWDAIEDHRK 254 (323)
T ss_pred CceeEeeeccC-----------------CCHHHHHHHHHHHHH
Confidence 35888999998 899999999987754
No 356
>PRK09866 hypothetical protein; Provisional
Probab=94.51 E-value=0.025 Score=49.70 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=16.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..++++|.+|+|||||++
T Consensus 70 ~~valvG~sgaGKSTLiN 87 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTIN 87 (741)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 789999999999999985
No 357
>KOG1547|consensus
Probab=94.50 E-value=0.047 Score=42.55 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=30.7
Q ss_pred ccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 120 CVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 120 ~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..|++.+.+.++..+-+.+. ..+|||||.++-||||||.
T Consensus 26 yvGidtI~~Qm~~k~mk~GF--~FNIMVVgqSglgkstlin 64 (336)
T KOG1547|consen 26 YVGIDTIIEQMRKKTMKTGF--DFNIMVVGQSGLGKSTLIN 64 (336)
T ss_pred cccHHHHHHHHHHHHHhccC--ceEEEEEecCCCCchhhHH
Confidence 38999999998765543321 2789999999999999985
No 358
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.38 E-value=0.13 Score=41.67 Aligned_cols=42 Identities=31% Similarity=0.276 Sum_probs=27.9
Q ss_pred hccEEEEEEeCCCCCCCCc---HHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 24 AADVILEVVDARDPMGTRC---KVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 24 ~aDviL~VvD~~~~~~~~~---~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
.-|-++-|+|+.......+ ....+++. --=++|+||+|+++.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia----~AD~ivlNK~Dlv~~ 160 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLA----FADVIVLNKTDLVDA 160 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHH----hCcEEEEecccCCCH
Confidence 4566999999987654333 22233332 233789999999987
No 359
>KOG2486|consensus
Probab=94.36 E-value=0.015 Score=45.98 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=17.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
..+++++|.+|||||||+.
T Consensus 136 ~pe~~~~g~SNVGKSSLln 154 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLN 154 (320)
T ss_pred CceeeeecCCcccHHHHHh
Confidence 4799999999999999985
No 360
>KOG0467|consensus
Probab=94.30 E-value=0.068 Score=47.52 Aligned_cols=56 Identities=23% Similarity=0.228 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCC
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAG 65 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~D 65 (161)
|.|.- |--++ ..+..-+|..+.++|+-++..++...+.+.... .+...++|+||+|
T Consensus 80 pghvd--f~sev-ssas~l~d~alvlvdvvegv~~qt~~vlrq~~~-~~~~~~lvinkid 135 (887)
T KOG0467|consen 80 PGHVD--FSSEV-SSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI-EGLKPILVINKID 135 (887)
T ss_pred CCccc--hhhhh-hhhhhhcCCcEEEEeeccccchhHHHHHHHHHH-ccCceEEEEehhh
Confidence 55553 55666 677888999999999999999888887775443 4678899999999
No 361
>PLN02200 adenylate kinase family protein
Probab=94.11 E-value=0.022 Score=43.86 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=17.1
Q ss_pred CCceEEEEEeecCCCccccc
Q psy8220 140 KTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~ 159 (161)
+.+..++|+|.|++||||+.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a 60 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQC 60 (234)
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 34578999999999999985
No 362
>KOG1487|consensus
Probab=94.10 E-value=0.025 Score=44.51 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-+|+++|+|-||||||..
T Consensus 60 a~vg~vgFPSvGksTl~~ 77 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLS 77 (358)
T ss_pred eeeeEEecCccchhhhhh
Confidence 489999999999999863
No 363
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.09 E-value=0.052 Score=42.83 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=18.2
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+.-||+-|.|+|||||++.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar 100 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTAR 100 (283)
T ss_pred CCCEEEEeccCccccHHHHHH
Confidence 456899999999999999863
No 364
>KOG0054|consensus
Probab=94.00 E-value=0.017 Score=54.57 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=17.0
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
.=||||||+++.|||||++
T Consensus 1166 ~eKVGIVGRTGaGKSSL~~ 1184 (1381)
T KOG0054|consen 1166 GEKVGIVGRTGAGKSSLIL 1184 (1381)
T ss_pred CceEEEeCCCCCCHHHHHH
Confidence 3599999999999999985
No 365
>PRK14974 cell division protein FtsY; Provisional
Probab=93.99 E-value=0.056 Score=43.96 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=16.5
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++..++++|.|+|||||++
T Consensus 139 ~~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3578999999999999965
No 366
>KOG0077|consensus
Probab=93.81 E-value=0.11 Score=38.21 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC--CCCcEEEEeecCCCCCc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT--PGKKLVIVINKAGKPST 69 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~--~~k~~ilVlNK~Dl~~~ 69 (161)
--++.|+.-+-.+|.+++++|+-+...-.+ .++...+... ...|+++..||+|....
T Consensus 76 qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 76 QARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 357788899999999999999977643221 2233222221 46899999999998654
No 367
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=93.78 E-value=0.22 Score=39.99 Aligned_cols=40 Identities=33% Similarity=0.291 Sum_probs=26.1
Q ss_pred CHHHHHHHHHhHhhcCCC-----------CCceEEEEEeecCCCcccccCC
Q psy8220 122 GAELLMLLLGNYTRNKDI-----------KTSITVGVVGECNIAGSIRDLE 161 (161)
Q Consensus 122 g~~~L~~~l~~~~~~~~~-----------~~~~~v~vvG~pNVGKSsl~~~ 161 (161)
.+.+++..|..|+...-. -.+.=|.+.|.+++|||+++++
T Consensus 115 ~t~~~i~~l~~~L~~~la~~~~iHg~~v~V~G~GvLi~G~SG~GKSelALe 165 (308)
T PRK05428 115 STTRLISKLTNYLDRKLAPRTSVHGVLVDIYGIGVLITGESGIGKSETALE 165 (308)
T ss_pred cHHHHHHHHHHHHHHHhhhcceeeeEEEEECCEEEEEEcCCCCCHHHHHHH
Confidence 456666666655543210 1235688899999999999864
No 368
>KOG2486|consensus
Probab=93.77 E-value=0.064 Score=42.53 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=55.1
Q ss_pred EEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccc-cHHHHHHHHhhhh-cc--CCCCceeEEeecCC
Q psy8220 28 ILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSG-SMAQIFQTWIPYN-SI--QSIYSSPRFSSRSQ 103 (161)
Q Consensus 28 iL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~i~iSa~~~ 103 (161)
+++++|++.|+..-|...++++-+ .+.|..+|+||||-.....+.. +....+......+ +. ....|-+..|+.+.
T Consensus 223 ~FLLvd~sv~i~~~D~~~i~~~ge-~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~ 301 (320)
T KOG2486|consen 223 VFLLVDASVPIQPTDNPEIAWLGE-NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTS 301 (320)
T ss_pred eeeeeeccCCCCCCChHHHHHHhh-cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccc
Confidence 678889999988878777888876 6899999999999654311000 0001111101111 10 01234567888887
Q ss_pred CCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 104 KDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.|.++|+-.+.+..
T Consensus 302 -----------------~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 302 -----------------LGRDLLLLHIAQLR 315 (320)
T ss_pred -----------------cCceeeeeehhhhh
Confidence 89999887766543
No 369
>KOG1143|consensus
Probab=93.66 E-value=0.49 Score=39.31 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=30.1
Q ss_pred ccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 25 ADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 25 aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
-|..++|+.|..+...-.++-..++.. .+.|++++++|+|+..+
T Consensus 275 Ph~A~LvVsA~~Gi~~tTrEHLgl~~A-L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 275 PHFACLVVSADRGITWTTREHLGLIAA-LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred CceEEEEEEcCCCCccccHHHHHHHHH-hCCCeEEEEEeeccccc
Confidence 356777887776655433333333433 47999999999999876
No 370
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.44 E-value=0.028 Score=45.46 Aligned_cols=18 Identities=22% Similarity=0.098 Sum_probs=16.2
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-+|+++|.|++|||||+.
T Consensus 163 ~~~~~~G~~~~gkstl~~ 180 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVN 180 (325)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 479999999999999974
No 371
>PLN03126 Elongation factor Tu; Provisional
Probab=93.41 E-value=0.033 Score=47.40 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.4
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..++++++|.+|+|||||+.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~ 99 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTA 99 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHH
Confidence 456899999999999999974
No 372
>PLN03127 Elongation factor Tu; Provisional
Probab=93.29 E-value=0.036 Score=46.79 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.4
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..++|+++|.+|+|||||+.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~ 79 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTA 79 (447)
T ss_pred CceEEEEEECcCCCCHHHHHH
Confidence 456999999999999999973
No 373
>KOG2004|consensus
Probab=93.29 E-value=0.1 Score=46.31 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=30.7
Q ss_pred cCHHHHHHHHHhHhhc---CCCCCceEEEEEeecCCCccccc
Q psy8220 121 VGAELLMLLLGNYTRN---KDIKTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~---~~~~~~~~v~vvG~pNVGKSsl~ 159 (161)
+|++.+.+.|.+++.- ++...+--++++|.|+|||+|+.
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~ 455 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA 455 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH
Confidence 8999999999988642 23334456888999999999985
No 374
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.28 E-value=0.049 Score=47.41 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHhHhhcC---CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK---DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~---~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+|+++-++.|.+++... ...+..-++++|.|+||||||+.
T Consensus 79 yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~ 121 (644)
T PRK15455 79 YGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAE 121 (644)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHH
Confidence 78888888877766321 11233567889999999999963
No 375
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.13 E-value=0.038 Score=47.88 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+.+.-|+|||.|++||||||.
T Consensus 67 PPPfIvavvGPpGtGKsTLir 87 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIR 87 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHH
No 376
>KOG1954|consensus
Probab=93.01 E-value=0.17 Score=41.80 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=34.5
Q ss_pred HhhhccEEEEEEeCCCCC-CCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 21 VVEAADVILEVVDARDPM-GTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~-~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
-++++|.|+++.|+-.-. +..-..++..++. ..-.+-+|+||+|.++.
T Consensus 178 FaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 178 FAERVDRIILLFDAHKLDISDEFKRVIDALKG-HEDKIRVVLNKADQVDT 226 (532)
T ss_pred HHHhccEEEEEechhhccccHHHHHHHHHhhC-CcceeEEEeccccccCH
Confidence 467999999999985432 2222455666665 45667789999999987
No 377
>KOG1707|consensus
Probab=92.92 E-value=0.19 Score=43.52 Aligned_cols=85 Identities=16% Similarity=0.036 Sum_probs=50.0
Q ss_pred HHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.+.+++||+|..|-...++.+- -...++-++++. .+.|+|+|-||+|+.....++ ........+..+.+ -
T Consensus 74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s--~e~~~~pim~~f~E--i 149 (625)
T KOG1707|consen 74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNS--DEVNTLPIMIAFAE--I 149 (625)
T ss_pred HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccc--hhHHHHHHHHHhHH--H
Confidence 5788999999999987765431 113344445442 258999999999997653211 11112233333331 1
Q ss_pred CceeEEeecCCCCcc
Q psy8220 93 YSSPRFSSRSQKDAQ 107 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~ 107 (161)
...+..||++..+.+
T Consensus 150 EtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 150 ETCIECSALTLANVS 164 (625)
T ss_pred HHHHhhhhhhhhhhH
Confidence 235778888774444
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.91 E-value=0.11 Score=41.05 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=16.1
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+-.++++|.|+|||||++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTI 89 (272)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3467889999999999975
No 379
>KOG0460|consensus
Probab=92.89 E-value=1.1 Score=36.75 Aligned_cols=49 Identities=24% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCC-CcEEEEeecCCCCCc
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPST 69 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~ 69 (161)
--..+-|-.|+|+-|+++.-.+..+=.-+.++ -+ ..+++.+||.|++++
T Consensus 136 tGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 136 TGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGVKHIVVFINKVDLVDD 185 (449)
T ss_pred cCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCCceEEEEEecccccCC
Confidence 34457788999999988765544331111222 24 445666899999965
No 380
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.85 E-value=0.089 Score=43.94 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=16.2
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+..+++||.++|||||++
T Consensus 241 ~~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTL 258 (436)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 468999999999999986
No 381
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.84 E-value=0.1 Score=41.28 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=16.4
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+-.++++|.++|||||++
T Consensus 193 ~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3458999999999999986
No 382
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.82 E-value=0.096 Score=41.97 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=16.6
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
..-.|+++|+|++||||+.
T Consensus 132 ~~~~I~l~G~~GsGKStvg 150 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLG 150 (309)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4568999999999999985
No 383
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.04 Score=47.18 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+=+|+|+|.+++|||||+
T Consensus 364 GEkvAIlG~SGsGKSTll 381 (573)
T COG4987 364 GEKVAILGRSGSGKSTLL 381 (573)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 458999999999999986
No 384
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.72 E-value=0.046 Score=42.40 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+=++|+||.++.|||||..
T Consensus 53 Ge~vGiiG~NGaGKSTLlk 71 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLK 71 (249)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4589999999999999853
No 385
>KOG0074|consensus
Probab=92.72 E-value=0.057 Score=38.69 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC--CCCcEEEEeecCCCCCc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT--PGKKLVIVINKAGKPST 69 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~ 69 (161)
.+-.|....++.|.+|||+|+.+.-. +..+++.+++.+. ...|+++-.||.|++..
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 56678888899999999999765422 1223444444332 46799999999998654
No 386
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=92.60 E-value=0.047 Score=47.61 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=17.7
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
++.+|+++|.+|+|||||+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~ 105 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLD 105 (587)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 55789999999999999974
No 387
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=92.55 E-value=0.2 Score=38.65 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=30.5
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHH---HH---HhC-CCCCcEEEEeecCCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAE---DL---VVG-TPGKKLVIVINKAGKPST 69 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~---~~---l~~-~~~k~~ilVlNK~Dl~~~ 69 (161)
....+.++++|||+|+.... .++.+. +. +.+ .++..+.+.+.|+|+.++
T Consensus 71 ~~if~~v~~LIyV~D~qs~~--~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 71 EEIFSNVGVLIYVFDAQSDD--YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HHHHCTESEEEEEEETT-ST--CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HHHHhccCEEEEEEEccccc--HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 45678999999999998332 222222 21 211 157889999999999876
No 388
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.45 E-value=0.052 Score=40.40 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCccccc
Q psy8220 143 ITVGVVGECNIAGSIRD 159 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~ 159 (161)
=.|+|||.++.|||||.
T Consensus 37 e~vaiVG~SGSGKSTLl 53 (228)
T COG4181 37 ETVAIVGPSGSGKSTLL 53 (228)
T ss_pred ceEEEEcCCCCcHHhHH
Confidence 47999999999999986
No 389
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.37 E-value=0.11 Score=39.00 Aligned_cols=35 Identities=17% Similarity=0.011 Sum_probs=23.8
Q ss_pred HHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
-....+.+++++... ..--+.+.|.|+||||+|+.
T Consensus 22 ~~~~~~~l~~~~~~~---~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 22 NAELLAALRQLAAGK---GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred cHHHHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHH
Confidence 345556666654322 23468899999999999863
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.30 E-value=0.14 Score=41.41 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=16.6
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+-.++++|.|++||||++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3568999999999999986
No 391
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=92.21 E-value=0.7 Score=37.11 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccCC
Q psy8220 142 SITVGVVGECNIAGSIRDLE 161 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~~ 161 (161)
+.=|.+.|.+++||||++++
T Consensus 146 g~gvli~G~sg~GKS~lal~ 165 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALE 165 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 35688899999999998763
No 392
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.08 E-value=0.053 Score=33.15 Aligned_cols=16 Identities=13% Similarity=-0.072 Sum_probs=14.3
Q ss_pred EEEEEeecCCCccccc
Q psy8220 144 TVGVVGECNIAGSIRD 159 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~ 159 (161)
...|.|..++|||||+
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999986
No 393
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.04 E-value=0.12 Score=43.38 Aligned_cols=19 Identities=5% Similarity=0.167 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+-.+++||.++|||||++
T Consensus 190 ~g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4568999999999999987
No 394
>KOG0057|consensus
Probab=91.97 E-value=0.057 Score=46.35 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=17.6
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-+|||||.++.||||+++
T Consensus 377 kGekVaIvG~nGsGKSTilr 396 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILR 396 (591)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45699999999999999874
No 395
>KOG0781|consensus
Probab=91.94 E-value=0.17 Score=43.04 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=16.6
Q ss_pred CCceEEEEEeecCCCccc
Q psy8220 140 KTSITVGVVGECNIAGSI 157 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSs 157 (161)
.+|..|.+||..+|||||
T Consensus 376 krPYVi~fvGVNGVGKST 393 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKST 393 (587)
T ss_pred CCCeEEEEEeecCccccc
Confidence 478999999999999998
No 396
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.70 E-value=0.14 Score=44.59 Aligned_cols=35 Identities=17% Similarity=0.026 Sum_probs=22.6
Q ss_pred HHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 125 LLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 125 ~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..+.|.++.+.+. +.+..|.++|+|++||||+..
T Consensus 376 eV~~iL~~~~~~r~-~~g~~Ivl~Gl~GSGKSTia~ 410 (568)
T PRK05537 376 EVVAELRRTYPPRH-KQGFTVFFTGLSGAGKSTIAK 410 (568)
T ss_pred HHHHHHHHHhcccc-CCCeEEEEECCCCChHHHHHH
Confidence 33333444443332 345688999999999999864
No 397
>CHL00189 infB translation initiation factor 2; Provisional
Probab=91.63 E-value=0.072 Score=47.66 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=17.6
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
++..|+|+|.+|+|||||+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld 262 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLD 262 (742)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45799999999999999973
No 398
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.48 E-value=0.07 Score=44.39 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=16.9
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
..+|+|+|.+++|||||+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~ 237 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVN 237 (399)
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3689999999999999974
No 399
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.46 E-value=0.19 Score=42.20 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=16.6
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++..|+++|.|||||||++
T Consensus 99 ~~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3578999999999999976
No 400
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=91.27 E-value=0.16 Score=41.75 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.-++|+|.||+||||||.
T Consensus 206 ~~~~~~g~~~~GKtt~~~ 223 (366)
T PRK14489 206 PLLGVVGYSGTGKTTLLE 223 (366)
T ss_pred cEEEEecCCCCCHHHHHH
Confidence 479999999999999974
No 401
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.20 E-value=0.075 Score=45.89 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=17.5
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-++|+||.++.|||||+.
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~ 373 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIK 373 (567)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44689999999999999974
No 402
>KOG0086|consensus
Probab=91.07 E-value=1.5 Score=31.96 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhC---C--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 11 GVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVG---T--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 11 ~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~---~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
.|..+.+.+.-...|.-.++|-|++...+ -..+-+++.+ . ++.-++++-||.||-+.. ...+.+ ..
T Consensus 68 QErFRSVtRsYYRGAAGAlLVYD~Tsrds--fnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R--~VtflE-----As 138 (214)
T KOG0086|consen 68 QERFRSVTRSYYRGAAGALLVYDITSRDS--FNALTNWLTDARTLASPNIVVILCGNKKDLDPER--EVTFLE-----AS 138 (214)
T ss_pred HHHHHHHHHHHhccccceEEEEeccchhh--HHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhh--hhhHHH-----HH
Confidence 35667776777788888999999875432 1233333322 1 456678888999997651 111111 11
Q ss_pred hhccCCCCceeEEeecCC
Q psy8220 86 YNSIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~ 103 (161)
.+...........||.+|
T Consensus 139 ~FaqEnel~flETSa~TG 156 (214)
T KOG0086|consen 139 RFAQENELMFLETSALTG 156 (214)
T ss_pred hhhcccceeeeeeccccc
Confidence 222112334567799998
No 403
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.04 E-value=0.075 Score=47.38 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+=+|+|||.+++|||||.+
T Consensus 499 Ge~vaIvG~SGsGKSTL~K 517 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLK 517 (709)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3589999999999999964
No 404
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.92 E-value=0.14 Score=41.41 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=23.2
Q ss_pred HHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+++|...|....... .+-.+.|.|.|++|||+++.
T Consensus 24 ~~~l~~~l~~~~~~~---~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 24 IEELAKALRPILRGS---RPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred HHHHHHHHHHHHcCC---CCCcEEEECCCCCCHHHHHH
Confidence 455555555544321 23468889999999999874
No 405
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.73 E-value=0.22 Score=41.79 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=15.2
Q ss_pred eEEEEEeecCCCccccc
Q psy8220 143 ITVGVVGECNIAGSIRD 159 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~ 159 (161)
-.++++|.++|||||++
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47899999999999975
No 406
>PLN02796 D-glycerate 3-kinase
Probab=90.68 E-value=0.11 Score=42.39 Aligned_cols=21 Identities=5% Similarity=0.115 Sum_probs=18.1
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..++-|||+|.+++|||||+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~ 118 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVF 118 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHH
Confidence 356889999999999999963
No 407
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=90.56 E-value=0.23 Score=39.85 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=17.6
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.++.|+|-|.|++||||++.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~ 110 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAF 110 (301)
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 56889999999999999864
No 408
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.48 E-value=0.22 Score=39.86 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=22.7
Q ss_pred HHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 125 LLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 125 ~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+.++.|.+.+..-...+.-.+++||-+|.|||+++.
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~ 79 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIE 79 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHH
Confidence 444445544432222233469999999999999873
No 409
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.43 E-value=0.2 Score=41.02 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..+.|.|.|++|||++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999999875
No 410
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=90.34 E-value=0.53 Score=34.13 Aligned_cols=49 Identities=24% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPS 68 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~ 68 (161)
..++..||.+++++.+...-...-..+.+.+.. .+.|..+|+||+|...
T Consensus 109 ~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~-~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 109 IASLTGADAALLVTEPTPSGLHDLERAVELVRH-FGIPVGVVINKYDLND 157 (179)
T ss_pred HHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH-cCCCEEEEEeCCCCCc
Confidence 456678888888887763311122334444544 4677888999988643
No 411
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.34 E-value=0.1 Score=44.68 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=17.5
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
++-++++||.++.|||||+.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999974
No 412
>KOG2749|consensus
Probab=90.33 E-value=0.26 Score=40.42 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCccccc
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~ 159 (161)
.++...++.++..+.+. ...+-+|++||-.+||||||.
T Consensus 83 lNlH~ale~~R~~~e~~-~~~GPrv~vVGp~d~GKsTl~ 120 (415)
T KOG2749|consen 83 LNLHAALEKRRMQAEEE-SSYGPRVMVVGPTDVGKSTLC 120 (415)
T ss_pred hhHHHHHHHHhhhhhhh-hccCCEEEEECCCccchHHHH
Confidence 45556666655544432 234569999999999999985
No 413
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=90.33 E-value=1.2 Score=36.76 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCC
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGK 66 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl 66 (161)
.|.....+++.++ .+.+.|++|.+.+.+ +...+-.+...+.. .++|+.+|.+|+|.
T Consensus 98 t~~f~~~~Yl~~~---~~~~yD~fiii~s~r--f~~ndv~La~~i~~-~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 98 TPNFPPEEYLKEV---KFYRYDFFIIISSER--FTENDVQLAKEIQR-MGKKFYFVRTKVDS 153 (376)
T ss_dssp GSS--HHHHHHHT---TGGG-SEEEEEESSS----HHHHHHHHHHHH-TT-EEEEEE--HHH
T ss_pred CCCCCHHHHHHHc---cccccCEEEEEeCCC--CchhhHHHHHHHHH-cCCcEEEEEecccc
Confidence 3444555666655 588999999888754 34556667777776 79999999999995
No 414
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=90.29 E-value=0.24 Score=38.85 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=17.1
Q ss_pred CCceEEEEEeecCCCcccccCC
Q psy8220 140 KTSITVGVVGECNIAGSIRDLE 161 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~~ 161 (161)
+.++-|.+=|.|+|||||++.|
T Consensus 87 ~~p~IILIGGasGVGkStIA~E 108 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGE 108 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHH
Confidence 3466677779999999998753
No 415
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.25 E-value=0.3 Score=41.21 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=16.7
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+..++++|.|+|||||++
T Consensus 94 ~p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4678999999999999976
No 416
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.18 E-value=0.24 Score=38.21 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=15.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.++|.|++|||||+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIR 61 (269)
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 358889999999999874
No 417
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.13 E-value=0.24 Score=38.52 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=21.8
Q ss_pred HHHHHHHHhHhhcCCCCCceEEEEEeecCCCccccc
Q psy8220 124 ELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 124 ~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~ 159 (161)
+++.+.|....+.. ..+.|.|-+|+||||+.
T Consensus 114 ~~~~~~l~~~v~~~-----~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 114 EEIAEFLRSAVRGR-----GNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHHHCHHTT-----EEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhccccc-----eEEEEECCCccccchHH
Confidence 44444554444333 58999999999999986
No 418
>KOG0090|consensus
Probab=89.83 E-value=1.5 Score=33.68 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=35.5
Q ss_pred CCcchHHHHHHHHHHHhh---hccEEEEEEeCCCCCCCCcHHHHHH----HhCC----CCCcEEEEeecCCCCCc
Q psy8220 6 PMEMRGVVVQEIERSVVE---AADVILEVVDARDPMGTRCKVAEDL----VVGT----PGKKLVIVINKAGKPST 69 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~---~aDviL~VvD~~~~~~~~~~~i~~~----l~~~----~~k~~ilVlNK~Dl~~~ 69 (161)
|.|.+- -.++ .+.++ .|-.|+||+|+..... .-....++ +... ...|++++.||.|+.-.
T Consensus 90 PGH~rl--R~kl-~e~~~~~~~akaiVFVVDSa~f~k-~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 90 PGHSRL--RRKL-LEYLKHNYSAKAIVFVVDSATFLK-NVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred CCcHHH--HHHH-HHHccccccceeEEEEEeccccch-hhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 555442 2233 34455 7899999999865432 12223333 2221 35789999999998643
No 419
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=89.75 E-value=0.56 Score=32.81 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccc
Q psy8220 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIR 158 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl 158 (161)
.+.+.++|..++......+++...+=|.|+||||-+
T Consensus 34 ~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 34 VEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFV 69 (127)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHH
Confidence 456777777777655455678899999999999854
No 420
>PRK06851 hypothetical protein; Provisional
Probab=89.70 E-value=0.16 Score=41.78 Aligned_cols=18 Identities=11% Similarity=-0.225 Sum_probs=15.3
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.+.+-|.|++|||||+.
T Consensus 215 ~~~~i~G~pG~GKstl~~ 232 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLK 232 (367)
T ss_pred eEEEEeCCCCCcHHHHHH
Confidence 358888999999999974
No 421
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=89.66 E-value=0.71 Score=36.49 Aligned_cols=47 Identities=30% Similarity=0.306 Sum_probs=34.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
..++..||.+|.|..++ |.+-.| ..+.+.+.. .+.|..+|+||.++.
T Consensus 180 i~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~-f~ip~~iViNr~~~g 227 (284)
T COG1149 180 IASLKGADLAILVTEPT-PFGLHDLKRALELVEH-FGIPTGIVINRYNLG 227 (284)
T ss_pred HHhhccCCEEEEEecCC-ccchhHHHHHHHHHHH-hCCceEEEEecCCCC
Confidence 46888999999999876 444444 345555544 689999999999654
No 422
>PLN02199 shikimate kinase
Probab=89.60 E-value=0.29 Score=39.24 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=15.3
Q ss_pred eEEEEEeecCCCccccc
Q psy8220 143 ITVGVVGECNIAGSIRD 159 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~ 159 (161)
-.|.+||++++||||+.
T Consensus 103 ~~I~LIG~~GSGKSTVg 119 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVG 119 (303)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47999999999999975
No 423
>KOG0097|consensus
Probab=89.53 E-value=1.6 Score=31.34 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhC---C--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVG---T--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~---~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
|..+.+.+.-...|.-.|+|-|.+..-+ ..++..++.+ . ++.-++++-||.||-... .... +. .+.
T Consensus 71 erfravtrsyyrgaagalmvyditrrst--ynhlsswl~dar~ltnpnt~i~lignkadle~qr--dv~y-ee----ak~ 141 (215)
T KOG0097|consen 71 ERFRAVTRSYYRGAAGALMVYDITRRST--YNHLSSWLTDARNLTNPNTVIFLIGNKADLESQR--DVTY-EE----AKE 141 (215)
T ss_pred HHHHHHHHHHhccccceeEEEEehhhhh--hhhHHHHHhhhhccCCCceEEEEecchhhhhhcc--cCcH-HH----HHH
Confidence 4555665666677888899999865422 2333333332 1 355678888999996541 1111 11 112
Q ss_pred hccCCCCceeEEeecCC
Q psy8220 87 NSIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~ 103 (161)
+.+..+.-.+..||+++
T Consensus 142 faeengl~fle~saktg 158 (215)
T KOG0097|consen 142 FAEENGLMFLEASAKTG 158 (215)
T ss_pred HHhhcCeEEEEeccccc
Confidence 22224556778899998
No 424
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=89.45 E-value=0.12 Score=40.09 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||..
T Consensus 39 Ge~~~i~G~nGsGKSTLl~ 57 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLR 57 (260)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999964
No 425
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.44 E-value=0.29 Score=42.34 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHhhcCC---CCCceEEEEEeecCCCccccc
Q psy8220 123 AELLMLLLGNYTRNKD---IKTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~---~~~~~~v~vvG~pNVGKSsl~ 159 (161)
...++..|.+.++-.. ...+-.++|+|.++|||||++
T Consensus 328 ~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 328 RGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred HHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHH
Confidence 3444455544443211 123468999999999999986
No 426
>PRK09183 transposase/IS protein; Provisional
Probab=89.40 E-value=0.26 Score=38.56 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|-|++|||+|+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred CeEEEEeCCCCCHHHHHH
Confidence 579999999999999864
No 427
>KOG3905|consensus
Probab=89.37 E-value=0.88 Score=37.18 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=43.2
Q ss_pred CCCcEEEEeecCCCCC-----cccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHH
Q psy8220 53 PGKKLVIVINKAGKPS-----TKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLM 127 (161)
Q Consensus 53 ~~k~~ilVlNK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~ 127 (161)
.+.|+++|++|+|.+. .+++.++++ .+..|++.|.-..+...++.|++.. .+++-|.
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfd-fiq~~lRkFCLr~GaaLiyTSvKE~-----------------KNidlly 282 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFD-FIQSHLRKFCLRYGAALIYTSVKET-----------------KNIDLLY 282 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHH-HHHHHHHHHHHHcCceeEEeecccc-----------------cchHHHH
Confidence 4789999999999842 124445553 3566666553224666788898887 6788887
Q ss_pred HHHHhHh
Q psy8220 128 LLLGNYT 134 (161)
Q Consensus 128 ~~l~~~~ 134 (161)
+.|....
T Consensus 283 KYivhr~ 289 (473)
T KOG3905|consen 283 KYIVHRS 289 (473)
T ss_pred HHHHHHh
Confidence 7776543
No 428
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=89.29 E-value=0.15 Score=45.99 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=18.2
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.++..|+|+|.+|+|||||+.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~ 308 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLD 308 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 356799999999999999973
No 429
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=89.13 E-value=0.15 Score=38.73 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||+.
T Consensus 48 Ge~~~i~G~nGsGKSTLl~ 66 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLR 66 (224)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999974
No 430
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.07 E-value=0.26 Score=44.73 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=25.6
Q ss_pred ccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 120 CVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 120 ~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
-.|.++-.+.+.+.+.... .-.+.++|.|+||||+++.
T Consensus 181 ~igr~~ei~~~~~~L~r~~---~~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 181 VIGREKEIERVIQILGRRT---KNNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCCcHHHHHHHHHHHcccc---cCCeEEECCCCCCHHHHHH
Confidence 3566666666666553321 2367899999999999863
No 431
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.96 E-value=0.34 Score=40.73 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=15.6
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+..++++|.++|||||++
T Consensus 223 ~~vi~lvGptGvGKTTta 240 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSI 240 (432)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356889999999999986
No 432
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=88.86 E-value=0.16 Score=38.66 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 36 e~~~l~G~nGsGKSTLl~ 53 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLH 53 (233)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 369999999999999974
No 433
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=88.85 E-value=0.22 Score=38.75 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=16.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+.+..++|.|||||+||..
T Consensus 137 ~lntLiigpP~~GKTTlLR 155 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLR 155 (308)
T ss_pred ceeeEEecCCCCChHHHHH
Confidence 4778999999999999853
No 434
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.83 E-value=0.41 Score=39.78 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=15.9
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+..+++||.++|||||.+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 568999999999999975
No 435
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.80 E-value=0.16 Score=39.31 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|.+++|||||+.
T Consensus 39 e~~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIK 56 (259)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999974
No 436
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.74 E-value=0.15 Score=38.40 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|.++.|||||..
T Consensus 38 e~~~i~G~nGsGKSTLl~ 55 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLR 55 (214)
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 479999999999999964
No 437
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.71 E-value=0.28 Score=39.42 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=25.1
Q ss_pred cCHHHHHHHHHhHhhcC--CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK--DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~--~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-++..+.+..++... .....-.+.+.|.|++|||||+.
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 45666666665544321 01122367889999999999874
No 438
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=88.70 E-value=0.15 Score=39.83 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||..
T Consensus 45 Ge~~~i~G~nGsGKSTLl~ 63 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLR 63 (267)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999964
No 439
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=88.69 E-value=0.36 Score=40.66 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=18.4
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+++-|||.|.++.|||||..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~ 230 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVF 230 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 367999999999999999963
No 440
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=88.64 E-value=0.2 Score=39.03 Aligned_cols=20 Identities=5% Similarity=-0.047 Sum_probs=17.1
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
....+.+.|.|++||||++.
T Consensus 41 ~~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred CcceEEEEcCCCCCHHHHHH
Confidence 34689999999999999874
No 441
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.64 E-value=0.17 Score=39.45 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||+.
T Consensus 47 Ge~~~i~G~nGsGKSTLl~ 65 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLR 65 (268)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999964
No 442
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=88.64 E-value=0.18 Score=43.70 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=17.5
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
++-+++|||.++.|||||+.
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~ 394 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLN 394 (588)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999974
No 443
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.55 E-value=0.19 Score=41.45 Aligned_cols=20 Identities=5% Similarity=0.131 Sum_probs=16.8
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.++++|.|+|||||++.
T Consensus 136 ~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34678899999999999863
No 444
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.52 E-value=0.34 Score=39.36 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..++|.|-+++|||||+.
T Consensus 161 ~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999999874
No 445
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=88.52 E-value=0.15 Score=39.84 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.++.|||||+.
T Consensus 50 Ge~~~I~G~nGsGKSTLl~ 68 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIK 68 (271)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4589999999999999974
No 446
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=88.50 E-value=0.17 Score=39.33 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||+.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~ 55 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLK 55 (265)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999964
No 447
>CHL00181 cbbX CbbX; Provisional
Probab=88.49 E-value=0.32 Score=38.66 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..+.+.|-|++||||++.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35678999999999999874
No 448
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.49 E-value=0.17 Score=40.89 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=17.1
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+=.++|+|.++.|||||+.
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~ 126 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLR 126 (329)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34579999999999999974
No 449
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=88.45 E-value=0.16 Score=38.43 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
=.++++|..++|||||..
T Consensus 37 e~~~i~G~nGsGKSTLl~ 54 (228)
T PRK10584 37 ETIALIGESGSGKSTLLA 54 (228)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999964
No 450
>PTZ00243 ABC transporter; Provisional
Probab=88.40 E-value=0.15 Score=49.24 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.5
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-+|||||.++.|||||+.
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~ 1354 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLL 1354 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44689999999999999974
No 451
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=88.36 E-value=0.17 Score=43.55 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=17.3
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
++-+++|+|.+++|||||+.
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVN 376 (571)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44689999999999999974
No 452
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=88.35 E-value=0.16 Score=39.55 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 37 e~~~i~G~nGsGKSTLl~ 54 (264)
T PRK14243 37 QITAFIGPSGCGKSTILR 54 (264)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999974
No 453
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.35 E-value=0.16 Score=40.10 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|.+++|||||+.
T Consensus 38 e~~~l~G~nGsGKSTLl~ 55 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQ 55 (289)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999974
No 454
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=88.31 E-value=0.17 Score=44.68 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-+++|||.++.|||||+.
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlk 497 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLR 497 (686)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999974
No 455
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=88.28 E-value=0.45 Score=38.88 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=26.5
Q ss_pred cCHHHHHHHHHhHhhc--C--------CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRN--K--------DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~--~--------~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|+++-.+.|.+++.. . +...+-.+.+.|.|++|||+|+.
T Consensus 125 ~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 4667766666665421 0 11234568999999999999874
No 456
>PRK06526 transposase; Provisional
Probab=88.25 E-value=0.32 Score=38.01 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.+.++|.|++|||+|+.
T Consensus 99 ~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred ceEEEEeCCCCchHHHHH
Confidence 579999999999999863
No 457
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=88.17 E-value=0.2 Score=44.47 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-+++|||.+++|||||+.
T Consensus 499 ~G~~vaIvG~SGsGKSTLlk 518 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAK 518 (708)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44689999999999999974
No 458
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.16 E-value=0.17 Score=39.39 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+=.++++|.++.|||||+.
T Consensus 42 Ge~~~i~G~nGsGKSTLl~ 60 (265)
T PRK14252 42 KQVTALIGPSGCGKSTFLR 60 (265)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3479999999999999974
No 459
>KOG0066|consensus
Probab=88.04 E-value=0.19 Score=42.63 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-||+|||..+||||||.+
T Consensus 614 SRiaIVGPNGVGKSTlLk 631 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLK 631 (807)
T ss_pred ceeEEECCCCccHHHHHH
Confidence 489999999999999853
No 460
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=88.01 E-value=0.19 Score=43.00 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=17.5
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
++-+++++|.++.|||||+.
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ 366 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLN 366 (529)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999974
No 461
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.99 E-value=0.4 Score=38.21 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 122 GAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 122 g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
|-+.+.+.|.+++..... --+.+.|-|++||||++.
T Consensus 19 g~~~~~~~L~~~~~~~~~---~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 19 GQDEVVERLSRAVDSPNL---PHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CCHHHHHHHHHHHhCCCC---ceEEEECCCCCCHHHHHH
Confidence 446667777776654321 137889999999999874
No 462
>PRK13531 regulatory ATPase RavA; Provisional
Probab=87.98 E-value=0.32 Score=41.59 Aligned_cols=35 Identities=17% Similarity=-0.041 Sum_probs=27.1
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-++..+.+...+-.. -.|.+.|.|++|||+|+.
T Consensus 23 ~gre~vI~lll~aalag-----~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 23 YERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred cCcHHHHHHHHHHHccC-----CCEEEECCCChhHHHHHH
Confidence 56677777776666433 469999999999999874
No 463
>PHA02624 large T antigen; Provisional
Probab=87.91 E-value=0.52 Score=41.36 Aligned_cols=18 Identities=11% Similarity=-0.149 Sum_probs=15.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.+.|-||+|||||+.
T Consensus 432 ~~il~~GPpnTGKTtf~~ 449 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAA 449 (647)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467778999999999863
No 464
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.88 E-value=0.2 Score=39.14 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||+.
T Consensus 39 Ge~~~l~G~nGsGKSTLl~ 57 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLR 57 (269)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999974
No 465
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=87.86 E-value=0.18 Score=41.77 Aligned_cols=20 Identities=25% Similarity=0.091 Sum_probs=17.6
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
..-++|+||.-++|||||.+
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~ 91 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTT 91 (398)
T ss_pred CCcEEEEECCcCcCHHHHHH
Confidence 45799999999999999964
No 466
>PLN02165 adenylate isopentenyltransferase
Probab=87.81 E-value=0.17 Score=41.20 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.-++|+|.+++|||||+.
T Consensus 44 ~iivIiGPTGSGKStLA~ 61 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSV 61 (334)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 468999999999999974
No 467
>KOG4658|consensus
Probab=87.80 E-value=0.38 Score=44.11 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+.-.+.+.+.+-..+ ...+++.||.+|||+||++
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~ 197 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLAR 197 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHH
Confidence 788888888888776543 2689999999999999974
No 468
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=87.79 E-value=0.2 Score=44.54 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-+++|||.++.|||||+.
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlk 523 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAK 523 (710)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44689999999999999974
No 469
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=87.78 E-value=0.18 Score=39.24 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 39 e~~~I~G~NGsGKSTLlk 56 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLR 56 (257)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999964
No 470
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=87.78 E-value=0.21 Score=38.92 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|.+++|||||+.
T Consensus 38 e~~~i~G~nGsGKSTLl~ 55 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLAR 55 (265)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999974
No 471
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.76 E-value=0.18 Score=39.57 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++|+|.+++|||||+.
T Consensus 47 Ge~~~I~G~nGsGKSTLl~ 65 (276)
T PRK14271 47 RAVTSLMGPTGSGKTTFLR 65 (276)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3479999999999999974
No 472
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=87.68 E-value=0.56 Score=39.02 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=23.3
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCccccc
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~ 159 (161)
...-.++..++.+++.. ++.--+.|.|.||+|||.+.
T Consensus 243 v~~i~Fl~~lk~~Lkg~--PKKnClvi~GPPdTGKS~F~ 279 (432)
T PF00519_consen 243 VEFISFLIALKQFLKGI--PKKNCLVIYGPPDTGKSMFC 279 (432)
T ss_dssp --HHHHHHHHHHHHHTB--TTSSEEEEESSCCCSHHHHH
T ss_pred ccHHHHHHHHHHHHhCC--CcccEEEEECCCCCchhHHH
Confidence 34445566666666432 23346788899999999764
No 473
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=87.65 E-value=0.19 Score=43.42 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-+|++||..++|||||+.
T Consensus 347 ~g~riaiiG~NG~GKSTLlk 366 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLK 366 (530)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34699999999999999974
No 474
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=87.60 E-value=0.21 Score=39.04 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.++.|||||+.
T Consensus 50 Ge~~~liG~NGsGKSTLlk 68 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSN 68 (264)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999964
No 475
>PLN03232 ABC transporter C family member; Provisional
Probab=87.59 E-value=0.2 Score=48.28 Aligned_cols=20 Identities=35% Similarity=0.230 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+=+|||||.++.|||||+.
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~ 1280 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLN 1280 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34689999999999999974
No 476
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.58 E-value=0.19 Score=38.92 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|.++.|||||..
T Consensus 39 e~~~i~G~nGsGKSTLl~ 56 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIR 56 (258)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999999964
No 477
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=87.58 E-value=2.6 Score=33.82 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=28.1
Q ss_pred cCHHHHHHHHHhHhhcCCCC-----------CceEEEEEeecCCCcccccCC
Q psy8220 121 VGAELLMLLLGNYTRNKDIK-----------TSITVGVVGECNIAGSIRDLE 161 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~-----------~~~~v~vvG~pNVGKSsl~~~ 161 (161)
....+|...|..|+...... -++=|.+.|.+|+|||.+++|
T Consensus 113 ~~ts~l~~~l~~yL~~~lA~~~~vHGvl~~I~GvGVLItG~SG~GKSElALe 164 (308)
T COG1493 113 LSTSELSFTLTNYLSRPLAERVNVHGVLLDIFGVGVLITGPSGAGKSELALE 164 (308)
T ss_pred chHHHHHHHHHHHhhhhcccceeeeeEEEEEeeeEEEEECCCCCCHhHHHHH
Confidence 34577778887777543211 135578889999999988764
No 478
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.56 E-value=0.19 Score=40.48 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||+.
T Consensus 52 Ge~~~I~G~nGsGKSTLl~ 70 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVT 70 (320)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999974
No 479
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=87.55 E-value=0.19 Score=48.47 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=15.7
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+=+|||||.++.|||||+.
T Consensus 1244 ~GekvaIvGrSGsGKSTLl~ 1263 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKSTLLS 1263 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34578888888888888864
No 480
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=87.53 E-value=0.55 Score=42.50 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=29.1
Q ss_pred cCHHHHHHHHHhHhhcC---CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK---DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~---~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+|.+...+.|.+++... ....+-.++++|.|++||||++.
T Consensus 325 ~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 325 YGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred cCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHH
Confidence 78999999888765421 11123358999999999999863
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.51 E-value=0.51 Score=40.30 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=16.0
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+-.+++||.++|||||++
T Consensus 256 g~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTT 273 (484)
T ss_pred CcEEEEECCCCccHHHHH
Confidence 457999999999999986
No 482
>PRK10867 signal recognition particle protein; Provisional
Probab=87.49 E-value=0.6 Score=39.36 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=16.3
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+..++++|.|+|||||++
T Consensus 99 ~p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CCEEEEEECCCCCcHHHHH
Confidence 3578899999999999965
No 483
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.42 E-value=0.22 Score=38.90 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|.+++|||||..
T Consensus 36 e~~~l~G~nGsGKSTLl~ 53 (271)
T PRK13632 36 EYVAILGHNGSGKSTISK 53 (271)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999964
No 484
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.39 E-value=0.2 Score=39.10 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
=.++++|.++.|||||..
T Consensus 36 e~~~I~G~nGsGKSTLl~ 53 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAK 53 (269)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999964
No 485
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.30 E-value=0.2 Score=39.26 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+=.++++|..+.|||||+.
T Consensus 46 Ge~~~IiG~nGsGKSTLl~ 64 (274)
T PRK14265 46 KKIIAFIGPSGCGKSTLLR 64 (274)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999974
No 486
>PLN03130 ABC transporter C family member; Provisional
Probab=87.28 E-value=0.2 Score=48.69 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+=+|||||.++.|||||+.
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~ 1283 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLN 1283 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34589999999999999974
No 487
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=87.27 E-value=0.23 Score=38.47 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++|+|.+++|||||+.
T Consensus 47 Ge~~~i~G~nGsGKSTLl~ 65 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSL 65 (257)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999974
No 488
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=87.18 E-value=0.23 Score=39.27 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||+.
T Consensus 63 Ge~~~liG~NGsGKSTLl~ 81 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLM 81 (282)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4579999999999999974
No 489
>PHA02774 E1; Provisional
Probab=87.09 E-value=0.61 Score=40.73 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=22.0
Q ss_pred HHHHHHHhHhhcCCCCCceEEEEEeecCCCccccc
Q psy8220 125 LLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 125 ~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~ 159 (161)
.++..|+.++.. .++.-.+.|.|.||+|||.|.
T Consensus 419 ~fl~~lk~~l~~--~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 419 SFLTALKDFLKG--IPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHHHHHHhc--CCcccEEEEECCCCCCHHHHH
Confidence 445555555542 222347888999999999874
No 490
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.08 E-value=0.65 Score=38.67 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHhHhh----------cCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTR----------NKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~----------~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+...+.|.+... ..+...+--+.+.|.|++|||+|+.
T Consensus 148 gGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 148 GGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 467777777766542 1122345678999999999999864
No 491
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=87.02 E-value=0.24 Score=38.60 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 40 e~~~i~G~NGsGKSTLl~ 57 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAK 57 (267)
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 479999999999999964
No 492
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=86.98 E-value=0.25 Score=37.30 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.9
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-+++|||..++|||||+.
T Consensus 39 ~QTlaiIG~NGSGKSTLak 57 (267)
T COG4167 39 GQTLAIIGENGSGKSTLAK 57 (267)
T ss_pred CcEEEEEccCCCcHhHHHH
Confidence 4689999999999999974
No 493
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=86.95 E-value=0.59 Score=34.20 Aligned_cols=43 Identities=28% Similarity=0.196 Sum_probs=26.4
Q ss_pred hhccEEEEEEeCCCCCC--CCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 23 EAADVILEVVDARDPMG--TRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
-.-+.++.|+|+..... .....+.+.+. -.=++|+||+|+++.
T Consensus 112 ~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~----~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 112 FRLDSIITVVDATNFDELENIPELLREQIA----FADVIVLNKIDLVSD 156 (178)
T ss_dssp ESESEEEEEEEGTTHGGHTTHCHHHHHHHC----T-SEEEEE-GGGHHH
T ss_pred ccccceeEEeccccccccccchhhhhhcch----hcCEEEEeccccCCh
Confidence 35678999999965321 12233444443 233789999999876
No 494
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.94 E-value=0.45 Score=35.06 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=14.8
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+-.+.+.|.|++|||.|+
T Consensus 47 ~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLA 64 (178)
T ss_dssp --EEEEEESTTSSHHHHH
T ss_pred CeEEEEEhhHhHHHHHHH
Confidence 357999999999999886
No 495
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.89 E-value=0.25 Score=38.40 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
=.++|+|.++.|||||+.
T Consensus 37 e~~~i~G~nGsGKSTLl~ 54 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLK 54 (257)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999974
No 496
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=86.82 E-value=0.24 Score=43.88 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=17.3
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-+++|||.++.|||||+.
T Consensus 490 ~G~~iaIvG~sGsGKSTLlk 509 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLK 509 (694)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34689999999999999974
No 497
>CHL00195 ycf46 Ycf46; Provisional
Probab=86.75 E-value=0.66 Score=39.72 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=26.9
Q ss_pred cCHHHHHHHHHhHhh-------cCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTR-------NKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~-------~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+.+.+++.+... ..+.+.+--+.+.|.|++|||.++.
T Consensus 231 gGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAk 277 (489)
T CHL00195 231 GGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred cCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 477777777765321 1122334458899999999999864
No 498
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=86.75 E-value=0.27 Score=42.64 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=17.2
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
++-+++|+|.++.|||||+.
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~ 379 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLIN 379 (588)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34589999999999999974
No 499
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=86.71 E-value=0.23 Score=37.98 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||..
T Consensus 47 Ge~~~i~G~NGsGKSTLl~ 65 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLK 65 (236)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4579999999999999964
No 500
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.69 E-value=0.45 Score=42.64 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=25.0
Q ss_pred ccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 120 CVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 120 ~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
-.|-++..+.+.+.+.... .-.+.++|-|+||||+|+.
T Consensus 184 ~igr~~ei~~~~~~L~~~~---~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 184 LIGREDELERTIQVLCRRK---KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred ccCcHHHHHHHHHHHhcCC---CCceEEECCCCCCHHHHHH
Confidence 3555555555555543321 2368899999999999863
Done!