Query psy8220
Match_columns 161
No_of_seqs 225 out of 1736
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 21:45:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 99.9 6.1E-25 2.1E-29 172.1 9.9 124 6-160 7-138 (282)
2 3cnl_A YLQF, putative uncharac 99.9 6.3E-23 2.2E-27 159.1 4.1 113 6-160 5-117 (262)
3 2hjg_A GTP-binding protein ENG 99.8 1.7E-19 5.7E-24 148.6 10.3 119 12-160 70-193 (436)
4 1mky_A Probable GTP-binding pr 99.8 1.3E-19 4.5E-24 149.4 9.3 121 12-160 69-198 (439)
5 3ec1_A YQEH GTPase; atnos1, at 99.8 2.6E-19 8.9E-24 144.9 8.6 118 13-160 60-180 (369)
6 3h2y_A GTPase family protein; 99.8 1.9E-19 6.5E-24 145.6 6.7 119 12-160 57-178 (368)
7 4dcu_A GTP-binding protein ENG 99.7 1.4E-17 4.7E-22 137.9 10.8 121 11-160 89-213 (456)
8 2yv5_A YJEQ protein; hydrolase 99.6 2.8E-16 9.6E-21 123.9 7.0 106 20-160 75-183 (302)
9 1t9h_A YLOQ, probable GTPase E 99.6 2.4E-17 8.1E-22 130.4 0.5 109 19-160 81-191 (307)
10 1u0l_A Probable GTPase ENGC; p 99.6 2.5E-15 8.6E-20 118.3 7.8 108 18-160 78-187 (301)
11 2rcn_A Probable GTPase ENGC; Y 99.6 2.1E-15 7.2E-20 121.4 6.9 107 19-160 125-233 (358)
12 3iev_A GTP-binding protein ERA 99.3 5.9E-12 2E-16 99.2 8.2 105 8-136 76-182 (308)
13 1x3s_A RAS-related protein RAB 99.3 3.9E-12 1.3E-16 92.2 5.9 111 17-157 80-194 (195)
14 1wf3_A GTP-binding protein; GT 99.3 1.2E-11 4.3E-16 97.2 8.7 103 5-135 67-172 (301)
15 3cb4_D GTP-binding protein LEP 99.2 2.6E-10 8.9E-15 97.3 13.4 129 5-160 78-211 (599)
16 4dhe_A Probable GTP-binding pr 99.2 1.3E-10 4.4E-15 86.2 9.1 95 21-137 112-212 (223)
17 3pqc_A Probable GTP-binding pr 99.1 3.7E-10 1.3E-14 81.5 10.8 101 14-136 91-194 (195)
18 1svi_A GTP-binding protein YSX 99.1 4.2E-10 1.4E-14 81.5 11.0 102 12-135 90-194 (195)
19 3t5g_A GTP-binding protein RHE 99.1 2.7E-11 9.3E-16 86.9 3.6 105 19-157 72-180 (181)
20 4dcu_A GTP-binding protein ENG 99.1 3.5E-10 1.2E-14 93.5 10.0 114 19-135 272-388 (456)
21 3sjy_A Translation initiation 99.1 6.1E-10 2.1E-14 90.6 10.5 126 6-155 83-213 (403)
22 2dyk_A GTP-binding protein; GT 99.1 5.4E-10 1.9E-14 78.3 8.5 91 14-134 69-160 (161)
23 1ega_A Protein (GTP-binding pr 99.0 1.2E-10 4.1E-15 91.5 4.7 95 14-134 78-173 (301)
24 2hjg_A GTP-binding protein ENG 99.0 1.5E-09 5.2E-14 89.1 10.1 114 19-135 252-368 (436)
25 1upt_A ARL1, ADP-ribosylation 99.0 2.1E-09 7.1E-14 76.0 7.6 100 15-136 65-169 (171)
26 1r8s_A ADP-ribosylation factor 98.9 4.4E-09 1.5E-13 73.9 8.9 100 14-135 57-161 (164)
27 1xzp_A Probable tRNA modificat 98.9 2.7E-09 9.2E-14 88.9 8.9 86 19-134 318-403 (482)
28 1wb1_A Translation elongation 98.9 4.5E-09 1.5E-13 87.6 9.0 105 6-135 81-188 (482)
29 1mky_A Probable GTP-binding pr 98.9 8.4E-09 2.9E-13 84.8 10.1 113 19-134 258-373 (439)
30 1ksh_A ARF-like protein 2; sma 98.9 3.7E-09 1.3E-13 76.0 6.9 102 14-137 75-181 (186)
31 3j2k_7 ERF3, eukaryotic polype 98.9 1.9E-08 6.3E-13 82.9 11.9 94 6-103 103-209 (439)
32 2b6h_A ADP-ribosylation factor 98.9 5.6E-09 1.9E-13 76.1 7.6 99 15-135 87-190 (192)
33 4bas_A ADP-ribosylation factor 98.9 2.8E-09 9.5E-14 77.3 5.6 100 15-136 77-189 (199)
34 3t1o_A Gliding protein MGLA; G 98.9 3.4E-09 1.2E-13 76.4 6.0 95 15-135 88-191 (198)
35 1zj6_A ADP-ribosylation factor 98.9 3.1E-09 1.1E-13 76.7 5.8 99 15-136 74-178 (187)
36 2il1_A RAB12; G-protein, GDP, 98.9 6.1E-09 2.1E-13 75.7 7.3 99 14-135 88-189 (192)
37 2lkc_A Translation initiation 98.8 7.9E-09 2.7E-13 73.5 7.5 94 19-136 73-171 (178)
38 3tkl_A RAS-related protein RAB 98.8 3.1E-09 1E-13 76.9 5.3 97 16-136 80-179 (196)
39 3kkq_A RAS-related protein M-R 98.8 4E-09 1.4E-13 75.6 5.9 93 18-135 83-181 (183)
40 1kk1_A EIF2gamma; initiation o 98.8 2.8E-08 9.7E-13 80.9 11.5 103 12-136 95-200 (410)
41 2x77_A ADP-ribosylation factor 98.8 1.2E-08 4.2E-13 73.6 8.4 97 19-137 84-185 (189)
42 1zd9_A ADP-ribosylation factor 98.8 1.7E-08 5.7E-13 73.0 9.0 100 14-135 80-184 (188)
43 2f7s_A C25KG, RAS-related prot 98.8 1.1E-08 3.8E-13 75.4 8.1 98 12-135 95-198 (217)
44 1s0u_A EIF-2-gamma, translatio 98.8 2.5E-08 8.6E-13 81.2 10.3 104 13-136 94-198 (408)
45 2h57_A ADP-ribosylation factor 98.8 5.5E-09 1.9E-13 75.5 5.7 97 16-135 82-186 (190)
46 2gj8_A MNME, tRNA modification 98.8 3.9E-09 1.3E-13 75.7 4.9 87 19-136 78-166 (172)
47 2g6b_A RAS-related protein RAB 98.8 2.4E-09 8.2E-14 76.4 3.5 99 14-136 73-174 (180)
48 4djt_A GTP-binding nuclear pro 98.8 7.5E-09 2.6E-13 76.4 6.1 94 19-136 79-175 (218)
49 3gee_A MNME, tRNA modification 98.8 7.3E-09 2.5E-13 86.2 6.5 87 19-135 307-397 (476)
50 1fzq_A ADP-ribosylation factor 98.8 2.1E-08 7.3E-13 72.2 8.3 100 14-135 73-177 (181)
51 1moz_A ARL1, ADP-ribosylation 98.8 1.1E-08 3.6E-13 73.2 6.5 98 17-136 78-180 (183)
52 3geh_A MNME, tRNA modification 98.8 7.1E-09 2.4E-13 86.0 6.2 87 19-136 298-384 (462)
53 1c1y_A RAS-related protein RAP 98.8 3.1E-08 1E-12 69.5 8.6 95 17-134 67-165 (167)
54 2qu8_A Putative nucleolar GTP- 98.8 5.1E-08 1.8E-12 72.7 10.3 95 20-135 104-204 (228)
55 1z0f_A RAB14, member RAS oncog 98.8 4.2E-09 1.4E-13 74.8 3.9 96 15-134 78-176 (179)
56 2efe_B Small GTP-binding prote 98.8 3.8E-09 1.3E-13 75.4 3.7 97 16-136 76-175 (181)
57 1jwy_B Dynamin A GTPase domain 98.8 2E-08 6.7E-13 78.5 7.9 59 10-69 153-213 (315)
58 4dsu_A GTPase KRAS, isoform 2B 98.8 3.5E-09 1.2E-13 76.0 3.3 96 15-135 66-165 (189)
59 3dz8_A RAS-related protein RAB 98.8 5.3E-09 1.8E-13 75.8 4.3 99 13-135 84-185 (191)
60 2h17_A ADP-ribosylation factor 98.8 1E-08 3.5E-13 73.6 5.8 95 16-132 80-179 (181)
61 3tr5_A RF-3, peptide chain rel 98.8 4.6E-08 1.6E-12 82.3 10.6 51 18-69 99-149 (528)
62 1u8z_A RAS-related protein RAL 98.8 1.7E-08 5.9E-13 70.6 6.7 97 15-135 66-166 (168)
63 1g16_A RAS-related protein SEC 98.8 3.9E-09 1.3E-13 74.3 3.4 94 18-136 69-165 (170)
64 3bc1_A RAS-related protein RAB 98.8 6.8E-09 2.3E-13 74.5 4.7 98 14-135 83-184 (195)
65 3clv_A RAB5 protein, putative; 98.7 1.1E-08 3.8E-13 73.8 5.5 95 16-135 108-203 (208)
66 1kao_A RAP2A; GTP-binding prot 98.7 2.6E-09 8.7E-14 74.9 2.0 95 16-135 66-165 (167)
67 2ce2_X GTPase HRAS; signaling 98.7 1.5E-08 5.2E-13 70.7 6.0 94 17-135 67-164 (166)
68 2ywe_A GTP-binding protein LEP 98.7 4.9E-08 1.7E-12 83.3 10.2 105 5-136 80-184 (600)
69 3q72_A GTP-binding protein RAD 98.7 8.4E-09 2.9E-13 72.5 4.6 98 14-135 62-163 (166)
70 3i8s_A Ferrous iron transport 98.7 5.6E-10 1.9E-14 86.5 -1.8 89 20-136 81-169 (274)
71 2c78_A Elongation factor TU-A; 98.7 1.2E-08 4E-13 83.0 6.0 126 6-135 83-211 (405)
72 1z0j_A RAB-22, RAS-related pro 98.7 3.3E-09 1.1E-13 74.7 2.3 96 16-135 70-168 (170)
73 3iby_A Ferrous iron transport 98.7 1.2E-09 4.2E-14 83.8 -0.0 83 23-133 82-164 (256)
74 3izy_P Translation initiation 98.7 1.1E-08 3.8E-13 86.2 5.3 121 19-159 70-211 (537)
75 1f6b_A SAR1; gtpases, N-termin 98.7 8.5E-09 2.9E-13 75.5 4.1 97 15-133 83-196 (198)
76 1r2q_A RAS-related protein RAB 98.7 7E-09 2.4E-13 72.9 3.4 97 15-135 69-168 (170)
77 3c5h_A Glucocorticoid receptor 98.7 2.3E-08 7.9E-13 76.4 6.5 86 24-134 162-253 (255)
78 1lnz_A SPO0B-associated GTP-bi 98.7 1.9E-08 6.4E-13 80.5 6.0 93 19-137 231-331 (342)
79 3o47_A ADP-ribosylation factor 98.7 2.6E-08 9E-13 79.0 6.8 99 16-136 224-327 (329)
80 1ek0_A Protein (GTP-binding pr 98.7 1.9E-08 6.5E-13 70.6 5.4 99 16-135 67-168 (170)
81 2erx_A GTP-binding protein DI- 98.7 5.7E-09 2E-13 73.5 2.6 97 16-136 66-167 (172)
82 2a9k_A RAS-related protein RAL 98.7 9.8E-09 3.3E-13 73.3 3.8 95 16-135 81-180 (187)
83 3tw8_B RAS-related protein RAB 98.7 7.8E-09 2.7E-13 73.5 3.1 93 19-135 76-170 (181)
84 3lvq_E ARF-GAP with SH3 domain 98.7 3.1E-08 1E-12 82.3 7.1 100 16-137 381-485 (497)
85 3reg_A RHO-like small GTPase; 98.7 2.7E-08 9.3E-13 72.1 6.0 101 15-137 85-189 (194)
86 1zbd_A Rabphilin-3A; G protein 98.7 9E-09 3.1E-13 75.1 3.4 97 14-134 70-169 (203)
87 2gf9_A RAS-related protein RAB 98.7 6.5E-09 2.2E-13 75.1 2.6 94 18-135 88-184 (189)
88 2fn4_A P23, RAS-related protei 98.7 1.3E-08 4.6E-13 72.2 4.2 94 18-136 74-172 (181)
89 3qq5_A Small GTP-binding prote 98.7 1E-08 3.6E-13 84.1 4.0 89 19-136 108-196 (423)
90 1m2o_B GTP-binding protein SAR 98.7 2.4E-08 8E-13 72.6 5.3 96 16-133 82-189 (190)
91 2fu5_C RAS-related protein RAB 98.7 5E-09 1.7E-13 75.0 1.6 98 14-135 70-170 (183)
92 2oil_A CATX-8, RAS-related pro 98.7 2.4E-08 8.2E-13 72.2 5.2 95 17-135 90-187 (193)
93 2gf0_A GTP-binding protein DI- 98.7 1.3E-08 4.6E-13 73.6 3.7 96 16-136 71-171 (199)
94 1ky3_A GTP-binding protein YPT 98.7 5.3E-08 1.8E-12 69.2 6.8 100 14-135 71-177 (182)
95 2fg5_A RAB-22B, RAS-related pr 98.7 1.2E-08 3.9E-13 74.1 3.3 97 16-136 87-186 (192)
96 2hup_A RAS-related protein RAB 98.7 1.8E-08 6.1E-13 73.9 4.3 99 14-136 91-193 (201)
97 3con_A GTPase NRAS; structural 98.7 1.8E-08 6.3E-13 72.6 4.3 98 14-136 82-183 (190)
98 2iwr_A Centaurin gamma 1; ANK 98.7 9.4E-08 3.2E-12 68.0 8.0 93 21-134 69-167 (178)
99 3ihw_A Centg3; RAS, centaurin, 98.6 8E-08 2.7E-12 69.5 7.7 94 21-135 82-179 (184)
100 3oes_A GTPase rhebl1; small GT 98.6 5.9E-09 2E-13 76.2 1.6 95 19-137 90-188 (201)
101 1wms_A RAB-9, RAB9, RAS-relate 98.6 4.9E-08 1.7E-12 69.3 6.4 99 14-136 69-174 (177)
102 2e87_A Hypothetical protein PH 98.6 1.1E-10 3.9E-15 93.5 -8.3 111 25-160 58-185 (357)
103 2elf_A Protein translation elo 98.6 8.1E-08 2.8E-12 77.5 8.3 104 5-135 67-179 (370)
104 3cph_A RAS-related protein SEC 98.6 1.5E-08 5.1E-13 74.2 3.6 94 17-135 85-181 (213)
105 2bcg_Y Protein YP2, GTP-bindin 98.6 2.1E-08 7.3E-13 73.3 4.4 95 17-135 73-170 (206)
106 3q85_A GTP-binding protein REM 98.6 3E-08 1E-12 69.8 5.0 93 19-135 70-166 (169)
107 1z08_A RAS-related protein RAB 98.6 6.9E-09 2.3E-13 73.2 1.6 98 14-135 68-168 (170)
108 2e87_A Hypothetical protein PH 98.6 2.1E-07 7.3E-12 74.4 10.5 90 20-135 242-335 (357)
109 2y8e_A RAB-protein 6, GH09086P 98.6 1E-08 3.4E-13 72.8 2.1 95 17-135 79-176 (179)
110 2bme_A RAB4A, RAS-related prot 98.6 1.3E-08 4.5E-13 72.9 2.7 98 14-135 72-172 (186)
111 2hxs_A RAB-26, RAS-related pro 98.6 1.7E-08 5.9E-13 71.7 3.3 97 17-137 72-174 (178)
112 2p5s_A RAS and EF-hand domain 98.6 5.7E-08 2E-12 70.8 6.1 99 15-135 91-196 (199)
113 2a5j_A RAS-related protein RAB 98.6 1.7E-08 5.8E-13 73.1 3.2 94 18-135 87-183 (191)
114 2yc2_C IFT27, small RAB-relate 98.6 3.4E-08 1.2E-12 71.8 4.8 97 14-134 86-190 (208)
115 3bwd_D RAC-like GTP-binding pr 98.6 2.4E-08 8.2E-13 71.2 3.9 98 16-134 71-179 (182)
116 1d2e_A Elongation factor TU (E 98.6 6.7E-08 2.3E-12 78.5 7.0 119 6-136 74-195 (397)
117 2ew1_A RAS-related protein RAB 98.6 1.4E-08 4.8E-13 74.8 2.7 98 14-135 88-188 (201)
118 2nzj_A GTP-binding protein REM 98.6 3.1E-08 1.1E-12 70.0 4.4 93 19-135 72-168 (175)
119 1vg8_A RAS-related protein RAB 98.6 3.8E-08 1.3E-12 71.7 4.9 93 19-135 75-174 (207)
120 3a1s_A Iron(II) transport prot 98.6 7.5E-09 2.6E-13 79.5 1.0 85 23-135 82-166 (258)
121 2bov_A RAla, RAS-related prote 98.6 1.3E-07 4.4E-12 68.7 7.6 95 16-134 77-175 (206)
122 2j1l_A RHO-related GTP-binding 98.6 3.8E-08 1.3E-12 72.7 4.7 101 14-136 95-209 (214)
123 4gzl_A RAS-related C3 botulinu 98.6 2.2E-08 7.6E-13 73.5 3.3 97 16-133 93-202 (204)
124 2wji_A Ferrous iron transport 98.6 9.7E-09 3.3E-13 72.9 1.2 84 23-134 80-163 (165)
125 2atx_A Small GTP binding prote 98.6 7.2E-08 2.5E-12 69.7 5.7 97 17-134 82-191 (194)
126 2atv_A RERG, RAS-like estrogen 98.6 4.1E-08 1.4E-12 71.3 4.4 95 17-135 91-190 (196)
127 1z2a_A RAS-related protein RAB 98.6 6.5E-08 2.2E-12 67.8 5.3 94 18-135 71-166 (168)
128 2o52_A RAS-related protein RAB 98.6 1.8E-08 6E-13 73.8 2.0 97 15-135 88-187 (200)
129 1z06_A RAS-related protein RAB 98.6 4.7E-08 1.6E-12 70.5 4.2 98 16-134 85-186 (189)
130 3q3j_B RHO-related GTP-binding 98.5 7.1E-08 2.4E-12 71.4 5.0 99 16-136 90-203 (214)
131 3zvr_A Dynamin-1; hydrolase, D 98.5 1.2E-07 4.1E-12 82.8 7.0 78 23-106 186-265 (772)
132 1mh1_A RAC1; GTP-binding, GTPa 98.5 3.7E-08 1.3E-12 70.3 3.1 99 16-136 68-180 (186)
133 3l0i_B RAS-related protein RAB 98.5 9.3E-09 3.2E-13 75.0 -0.1 94 19-136 100-196 (199)
134 1zun_B Sulfate adenylate trans 98.5 2.2E-07 7.4E-12 76.3 7.8 92 6-103 112-208 (434)
135 1g7s_A Translation initiation 98.5 2E-07 6.7E-12 79.5 7.7 48 20-68 89-136 (594)
136 3th5_A RAS-related C3 botulinu 97.9 1.1E-08 3.8E-13 74.8 0.0 102 14-133 91-202 (204)
137 2q3h_A RAS homolog gene family 98.5 8.6E-08 3E-12 69.7 4.7 97 18-135 85-194 (201)
138 2gco_A H9, RHO-related GTP-bin 98.5 9.3E-08 3.2E-12 69.8 4.9 97 16-134 88-198 (201)
139 3cbq_A GTP-binding protein REM 98.5 2E-07 6.8E-12 68.0 6.6 94 19-136 91-188 (195)
140 3k53_A Ferrous iron transport 98.5 2.7E-08 9.3E-13 76.5 1.5 88 22-137 79-167 (271)
141 2qtf_A Protein HFLX, GTP-bindi 98.5 5.7E-07 1.9E-11 72.4 9.1 104 12-136 246-354 (364)
142 3p32_A Probable GTPase RV1496/ 98.5 8.9E-08 3E-12 76.6 4.4 90 20-135 188-283 (355)
143 3p26_A Elongation factor 1 alp 98.5 2.2E-07 7.7E-12 77.2 6.9 94 6-103 119-222 (483)
144 2j0v_A RAC-like GTP-binding pr 98.5 4.4E-08 1.5E-12 71.9 2.3 99 17-136 73-180 (212)
145 2cxx_A Probable GTP-binding pr 98.5 1.2E-06 4E-11 62.7 9.6 90 22-137 80-185 (190)
146 2fv8_A H6, RHO-related GTP-bin 98.5 1.5E-07 5.1E-12 69.0 4.9 98 17-136 89-200 (207)
147 3cpj_B GTP-binding protein YPT 98.5 4.8E-08 1.6E-12 72.6 2.2 96 17-136 78-176 (223)
148 2aka_B Dynamin-1; fusion prote 98.5 1.7E-07 5.7E-12 72.5 5.1 115 13-134 150-280 (299)
149 3gj0_A GTP-binding nuclear pro 98.4 5.6E-08 1.9E-12 72.0 2.0 92 19-136 82-175 (221)
150 3llu_A RAS-related GTP-binding 98.4 2.3E-07 7.9E-12 67.4 5.2 50 20-69 91-144 (196)
151 2j69_A Bacterial dynamin-like 98.4 3.2E-07 1.1E-11 79.6 6.8 54 15-69 191-245 (695)
152 2zej_A Dardarin, leucine-rich 98.4 4.7E-07 1.6E-11 65.1 6.7 101 15-136 70-178 (184)
153 3b1v_A Ferrous iron uptake tra 98.4 1.6E-08 5.5E-13 78.3 -1.4 85 23-135 79-163 (272)
154 1m7b_A RND3/RHOE small GTP-bin 98.4 1.5E-07 5.1E-12 67.6 3.7 97 17-134 71-181 (184)
155 1dar_A EF-G, elongation factor 98.4 1.3E-06 4.5E-11 75.6 10.0 50 19-69 95-144 (691)
156 3avx_A Elongation factor TS, e 98.4 1.1E-06 3.8E-11 79.7 9.3 117 6-135 367-485 (1289)
157 2wjg_A FEOB, ferrous iron tran 98.4 6.9E-08 2.4E-12 69.3 1.3 87 23-137 84-170 (188)
158 1f60_A Elongation factor EEF1A 98.4 3E-07 1E-11 76.0 5.1 96 5-104 92-197 (458)
159 2xex_A Elongation factor G; GT 98.4 1.6E-06 5.4E-11 75.2 9.4 50 19-69 93-142 (693)
160 1gwn_A RHO-related GTP-binding 98.4 2.2E-07 7.5E-12 68.4 3.5 97 17-134 92-202 (205)
161 2rdo_7 EF-G, elongation factor 98.3 3.6E-06 1.2E-10 73.0 11.3 61 5-69 89-149 (704)
162 3vqt_A RF-3, peptide chain rel 98.3 1.5E-06 5.2E-11 73.4 8.7 61 5-69 107-167 (548)
163 3t5d_A Septin-7; GTP-binding p 98.3 6.5E-07 2.2E-11 68.9 5.9 87 25-135 116-203 (274)
164 1jny_A EF-1-alpha, elongation 98.3 8.8E-07 3E-11 72.7 6.9 94 6-103 92-197 (435)
165 3mca_A HBS1, elongation factor 98.3 1.4E-07 4.9E-12 80.3 1.8 97 20-136 274-397 (592)
166 2h5e_A Peptide chain release f 98.3 4.4E-06 1.5E-10 70.3 10.8 50 19-69 100-149 (529)
167 3c5c_A RAS-like protein 12; GD 98.3 7.9E-07 2.7E-11 64.2 5.5 92 20-135 87-185 (187)
168 3dpu_A RAB family protein; roc 98.3 3.1E-07 1.1E-11 77.1 3.7 92 19-136 116-208 (535)
169 4dkx_A RAS-related protein RAB 98.3 7.1E-07 2.4E-11 66.7 5.0 96 16-135 77-175 (216)
170 2wkq_A NPH1-1, RAS-related C3 98.3 4.3E-07 1.5E-11 70.8 3.7 98 16-135 218-329 (332)
171 3izq_1 HBS1P, elongation facto 98.3 6.3E-07 2.1E-11 76.7 5.0 95 5-103 252-356 (611)
172 2fh5_B SR-beta, signal recogni 98.3 2.2E-06 7.6E-11 62.7 6.9 53 17-69 71-130 (214)
173 2xtp_A GTPase IMAP family memb 98.2 7.3E-07 2.5E-11 67.7 4.3 95 19-136 100-208 (260)
174 1zo1_I IF2, translation initia 98.2 4E-07 1.4E-11 76.1 3.1 91 19-133 69-164 (501)
175 3j25_A Tetracycline resistance 98.2 1.6E-06 5.3E-11 74.5 6.4 61 5-69 74-134 (638)
176 1r5b_A Eukaryotic peptide chai 98.2 1.3E-06 4.6E-11 72.3 5.7 94 6-104 129-237 (467)
177 1yrb_A ATP(GTP)binding protein 98.2 3.2E-06 1.1E-10 64.0 7.3 93 20-136 134-257 (262)
178 2dy1_A Elongation factor G; tr 98.2 7E-06 2.4E-10 70.8 9.8 52 14-67 88-139 (665)
179 3t34_A Dynamin-related protein 98.2 2.4E-06 8.3E-11 68.2 6.4 115 12-134 160-291 (360)
180 2g3y_A GTP-binding protein GEM 98.2 4.8E-06 1.6E-10 61.9 7.4 92 20-135 107-202 (211)
181 1pui_A ENGB, probable GTP-bind 98.2 1.3E-05 4.5E-10 58.3 9.2 94 21-136 105-199 (210)
182 2p67_A LAO/AO transport system 98.1 2.8E-06 9.6E-11 67.5 5.7 89 21-135 166-260 (341)
183 2www_A Methylmalonic aciduria 98.1 4.1E-06 1.4E-10 66.9 6.5 90 20-135 183-278 (349)
184 3lxw_A GTPase IMAP family memb 98.1 7.8E-06 2.7E-10 62.0 7.0 100 20-137 101-209 (247)
185 3r7w_A Gtpase1, GTP-binding pr 98.1 4E-06 1.4E-10 65.7 5.4 55 15-69 71-130 (307)
186 2x2e_A Dynamin-1; nitration, h 98.1 1.8E-06 6.1E-11 68.9 3.2 116 13-134 155-285 (353)
187 2cjw_A GTP-binding protein GEM 98.1 3E-06 1E-10 61.5 4.1 90 21-134 77-170 (192)
188 2wsm_A Hydrogenase expression/ 98.0 5.8E-06 2E-10 60.8 5.1 84 25-135 130-213 (221)
189 4fn5_A EF-G 1, elongation fact 98.0 2.4E-05 8.1E-10 67.9 9.5 61 5-69 92-152 (709)
190 1udx_A The GTP-binding protein 98.0 1.3E-05 4.3E-10 65.7 7.1 92 20-137 231-326 (416)
191 2qag_A Septin-2, protein NEDD5 98.0 8.1E-06 2.8E-10 65.4 5.1 68 25-103 146-218 (361)
192 1wxq_A GTP-binding protein; st 97.9 7E-07 2.4E-11 72.7 -1.7 41 54-103 214-254 (397)
193 3l82_B F-box only protein 4; T 97.9 8.9E-05 3E-09 55.5 9.4 103 12-136 113-223 (227)
194 2qpt_A EH domain-containing pr 97.9 2.1E-05 7.3E-10 66.4 6.7 55 14-69 178-233 (550)
195 3lxx_A GTPase IMAP family memb 97.8 2.2E-05 7.6E-10 58.8 5.3 100 19-136 107-214 (239)
196 1nrj_B SR-beta, signal recogni 97.8 2.4E-05 8.1E-10 57.3 4.7 49 21-69 79-135 (218)
197 4a9a_A Ribosome-interacting GT 97.7 4.5E-06 1.5E-10 67.5 -0.9 18 143-160 73-90 (376)
198 2qm8_A GTPase/ATPase; G protei 97.7 9.2E-05 3.1E-09 58.8 6.7 90 21-135 165-260 (337)
199 2f9l_A RAB11B, member RAS onco 97.5 6.2E-05 2.1E-09 54.5 3.5 92 19-134 72-166 (199)
200 2ged_A SR-beta, signal recogni 97.5 3.6E-05 1.2E-09 55.1 2.0 40 121-160 24-66 (193)
201 1cip_A Protein (guanine nucleo 97.4 3.3E-05 1.1E-09 61.8 1.1 104 14-135 206-343 (353)
202 2hf9_A Probable hydrogenase ni 97.4 0.00034 1.2E-08 51.4 6.3 60 54-135 164-223 (226)
203 3dpu_A RAB family protein; roc 97.4 8E-05 2.7E-09 62.4 3.2 40 121-160 14-59 (535)
204 3l2o_B F-box only protein 4; s 97.3 0.00085 2.9E-08 52.5 8.3 102 13-136 199-308 (312)
205 1zcb_A G alpha I/13; GTP-bindi 97.3 8E-05 2.7E-09 59.8 2.6 55 13-67 213-281 (362)
206 2www_A Methylmalonic aciduria 97.3 6E-05 2.1E-09 60.1 1.1 20 141-160 73-92 (349)
207 2qnr_A Septin-2, protein NEDD5 97.3 0.00019 6.3E-09 56.1 3.8 98 24-151 126-224 (301)
208 2qag_C Septin-7; cell cycle, c 97.3 0.00017 5.9E-09 58.9 3.6 73 24-103 138-211 (418)
209 1f5n_A Interferon-induced guan 97.2 9.5E-05 3.3E-09 63.0 1.4 20 141-160 37-56 (592)
210 1xzp_A Probable tRNA modificat 97.2 3E-05 1E-09 64.5 -1.7 20 141-160 242-261 (482)
211 3gee_A MNME, tRNA modification 97.2 5.6E-05 1.9E-09 62.8 -0.1 20 141-160 232-251 (476)
212 2ged_A SR-beta, signal recogni 97.2 0.00039 1.3E-08 49.6 4.3 51 19-69 113-171 (193)
213 2g3y_A GTP-binding protein GEM 97.1 9.3E-05 3.2E-09 54.8 0.8 20 141-160 36-55 (211)
214 2qtf_A Protein HFLX, GTP-bindi 97.1 0.00013 4.4E-09 58.6 1.6 19 142-160 178-197 (364)
215 1oix_A RAS-related protein RAB 97.1 0.00026 8.8E-09 51.0 2.6 91 19-133 96-189 (191)
216 3def_A T7I23.11 protein; chlor 97.0 0.00035 1.2E-08 53.1 3.2 20 141-160 35-54 (262)
217 3r7w_B Gtpase2, GTP-binding pr 97.0 0.0016 5.6E-08 51.6 7.1 51 19-69 67-121 (331)
218 1h65_A Chloroplast outer envel 97.0 0.00035 1.2E-08 53.3 3.1 20 141-160 38-57 (270)
219 3geh_A MNME, tRNA modification 97.0 7.4E-05 2.5E-09 61.8 -0.9 20 141-160 223-242 (462)
220 2hf9_A Probable hydrogenase ni 96.9 0.0005 1.7E-08 50.5 3.0 19 142-160 38-56 (226)
221 1n0u_A EF-2, elongation factor 96.9 0.00052 1.8E-08 60.7 3.2 48 19-67 116-163 (842)
222 2j69_A Bacterial dynamin-like 96.9 0.00043 1.5E-08 59.9 2.6 33 123-160 55-87 (695)
223 1lnz_A SPO0B-associated GTP-bi 96.8 0.00017 5.8E-09 57.4 -0.1 17 144-160 160-176 (342)
224 1ko7_A HPR kinase/phosphatase; 96.8 0.00076 2.6E-08 53.1 3.4 76 55-160 80-162 (314)
225 2wkq_A NPH1-1, RAS-related C3 96.8 0.00072 2.5E-08 52.3 3.1 19 141-159 154-172 (332)
226 3o47_A ADP-ribosylation factor 96.7 0.00043 1.5E-08 54.5 1.3 19 142-160 165-183 (329)
227 3lvq_E ARF-GAP with SH3 domain 96.6 0.00044 1.5E-08 57.2 0.9 20 141-160 321-340 (497)
228 3p32_A Probable GTPase RV1496/ 96.5 0.0014 4.9E-08 52.0 3.3 20 141-160 78-97 (355)
229 1h65_A Chloroplast outer envel 96.5 0.001 3.4E-08 50.7 2.2 47 23-69 118-169 (270)
230 2qag_B Septin-6, protein NEDD5 96.5 0.0014 4.7E-08 53.7 2.9 41 27-69 151-191 (427)
231 1tq4_A IIGP1, interferon-induc 96.4 0.0014 4.9E-08 53.4 2.8 18 143-160 70-87 (413)
232 2xtz_A Guanine nucleotide-bind 96.4 0.00048 1.7E-08 55.1 -0.2 54 14-67 196-263 (354)
233 3ohm_A Guanine nucleotide-bind 96.2 0.0031 1.1E-07 49.8 3.5 57 12-68 178-248 (327)
234 1azs_C GS-alpha; complex (lyas 96.2 0.001 3.5E-08 54.1 0.6 55 14-68 230-298 (402)
235 3izq_1 HBS1P, elongation facto 96.1 0.0012 4.2E-08 56.4 0.9 21 140-160 165-185 (611)
236 2qpt_A EH domain-containing pr 96.1 0.0013 4.5E-08 55.5 0.9 19 142-160 65-83 (550)
237 2dby_A GTP-binding protein; GD 96.0 0.029 9.8E-07 45.0 8.4 76 54-135 201-283 (368)
238 3def_A T7I23.11 protein; chlor 96.0 0.0028 9.6E-08 48.0 2.4 57 12-69 103-166 (262)
239 2qm8_A GTPase/ATPase; G protei 96.0 0.0019 6.5E-08 51.1 1.2 20 141-160 54-73 (337)
240 4a9a_A Ribosome-interacting GT 95.9 0.0044 1.5E-07 49.9 3.1 52 14-67 140-195 (376)
241 3mca_A HBS1, elongation factor 95.9 0.0025 8.7E-08 54.2 1.6 20 141-160 176-195 (592)
242 2p67_A LAO/AO transport system 95.8 0.0025 8.6E-08 50.4 1.4 20 141-160 55-74 (341)
243 1udx_A The GTP-binding protein 95.8 0.0015 5.2E-08 53.3 -0.1 18 143-160 158-175 (416)
244 4fid_A G protein alpha subunit 95.7 0.0031 1.1E-07 50.1 1.5 57 12-68 172-242 (340)
245 2j37_W Signal recognition part 95.7 0.03 1E-06 46.8 7.2 42 24-69 213-255 (504)
246 2qag_B Septin-6, protein NEDD5 95.6 0.0028 9.7E-08 51.9 0.7 18 143-160 43-60 (427)
247 2qag_A Septin-2, protein NEDD5 95.4 0.0024 8.1E-08 51.0 -0.2 19 142-160 37-55 (361)
248 3ec2_A DNA replication protein 95.3 0.0062 2.1E-07 43.1 1.8 38 123-160 19-56 (180)
249 3sop_A Neuronal-specific septi 95.3 0.019 6.5E-07 43.9 4.5 46 22-69 109-155 (270)
250 2j37_W Signal recognition part 95.1 0.012 4.1E-07 49.2 3.2 20 141-160 100-119 (504)
251 3tqc_A Pantothenate kinase; bi 95.1 0.013 4.6E-07 46.1 3.2 37 124-160 74-110 (321)
252 3q5d_A Atlastin-1; G protein, 94.9 0.0048 1.7E-07 50.8 0.2 19 142-160 67-85 (447)
253 2v3c_C SRP54, signal recogniti 94.7 0.019 6.6E-07 46.9 3.2 19 142-160 99-117 (432)
254 2a5y_B CED-4; apoptosis; HET: 94.7 0.013 4.4E-07 49.1 2.2 40 121-160 131-170 (549)
255 1jbk_A CLPB protein; beta barr 94.6 0.017 5.9E-07 40.2 2.4 37 121-160 25-61 (195)
256 1jal_A YCHF protein; nucleotid 94.5 0.38 1.3E-05 38.4 10.3 75 54-135 199-278 (363)
257 3zvr_A Dynamin-1; hydrolase, D 94.4 0.02 6.9E-07 50.1 2.9 40 121-160 24-69 (772)
258 1r5b_A Eukaryotic peptide chai 94.3 0.0086 2.9E-07 49.4 0.3 19 141-159 42-60 (467)
259 1tq4_A IIGP1, interferon-induc 94.2 0.13 4.3E-06 41.9 6.9 97 22-136 146-253 (413)
260 1sq5_A Pantothenate kinase; P- 94.2 0.032 1.1E-06 43.3 3.3 20 141-160 79-98 (308)
261 2p65_A Hypothetical protein PF 94.0 0.022 7.4E-07 39.7 1.9 37 121-160 25-61 (187)
262 1tue_A Replication protein E1; 93.6 0.04 1.4E-06 40.8 2.7 38 121-160 39-76 (212)
263 2chg_A Replication factor C sm 93.5 0.038 1.3E-06 39.4 2.5 37 121-160 20-56 (226)
264 2f6r_A COA synthase, bifunctio 93.4 0.024 8.2E-07 43.5 1.3 20 141-160 74-93 (281)
265 3e70_C DPA, signal recognition 93.4 0.049 1.7E-06 42.9 3.1 20 141-160 128-147 (328)
266 1bif_A 6-phosphofructo-2-kinas 93.2 0.023 8E-07 46.7 1.1 19 142-160 39-57 (469)
267 1z6t_A APAF-1, apoptotic prote 93.2 0.034 1.2E-06 46.5 2.0 39 121-160 127-165 (591)
268 3b9q_A Chloroplast SRP recepto 93.1 0.061 2.1E-06 41.8 3.2 20 141-160 99-118 (302)
269 1njg_A DNA polymerase III subu 93.0 0.047 1.6E-06 39.3 2.2 38 121-160 26-63 (250)
270 3avx_A Elongation factor TS, e 92.8 0.069 2.3E-06 49.0 3.5 21 140-160 294-314 (1289)
271 3dm5_A SRP54, signal recogniti 92.8 0.61 2.1E-05 38.3 8.8 45 22-69 210-254 (443)
272 3syl_A Protein CBBX; photosynt 92.8 0.037 1.3E-06 42.3 1.5 19 142-160 67-85 (309)
273 1vma_A Cell division protein F 92.8 0.075 2.6E-06 41.4 3.3 19 141-159 103-121 (306)
274 3aez_A Pantothenate kinase; tr 92.7 0.032 1.1E-06 43.6 1.2 21 140-160 88-108 (312)
275 3dm5_A SRP54, signal recogniti 92.7 0.08 2.7E-06 43.5 3.5 19 141-159 99-117 (443)
276 3t15_A Ribulose bisphosphate c 92.6 0.051 1.7E-06 41.8 2.1 31 130-160 24-54 (293)
277 2w58_A DNAI, primosome compone 92.6 0.072 2.4E-06 38.1 2.8 38 123-160 34-72 (202)
278 2px0_A Flagellar biosynthesis 92.5 0.069 2.4E-06 41.3 2.8 19 141-159 104-122 (296)
279 3bos_A Putative DNA replicatio 92.4 0.074 2.5E-06 38.6 2.7 34 124-160 37-70 (242)
280 1cr0_A DNA primase/helicase; R 92.2 0.027 9.4E-07 43.0 0.2 18 143-160 36-53 (296)
281 2v9p_A Replication protein E1; 92.2 0.036 1.2E-06 43.3 0.8 19 142-160 126-144 (305)
282 2og2_A Putative signal recogni 92.1 0.098 3.4E-06 41.7 3.3 20 141-160 156-175 (359)
283 3h4m_A Proteasome-activating n 92.0 0.055 1.9E-06 40.8 1.7 40 121-160 20-69 (285)
284 2kjq_A DNAA-related protein; s 92.0 0.04 1.4E-06 38.2 0.8 18 143-160 37-54 (149)
285 2yhs_A FTSY, cell division pro 91.9 0.11 3.6E-06 43.4 3.3 20 141-160 292-311 (503)
286 1fnn_A CDC6P, cell division co 91.7 0.1 3.5E-06 40.8 2.9 17 144-160 46-62 (389)
287 3cf0_A Transitional endoplasmi 91.7 0.07 2.4E-06 41.0 1.9 40 121-160 18-67 (301)
288 2qby_B CDC6 homolog 3, cell di 91.5 0.12 4E-06 40.5 3.1 18 143-160 46-63 (384)
289 2v3c_C SRP54, signal recogniti 91.5 0.2 7E-06 40.8 4.6 42 24-69 210-253 (432)
290 1zu4_A FTSY; GTPase, signal re 91.5 0.14 4.7E-06 40.1 3.5 19 141-159 104-122 (320)
291 1lv7_A FTSH; alpha/beta domain 91.5 0.071 2.4E-06 39.7 1.7 18 143-160 46-63 (257)
292 3pxg_A Negative regulator of g 91.4 0.099 3.4E-06 42.9 2.7 38 120-160 182-219 (468)
293 1sxj_E Activator 1 40 kDa subu 91.4 0.073 2.5E-06 41.4 1.7 37 121-160 17-54 (354)
294 1d2n_A N-ethylmaleimide-sensit 91.3 0.13 4.6E-06 38.6 3.1 20 141-160 63-82 (272)
295 3nwj_A ATSK2; P loop, shikimat 91.2 0.048 1.7E-06 41.3 0.5 18 143-160 49-66 (250)
296 1ixz_A ATP-dependent metallopr 91.2 0.047 1.6E-06 40.7 0.4 16 145-160 52-67 (254)
297 1rj9_A FTSY, signal recognitio 90.9 0.061 2.1E-06 41.8 0.8 19 142-160 102-120 (304)
298 1lw7_A Transcriptional regulat 90.8 0.046 1.6E-06 43.3 0.1 19 142-160 170-188 (365)
299 3sfz_A APAF-1, apoptotic pepti 90.8 0.11 3.8E-06 46.7 2.5 40 120-160 126-165 (1249)
300 1sxj_C Activator 1 40 kDa subu 90.5 0.14 4.8E-06 39.8 2.6 37 121-160 28-64 (340)
301 1j8m_F SRP54, signal recogniti 90.2 0.095 3.3E-06 40.6 1.4 18 142-159 98-115 (297)
302 3b9p_A CG5977-PA, isoform A; A 90.2 0.085 2.9E-06 40.1 1.1 40 121-160 24-72 (297)
303 2qby_A CDC6 homolog 1, cell di 90.2 0.08 2.7E-06 41.2 1.0 40 121-160 23-63 (386)
304 1iy2_A ATP-dependent metallopr 90.1 0.067 2.3E-06 40.5 0.4 16 145-160 76-91 (278)
305 2xxa_A Signal recognition part 90.1 0.21 7.2E-06 40.8 3.4 19 141-159 99-117 (433)
306 2ff7_A Alpha-hemolysin translo 90.0 0.063 2.1E-06 40.4 0.2 18 143-160 36-53 (247)
307 2olj_A Amino acid ABC transpor 89.9 0.061 2.1E-06 41.0 0.1 19 142-160 50-68 (263)
308 3eie_A Vacuolar protein sortin 89.9 0.16 5.6E-06 39.3 2.5 40 121-160 21-69 (322)
309 2v1u_A Cell division control p 89.8 0.11 3.6E-06 40.6 1.4 40 121-160 22-62 (387)
310 2ghi_A Transport protein; mult 89.7 0.069 2.4E-06 40.5 0.2 19 142-160 46-64 (260)
311 1sgw_A Putative ABC transporte 89.6 0.066 2.3E-06 39.5 0.1 17 144-160 37-53 (214)
312 3zvl_A Bifunctional polynucleo 89.6 0.073 2.5E-06 43.1 0.3 19 142-160 258-276 (416)
313 4g1u_C Hemin import ATP-bindin 89.6 0.067 2.3E-06 40.8 0.0 18 143-160 38-55 (266)
314 2x8a_A Nuclear valosin-contain 89.5 0.073 2.5E-06 40.6 0.2 16 145-160 47-62 (274)
315 4f4c_A Multidrug resistance pr 89.5 0.12 4.2E-06 47.8 1.7 20 141-160 1104-1123(1321)
316 2zu0_C Probable ATP-dependent 89.3 0.08 2.7E-06 40.3 0.3 19 142-160 46-64 (267)
317 1vpl_A ABC transporter, ATP-bi 89.3 0.072 2.5E-06 40.4 0.1 18 143-160 42-59 (256)
318 1ofh_A ATP-dependent HSL prote 89.2 0.075 2.6E-06 40.3 0.1 18 143-160 51-68 (310)
319 3kl4_A SRP54, signal recogniti 89.1 0.095 3.2E-06 42.9 0.6 19 141-159 96-114 (433)
320 3nh6_A ATP-binding cassette SU 89.0 0.057 2E-06 42.1 -0.7 19 142-160 80-98 (306)
321 1sxj_D Activator 1 41 kDa subu 89.0 0.092 3.1E-06 40.6 0.4 16 145-160 61-76 (353)
322 2ihy_A ABC transporter, ATP-bi 89.0 0.087 3E-06 40.4 0.3 18 143-160 48-65 (279)
323 1in4_A RUVB, holliday junction 88.9 0.087 3E-06 41.2 0.3 17 144-160 53-69 (334)
324 2ixe_A Antigen peptide transpo 88.9 0.1 3.4E-06 39.9 0.6 19 142-160 45-63 (271)
325 2r6a_A DNAB helicase, replicat 88.9 0.092 3.2E-06 42.9 0.4 18 143-160 204-221 (454)
326 3pfi_A Holliday junction ATP-d 88.8 0.11 3.6E-06 40.3 0.7 40 121-160 32-73 (338)
327 1iqp_A RFCS; clamp loader, ext 88.8 0.18 6E-06 38.4 1.9 37 121-160 28-64 (327)
328 3hws_A ATP-dependent CLP prote 88.7 0.2 6.9E-06 39.4 2.3 19 142-160 51-69 (363)
329 3nbx_X ATPase RAVA; AAA+ ATPas 88.7 0.18 6.1E-06 42.0 2.0 35 121-160 25-59 (500)
330 1hqc_A RUVB; extended AAA-ATPa 88.6 0.19 6.6E-06 38.4 2.1 18 143-160 39-56 (324)
331 1svm_A Large T antigen; AAA+ f 88.6 0.12 4.1E-06 41.5 0.9 20 141-160 168-187 (377)
332 3te6_A Regulatory protein SIR3 88.6 0.15 5.1E-06 40.0 1.4 35 123-160 29-63 (318)
333 3tui_C Methionine import ATP-b 88.5 0.089 3E-06 42.2 0.1 19 142-160 54-72 (366)
334 2axn_A 6-phosphofructo-2-kinas 88.4 0.14 4.7E-06 42.8 1.2 19 142-160 35-53 (520)
335 3bh0_A DNAB-like replicative h 88.4 0.083 2.9E-06 41.1 -0.2 34 121-160 53-86 (315)
336 2obl_A ESCN; ATPase, hydrolase 88.2 0.13 4.4E-06 40.8 0.8 19 142-160 71-89 (347)
337 4a1f_A DNAB helicase, replicat 88.1 0.091 3.1E-06 41.6 -0.1 34 121-160 31-64 (338)
338 3pxi_A Negative regulator of g 88.1 0.25 8.5E-06 42.9 2.7 38 120-160 182-219 (758)
339 2qgz_A Helicase loader, putati 88.1 0.29 1E-05 37.9 2.8 36 124-159 134-169 (308)
340 1sxj_B Activator 1 37 kDa subu 88.0 0.21 7.3E-06 37.9 1.9 36 122-160 25-60 (323)
341 3end_A Light-independent proto 87.9 0.14 5E-06 39.1 1.0 18 142-159 41-58 (307)
342 4fcw_A Chaperone protein CLPB; 87.9 0.4 1.4E-05 36.3 3.5 18 143-160 48-65 (311)
343 1u0j_A DNA replication protein 87.8 0.43 1.5E-05 36.5 3.5 39 121-160 84-122 (267)
344 1xwi_A SKD1 protein; VPS4B, AA 87.6 0.27 9.3E-06 38.2 2.4 40 121-160 15-63 (322)
345 2ewv_A Twitching motility prot 87.6 0.16 5.6E-06 40.4 1.1 19 142-160 136-154 (372)
346 3m6a_A ATP-dependent protease 87.5 0.27 9.3E-06 41.1 2.4 40 121-160 84-126 (543)
347 2bbs_A Cystic fibrosis transme 87.4 0.13 4.5E-06 39.7 0.4 19 142-160 64-82 (290)
348 2npi_A Protein CLP1; CLP1-PCF1 87.4 0.1 3.5E-06 42.9 -0.2 19 142-160 138-156 (460)
349 1w5s_A Origin recognition comp 87.3 0.26 8.9E-06 38.8 2.1 17 144-160 52-70 (412)
350 2r44_A Uncharacterized protein 87.1 0.14 4.7E-06 39.6 0.4 35 121-160 30-64 (331)
351 1knx_A Probable HPR(Ser) kinas 87.0 0.1 3.4E-06 40.9 -0.4 19 142-160 147-165 (312)
352 2chq_A Replication factor C sm 87.0 0.25 8.5E-06 37.5 1.8 37 121-160 20-56 (319)
353 4b4t_K 26S protease regulatory 87.0 0.25 8.6E-06 40.3 1.9 40 121-160 175-224 (428)
354 2qz4_A Paraplegin; AAA+, SPG7, 86.8 0.14 4.9E-06 37.8 0.3 18 143-160 40-57 (262)
355 3szr_A Interferon-induced GTP- 86.8 0.1 3.4E-06 44.4 -0.6 17 144-160 47-63 (608)
356 3uk6_A RUVB-like 2; hexameric 86.7 0.36 1.2E-05 37.6 2.6 18 143-160 71-88 (368)
357 2q6t_A DNAB replication FORK h 86.6 0.12 4.3E-06 42.0 -0.1 18 143-160 201-218 (444)
358 3bgw_A DNAB-like replicative h 86.6 0.13 4.3E-06 42.2 -0.1 18 143-160 198-215 (444)
359 1vt4_I APAF-1 related killer D 86.3 0.28 9.4E-06 44.9 1.9 38 121-160 131-168 (1221)
360 1jr3_A DNA polymerase III subu 86.3 0.34 1.2E-05 37.6 2.3 38 121-160 19-56 (373)
361 3d8b_A Fidgetin-like protein 1 86.2 0.21 7.3E-06 39.3 1.1 40 121-160 87-135 (357)
362 1qvr_A CLPB protein; coiled co 86.1 0.24 8.4E-06 43.6 1.5 37 121-160 173-209 (854)
363 2c9o_A RUVB-like 1; hexameric 86.0 0.38 1.3E-05 39.2 2.5 40 121-160 40-81 (456)
364 1r6b_X CLPA protein; AAA+, N-t 86.0 0.36 1.2E-05 41.8 2.5 37 121-160 189-225 (758)
365 2pt7_A CAG-ALFA; ATPase, prote 86.0 0.18 6.1E-06 39.6 0.5 17 144-160 173-189 (330)
366 1m8p_A Sulfate adenylyltransfe 85.7 0.22 7.6E-06 42.1 1.0 19 142-160 396-414 (573)
367 3cr8_A Sulfate adenylyltranfer 85.5 0.16 5.4E-06 42.8 -0.0 20 141-160 368-387 (552)
368 3k1j_A LON protease, ATP-depen 85.5 0.32 1.1E-05 41.2 1.8 35 121-160 44-78 (604)
369 2yl4_A ATP-binding cassette SU 85.4 0.25 8.6E-06 41.7 1.2 20 141-160 369-388 (595)
370 1x6v_B Bifunctional 3'-phospho 85.3 0.24 8.1E-06 42.5 1.0 20 141-160 51-70 (630)
371 1ls1_A Signal recognition part 85.2 0.25 8.7E-06 38.0 1.0 19 141-159 97-115 (295)
372 2gks_A Bifunctional SAT/APS ki 85.0 0.38 1.3E-05 40.4 2.0 19 142-160 372-390 (546)
373 2gza_A Type IV secretion syste 85.0 0.21 7.2E-06 39.6 0.5 18 143-160 176-193 (361)
374 1l8q_A Chromosomal replication 84.9 0.2 6.9E-06 38.6 0.3 18 143-160 38-55 (324)
375 3kl4_A SRP54, signal recogniti 84.9 2.6 8.9E-05 34.4 6.9 43 24-69 211-253 (433)
376 3jvv_A Twitching mobility prot 84.7 0.21 7.1E-06 39.7 0.3 18 143-160 124-141 (356)
377 2dpy_A FLII, flagellum-specifi 84.6 0.26 8.8E-06 40.3 0.8 19 142-160 157-175 (438)
378 4a82_A Cystic fibrosis transme 84.5 0.28 9.7E-06 41.3 1.1 19 142-160 367-385 (578)
379 3b60_A Lipid A export ATP-bind 84.5 0.29 9.9E-06 41.2 1.1 19 142-160 369-387 (582)
380 3vfd_A Spastin; ATPase, microt 84.4 0.3 1E-05 38.8 1.2 40 121-160 118-166 (389)
381 4b4t_M 26S protease regulatory 84.3 0.39 1.3E-05 39.3 1.8 42 119-160 182-233 (434)
382 3a8t_A Adenylate isopentenyltr 84.3 0.3 1E-05 38.7 1.1 18 143-160 41-58 (339)
383 1g8f_A Sulfate adenylyltransfe 84.2 0.35 1.2E-05 40.4 1.5 20 141-160 394-413 (511)
384 2qp9_X Vacuolar protein sortin 84.1 0.37 1.3E-05 37.9 1.5 18 143-160 85-102 (355)
385 3qf4_B Uncharacterized ABC tra 84.1 0.35 1.2E-05 40.9 1.5 20 141-160 380-399 (598)
386 1pzn_A RAD51, DNA repair and r 83.9 0.22 7.7E-06 39.3 0.2 20 141-160 130-149 (349)
387 1tf7_A KAIC; homohexamer, hexa 83.8 0.23 7.7E-06 41.3 0.2 18 143-160 40-57 (525)
388 3b5x_A Lipid A export ATP-bind 83.5 0.27 9.3E-06 41.4 0.5 19 142-160 369-387 (582)
389 1z47_A CYSA, putative ABC-tran 83.4 0.22 7.6E-06 39.6 -0.0 18 143-160 42-59 (355)
390 3lda_A DNA repair protein RAD5 83.4 0.24 8.2E-06 40.0 0.2 19 142-160 178-196 (400)
391 3pvs_A Replication-associated 83.3 0.4 1.4E-05 39.2 1.4 37 121-160 29-68 (447)
392 1um8_A ATP-dependent CLP prote 83.1 0.28 9.5E-06 38.7 0.4 18 143-160 73-90 (376)
393 2ce7_A Cell division protein F 83.1 0.67 2.3E-05 38.3 2.7 18 143-160 50-67 (476)
394 2zan_A Vacuolar protein sortin 82.9 0.58 2E-05 38.0 2.3 40 121-160 137-185 (444)
395 4b4t_L 26S protease subunit RP 82.9 0.51 1.8E-05 38.6 1.9 40 121-160 184-233 (437)
396 1yqt_A RNAse L inhibitor; ATP- 82.5 0.29 9.8E-06 41.0 0.3 19 142-160 47-65 (538)
397 3hr8_A Protein RECA; alpha and 82.5 0.27 9.4E-06 39.1 0.2 36 121-160 44-79 (356)
398 1g8p_A Magnesium-chelatase 38 82.3 0.31 1.1E-05 37.5 0.5 17 144-160 47-63 (350)
399 1v43_A Sugar-binding transport 82.3 0.27 9.2E-06 39.4 0.1 18 143-160 38-55 (372)
400 4b4t_I 26S protease regulatory 82.1 0.53 1.8E-05 38.5 1.7 40 121-160 185-234 (437)
401 1sxj_A Activator 1 95 kDa subu 81.9 0.75 2.6E-05 38.1 2.6 18 143-160 78-95 (516)
402 2r62_A Cell division protease 81.6 0.14 4.9E-06 38.2 -1.7 17 144-160 46-62 (268)
403 1p9r_A General secretion pathw 81.6 0.7 2.4E-05 37.5 2.3 18 143-160 168-185 (418)
404 3qf4_A ABC transporter, ATP-bi 81.5 0.4 1.4E-05 40.5 0.9 19 142-160 369-387 (587)
405 2zr9_A Protein RECA, recombina 81.4 0.32 1.1E-05 38.5 0.2 36 121-160 44-79 (349)
406 4b4t_J 26S protease regulatory 81.2 0.48 1.6E-05 38.4 1.2 41 120-160 150-200 (405)
407 3gd7_A Fusion complex of cysti 81.2 0.32 1.1E-05 39.1 0.2 19 142-160 47-65 (390)
408 4b4t_H 26S protease regulatory 80.9 0.51 1.7E-05 39.0 1.2 42 119-160 210-261 (467)
409 1sky_E F1-ATPase, F1-ATP synth 80.4 0.45 1.6E-05 39.3 0.8 18 143-160 152-169 (473)
410 3ux8_A Excinuclease ABC, A sub 80.3 0.46 1.6E-05 40.7 0.8 18 143-160 349-366 (670)
411 2vhj_A Ntpase P4, P4; non- hyd 79.8 0.36 1.2E-05 38.1 -0.0 17 144-160 125-141 (331)
412 4ido_A Atlastin-1; GTPase, GTP 79.5 0.42 1.4E-05 39.3 0.3 19 142-160 67-85 (457)
413 3hu3_A Transitional endoplasmi 79.4 0.76 2.6E-05 38.0 1.8 40 121-160 207-256 (489)
414 3bk7_A ABC transporter ATP-bin 79.3 0.43 1.5E-05 40.6 0.3 20 141-160 116-135 (607)
415 2oap_1 GSPE-2, type II secreti 79.1 0.48 1.6E-05 39.5 0.5 17 144-160 262-278 (511)
416 4f4c_A Multidrug resistance pr 79.1 0.58 2E-05 43.4 1.1 20 141-160 443-462 (1321)
417 2dhr_A FTSH; AAA+ protein, hex 78.8 0.46 1.6E-05 39.5 0.3 17 144-160 66-82 (499)
418 1tf7_A KAIC; homohexamer, hexa 78.4 0.47 1.6E-05 39.4 0.3 19 142-160 281-299 (525)
419 3ec1_A YQEH GTPase; atnos1, at 78.4 0.034 1.2E-06 44.4 -6.4 46 23-69 244-289 (369)
420 2z43_A DNA repair and recombin 78.2 0.46 1.6E-05 36.9 0.2 18 143-160 108-125 (324)
421 1g41_A Heat shock protein HSLU 78.0 0.52 1.8E-05 38.6 0.4 18 143-160 51-68 (444)
422 2z4s_A Chromosomal replication 78.0 0.5 1.7E-05 38.4 0.3 18 143-160 131-148 (440)
423 3u61_B DNA polymerase accessor 77.9 0.95 3.2E-05 34.6 1.9 38 121-160 29-66 (324)
424 2vf7_A UVRA2, excinuclease ABC 77.9 0.64 2.2E-05 41.2 1.0 20 141-160 522-541 (842)
425 3j16_B RLI1P; ribosome recycli 77.9 0.46 1.6E-05 40.5 0.1 19 142-160 103-121 (608)
426 3f9v_A Minichromosome maintena 77.9 0.53 1.8E-05 39.9 0.5 18 143-160 328-345 (595)
427 3h2y_A GTPase family protein; 77.8 0.049 1.7E-06 43.4 -5.6 47 22-69 242-288 (368)
428 2ffh_A Protein (FFH); SRP54, s 77.6 0.7 2.4E-05 37.6 1.1 18 142-159 98-115 (425)
429 4ag6_A VIRB4 ATPase, type IV s 77.3 0.56 1.9E-05 37.2 0.4 18 143-160 36-53 (392)
430 2i1q_A DNA repair and recombin 77.0 0.52 1.8E-05 36.3 0.2 35 121-160 82-116 (322)
431 1yqt_A RNAse L inhibitor; ATP- 76.7 0.65 2.2E-05 38.8 0.7 19 142-160 312-330 (538)
432 3ozx_A RNAse L inhibitor; ATP 76.6 0.65 2.2E-05 38.9 0.7 18 143-160 295-312 (538)
433 1v5w_A DMC1, meiotic recombina 76.1 0.54 1.9E-05 36.9 0.0 35 121-160 106-140 (343)
434 3szr_A Interferon-induced GTP- 76.0 5.9 0.0002 33.5 6.4 55 14-69 173-229 (608)
435 3g5u_A MCG1178, multidrug resi 76.0 0.76 2.6E-05 42.5 0.9 20 141-160 415-434 (1284)
436 1j8m_F SRP54, signal recogniti 75.8 10 0.00036 28.9 7.3 45 21-69 209-254 (297)
437 3ux8_A Excinuclease ABC, A sub 75.5 0.76 2.6E-05 39.3 0.8 17 143-159 45-61 (670)
438 1u94_A RECA protein, recombina 75.4 0.57 2E-05 37.2 -0.0 36 121-160 46-81 (356)
439 3bk7_A ABC transporter ATP-bin 75.3 0.74 2.5E-05 39.2 0.7 18 143-160 383-400 (607)
440 3ice_A Transcription terminati 75.3 0.8 2.8E-05 37.2 0.8 19 141-159 173-191 (422)
441 3pxi_A Negative regulator of g 75.0 1.8 6.2E-05 37.5 3.0 17 144-160 523-539 (758)
442 4dzz_A Plasmid partitioning pr 75.0 5.4 0.00019 27.8 5.2 48 19-67 92-143 (206)
443 3g5u_A MCG1178, multidrug resi 74.4 0.76 2.6E-05 42.4 0.5 18 143-160 1060-1077(1284)
444 1ypw_A Transitional endoplasmi 74.1 1 3.5E-05 39.5 1.2 21 140-160 236-256 (806)
445 2iw3_A Elongation factor 3A; a 74.0 0.71 2.4E-05 41.6 0.2 18 143-160 462-479 (986)
446 4aby_A DNA repair protein RECN 73.6 0.51 1.8E-05 37.5 -0.7 18 141-159 60-77 (415)
447 2ygr_A Uvrabc system protein A 72.7 0.9 3.1E-05 40.9 0.6 20 141-160 667-686 (993)
448 1azs_C GS-alpha; complex (lyas 72.1 1.2 4.1E-05 36.0 1.1 21 140-160 38-58 (402)
449 1q57_A DNA primase/helicase; d 72.1 0.53 1.8E-05 38.8 -1.0 18 143-160 243-260 (503)
450 3j16_B RLI1P; ribosome recycli 71.8 0.99 3.4E-05 38.4 0.6 17 144-160 380-396 (608)
451 2iw3_A Elongation factor 3A; a 71.4 0.5 1.7E-05 42.5 -1.4 19 142-160 699-717 (986)
452 3bfv_A CAPA1, CAPB2, membrane 70.1 5.3 0.00018 30.0 4.3 20 14-35 181-200 (271)
453 3upu_A ATP-dependent DNA helic 69.9 1.1 3.7E-05 36.5 0.4 17 144-160 47-63 (459)
454 3e1s_A Exodeoxyribonuclease V, 69.5 1.1 3.8E-05 37.8 0.4 17 144-160 206-222 (574)
455 1ypw_A Transitional endoplasmi 69.4 0.48 1.6E-05 41.6 -1.9 40 121-160 480-529 (806)
456 2r6f_A Excinuclease ABC subuni 69.4 0.87 3E-05 40.9 -0.3 19 142-160 650-668 (972)
457 3pih_A Uvrabc system protein A 68.4 1.2 4E-05 39.9 0.3 18 142-159 610-627 (916)
458 2q5c_A NTRC family transcripti 68.3 12 0.00042 26.7 5.8 29 122-155 79-107 (196)
459 2f62_A Nucleoside 2-deoxyribos 68.2 6.6 0.00022 27.5 4.2 45 19-64 62-108 (161)
460 1r6b_X CLPA protein; AAA+, N-t 67.7 3 0.0001 35.9 2.8 18 143-160 489-506 (758)
461 1xp8_A RECA protein, recombina 67.7 1.2 4E-05 35.5 0.2 36 121-160 57-92 (366)
462 2l82_A Designed protein OR32; 67.2 13 0.00046 24.4 5.2 56 2-65 56-114 (162)
463 2vf7_A UVRA2, excinuclease ABC 66.9 1.3 4.4E-05 39.3 0.3 17 144-160 38-54 (842)
464 1e9r_A Conjugal transfer prote 66.9 1.5 5E-05 35.2 0.6 18 142-159 53-70 (437)
465 3vkw_A Replicase large subunit 66.9 1.5 5E-05 36.0 0.6 37 124-160 141-179 (446)
466 3fkq_A NTRC-like two-domain pr 66.7 5.1 0.00017 31.5 3.7 39 121-159 113-161 (373)
467 1qvr_A CLPB protein; coiled co 66.3 3.8 0.00013 36.0 3.2 18 143-160 589-606 (854)
468 2ius_A DNA translocase FTSK; n 65.9 1.3 4.4E-05 37.0 0.1 18 143-160 168-185 (512)
469 1s2d_A Purine trans deoxyribos 65.5 8.1 0.00028 27.1 4.2 41 19-61 76-116 (167)
470 3l0o_A Transcription terminati 65.1 1.9 6.7E-05 35.0 1.0 19 141-159 174-192 (427)
471 3ehd_A Uncharacterized conserv 64.3 6.6 0.00022 27.5 3.5 44 19-64 64-107 (162)
472 1f8y_A Nucleoside 2-deoxyribos 61.8 6.2 0.00021 27.4 3.0 44 19-64 73-116 (157)
473 2ck3_D ATP synthase subunit be 61.7 2.5 8.5E-05 35.0 1.0 18 142-159 153-170 (482)
474 3cf2_A TER ATPase, transitiona 61.7 2 7E-05 37.8 0.6 20 141-160 237-256 (806)
475 3cwq_A Para family chromosome 61.1 4.3 0.00015 29.0 2.2 50 19-68 85-134 (209)
476 2ygr_A Uvrabc system protein A 60.7 2.1 7.3E-05 38.5 0.5 16 144-159 48-63 (993)
477 2r6f_A Excinuclease ABC subuni 60.4 2.2 7.5E-05 38.4 0.5 16 144-159 46-61 (972)
478 2ph1_A Nucleotide-binding prot 60.0 9.3 0.00032 28.1 3.9 12 54-65 181-193 (262)
479 3cio_A ETK, tyrosine-protein k 59.0 14 0.00048 28.1 4.9 21 13-35 202-222 (299)
480 3llm_A ATP-dependent RNA helic 58.7 2.7 9.1E-05 30.6 0.7 17 143-159 77-93 (235)
481 1ny5_A Transcriptional regulat 58.1 4.3 0.00015 32.2 1.9 32 123-159 146-177 (387)
482 3cio_A ETK, tyrosine-protein k 55.7 8.9 0.0003 29.2 3.2 17 143-159 105-122 (299)
483 1w36_D RECD, exodeoxyribonucle 55.5 2.9 9.8E-05 35.4 0.4 16 144-159 166-181 (608)
484 1ni3_A YCHF GTPase, YCHF GTP-b 55.1 18 0.0006 29.0 5.0 76 54-135 224-306 (392)
485 2r9v_A ATP synthase subunit al 55.1 2.9 9.9E-05 34.9 0.4 19 141-159 174-192 (515)
486 1fx0_B ATP synthase beta chain 54.7 3 0.0001 34.6 0.4 19 141-159 164-182 (498)
487 2pju_A Propionate catabolism o 54.2 18 0.00061 26.6 4.5 29 122-155 91-119 (225)
488 1ewq_A DNA mismatch repair pro 53.8 2.7 9.2E-05 36.8 -0.0 17 144-160 578-594 (765)
489 2khz_A C-MYC-responsive protei 53.6 15 0.00052 25.5 3.9 43 19-65 72-114 (165)
490 1wb9_A DNA mismatch repair pro 51.9 3.1 0.00011 36.6 0.1 18 143-160 608-625 (800)
491 3k9g_A PF-32 protein; ssgcid, 51.7 15 0.00052 26.9 3.9 47 19-65 161-208 (267)
492 1q8k_A Eukaryotic translation 51.6 30 0.001 26.7 5.7 34 119-152 198-231 (308)
493 2iut_A DNA translocase FTSK; n 50.2 3.5 0.00012 34.9 0.1 18 143-160 215-232 (574)
494 2gk6_A Regulator of nonsense t 49.9 4 0.00014 34.6 0.4 16 144-159 197-212 (624)
495 2qe7_A ATP synthase subunit al 49.7 2.9 0.0001 34.8 -0.4 19 141-159 161-179 (502)
496 4b3f_X DNA-binding protein smu 48.5 4.3 0.00015 34.4 0.4 16 145-160 208-223 (646)
497 3ez2_A Plasmid partition prote 48.3 5.6 0.00019 31.4 1.0 18 142-159 108-126 (398)
498 3ea0_A ATPase, para family; al 47.9 14 0.00049 26.4 3.2 49 20-68 136-186 (245)
499 2ck3_A ATP synthase subunit al 47.8 3.2 0.00011 34.6 -0.5 19 141-159 161-179 (510)
500 3q9l_A Septum site-determining 47.1 9.8 0.00033 27.6 2.1 46 19-65 130-184 (260)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.92 E-value=6.1e-25 Score=172.13 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=101.6
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.|+.. .++++ ++.+++||+|++|+|+++|.++.++.+.+++ .++|.++|+||+||++. +..+.|.+
T Consensus 7 PGhm~k-a~~~~-~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---~~kp~ilVlNK~DL~~~--------~~~~~~~~ 73 (282)
T 1puj_A 7 PGHMAK-ARREV-TEKLKLIDIVYELVDARIPMSSRNPMIEDIL---KNKPRIMLLNKADKADA--------AVTQQWKE 73 (282)
T ss_dssp --CTTH-HHHHH-HHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---SSSCEEEEEECGGGSCH--------HHHHHHHH
T ss_pred chHHHH-HHHHH-HHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---CCCCEEEEEECcccCCH--------HHHHHHHH
Confidence 889885 58888 7999999999999999999998888888876 46999999999999986 55678888
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc-------CC-CCCceEEEEEeecCCCccc
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN-------KD-IKTSITVGVVGECNIAGSI 157 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~-------~~-~~~~~~v~vvG~pNVGKSs 157 (161)
++.. .+.+++++||.++ .|+++|.+.+.+.++. .+ ...++++++||.|||||||
T Consensus 74 ~~~~-~g~~~i~iSA~~~-----------------~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSs 135 (282)
T 1puj_A 74 HFEN-QGIRSLSINSVNG-----------------QGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKST 135 (282)
T ss_dssp HHHT-TTCCEEECCTTTC-----------------TTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHH
T ss_pred HHHh-cCCcEEEEECCCc-----------------ccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHH
Confidence 8752 3568899999988 8899988888776642 11 2356899999999999999
Q ss_pred ccC
Q psy8220 158 RDL 160 (161)
Q Consensus 158 l~~ 160 (161)
|++
T Consensus 136 liN 138 (282)
T 1puj_A 136 LIN 138 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.86 E-value=6.3e-23 Score=159.13 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=90.2
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.|+.. .++++ ++.++++|+|++|+|+++|..+.++.+. ++ ++|.++|+||+||++. +..+.|.+
T Consensus 5 PGhm~k-a~~~~-~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll----~k~~iivlNK~DL~~~--------~~~~~~~~ 69 (262)
T 3cnl_A 5 PGHIEK-AKRQI-KDLLRLVNTVVEVRDARAPFATSAYGVD-FS----RKETIILLNKVDIADE--------KTTKKWVE 69 (262)
T ss_dssp ----CC-TTHHH-HHHHTTCSEEEEEEETTSTTTTSCTTSC-CT----TSEEEEEEECGGGSCH--------HHHHHHHH
T ss_pred chHHHH-HHHHH-HHHHhhCCEEEEEeeCCCCCcCcChHHH-hc----CCCcEEEEECccCCCH--------HHHHHHHH
Confidence 788875 47888 7999999999999999999988766555 43 5999999999999986 55678888
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
++.. .+.++ ++||.++ .|+++|.+.|.+.+ .++++||.||||||||++
T Consensus 70 ~~~~-~g~~v-~iSa~~~-----------------~gi~~L~~~l~~~~--------~~v~~vG~~~vGKSslin 117 (262)
T 3cnl_A 70 FFKK-QGKRV-ITTHKGE-----------------PRKVLLKKLSFDRL--------ARVLIVGVPNTGKSTIIN 117 (262)
T ss_dssp HHHH-TTCCE-EECCTTS-----------------CHHHHHHHHCCCTT--------CEEEEEESTTSSHHHHHH
T ss_pred HHHH-cCCeE-EEECCCC-----------------cCHHHHHHHHHHhh--------hheEEeCCCCCCHHHHHH
Confidence 7752 36677 9999998 89999888875543 589999999999999974
No 3
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=1.7e-19 Score=148.63 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
+.+++.+..++++||++|+|+|++++.+..+..+.+++.. .++|+++|+||+|+.+. . ....+.+. .
T Consensus 70 ~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-~~~pvilv~NK~D~~~~--------~--~~~~~~~~--l 136 (436)
T 2hjg_A 70 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-TKKPVVLAVNKLDNTEM--------R--ANIYDFYS--L 136 (436)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-CCSCEEEEEECCCC---------------CCCSSGG--G
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCCCEEEEEECccCccc--------h--hhHHHHHH--c
Confidence 4566666889999999999999999888777788887776 68999999999998754 1 11112222 1
Q ss_pred CC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC----CCCceEEEEEeecCCCcccccC
Q psy8220 92 IY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD----IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 92 ~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~----~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+. +++++||+++ .|+++|++.|.+.++... ....++|++||.||||||||+.
T Consensus 137 g~~~~~~iSA~~g-----------------~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin 193 (436)
T 2hjg_A 137 GFGEPYPISGTHG-----------------LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVN 193 (436)
T ss_dssp SSCCCEECBTTTT-----------------BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEeCcCC-----------------CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHH
Confidence 22 6789999999 999999999998876432 1245899999999999999974
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=1.3e-19 Score=149.40 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
+.++..+..++++||++|+|+|++.+.+..+..+.+++.. .++|+++|+||+|+... .....+.++.. .
T Consensus 69 ~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-~~~p~ilv~NK~D~~~~--------~~~~~~~~~~~--l 137 (439)
T 1mky_A 69 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-STVDTILVANKAENLRE--------FEREVKPELYS--L 137 (439)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-HTCCEEEEEESCCSHHH--------HHHHTHHHHGG--G
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEEEEEeCCCCccc--------cHHHHHHHHHh--c
Confidence 4466666889999999999999999887777778777765 57999999999998532 01111112222 2
Q ss_pred CC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC--------CCCceEEEEEeecCCCcccccC
Q psy8220 92 IY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD--------IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 92 ~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~--------~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+. +++++||+++ .|+++|++.|.+.++... ....++|++||.||||||||+.
T Consensus 138 g~~~~~~iSA~~g-----------------~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln 198 (439)
T 1mky_A 138 GFGEPIPVSAEHN-----------------INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFN 198 (439)
T ss_dssp SSCSCEECBTTTT-----------------BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEeccCC-----------------CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHH
Confidence 33 5789999999 999999999988776322 1245899999999999999974
No 5
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.78 E-value=2.6e-19 Score=144.86 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.++.+..+....+|++++|+|++++..+..+.+.+++ .++|+++|+||+|+.+... . .+.+..|...+....+
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l---~~~piilV~NK~DLl~~~~---~-~~~~~~~l~~~~~~~g 132 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA---ADNPILLVGNKADLLPRSV---K-YPKLLRWMRRMAEELG 132 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC---TTSCEEEEEECGGGSCTTC---C-HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh---CCCCEEEEEEChhcCCCcc---C-HHHHHHHHHHHHHHcC
Confidence 3445535555889999999999999887777777765 3699999999999987510 0 1234556543211123
Q ss_pred C---ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 93 Y---SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 93 ~---~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
. +++.+||+++ .|+++|.+.|.++... .+++++|.||||||||++
T Consensus 133 ~~~~~v~~iSA~~g-----------------~gi~~L~~~I~~~~~~------~~i~~vG~~nvGKStliN 180 (369)
T 3ec1_A 133 LCPVDVCLVSAAKG-----------------IGMAKVMEAINRYREG------GDVYVVGCTNVGKSTFIN 180 (369)
T ss_dssp CCCSEEEECBTTTT-----------------BTHHHHHHHHHHHHTT------SCEEEECCTTSSHHHHHH
T ss_pred CCcccEEEEECCCC-----------------CCHHHHHHHHHhhccc------CcEEEEcCCCCchHHHHH
Confidence 3 5789999999 9999999999887643 479999999999999975
No 6
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.78 E-value=1.9e-19 Score=145.65 Aligned_cols=119 Identities=20% Similarity=0.170 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
+.++.++.+....+|++|+|+|++++..+..+.+.+++ .++|+++|+||+||.+... . .+.+..|...+....
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~~---~-~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV---GNNKVLLVGNKADLIPKSV---K-HDKVKHWMRYSAKQL 129 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS---SSSCEEEEEECGGGSCTTS---C-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh---CCCcEEEEEEChhcCCccc---C-HHHHHHHHHHHHHHc
Confidence 44556645556677799999999987655556666654 3699999999999986510 0 123455644332112
Q ss_pred CC---ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 92 IY---SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 92 ~~---~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+. +++.+||+++ .|+++|.+.|.++.+. .+++++|.||||||||++
T Consensus 130 g~~~~~v~~iSA~~g-----------------~gi~~L~~~l~~~~~~------~~i~~vG~~nvGKStliN 178 (368)
T 3h2y_A 130 GLKPEDVFLISAAKG-----------------QGIAELADAIEYYRGG------KDVYVVGCTNVGKSTFIN 178 (368)
T ss_dssp TCCCSEEEECCTTTC-----------------TTHHHHHHHHHHHHTT------SCEEEEEBTTSSHHHHHH
T ss_pred CCCcccEEEEeCCCC-----------------cCHHHHHhhhhhhccc------ceEEEecCCCCChhHHHH
Confidence 44 6789999999 9999999999887643 479999999999999975
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=1.4e-17 Score=137.89 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 11 GVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 11 ~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+.+++.+..++.+||++|+|+|++.++...+..+.+++.. .++|+++|+||+|+.+. . ..+.+.+. .
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-~~~pvilV~NK~D~~~~--------~--~~~~e~~~-l 156 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-TKKPVVLAVNKLDNTEM--------R--ANIYDFYS-L 156 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-CCSCEEEEEECC-------------------CCSGG-G
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-cCCCEEEEEECccchhh--------h--hhHHHHHH-c
Confidence 45566666889999999999999999888888888888876 78999999999998754 1 11222222 1
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC----CCCceEEEEEeecCCCcccccC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD----IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~----~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
...+.+++||+++ .|+++|++.+.+.++... .....+|+++|.||||||||+.
T Consensus 157 g~~~~~~iSA~~g-----------------~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin 213 (456)
T 4dcu_A 157 GFGEPYPISGTHG-----------------LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVN 213 (456)
T ss_dssp SSSSEEECCTTTC-----------------TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHH
T ss_pred CCCceEEeecccc-----------------cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHH
Confidence 1234679999998 999999999988775432 1346899999999999999974
No 8
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.64 E-value=2.8e-16 Score=123.87 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=76.4
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHH---HhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDL---VVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~---l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
..+..+|++++|+|+++|..+.+ .+.++ +.. .+.|+++|+||+||.++. .. +....|...+.. .+++++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~-~~~~~ilV~NK~DL~~~~----~v-~~~~~~~~~~~~-~g~~~~ 146 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEY-FKVEPVIVFNKIDLLNEE----EK-KELERWISIYRD-AGYDVL 146 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHH-TTCEEEEEECCGGGCCHH----HH-HHHHHHHHHHHH-TTCEEE
T ss_pred HHHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHh-CCCCEEEEEEcccCCCcc----cc-HHHHHHHHHHHH-CCCeEE
Confidence 46789999999999998854433 23333 333 579999999999998751 00 013445444432 357899
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
++||+++ .|+++|.+.+. . -.++++|.+|||||||++
T Consensus 147 ~~SA~~g-----------------~gi~~L~~~l~----G------~i~~l~G~sG~GKSTLln 183 (302)
T 2yv5_A 147 KVSAKTG-----------------EGIDELVDYLE----G------FICILAGPSGVGKSSILS 183 (302)
T ss_dssp ECCTTTC-----------------TTHHHHHHHTT----T------CEEEEECSTTSSHHHHHH
T ss_pred EEECCCC-----------------CCHHHHHhhcc----C------cEEEEECCCCCCHHHHHH
Confidence 9999999 89999887642 1 368999999999999975
No 9
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.63 E-value=2.4e-17 Score=130.36 Aligned_cols=109 Identities=16% Similarity=0.074 Sum_probs=80.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
+..++.+|++++|+|++.|..+.+ .+.+++.. ..++|.++|+||+||.++. ...+.+..|.+.+.. .+++++
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~----~~~~~~~~~~~~y~~-~g~~v~ 154 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQ----DTEDTIQAYAEDYRN-IGYDVY 154 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCH----HHHHHHHHHHHHHHH-HTCCEE
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchh----hhHHHHHHHHHHHHh-CCCeEE
Confidence 357899999999999999887765 67777631 1579999999999999861 000014667776642 367899
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
++||.++ .|+++|++. .+ +-.++++|.||||||||++
T Consensus 155 ~~sa~~~-----------------~g~~~L~~~----~~------G~~~~lvG~sG~GKSTLln 191 (307)
T 1t9h_A 155 LTSSKDQ-----------------DSLADIIPH----FQ------DKTTVFAGQSGVGKSSLLN 191 (307)
T ss_dssp ECCHHHH-----------------TTCTTTGGG----GT------TSEEEEEESHHHHHHHHHH
T ss_pred EEecCCC-----------------CCHHHHHhh----cC------CCEEEEECCCCCCHHHHHH
Confidence 9999887 777666543 22 2479999999999999975
No 10
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.59 E-value=2.5e-15 Score=118.29 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=76.6
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
+...+..+|++|+|+|++++..+.+ ..+...+.. .+.|+++|+||+||.+.. .. +....|.+.+.. . .++
T Consensus 78 ~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~~~piilv~NK~DL~~~~----~v-~~~~~~~~~~~~-~-~~~ 149 (301)
T 1u0l_A 78 TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-NELETVMVINKMDLYDED----DL-RKVRELEEIYSG-L-YPI 149 (301)
T ss_dssp TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-TTCEEEEEECCGGGCCHH----HH-HHHHHHHHHHTT-T-SCE
T ss_pred eccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEeHHHcCCch----hH-HHHHHHHHHHhh-h-CcE
Confidence 3456889999999999998764322 122222333 579999999999998651 00 113455555431 1 678
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+.+||+++ .|+++|.+.+. . -.++++|.+|+|||||++
T Consensus 150 ~~~SAktg-----------------~gv~~lf~~l~----g------eiv~l~G~sG~GKSTll~ 187 (301)
T 1u0l_A 150 VKTSAKTG-----------------MGIEELKEYLK----G------KISTMAGLSGVGKSSLLN 187 (301)
T ss_dssp EECCTTTC-----------------TTHHHHHHHHS----S------SEEEEECSTTSSHHHHHH
T ss_pred EEEECCCC-----------------cCHHHHHHHhc----C------CeEEEECCCCCcHHHHHH
Confidence 99999999 89999887652 1 368999999999999974
No 11
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.58 E-value=2.1e-15 Score=121.39 Aligned_cols=107 Identities=20% Similarity=0.117 Sum_probs=78.0
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
+..++.+|.+++| |++.|..+. ..+.+++.. ..++|.++|+||+||.++. ..+.+..|...+.. .+++++
T Consensus 125 ~~i~anvD~v~iv-~a~~P~~~~-~~i~r~L~~a~~~~~~~iivlNK~DL~~~~-----~~~~~~~~~~~y~~-~G~~v~ 196 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAILPELSL-NIIDRYLVGCETLQVEPLIVLNKIDLLDDE-----GMDFVNEQMDIYRN-IGYRVL 196 (358)
T ss_dssp EEEEECCCEEEEE-EESTTTCCH-HHHHHHHHHHHHHTCEEEEEEECGGGCCHH-----HHHHHHHHHHHHHT-TTCCEE
T ss_pred HHHHhcCCEEEEE-EeCCCCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCch-----hHHHHHHHHHHHHh-CCCcEE
Confidence 3457899999965 777776543 356666531 0478899999999999761 00125567777652 478899
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
++||.++ .|++.|...+ +. -.++++|.||||||||+.
T Consensus 197 ~~Sa~~~-----------------~gl~~L~~~~----~G------~~~~lvG~sG~GKSTLln 233 (358)
T 2rcn_A 197 MVSSHTQ-----------------DGLKPLEEAL----TG------RISIFAGQSGVGKSSLLN 233 (358)
T ss_dssp ECBTTTT-----------------BTHHHHHHHH----TT------SEEEEECCTTSSHHHHHH
T ss_pred EEecCCC-----------------cCHHHHHHhc----CC------CEEEEECCCCccHHHHHH
Confidence 9999998 8998887653 21 369999999999999974
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.30 E-value=5.9e-12 Score=99.23 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHH-HHHHhCCCCCcEEEEeecCCCC-CcccccccHHHHHHHHhh
Q psy8220 8 EMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVA-EDLVVGTPGKKLVIVINKAGKP-STKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 8 ~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i-~~~l~~~~~k~~ilVlNK~Dl~-~~~~~~~~~~~~~~~~~~ 85 (161)
+.+++.+...+...+..+|++|+|+|++++.+..+..+ .+.+.. .+.|+++|+||+|+. +.. ...+....+.+
T Consensus 76 ~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~~~pvilV~NK~Dl~~~~~----~~~~~~~~l~~ 150 (308)
T 3iev_A 76 DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-LNKPVIVVINKIDKIGPAK----NVLPLIDEIHK 150 (308)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-GCCCEEEEEECGGGSSSGG----GGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-cCCCEEEEEECccCCCCHH----HHHHHHHHHHH
Confidence 56778888888899999999999999998877666665 666655 579999999999998 431 11122233333
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+. ...+++++||+++ .|+++|.+.|.+.++.
T Consensus 151 ~~~--~~~~i~~vSA~~g-----------------~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 151 KHP--ELTEIVPISALKG-----------------ANLDELVKTILKYLPE 182 (308)
T ss_dssp HCT--TCCCEEECBTTTT-----------------BSHHHHHHHHHHHSCB
T ss_pred hcc--CCCeEEEEeCCCC-----------------CCHHHHHHHHHHhCcc
Confidence 331 2367899999999 8999999988887754
No 13
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=3.9e-12 Score=92.19 Aligned_cols=111 Identities=12% Similarity=-0.127 Sum_probs=63.7
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
++...+..+|++|+|+|++++..... ..+...+... .+.|+++|+||+|+.+.. ... +....+... .+
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~---~~~-~~~~~~~~~----~~ 151 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE---VDR-NEGLKFARK----HS 151 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC---SCH-HHHHHHHHH----TT
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc---cCH-HHHHHHHHH----cC
Confidence 34567789999999999987643211 2233333321 368999999999995431 011 112222222 35
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCccc
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSI 157 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSs 157 (161)
.+++.+||+++ .|+++|.+.|.+.+....... --+.+|+||||
T Consensus 152 ~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~~~~~~~-----~~~~~n~gkSs 194 (195)
T 1x3s_A 152 MLFIEASAKTC-----------------DGVQCAFEELVEKIIQTPGLW-----ESENQNSGPSS 194 (195)
T ss_dssp CEEEECCTTTC-----------------TTHHHHHHHHHHHHHTSGGGT-----CC---------
T ss_pred CEEEEecCCCC-----------------CCHHHHHHHHHHHHHhhhhhh-----cccccCCCCCC
Confidence 67889999998 999999999988775432100 01556999998
No 14
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.27 E-value=1.2e-11 Score=97.21 Aligned_cols=103 Identities=15% Similarity=0.044 Sum_probs=75.5
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCC--CCcEEEEeecCCCCCcccccccHHHH-HH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTP--GKKLVIVINKAGKPSTKIQSGSMAQI-FQ 81 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~--~k~~ilVlNK~Dl~~~~~~~~~~~~~-~~ 81 (161)
+|.+.+++++...+..++..||++|+|+|++++.+..+..+.+.+.. . +.|+++|+||+|+.+. .. +.
T Consensus 67 ~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~-~~~~~p~ilV~NK~Dl~~~--------~~~~~ 137 (301)
T 1wf3_A 67 KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKP-LVGKVPILLVGNKLDAAKY--------PEEAM 137 (301)
T ss_dssp CCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGG-GTTTSCEEEEEECGGGCSS--------HHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHh-hcCCCCEEEEEECcccCCc--------hHHHH
Confidence 34556677777777899999999999999998877666666666665 3 7999999999999865 22 22
Q ss_pred HHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 82 TWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 82 ~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+...+. ...+++++||+++ .|+++|.+.|.+.++
T Consensus 138 ~~~~~~~--~~~~~~~iSA~~g-----------------~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 138 KAYHELL--PEAEPRMLSALDE-----------------RQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHTS--TTSEEEECCTTCH-----------------HHHHHHHHHHHTTCC
T ss_pred HHHHHhc--CcCcEEEEeCCCC-----------------CCHHHHHHHHHHhcc
Confidence 2222222 2446899999988 777777777776554
No 15
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.19 E-value=2.6e-10 Score=97.29 Aligned_cols=129 Identities=14% Similarity=0.087 Sum_probs=89.8
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
+|.|.. |..+. ...+..+|.+|+|+|++++...+.......... .+.|+++|+||+|+.+.. .......+.
T Consensus 78 TPGh~d--F~~ev-~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-~~ipiIvViNKiDl~~a~-----~~~v~~ei~ 148 (599)
T 3cb4_D 78 TPGHVD--FSYEV-SRSLAACEGALLVVDAGQGVEAQTLANCYTAME-MDLEVVPVLNKIDLPAAD-----PERVAEEIE 148 (599)
T ss_dssp CCCCGG--GHHHH-HHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-TTCEEEEEEECTTSTTCC-----HHHHHHHHH
T ss_pred CCCchH--HHHHH-HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEeeeccCccccc-----HHHHHHHHH
Confidence 356532 44444 678899999999999998876555444333333 579999999999997641 112234444
Q ss_pred hhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC--CCCceEEEEEee---cCCCccccc
Q psy8220 85 PYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD--IKTSITVGVVGE---CNIAGSIRD 159 (161)
Q Consensus 85 ~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~--~~~~~~v~vvG~---pNVGKSsl~ 159 (161)
+.+. ....+++++||+++ .|+++|++.|.+.++... ...+.+..|.+. |++|+.+++
T Consensus 149 ~~lg-~~~~~vi~vSAktg-----------------~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~ 210 (599)
T 3cb4_D 149 DIVG-IDATDAVRCSAKTG-----------------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLI 210 (599)
T ss_dssp HHTC-CCCTTCEEECTTTC-----------------TTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEE
T ss_pred HHhC-CCcceEEEeecccC-----------------CCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEE
Confidence 4443 11235899999999 999999999998886432 234677777777 999998875
Q ss_pred C
Q psy8220 160 L 160 (161)
Q Consensus 160 ~ 160 (161)
+
T Consensus 211 r 211 (599)
T 3cb4_D 211 R 211 (599)
T ss_dssp E
T ss_pred E
Confidence 3
No 16
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.16 E-value=1.3e-10 Score=86.24 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=66.7
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc------CCCCc
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI------QSIYS 94 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 94 (161)
....+|++++|+|++++....+..+.+.+.. .+.|+++|+||+|+.+.. ........+.+.+.. ....+
T Consensus 112 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~~p~i~v~nK~Dl~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~ 186 (223)
T 4dhe_A 112 TRPQLCGMILMMDARRPLTELDRRMIEWFAP-TGKPIHSLLTKCDKLTRQ----ESINALRATQKSLDAYRDAGYAGKLT 186 (223)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GCCCEEEEEECGGGSCHH----HHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred cCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cCCCEEEEEeccccCChh----hHHHHHHHHHHHHHhhhhcccCCCCe
Confidence 3444899999999998877666677777765 679999999999998751 000111222222221 13557
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
++++||+++ .|+++|.+.|.+.++..
T Consensus 187 ~~~~SA~~g-----------------~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 187 VQLFSALKR-----------------TGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEEBTTTT-----------------BSHHHHHHHHHHHHC--
T ss_pred EEEeecCCC-----------------cCHHHHHHHHHHhcCcc
Confidence 899999999 99999999999887653
No 17
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.15 E-value=3.7e-10 Score=81.50 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=68.4
Q ss_pred HHHHHHHHh---hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVV---EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i---~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+ ..+|++++|+|++.+....+..+.+++.. .+.|+++|+||+|+.+.. ......+.....+...
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~----~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-LNIPFTIVLTKMDKVKMS----ERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTCCEEEEEECGGGSCGG----GHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-cCCCEEEEEEChhcCChH----HHHHHHHHHHHHHhhc
Confidence 444433334 44599999999988766656666666665 579999999999998651 1111122222333311
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
...+++.+||+++ .|+++|.+.|.+.+++
T Consensus 166 ~~~~~~~~Sa~~~-----------------~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTG-----------------EGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTC-----------------TTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCC-----------------CCHHHHHHHHHHHhhc
Confidence 2457899999999 9999999999887653
No 18
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.15 E-value=4.2e-10 Score=81.54 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhc---cEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc
Q psy8220 12 VVVQEIERSVVEAA---DVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS 88 (161)
Q Consensus 12 ~~~~~~~~~~i~~a---DviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (161)
+.+..++...+..+ |++++|+|++++....+..+.+++.. .+.|+++|+||+|+.+.. ..........+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~----~~~~~~~~~~~~~~ 164 (195)
T 1svi_A 90 EAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YGIPVIVIATKADKIPKG----KWDKHAKVVRQTLN 164 (195)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTCCEEEEEECGGGSCGG----GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEEEEEECcccCChH----HHHHHHHHHHHHHc
Confidence 33444444555555 99999999998876655556666665 679999999999998751 11111223333333
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.....+++.+||+++ .|+++|.+.|.+.++
T Consensus 165 ~~~~~~~~~~Sa~~~-----------------~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 IDPEDELILFSSETK-----------------KGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTSEEEECCTTTC-----------------TTHHHHHHHHHHHHT
T ss_pred ccCCCceEEEEccCC-----------------CCHHHHHHHHHHHhc
Confidence 223567899999998 999999999987654
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.12 E-value=2.7e-11 Score=86.93 Aligned_cols=105 Identities=12% Similarity=-0.041 Sum_probs=64.9
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHH-hCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLV-VGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l-~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
...+..+|++++|+|++++..... ..+...+ ... .+.|+++|.||+|+.+.. .... +....+... .+.+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~~~~ 144 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER--VISY-EEGKALAES----WNAA 144 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTC--CSCH-HHHHHHHHH----TTCE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcc--eecH-HHHHHHHHH----hCCc
Confidence 456778999999999987532111 1111112 110 368999999999996531 1111 222333332 3567
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCccc
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSI 157 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSs 157 (161)
++.+||+++ .|++++.+.|.+.+.... |.+++||||
T Consensus 145 ~~~~Sa~~~-----------------~~v~~l~~~l~~~~~~~~----------~~~~~gkss 180 (181)
T 3t5g_A 145 FLESSAKEN-----------------QTAVDVFRRIILEAEKMD----------GACSQGKSS 180 (181)
T ss_dssp EEECCTTSH-----------------HHHHHHHHHHHHHHHTC---------------CCBSC
T ss_pred EEEEecCCC-----------------CCHHHHHHHHHHHHHHhc----------CCcccCcCC
Confidence 899999998 899999999988876543 788999998
No 20
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.10 E-value=3.5e-10 Score=93.45 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=77.9
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
...++.||++|+|+|++++....+..+..++.+ .++|+++|+||+|+.+.. .....+..+...+.+....+.|++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEEEEEECGGGSCCC--SSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cCCCEEEEEEChhcCCCc--hHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 468899999999999999888888888887776 689999999999998641 11111111111122221135689999
Q ss_pred eecCCCCcchhh---hhhhhccccccCHHHHHHHHHhHhh
Q psy8220 99 SSRSQKDAQTER---DLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 99 Sa~~~~~~~~~~---~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
||+++.+....+ ...+.....+.....|.+.+.+...
T Consensus 349 SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~ 388 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVA 388 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999986555443 3455556667777777777766553
No 21
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.08 E-value=6.1e-10 Score=90.62 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=78.9
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCC-CCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPM-GTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~-~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
|.|.. |.... ...+..+|++|+|+|++++. ..+..+....+.....+|+++|+||+|+.+.. ...+..+...
T Consensus 83 PGh~~--~~~~~-~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~----~~~~~~~~i~ 155 (403)
T 3sjy_A 83 PGHEV--LMATM-LSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE----EALSQYRQIK 155 (403)
T ss_dssp CCCGG--GHHHH-HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH----HHHHHHHHHH
T ss_pred CCcHH--HHHHH-HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH----HHHHHHHHHH
Confidence 55433 34444 67888999999999999875 33333333333321246999999999998751 0101112222
Q ss_pred hhhcc--CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC--CCCceEEEEEeecCCCc
Q psy8220 85 PYNSI--QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD--IKTSITVGVVGECNIAG 155 (161)
Q Consensus 85 ~~~~~--~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~--~~~~~~v~vvG~pNVGK 155 (161)
+.+.. ....+++++||+++ .|+++|++.|.+.++... ...+.+..|....+|.+
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g-----------------~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~ 213 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHK-----------------INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNK 213 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTT-----------------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCC
T ss_pred HHHHhhCCCCCEEEEEECCCC-----------------cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecC
Confidence 22221 12567999999999 999999999998765432 23456777766555544
No 22
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.07 E-value=5.4e-10 Score=78.25 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
+.+.+...+..+|++++|+|++++....+..+.+++.. .+.|+++|+||+|+.+.. +....+. . .+.
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~-------~~~~~~~---~--~~~ 135 (161)
T 2dyk_A 69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR-KGKPVILVATKVDDPKHE-------LYLGPLY---G--LGF 135 (161)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-HTCCEEEEEECCCSGGGG-------GGCGGGG---G--GSS
T ss_pred HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh-cCCCEEEEEECcccccch-------HhHHHHH---h--CCC
Confidence 45555678899999999999998766555566666654 579999999999997541 1111111 1 234
Q ss_pred -ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 94 -SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 94 -~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+++.+||+++ .|+++|.+.|.+.+
T Consensus 136 ~~~~~~Sa~~~-----------------~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 136 GDPIPTSSEHA-----------------RGLEELLEAIWERL 160 (161)
T ss_dssp CSCEECBTTTT-----------------BSHHHHHHHHHHHC
T ss_pred CCeEEEecccC-----------------CChHHHHHHHHHhC
Confidence 6899999998 99999999987654
No 23
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.05 E-value=1.2e-10 Score=91.48 Aligned_cols=95 Identities=8% Similarity=0.150 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
+.+.+..+++.+|++++|+|++. +...+..+.+.+.. .+.|+++|+||+|+.... ..+......+.+..++
T Consensus 78 ~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~~~-------~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 78 MNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQEK-------ADLLPHLQFLASQMNF 148 (301)
T ss_dssp HTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-SSSCEEEEEESTTTCCCH-------HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-cCCCEEEEEECcccCccH-------HHHHHHHHHHHHhcCc
Confidence 33434678899999999999987 66666777777765 579999999999998621 2223333333321233
Q ss_pred -ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 94 -SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 94 -~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+++++||+++ .|+++|.+.|.+.+
T Consensus 149 ~~~i~iSA~~g-----------------~~v~~l~~~i~~~l 173 (301)
T 1ega_A 149 LDIVPISAETG-----------------LNVDTIAAIVRKHL 173 (301)
T ss_dssp SEEEECCTTTT-----------------TTHHHHHHHHHTTC
T ss_pred CceEEEECCCC-----------------CCHHHHHHHHHHhC
Confidence 5889999998 56666666665543
No 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.01 E-value=1.5e-09 Score=89.13 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=78.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
...++.||++|+|+|++++.+.++..+...+.. .++|+++|+||+|+.+.. .....+........+....+.|++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEEEEEECGGGSCCC--TTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-cCCcEEEEEECccCCCcc--hHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 368899999999999999888777777776665 689999999999998651 11111111222223322236789999
Q ss_pred eecCCCCcchhh---hhhhhccccccCHHHHHHHHHhHhh
Q psy8220 99 SSRSQKDAQTER---DLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 99 Sa~~~~~~~~~~---~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
||+++.+....+ ...+.....+..+..|.+.|.+...
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~ 368 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVA 368 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 999996655543 3445556677778888888777653
No 25
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.95 E-value=2.1e-09 Score=75.96 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=64.5
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHh-hhhcc
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI-PYNSI 89 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~-~~~~~ 89 (161)
+.++...+..+|++++|+|++++..- ....+...+... .+.|+++|+||+|+.+.. .. ..+.... .....
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~-~~~~~~~~~~~~~ 139 (171)
T 1upt_A 65 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM----TS-SEMANSLGLPALK 139 (171)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----CH-HHHHHHHTGGGCT
T ss_pred hHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC----CH-HHHHHHhCchhcc
Confidence 34445678899999999999887432 122333333321 378999999999997641 01 1122111 11111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 140 ~~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 140 DRKWQIFKTSATKG-----------------TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TSCEEEEECCTTTC-----------------TTHHHHHHHHHHHHHT
T ss_pred CCceEEEECcCCCC-----------------cCHHHHHHHHHHHHhh
Confidence 12456889999999 9999999999887654
No 26
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.94 E-value=4.4e-09 Score=73.86 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh-hhc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-YNS 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-~~~ 88 (161)
++.++...+..+|++++|+|++++.+- ....+...+... .+.|+++|.||+|+.+.. .. +.+..... ...
T Consensus 57 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~-~~~~~~~~~~~~ 131 (164)
T 1r8s_A 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM----NA-AEITDKLGLHSL 131 (164)
T ss_dssp GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----CH-HHHHHHTTGGGC
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC----CH-HHHHHHhCcccc
Confidence 445556778999999999999876321 112233333211 378999999999997641 11 11222211 111
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
...+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 132 ~~~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 132 RHRNWYIQATCATSG-----------------DGLYEGLDWLSNQLR 161 (164)
T ss_dssp SSCCEEEEECBTTTT-----------------BTHHHHHHHHHHHC-
T ss_pred cCccEEEEEcccCCC-----------------cCHHHHHHHHHHHHh
Confidence 112456889999998 999999999987654
No 27
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.94 E-value=2.7e-09 Score=88.93 Aligned_cols=86 Identities=21% Similarity=0.198 Sum_probs=62.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
++.++.||++|+|+|++++....+..+.+.+ .++|+++|+||+|+.+.. .. +.+.. .+. ...+++.+
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l---~~~piivV~NK~DL~~~~----~~-~~~~~---~~~--~~~~~i~i 384 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRKILERI---KNKRYLVVINKVDVVEKI----NE-EEIKN---KLG--TDRHMVKI 384 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHHHHHHH---TTSSEEEEEEECSSCCCC----CH-HHHHH---HHT--CSTTEEEE
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHHHHHHh---cCCCEEEEEECccccccc----CH-HHHHH---Hhc--CCCcEEEE
Confidence 5678999999999999888665555555555 368999999999997531 11 11222 222 23578999
Q ss_pred eecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 99 SSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 99 Sa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
||+++ .|+++|.+.|.+.+
T Consensus 385 SAktg-----------------~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 385 SALKG-----------------EGLEKLEESIYRET 403 (482)
T ss_dssp EGGGT-----------------CCHHHHHHHHHHHT
T ss_pred ECCCC-----------------CCHHHHHHHHHHHH
Confidence 99999 89999999988754
No 28
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.90 E-value=4.5e-09 Score=87.57 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=70.9
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
|.|. .|...+ ...+..+|++|+|+|++++...+..+....+.. .+.|.++|+||+|+.+.. ..........+
T Consensus 81 PGh~--~~~~~~-~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~ip~IvviNK~Dl~~~~----~~~~~~~~l~~ 152 (482)
T 1wb1_A 81 PGHA--DLIRAV-VSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNIPIIVVITKSDNAGTE----EIKRTEMIMKS 152 (482)
T ss_dssp SSHH--HHHHHH-HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTCCBCEEEECTTSSCHH----HHHHHHHHHHH
T ss_pred CChH--HHHHHH-HHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCCCEEEEEECCCcccch----hHHHHHHHHHH
Confidence 5553 345555 688899999999999998765555444444444 578999999999998641 01111112222
Q ss_pred hhccC---CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 86 YNSIQ---SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 86 ~~~~~---~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+... ...+++++||+++ .|+++|++.|.+.++
T Consensus 153 ~l~~~~~~~~~~ii~vSA~~g-----------------~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 153 ILQSTHNLKNSSIIPISAKTG-----------------FGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHSSSGGGCCEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred HHhhhcccccceEEEEECcCC-----------------CCHHHHHHHHHHhhc
Confidence 22111 1467899999999 999999999988764
No 29
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.89 E-value=8.4e-09 Score=84.76 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=70.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
...+..+|++++|+|++.+....+..+...+.. .++|+++|+||+|+.+.. .....+........+....+.|++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~~~~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RGRASVVVFNKWDLVVHR--EKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEEEEEECGGGSTTG--GGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCCCEEEEEECccCCCch--hhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 467889999999999998877666666666655 689999999999997641 11111111122222221235688999
Q ss_pred eecCCCCcchhh---hhhhhccccccCHHHHHHHHHhHh
Q psy8220 99 SSRSQKDAQTER---DLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 99 Sa~~~~~~~~~~---~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
||+++.+....+ ...+.+...+..+..|.+.|.+..
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~ 373 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVL 373 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 999984433332 233444455556666666665544
No 30
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.88 E-value=3.7e-09 Score=76.02 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=65.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh-hc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY-NS 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 88 (161)
++.++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|+||+|+.+.. .. +.+...... ..
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~-~~~~~~~~~~~~ 149 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL----SC-NAIQEALELDSI 149 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----CH-HHHHHHTTGGGC
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC----CH-HHHHHHhChhhc
Confidence 44555677899999999999987643211 2223333211 368999999999997641 11 112222211 01
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
...+.+++.+||+++ .|+++|.+.|.+.+.++
T Consensus 150 ~~~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 150 RSHHWRIQGCSAVTG-----------------EDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CSSCEEEEECCTTTC-----------------TTHHHHHHHHHHHHHTC
T ss_pred cCCceEEEEeeCCCC-----------------CCHHHHHHHHHHHHHhc
Confidence 113457889999998 99999999998877653
No 31
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.88 E-value=1.9e-08 Score=82.88 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCC-------CCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMG-------TRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMA 77 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~-------~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~ 77 (161)
|.|. .|.+.+ ...+..||++|+|+|++++.. .+..+....+.. .+.| +|+|+||+|+.+.+.......
T Consensus 103 PGh~--~f~~~~-~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v~~iIvviNK~Dl~~~~~~~~~~~ 178 (439)
T 3j2k_7 103 PGHK--SFVPNM-IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVNWSNERYE 178 (439)
T ss_pred CChH--HHHHHH-HhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCCCeEEEEeecCCCcccchHHHHHH
Confidence 5553 344555 678899999999999998753 233343333433 4666 899999999964211000111
Q ss_pred HHHHHHhhhhccC-----CCCceeEEeecCC
Q psy8220 78 QIFQTWIPYNSIQ-----SIYSSPRFSSRSQ 103 (161)
Q Consensus 78 ~~~~~~~~~~~~~-----~~~~~i~iSa~~~ 103 (161)
+.......++... ...+++++||+++
T Consensus 179 ~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G 209 (439)
T 3j2k_7 179 ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTG 209 (439)
T ss_pred HHHHHHHHHHHHhcccccCCeeEEEeeccCC
Confidence 1111111222110 1357899999999
No 32
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.87 E-value=5.6e-09 Score=76.07 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=62.6
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh-hhcc
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-YNSI 89 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~ 89 (161)
+.++...+..+|++++|+|++++..- ....+...+... .+.|+++|+||+|+.+.. .. +.+..... ....
T Consensus 87 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~i~~~~~~~~~~ 161 (192)
T 2b6h_A 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM----PV-SELTDKLGLQHLR 161 (192)
T ss_dssp CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----CH-HHHHHHTTGGGCS
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC----CH-HHHHHHhCccccc
Confidence 34456678899999999999876321 112233333221 368999999999997641 11 11222111 1111
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 162 ~~~~~~~~~SA~~g-----------------~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 162 SRTWYVQATCATQG-----------------TGLYDGLDWLSHELS 190 (192)
T ss_dssp SCCEEEEECBTTTT-----------------BTHHHHHHHHHHHTT
T ss_pred CCceEEEECcCCCc-----------------CCHHHHHHHHHHHHh
Confidence 12456889999998 999999999887654
No 33
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.86 E-value=2.8e-09 Score=77.29 Aligned_cols=100 Identities=10% Similarity=0.034 Sum_probs=63.2
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC---------CCCcEEEEeecCCCCCcccccccHHHHHHHH
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT---------PGKKLVIVINKAGKPSTKIQSGSMAQIFQTW 83 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~---------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~ 83 (161)
..++...+..+|++|+|+|++++.+- ....+...+... .+.|+++|+||+|+.+.. .. +.+...
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~~~~~ 151 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK----TA-AELVEI 151 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC----CH-HHHHHH
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC----CH-HHHHHH
Confidence 34445678899999999999876431 112223322210 168999999999997651 11 111111
Q ss_pred hh--hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 84 IP--YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 84 ~~--~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.. .+....+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~Sa~~g-----------------~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 152 LDLTTLMGDHPFVIFASNGLKG-----------------TGVHEGFSWLQETASR 189 (199)
T ss_dssp HTHHHHHTTSCEEEEECBTTTT-----------------BTHHHHHHHHHHHHHH
T ss_pred hcchhhccCCeeEEEEeeCCCc-----------------cCHHHHHHHHHHHHHH
Confidence 11 110113557889999998 9999999999887654
No 34
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.86 E-value=3.4e-09 Score=76.45 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=62.8
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc----HHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC----KVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~----~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
+.++...+..+|++|+|+|++++....+ ..+..++... .+.|+++|.||+|+.+.. .. +....+...
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~~~~~~~~ 162 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL----PV-EMVRAVVDP 162 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC----CH-HHHHHHHCT
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc----CH-HHHHHHHHh
Confidence 3455667899999999999985432222 1222333221 478999999999997641 11 222332222
Q ss_pred hccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 87 NSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 87 ~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+. +++.+||+++ .|++++.+.|.+.+.
T Consensus 163 ----~~~~~~~~~Sa~~~-----------------~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 163 ----EGKFPVLEAVATEG-----------------KGVFETLKEVSRLVL 191 (198)
T ss_dssp ----TCCSCEEECBGGGT-----------------BTHHHHHHHHHHHHH
T ss_pred ----cCCceEEEEecCCC-----------------cCHHHHHHHHHHHHH
Confidence 345 7899999999 999999999887654
No 35
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=3.1e-09 Score=76.70 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=64.3
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh--hc
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY--NS 88 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~--~~ 88 (161)
+.++...+..+|++++|+|++++.+- ....+...+... .+.|+++|+||+|+.+.. .. +.+..+... +.
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~i~~~~~~~~~~ 148 (187)
T 1zj6_A 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM----TV-AEISQFLKLTSIK 148 (187)
T ss_dssp CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC----CH-HHHHHHHTGGGCC
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC----CH-HHHHHHhChhhhc
Confidence 33445677899999999999887431 112233333210 478999999999997641 01 222222221 11
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 149 -~~~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 149 -DHQWHIQACCALTG-----------------EGLCQGLEWMMSRLKI 178 (187)
T ss_dssp -SSCEEEEECBTTTT-----------------BTHHHHHHHHHHHHCC
T ss_pred -CCCcEEEEccCCCC-----------------cCHHHHHHHHHHHHHH
Confidence 12457889999999 9999999999887754
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.86 E-value=6.1e-09 Score=75.69 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=63.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++|+|+|++++....+ ..+...+... .+.|+++|+||+|+.+.. .... +....+...+
T Consensus 88 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~--~v~~-~~~~~~~~~~--- 161 (192)
T 2il1_A 88 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR--EITR-QQGEKFAQQI--- 161 (192)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--CSCH-HHHHHHHHTS---
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--ccCH-HHHHHHHHhc---
Confidence 34455677889999999999987643222 1222222211 368999999999986531 1111 1222332222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 162 ~~~~~~~~SA~~g-----------------~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 162 TGMRFCEASAKDN-----------------FNVDEIFLKLVDDIL 189 (192)
T ss_dssp TTCEEEECBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2567899999998 999999999887654
No 37
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.85 E-value=7.9e-09 Score=73.46 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=63.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc---cCCC--C
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS---IQSI--Y 93 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~--~ 93 (161)
...+..+|++++|+|++++...........+.. .+.|+++|+||+|+.+.. . +.+..+..... ...+ .
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~-~~~p~ilv~nK~Dl~~~~-----~-~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDGVMPQTVEAINHAKA-ANVPIIVAINKMDKPEAN-----P-DRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG-GSCCEEEEEETTTSSCSC-----H-HHHHHHHTTTTCCBTTTTSSE
T ss_pred HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh-CCCCEEEEEECccCCcCC-----H-HHHHHHHHhcCcChhHcCCcc
Confidence 345678999999999988755444444444444 579999999999997641 0 11222222211 0011 3
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+++.+||+++ .|+++|.+.|.+.+..
T Consensus 146 ~~~~~Sa~~~-----------------~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 146 IFCKLSAKTK-----------------EGLDHLLEMILLVSEM 171 (178)
T ss_dssp EEEECCSSSS-----------------HHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCC-----------------CCHHHHHHHHHHhhhh
Confidence 6889999998 9999999999877654
No 38
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.84 E-value=3.1e-09 Score=76.90 Aligned_cols=97 Identities=14% Similarity=0.040 Sum_probs=63.0
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.++...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~~ 152 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK--VVDY-TTAKEFADS----LG 152 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC--CSCH-HHHHHHHHH----TT
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc--ccCH-HHHHHHHHH----cC
Confidence 334567789999999999987532111 2222222211 368999999999997641 1111 112222222 35
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+++.+||+++ .|++++.+.|.+.+..
T Consensus 153 ~~~~~~Sa~~g-----------------~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 153 IPFLETSAKNA-----------------TNVEQSFMTMAAEIKK 179 (196)
T ss_dssp CCEEEECTTTC-----------------TTHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 68899999999 9999999999887654
No 39
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.84 E-value=4e-09 Score=75.59 Aligned_cols=93 Identities=11% Similarity=-0.009 Sum_probs=60.7
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCc-HH----HHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRC-KV----AEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~-~~----i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
+...+..+|++++|+|++++.+-.. .. +.+.... .+.|+++|.||+|+.+.. .... +....+...+ +
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~v~~-~~~~~~~~~~----~ 154 (183)
T 3kkq_A 83 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLR--KVTR-DQGKEMATKY----N 154 (183)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTC--CSCH-HHHHHHHHHH----T
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhcc--CcCH-HHHHHHHHHh----C
Confidence 3556788999999999987632111 11 2222222 478999999999997531 1111 2223333332 4
Q ss_pred CceeEEeec-CCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 93 YSSPRFSSR-SQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 93 ~~~i~iSa~-~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+++.+||+ ++ .|++++.+.|.+.+.
T Consensus 155 ~~~~~~Sa~~~~-----------------~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 155 IPYIETSAKDPP-----------------LNVDKTFHDLVRVIR 181 (183)
T ss_dssp CCEEEEBCSSSC-----------------BSHHHHHHHHHHHHH
T ss_pred CeEEEeccCCCC-----------------CCHHHHHHHHHHHHh
Confidence 678999999 88 899999999987654
No 40
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.84 E-value=2.8e-08 Score=80.88 Aligned_cols=103 Identities=10% Similarity=0.077 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCC-CCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc-
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPM-GTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI- 89 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~-~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 89 (161)
.|...+ ...+..+|++|+|+|++++. ..+..+....+.....+|+++|+||+|+.+.. ...+..+...+++..
T Consensus 95 ~f~~~~-~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~----~~~~~~~~i~~~l~~~ 169 (410)
T 1kk1_A 95 ALMTTM-LAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE----KALENYRQIKEFIEGT 169 (410)
T ss_dssp HHHHHH-HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH----HHHHHHHHHHHHHTTS
T ss_pred HHHHHH-HhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH----HHHHHHHHHHHHHHhc
Confidence 355565 67888999999999999875 22332222223221246899999999998751 000112222333321
Q ss_pred -CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 -QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 -~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
....|++++||+++ .|+++|++.|.+.++.
T Consensus 170 ~~~~~~~i~vSA~~g-----------------~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 170 VAENAPIIPISALHG-----------------ANIDVLVKAIEDFIPT 200 (410)
T ss_dssp TTTTCCEEECBTTTT-----------------BSHHHHHHHHHHHSCC
T ss_pred CcCCCeEEEeeCCCC-----------------CCHHHHHHHHHHhCCC
Confidence 12568999999999 9999999999987653
No 41
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.84 E-value=1.2e-08 Score=73.56 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=62.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh-hhccCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-YNSIQSIY 93 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (161)
...++.+|++++|+|++++..-. ...+...+... .+.|+++|+||+|+.+.. .. +.+..... ......+.
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~-~~~~~~~~~~~~~~~~~ 158 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA----SE-AEIAEQLGVSSIMNRTW 158 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC----CH-HHHHHHTTGGGCCSSCE
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC----CH-HHHHHHhChhhccCCce
Confidence 44678999999999998774321 22333433321 368999999999997641 01 11222211 11111244
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
+++.+||+++ .|+++|.+.|.+.+...
T Consensus 159 ~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 159 TIVKSSSKTG-----------------DGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EEEECCTTTC-----------------TTHHHHHHHHHHHHHHT
T ss_pred EEEEccCCCc-----------------cCHHHHHHHHHHHHHhc
Confidence 6889999998 89999999998877654
No 42
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.83 E-value=1.7e-08 Score=73.02 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh-hhc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-YNS 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-~~~ 88 (161)
+..++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|+||+|+.+.. .. +.+..... ...
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~~~~~~~~~~~ 154 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL----DE-KELIEKMNLSAI 154 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC----CH-HHHHHHTTGGGC
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC----CH-HHHHHHhChhhh
Confidence 44455677899999999999987632111 2223333211 468999999999997641 00 11122111 111
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
...+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 155 ~~~~~~~~~~SA~~g-----------------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 155 QDREICCYSISCKEK-----------------DNIDITLQWLIQHSK 184 (188)
T ss_dssp CSSCEEEEECCTTTC-----------------TTHHHHHHHHHHTCC
T ss_pred ccCCeeEEEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 112446789999998 999999999987654
No 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.83 E-value=1.1e-08 Score=75.43 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC------CCCcEEEEeecCCCCCcccccccHHHHHHHHhh
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT------PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP 85 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~ 85 (161)
+.+..++...+..+|++|+|+|++++... ..+..++... .+.|+++|+||+|+.+.. .... +....+..
T Consensus 95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--~v~~-~~~~~~~~ 169 (217)
T 2f7s_A 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR--EVNE-RQARELAD 169 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC--CSCH-HHHHHHHH
T ss_pred HhHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc--ccCH-HHHHHHHH
Confidence 34566667888999999999999875321 2233333221 358999999999996531 1011 22233332
Q ss_pred hhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 86 YNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 86 ~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
. .+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 170 ~----~~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 170 K----YGIPYFETSAATG-----------------QNVEKAVETLLDLIM 198 (217)
T ss_dssp H----TTCCEEEEBTTTT-----------------BTHHHHHHHHHHHHH
T ss_pred H----CCCcEEEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 2 2567899999998 899999999877653
No 44
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.81 E-value=2.5e-08 Score=81.20 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCC-CCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPM-GTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~-~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
|...+ ...+..+|++|+|+|++++. ..+..+....+.....+|+++|+||+|+.+.. +.....+.+..+..... ..
T Consensus 94 f~~~~-~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~-~~~~~~~~i~~~l~~~~-~~ 170 (408)
T 1s0u_A 94 LMATM-LSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK-QAEENYEQIKEFVKGTI-AE 170 (408)
T ss_dssp HHHHH-HTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT-TTTTHHHHHHHHHTTST-TT
T ss_pred HHHHH-HHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH-HHHHHHHHHHHHHhhcC-CC
Confidence 45555 67788899999999999875 22222222233321246899999999998651 11111112222222111 12
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+++++||+++ .|+++|++.|.+.++.
T Consensus 171 ~~~~i~vSA~~g-----------------~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 171 NAPIIPISAHHE-----------------ANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TCCEEEC-----------------------CHHHHHHHHHHHSCC
T ss_pred CCeEEEeeCCCC-----------------CCHHHHHHHHHHhCCC
Confidence 567899999999 9999999999987653
No 45
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.81 E-value=5.5e-09 Score=75.55 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=62.2
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCC--CCcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhh--hh
Q psy8220 16 EIERSVVEAADVILEVVDARDPMG--TRCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP--YN 87 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~--~~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~ 87 (161)
.++...+..+|++++|+|++++.+ .....+...+... .+.|+++|+||+|+.... .. +.+..+.. .+
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~-~~~~~~~~~~~~ 156 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV----TS-VKVSQLLCLENI 156 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC----CH-HHHHHHHTGGGC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC----CH-HHHHHHhChhhc
Confidence 344567889999999999987532 1112333333321 268999999999997641 11 22222221 11
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
. ..+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 157 ~-~~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 157 K-DKPWHICASDAIKG-----------------EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp C-SSCEEEEECBTTTT-----------------BTHHHHHHHHHHHC-
T ss_pred c-CCceEEEEccCCCC-----------------cCHHHHHHHHHHHHH
Confidence 1 12457889999998 999999999987654
No 46
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.81 E-value=3.9e-09 Score=75.68 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=60.9
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
+..+..+|++++|+|++++.+..+..+...+... .+.|+++|+||+|+.+.. ..+ .. ..+.+++
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----------~~~---~~-~~~~~~~ 143 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET----------LGM---SE-VNGHALI 143 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC----------CEE---EE-ETTEEEE
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcch----------hhh---hh-ccCCceE
Confidence 3568999999999999887765444444333321 368999999999986431 011 11 1245688
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+||+++ .|+++|.+.|.+.+..
T Consensus 144 ~~SA~~g-----------------~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 144 RLSARTG-----------------EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp ECCTTTC-----------------TTHHHHHHHHHHHC--
T ss_pred EEeCCCC-----------------CCHHHHHHHHHHHhhh
Confidence 9999999 9999999999877643
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=2.4e-09 Score=76.36 Aligned_cols=99 Identities=8% Similarity=0.017 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++++|+|++++....+ ..+...+... .+.|+++|+||+|+.+.. .... +....+...
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 145 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER--VVKR-EDGEKLAKE---- 145 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC--CSCH-HHHHHHHHH----
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc--ccCH-HHHHHHHHH----
Confidence 45555778899999999999987643211 1222222211 468999999999997641 1011 122233222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 146 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 146 YGLPFMETSAKTG-----------------LNVDLAFTAIAKELKR 174 (180)
T ss_dssp HTCCEEECCTTTC-----------------TTHHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 2467899999998 9999999999887654
No 48
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.79 E-value=7.5e-09 Score=76.41 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=59.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
...+..+|++|+|+|++++.+..+ ..+...+... .+.|+++|+||+|+.+.. +........+....+.++
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~ 151 (218)
T 4djt_A 79 DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ-------KISKKLVMEVLKGKNYEY 151 (218)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----------CCHHHHHHHTTTCCCEE
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-------ccCHHHHHHHHHHcCCcE
Confidence 445678999999999987643222 1222222211 368999999999997641 000111112221236679
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+.+||+++ .|+++|.+.|.+.+..
T Consensus 152 ~~~Sa~~g-----------------~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 152 FEISAKTA-----------------HNFGLPFLHLARIFTG 175 (218)
T ss_dssp EEEBTTTT-----------------BTTTHHHHHHHHHHHC
T ss_pred EEEecCCC-----------------CCHHHHHHHHHHHHhc
Confidence 99999999 8999999999887754
No 49
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.79 E-value=7.3e-09 Score=86.19 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=61.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCC----CcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGT----RCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~----~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
...+..||++|+|+|++++... .+..+.+.+ .++|+++|+||+|+.+.. . ... +.+......+
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~-------~-~~~--~~l~~~~~~~ 373 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANA-------D-ALI--RAIADGTGTE 373 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTT-------H-HHH--HHHHHHHTSC
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCcc-------c-hhH--HHHHhcCCCc
Confidence 5678999999999999988654 223333333 369999999999998762 1 111 1111101256
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++++||+++ .|+++|.+.|.+.+.
T Consensus 374 ~i~vSAktg-----------------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNG-----------------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTT-----------------BSHHHHHHHHTHHHH
T ss_pred eEEEEECCC-----------------CCHHHHHHHHHHHHh
Confidence 899999999 999999999988876
No 50
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.79 E-value=2.1e-08 Score=72.18 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=62.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh-hc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY-NS 88 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 88 (161)
++.+|...+..+|++++|+|++++..-. ...+.+.+... .+.|+++|.||+|+.+.. .. +.+...... ..
T Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~~~~~~~~~~~ 147 (181)
T 1fzq_A 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA----PA-SEIAEGLNLHTI 147 (181)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC----CH-HHHHHHTTGGGC
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC----CH-HHHHHHhCchhc
Confidence 3455567788999999999998763211 12223332211 368999999999997641 11 112222111 11
Q ss_pred cCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 89 IQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 89 ~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
...+.+++.+||+++ .|++++.+.|.+.+.
T Consensus 148 ~~~~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 148 RDRVWQIQSCSALTG-----------------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp CSSCEEEEECCTTTC-----------------TTHHHHHHHHHHTC-
T ss_pred cCCceEEEEccCCCC-----------------CCHHHHHHHHHHHHH
Confidence 112446788999999 999999999977654
No 51
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.78 E-value=1.1e-08 Score=73.23 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=62.6
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc-cCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS-IQS 91 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~ 91 (161)
++...+..+|++++|+|++++..-. ...+...+.. ..+.|+++|+||+|+.+.. .. +.+..+..... ...
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~-~~i~~~~~~~~~~~~ 152 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL----SA-SEVSKELNLVELKDR 152 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC----CH-HHHHHHTTTTTCCSS
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC----CH-HHHHHHhCcccccCC
Confidence 3456788999999999998764321 1223333321 1468999999999997641 01 22222222111 112
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 153 ~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 153 SWSIVASSAIKG-----------------EGITEGLDWLIDVIKE 180 (183)
T ss_dssp CEEEEEEBGGGT-----------------BTHHHHHHHHHHHHHH
T ss_pred ceEEEEccCCCC-----------------cCHHHHHHHHHHHHHh
Confidence 346889999999 9999999999877643
No 52
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.78 E-value=7.1e-09 Score=85.98 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=65.0
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
.+.+..+|++|+|+|++++....+..+.+.+. .+|+++|+||+|+.+. .... ....+. ...+++.+
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~---~~piivV~NK~Dl~~~--------~~~~-~~~~~~--~~~~~i~i 363 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVK---HRPLILVMNKIDLVEK--------QLIT-SLEYPE--NITQIVHT 363 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT---TSCEEEEEECTTSSCG--------GGST-TCCCCT--TCCCEEEE
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc---CCcEEEEEECCCCCcc--------hhhH-HHHHhc--cCCcEEEE
Confidence 46788999999999999887766666666663 4899999999999875 1111 111111 24578999
Q ss_pred eecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 99 SSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 99 Sa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
||+++ .|+++|.+.|.+.+..
T Consensus 364 SAktg-----------------~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 364 AAAQK-----------------QGIDSLETAILEIVQT 384 (462)
T ss_dssp BTTTT-----------------BSHHHHHHHHHHHHTT
T ss_pred ECCCC-----------------CCHHHHHHHHHHHHhc
Confidence 99999 9999999999887754
No 53
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.78 E-value=3.1e-08 Score=69.46 Aligned_cols=95 Identities=9% Similarity=-0.016 Sum_probs=60.8
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
++...+..+|++++|+|++++.+-.. ..+...+.. ..+.|+++|+||+|+.+.. .... +....+...+ .+
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~~---~~ 140 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER--VVGK-EQGQNLARQW---CN 140 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC--CSCH-HHHHHHHHHT---TS
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccc--cCCH-HHHHHHHHHc---cC
Confidence 33456778999999999987532111 112222211 1479999999999996531 1111 2223333332 25
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+++.+||+++ .|+++|.+.|.+.+
T Consensus 141 ~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 141 CAFLESSAKSK-----------------INVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEECBTTTT-----------------BSHHHHHHHHHHHH
T ss_pred CcEEEecCCCC-----------------CCHHHHHHHHHHHH
Confidence 67899999999 99999999987765
No 54
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.78 E-value=5.1e-08 Score=72.73 Aligned_cols=95 Identities=20% Similarity=0.100 Sum_probs=59.7
Q ss_pred HHhhhccEEEEEEeCCCCCCCC---cHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC--C
Q psy8220 20 SVVEAADVILEVVDARDPMGTR---CKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI--Y 93 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~---~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 93 (161)
.....+|++|+|+|++++.+-. ...+...+... .+.|+++|+||+|+.+.. ... .........+....+ .
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~--~~~--~~~~~~~~~~~~~~~~~~ 179 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD--SLS--IDNKLLIKQILDNVKNPI 179 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCC--HHHHHHHHHHHHHCCSCE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch--hhH--HHHHHHHHHHHHhcCCCc
Confidence 4467889999999998875432 12344444441 278999999999997641 100 111111111111123 5
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+++.+||+++ .|+++|.+.|.+.+.
T Consensus 180 ~~~~~SA~~g-----------------~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 180 KFSSFSTLTG-----------------VGVEQAKITACELLK 204 (228)
T ss_dssp EEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred eEEEEecccC-----------------CCHHHHHHHHHHHHH
Confidence 6889999999 899999999877654
No 55
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.77 E-value=4.2e-09 Score=74.78 Aligned_cols=96 Identities=14% Similarity=0.027 Sum_probs=62.1
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
..++...+..+|++++|+|++++....+ ..+...+... .+.|+++|+||+|+.+.. .... +....+... .
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~ 150 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR--DVTY-EEAKQFAEE----N 150 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCH-HHHHHHHHH----T
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--ccCH-HHHHHHHHH----c
Confidence 3445677889999999999987643211 1222222211 478999999999996431 1111 122332222 3
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+.+++.+||+++ .|++++.+.|.+.+
T Consensus 151 ~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 151 GLLFLEASAKTG-----------------ENVEDAFLEAAKKI 176 (179)
T ss_dssp TCEEEECCTTTC-----------------TTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCC-----------------CCHHHHHHHHHHHH
Confidence 567899999999 99999999987654
No 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.77 E-value=3.8e-09 Score=75.36 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=62.3
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.++...+..+|++++|+|++++.... ...+...+... .+.|+++|+||+|+.+.. .... +....+... .+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~--~~~~-~~~~~~~~~----~~ 148 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR--KVTA-EDAQTYAQE----NG 148 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC--CSCH-HHHHHHHHH----TT
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc--cCCH-HHHHHHHHH----cC
Confidence 34456788999999999998764311 12222223221 368999999999997541 1011 222222222 35
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 149 ~~~~~~Sa~~g-----------------~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 149 LFFMETSAKTA-----------------TNVKEIFYEIARRLPR 175 (181)
T ss_dssp CEEEECCSSSC-----------------TTHHHHHHHHHHTCC-
T ss_pred CEEEEEECCCC-----------------CCHHHHHHHHHHHHHh
Confidence 67899999998 9999999999876643
No 57
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.76 E-value=2e-08 Score=78.46 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhhhccEEEEEEeC-CCCCCCCc-HHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 10 RGVVVQEIERSVVEAADVILEVVDA-RDPMGTRC-KVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 10 ~~~~~~~~~~~~i~~aDviL~VvD~-~~~~~~~~-~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
..+.+...+...+..+|++++|+|+ ..+....+ ..+.+.+.. .++|+++|+||+|+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEECTTSSCS
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-CCCcEEEEEcCcccCCc
Confidence 3456777778999999999999997 44554444 367777765 68999999999999865
No 58
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.76 E-value=3.5e-09 Score=75.96 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=61.7
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
..++...+..+|.+++|+|+.++..... ..+...+.. ..+.|+++|+||+|+.+... . .+....+...+
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~---~-~~~~~~~~~~~--- 138 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV---D-TKQAQDLARSY--- 138 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS---C-HHHHHHHHHHH---
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc---C-HHHHHHHHHHc---
Confidence 3444566788999999999987532111 112221211 14789999999999975410 0 12223333322
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 139 -~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 139 -GIPFIETSAKTR-----------------QGVDDAFYTLVREIR 165 (189)
T ss_dssp -TCCEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 467899999999 899999999877653
No 59
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76 E-value=5.3e-09 Score=75.81 Aligned_cols=99 Identities=9% Similarity=-0.035 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTR-CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
.+..++...+..+|++++|+|++++..-. ...+...+... .+.|+++|.||+|+.+.. .... +....+...+
T Consensus 84 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~~-- 158 (191)
T 3dz8_A 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER--VVPT-EKGQLLAEQL-- 158 (191)
T ss_dssp HCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCH-HHHHHHHHHH--
T ss_pred HHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--ccCH-HHHHHHHHHc--
Confidence 34555677889999999999998653211 12233333221 368999999999986431 1011 2222232322
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 159 --~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 159 --GFDFFEASAKEN-----------------ISVRQAFERLVDAIC 185 (191)
T ss_dssp --TCEEEECBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred --CCeEEEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 567899999999 999999999887664
No 60
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.76 E-value=1e-08 Score=73.61 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=60.5
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh-ccC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN-SIQ 90 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (161)
.++...+..+|++++|+|++++.+-. ...+...+.. ..+.|+++|+||+|+.... .. +.+..+.... ...
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~i~~~~~~~~~~~ 154 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM----TV-AEISQFLKLTSIKD 154 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----CH-HHHHHHTTGGGCCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC----CH-HHHHHHhCcccccC
Confidence 34456788999999999998874321 1223333321 1478999999999997641 00 2222222211 111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGN 132 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~ 132 (161)
.+.+++.+||+++ .|+++|.+.|.+
T Consensus 155 ~~~~~~~~Sa~~g-----------------~gi~~l~~~l~~ 179 (181)
T 2h17_A 155 HQWHIQACCALTG-----------------EGLCQGLEWMMS 179 (181)
T ss_dssp SCEEEEECBTTTT-----------------BTHHHHHHHHHT
T ss_pred CceEEEEccCCCC-----------------cCHHHHHHHHHh
Confidence 2446889999998 999999998865
No 61
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.76 E-value=4.6e-08 Score=82.32 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+...+..+|.+|+|+|++.+...+...+...+.. .+.|+++|+||+|+...
T Consensus 99 ~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~-~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 99 TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL-RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT-TTCCEEEEEECTTSCCS
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCCCEEEEEeCCCCccc
Confidence 3678899999999999999877666666666665 68999999999999654
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.76 E-value=1.7e-08 Score=70.59 Aligned_cols=97 Identities=10% Similarity=0.054 Sum_probs=61.9
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
..++...+..+|.+++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+...
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 138 (168)
T 1u8z_A 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--QVSV-EEAKNRADQ---- 138 (168)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC--CSCH-HHHHHHHHH----
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC--ccCH-HHHHHHHHH----
Confidence 3455667889999999999987532111 1111122110 378999999999986531 1111 222333222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 139 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 139 WNVNYVETSAKTR-----------------ANVDKVFFDLMREIR 166 (168)
T ss_dssp HTCEEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2467899999998 899999999877654
No 63
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.76 E-value=3.9e-09 Score=74.33 Aligned_cols=94 Identities=14% Similarity=-0.004 Sum_probs=61.7
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
+...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. ... +....+...+ +.+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~---~~~-~~~~~~~~~~----~~~ 140 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV---VTA-DQGEALAKEL----GIP 140 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC---SCH-HHHHHHHHHH----TCC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc---cCH-HHHHHHHHHc----CCe
Confidence 3566789999999999987643111 2222222211 368999999999995431 011 2223332222 467
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
++.+||+++ .|+++|.+.|.+.+..
T Consensus 141 ~~~~Sa~~~-----------------~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 141 FIESSAKND-----------------DNVNEIFFTLAKLIQE 165 (170)
T ss_dssp EEECBTTTT-----------------BSHHHHHHHHHHHHHH
T ss_pred EEEEECCCC-----------------CCHHHHHHHHHHHHHH
Confidence 899999998 9999999999887754
No 64
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.75 E-value=6.8e-09 Score=74.54 Aligned_cols=98 Identities=8% Similarity=-0.051 Sum_probs=64.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...+..+|++++|+|++++....+ ..+...+... .+.|+++|+||+|+.+.. .... +....+...+
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~~-- 157 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR--AVKE-EEARELAEKY-- 157 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGC--CSCH-HHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--ccCH-HHHHHHHHHc--
Confidence 44555778899999999999987643222 2222222210 368999999999996531 0011 2223333222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 158 --~~~~~~~Sa~~~-----------------~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 158 --GIPYFETSAANG-----------------TNISHAIEMLLDLIM 184 (195)
T ss_dssp --TCCEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred --CCCEEEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 467899999998 899999999887654
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.74 E-value=1.1e-08 Score=73.82 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=60.9
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
.++...+..+|++|+|+|++++.+..+ ..+...+....+.|+++|+||+|+.... ... +....+... .+.+
T Consensus 108 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~---~~~-~~~~~~~~~----~~~~ 179 (208)
T 3clv_A 108 SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ---VDI-LEVQKYAQD----NNLL 179 (208)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC---SCH-HHHHHHHHH----TTCE
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc---CCH-HHHHHHHHH----cCCc
Confidence 344667889999999999987643221 1222223221358999999999942221 111 222333222 3568
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++.+||+++ .|+++|.+.|.+.+.
T Consensus 180 ~~~~Sa~~~-----------------~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 180 FIQTSAKTG-----------------TNIKNIFYMLAEEIY 203 (208)
T ss_dssp EEEECTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred EEEEecCCC-----------------CCHHHHHHHHHHHHH
Confidence 899999999 999999999887654
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.74 E-value=2.6e-09 Score=74.86 Aligned_cols=95 Identities=9% Similarity=-0.063 Sum_probs=60.8
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc--HH---HHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC--KV---AEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~--~~---i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.++...+..+|.+++|+|+.++..... .. +.+.... .+.|+++|+||+|+.+.. .... +....+...
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 137 (167)
T 1kao_A 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESER--EVSS-SEGRALAEE---- 137 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGC--CSCH-HHHHHHHHH----
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccc--cCCH-HHHHHHHHH----
Confidence 344567789999999999987532111 11 2222211 478999999999986531 1011 112222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 138 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 WGCPFMETSAKSK-----------------TMVDELFAEIVRQMN 165 (167)
T ss_dssp HTSCEEEECTTCH-----------------HHHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCC-----------------cCHHHHHHHHHHHHh
Confidence 2567899999998 899999999887654
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.74 E-value=1.5e-08 Score=70.66 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=60.9
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
++...+..+|.+++|+|++++..... ..+...+... .+.|+++|+||+|+.+... . .+....+... .+
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~---~-~~~~~~~~~~----~~ 138 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV---E-SRQAQDLARS----YG 138 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS---C-HHHHHHHHHH----HT
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhccc---C-HHHHHHHHHH----cC
Confidence 33456788999999999986532111 1222222211 3789999999999976310 1 1222333322 24
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 139 ~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 139 IPYIETSAKTR-----------------QGVEDAFYTLVREIR 164 (166)
T ss_dssp CCEEEECTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred CeEEEecCCCC-----------------CCHHHHHHHHHHHHH
Confidence 67899999998 899999999987654
No 68
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.74 E-value=4.9e-08 Score=83.28 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=71.0
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
+|.|.- |..+. ...+..+|.+|+|+|++++...+.......... .+.|+++|+||+|+.... .......+.
T Consensus 80 TPGh~d--F~~ev-~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~~ipiIvviNKiDl~~a~-----~~~v~~el~ 150 (600)
T 2ywe_A 80 TPGHVD--FSYEV-SRALAACEGALLLIDASQGIEAQTVANFWKAVE-QDLVIIPVINKIDLPSAD-----VDRVKKQIE 150 (600)
T ss_dssp CCCSGG--GHHHH-HHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-TTCEEEEEEECTTSTTCC-----HHHHHHHHH
T ss_pred CCCcHh--HHHHH-HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-CCCCEEEEEeccCccccC-----HHHHHHHHH
Confidence 355543 34444 678899999999999998876544443333333 579999999999997641 112222232
Q ss_pred hhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 85 PYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 85 ~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+.+. ....+++++||+++ .|+++|++.|.+.++.
T Consensus 151 ~~lg-~~~~~vi~vSAktg-----------------~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 151 EVLG-LDPEEAILASAKEG-----------------IGIEEILEAIVNRIPP 184 (600)
T ss_dssp HTSC-CCGGGCEECBTTTT-----------------BSHHHHHHHHHHHSCC
T ss_pred HhhC-CCcccEEEEEeecC-----------------CCchHHHHHHHHhccc
Confidence 3322 01124799999999 9999999999988864
No 69
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.74 E-value=8.4e-09 Score=72.52 Aligned_cols=98 Identities=10% Similarity=-0.061 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...+..+|++++|+|.+++.+-.. ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~--- 135 (166)
T 3q72_A 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR--EVSV-DEGRACAVV--- 135 (166)
T ss_dssp -----------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSC--CSCH-HHHHHHHHH---
T ss_pred chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc--ccCH-HHHHHHHHH---
Confidence 34444567789999999999987632111 1122222221 368999999999997641 1111 111222222
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 136 -~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 136 -FDCKFIETSAALH-----------------HNVQALFEGVVRQIR 163 (166)
T ss_dssp -TTCEEEECBGGGT-----------------BSHHHHHHHHHHHHH
T ss_pred -hCCcEEEeccCCC-----------------CCHHHHHHHHHHHHH
Confidence 3568899999999 999999999987654
No 70
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.74 E-value=5.6e-10 Score=86.45 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=60.7
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEe
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFS 99 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS 99 (161)
.....+|++++|+|++.. .....+...+.+ .+.|+++|+||+|+.+.. ... .....+.+. .+.|++++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~-~~~p~ivv~NK~Dl~~~~--~~~--~~~~~l~~~----lg~~~i~~S 149 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNL--ERNLYLTLQLLE-LGIPCIVALNMLDIAEKQ--NIR--IEIDALSAR----LGCPVIPLV 149 (274)
T ss_dssp HHHTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HTCCEEEEEECHHHHHHT--TEE--ECHHHHHHH----HTSCEEECC
T ss_pred HhhcCCCEEEEEecCCCh--HHHHHHHHHHHh-cCCCEEEEEECccchhhh--hHH--HHHHHHHHh----cCCCEEEEE
Confidence 345799999999999863 223334444544 579999999999986431 000 011222222 257899999
Q ss_pred ecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 100 SRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
|+++ .|+++|.+.|.+.++.
T Consensus 150 A~~g-----------------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 150 STRG-----------------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp CGGG-----------------HHHHHHHHHHHTCCCC
T ss_pred cCCC-----------------CCHHHHHHHHHHHHhc
Confidence 9998 8999999999877654
No 71
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.73 E-value=1.2e-08 Score=83.04 Aligned_cols=126 Identities=12% Similarity=-0.011 Sum_probs=69.1
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
|.|.. |.... ...+..+|++|+|+|++++...+..+....+.. .+.| +++|+||+|+.+.........+.+..+.
T Consensus 83 pG~~~--f~~~~-~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~-~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 83 PGHAD--YIKNM-ITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp CCSGG--GHHHH-HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred CChHH--HHHHH-HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 55442 44455 677889999999999998876555555555544 5778 8899999999853100000001122222
Q ss_pred hhhcc-CCCCceeEEeecCCCCcchhhhhhh-hccccccCHHHHHHHHHhHhh
Q psy8220 85 PYNSI-QSIYSSPRFSSRSQKDAQTERDLKA-INVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 85 ~~~~~-~~~~~~i~iSa~~~~~~~~~~~~~~-~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+.. ....|++++||+++.+.....+... ....-..|+.+|++.|.++++
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 22210 0135789999998711000000000 000000128899999988775
No 72
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.73 E-value=3.3e-09 Score=74.70 Aligned_cols=96 Identities=9% Similarity=-0.009 Sum_probs=62.1
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.++...+..+|++++|+|++++..... ..+...+... ...|+++|.||+|+.+.. ... .+....+... .+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~--~v~-~~~~~~~~~~----~~ 142 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR--EVM-ERDAKDYADS----IH 142 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC--CSC-HHHHHHHHHH----TT
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc--ccC-HHHHHHHHHH----cC
Confidence 344567789999999999987643211 2232333221 468899999999997531 000 1222222222 35
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 143 ~~~~~~Sa~~~-----------------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 AIFVETSAKNA-----------------ININELFIEISRRIP 168 (170)
T ss_dssp CEEEECBTTTT-----------------BSHHHHHHHHHHHCC
T ss_pred CEEEEEeCCCC-----------------cCHHHHHHHHHHHHh
Confidence 67899999998 999999999877653
No 73
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.73 E-value=1.2e-09 Score=83.85 Aligned_cols=83 Identities=18% Similarity=0.109 Sum_probs=58.9
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
..+|++++|+|++.+ .....+...+.+ .+.|+++|+||+|+.+.. ... .....+... .+.|++++||++
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~-~~~pvilv~NK~Dl~~~~--~~~--~~~~~l~~~----lg~~vi~~SA~~ 150 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFE-LGKPVVVALNMMDIAEHR--GIS--IDTEKLESL----LGCSVIPIQAHK 150 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTT-SCSCEEEEEECHHHHHHT--TCE--ECHHHHHHH----HCSCEEECBGGG
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHH-cCCCEEEEEEChhcCCcC--CcH--HHHHHHHHH----cCCCEEEEECCC
Confidence 889999999999873 233445555655 689999999999986531 000 001222222 257899999999
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+ .|+++|.+.|.+.
T Consensus 151 g-----------------~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 N-----------------IGIPALQQSLLHC 164 (256)
T ss_dssp T-----------------BSHHHHHHHHHTC
T ss_pred C-----------------CCHHHHHHHHHhh
Confidence 9 8999999998776
No 74
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.71 E-value=1.1e-08 Score=86.20 Aligned_cols=121 Identities=11% Similarity=0.033 Sum_probs=81.0
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC-CCCceeE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ-SIYSSPR 97 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 97 (161)
...+..+|++|+|+|++++...+..+...++.. .+.|+++|+||+|+.+..... ....+..+....... ...++++
T Consensus 70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~-~~vPiIVViNKiDl~~~~~~~--v~~~l~~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 70 ARGTQVTDIVILVVAADDGVMKQTVESIQHAKD-AHVPIVLAINKCDKAEADPEK--VKKELLAYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHT-TTCCEEECCBSGGGTTTSCCS--SSSHHHHTTSCCCCSSSSEEECC
T ss_pred HHHHccCCEEEEEEECCCCccHHHHHHHHHHHH-cCCcEEEEEecccccccchHH--HHHHHHhhhhhHHhcCCCceEEE
Confidence 356778999999999998876666666666665 689999999999987531100 001112111111100 1246889
Q ss_pred EeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCC------------------C--CCceEEEEEeecCCCccc
Q psy8220 98 FSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKD------------------I--KTSITVGVVGECNIAGSI 157 (161)
Q Consensus 98 iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~------------------~--~~~~~v~vvG~pNVGKSs 157 (161)
+||+++ .|+++|++.|...++... + ..++..+.|+.+++++++
T Consensus 147 vSAktG-----------------~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd 209 (537)
T 3izy_P 147 VSALTG-----------------ENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGS 209 (537)
T ss_dssp CCSSSS-----------------CSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEE
T ss_pred EECCCC-----------------CCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCC
Confidence 999999 999999999987753210 0 124677889999999987
Q ss_pred cc
Q psy8220 158 RD 159 (161)
Q Consensus 158 l~ 159 (161)
.+
T Consensus 210 ~v 211 (537)
T 3izy_P 210 IL 211 (537)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 75
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.71 E-value=8.5e-09 Score=75.50 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=60.8
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhc--
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNS-- 88 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~-- 88 (161)
+.+|...+..+|++++|+|++++.+-. ...+.+.+... .+.|+++|.||+|+.... .. +.+..+.....
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~~~~~~~~~~~~ 157 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI----SE-ERLREMFGLYGQT 157 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC----CH-HHHHHHHTCTTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC----CH-HHHHHHhCccccc
Confidence 344456788999999999998763211 12233333210 478999999999997531 01 22333332110
Q ss_pred ---------c--CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 89 ---------I--QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 89 ---------~--~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
. ....+++.+||+++ .|++++.+.|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~SA~~g-----------------~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 158 TGKGSVSLKELNARPLEVFMCSVLKR-----------------QGYGEGFRWMAQY 196 (198)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTT-----------------BSHHHHHHHHHTT
T ss_pred ccccccccccccCceEEEEEEECCCC-----------------CCHHHHHHHHHHh
Confidence 0 02345788999999 9999999988654
No 76
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.71 E-value=7e-09 Score=72.88 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=61.4
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC-C-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG-T-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~-~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
..++...+..+|++++|+|++++.+-.. ..+...+.. . .+.|+++|.||+|+.+.. .... +....+... .
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~ 141 (170)
T 1r2q_A 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR--AVDF-QEAQSYADD----N 141 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--CSCH-HHHHHHHHH----T
T ss_pred hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc--ccCH-HHHHHHHHH----c
Confidence 3344667889999999999987632111 112222221 1 368899999999986531 1111 112222222 3
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+++.+||+++ .|+++|.+.|.+.++
T Consensus 142 ~~~~~~~Sa~~g-----------------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 142 SLLFMETSAKTS-----------------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp TCEEEECCTTTC-----------------TTHHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCC-----------------CCHHHHHHHHHHHHh
Confidence 567889999999 999999999877654
No 77
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.70 E-value=2.3e-08 Score=76.37 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=54.5
Q ss_pred hccEEEEEEeCCCC--CCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeE
Q psy8220 24 AADVILEVVDARDP--MGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPR 97 (161)
Q Consensus 24 ~aDviL~VvD~~~~--~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 97 (161)
.||++|+|+|++++ .+-.. ..+...+... .+.|+++|.||+|+.+. ..+...........+.+++.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--------~~v~~~~~~~~~~~~~~~~e 233 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--------RYIRDAHTFALSKKNLQVVE 233 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--------HHHHHHHHHHHTSSSCCEEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--------HHHHHHHHHHHhcCCCeEEE
Confidence 69999999999876 32111 1122222110 46899999999999754 21222222222112567899
Q ss_pred EeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 98 FSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 98 iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+||+++ .|+++|.+.|.+.+
T Consensus 234 ~SAk~g-----------------~gv~elf~~l~~~l 253 (255)
T 3c5h_A 234 TSARSN-----------------VNVDLAFSTLVQLI 253 (255)
T ss_dssp CBTTTT-----------------BSHHHHHHHHHHHH
T ss_pred EECCCC-----------------CCHHHHHHHHHHHh
Confidence 999999 99999999987655
No 78
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.70 E-value=1.9e-08 Score=80.46 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=63.1
Q ss_pred HHHhhhccEEEEEEeCCCCCCC----CcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 19 RSVVEAADVILEVVDARDPMGT----RCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~----~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+.++.+|++|+|+|+++.... ....+...+... .++|+++|+||+|+.+.. +..+.+.+.+.
T Consensus 231 l~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~-------e~~~~l~~~l~-- 301 (342)
T 1lnz_A 231 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-------ENLEAFKEKLT-- 301 (342)
T ss_dssp HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-------HHHHHHHHHCC--
T ss_pred HHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH-------HHHHHHHHHhh--
Confidence 4567789999999999763211 112233333321 369999999999997651 22344444443
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
...+++++||+++ .|+++|++.|.+.+...
T Consensus 302 ~~~~v~~iSA~tg-----------------~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 302 DDYPVFPISAVTR-----------------EGLRELLFEVANQLENT 331 (342)
T ss_dssp SCCCBCCCSSCCS-----------------STTHHHHHHHHHHHTSC
T ss_pred cCCCEEEEECCCC-----------------cCHHHHHHHHHHHHhhC
Confidence 2257889999998 99999999999887643
No 79
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.70 E-value=2.6e-08 Score=78.97 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=63.5
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh-hhccC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-YNSIQ 90 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (161)
.++...+..+|++|+|+|++++.+- ....+...+... .+.|+++|+||+|+.+.. .. +.+..... .....
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~----~~-~~i~~~~~~~~~~~ 298 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM----NA-AEITDKLGLHSLRH 298 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----CH-HHHHHHHTCTTCCS
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc----CH-HHHHHHhchhhhhc
Confidence 3445678899999999999876432 122333433321 378999999999997651 11 11121111 11111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+++.+||+++ .|+++|++.|.+.+..
T Consensus 299 ~~~~~~~vSAk~g-----------------~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 299 RNWYIQATCATSG-----------------DGLYEGLDWLSNQLRN 327 (329)
T ss_dssp SCEEEEECBTTTT-----------------BTHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCC-----------------cCHHHHHHHHHHHHHh
Confidence 2446889999999 9999999999887653
No 80
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.70 E-value=1.9e-08 Score=70.62 Aligned_cols=99 Identities=11% Similarity=-0.039 Sum_probs=61.5
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.++...+..+|++++|+|++++.+..+ ..+...+... .+.|+++|+||+|+.+......-..+....+... .+
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~----~~ 142 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE----KG 142 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH----HT
T ss_pred hhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH----cC
Confidence 344667889999999999987633211 1122222211 3689999999999865310000001112222222 25
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 143 ~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 LLFFETSAKTG-----------------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp CEEEECCTTTC-----------------TTHHHHHHHHHTTSC
T ss_pred CEEEEEeCCCC-----------------CCHHHHHHHHHHHHh
Confidence 67899999998 899999999877553
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.69 E-value=5.7e-09 Score=73.49 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=61.6
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCC-CcHHHHHHHhC---C-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGT-RCKVAEDLVVG---T-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~-~~~~i~~~l~~---~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.++...+..+|++++|+|++++... ....+...+.. . .+.|+++|+||+|+.+.. .... .....+...
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~--~v~~-~~~~~~~~~---- 138 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR--EVQS-SEAEALART---- 138 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC--CSCH-HHHHHHHHH----
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc--ccCH-HHHHHHHHH----
Confidence 3445677889999999999875321 11222222221 0 368999999999986531 1010 111222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 139 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 139 WKCAFMETSAKLN-----------------HNVKELFQELLNLEKR 167 (172)
T ss_dssp HTCEEEECBTTTT-----------------BSHHHHHHHHHHTCCS
T ss_pred hCCeEEEecCCCC-----------------cCHHHHHHHHHHHHhh
Confidence 2467899999999 9999999999887654
No 82
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.69 E-value=9.8e-09 Score=73.34 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=61.3
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-H----HHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-K----VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~----~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.++...+..+|.+++|+|++++..... . .+...... .+.|+++|+||+|+.+.. .... +....+...
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 152 (187)
T 2a9k_A 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKR--QVSV-EEAKNRAEQ---- 152 (187)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGC--CSCH-HHHHHHHHH----
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccC--ccCH-HHHHHHHHH----
Confidence 444567889999999999987532111 1 11222211 378999999999986531 1111 122222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 153 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 153 WNVNYVETSAKTR-----------------ANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCEEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCC-----------------CCHHHHHHHHHHHHH
Confidence 3567899999998 899999999887654
No 83
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.69 E-value=7.8e-09 Score=73.50 Aligned_cols=93 Identities=12% Similarity=-0.009 Sum_probs=60.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+.+++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~~~~~~ 148 (181)
T 3tw8_B 76 STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK--VVET-EDAYKFAGQ----MGIQLF 148 (181)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGC--CSCH-HHHHHHHHH----HTCCEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhc--ccCH-HHHHHHHHH----cCCeEE
Confidence 456789999999999987532211 1122222221 368999999999986541 1011 112222222 256789
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+||+++ .|+++|.+.|.+.+.
T Consensus 149 ~~Sa~~~-----------------~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 149 ETSAKEN-----------------VNVEEMFNCITELVL 170 (181)
T ss_dssp ECBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred EEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 9999999 999999999987664
No 84
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.68 E-value=3.1e-08 Score=82.32 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=63.4
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhh-hhccC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-YNSIQ 90 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (161)
.++...++.+|++|+|+|++++..- ....+..++... .++|+|+|+||+|+.+.. .. ..+..... .....
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~-~~~~~~~~~~~~~~ 455 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM----KP-HEIQEKLGLTRIRD 455 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC----CH-HHHHHHTTCTTCCS
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC----CH-HHHHHHhchhhhhc
Confidence 3456788999999999999876321 112333333221 378999999999997541 11 11221111 11111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
.+.+++.+||+++ .|+++|++.|.+.+...
T Consensus 456 ~~~~~~~~SA~~g-----------------~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 456 RNWYVQPSCATSG-----------------DGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp SCEEEEECBTTTT-----------------BTHHHHHHHHHHHCC--
T ss_pred CCeEEEEEECCCC-----------------CCHHHHHHHHHHHHHhc
Confidence 2346889999999 99999999998877543
No 85
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.68 E-value=2.7e-08 Score=72.07 Aligned_cols=101 Identities=12% Similarity=-0.061 Sum_probs=64.9
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
..++...+..+|++++|+|++++.+-.+ ..+...+... .+.|+++|.||+|+.+...+.... +....+...+
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~---- 159 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTK-QEGDDLCQKL---- 159 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCH-HHHHHHHHHH----
T ss_pred HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccH-HHHHHHHHhc----
Confidence 3444567889999999999987643222 2233333321 368999999999997531111111 2233333333
Q ss_pred CCc-eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 92 IYS-SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 92 ~~~-~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
+.+ ++.+||+++ .|+++|.+.|.+.+...
T Consensus 160 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 160 GCVAYIEASSVAK-----------------IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TCSCEEECBTTTT-----------------BSHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeecCCC-----------------CCHHHHHHHHHHHHHhc
Confidence 344 889999999 99999999998876543
No 86
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.68 E-value=9e-09 Score=75.07 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=62.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++|+|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+...+
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~~--- 143 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER--VVSS-ERGRQLADHL--- 143 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC--CSCH-HHHHHHHHHH---
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccc--ccCH-HHHHHHHHHC---
Confidence 34455778899999999999987532111 1222222211 368999999999997641 1111 2223333332
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+.+++.+||+++ .|+++|.+.|.+.+
T Consensus 144 -~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 144 -GFEFFEASAKDN-----------------INVKQTFERLVDVI 169 (203)
T ss_dssp -TCEEEECBTTTT-----------------BSSHHHHHHHHHHH
T ss_pred -CCeEEEEECCCC-----------------CCHHHHHHHHHHHH
Confidence 467899999998 89999888887655
No 87
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.68 E-value=6.5e-09 Score=75.12 Aligned_cols=94 Identities=9% Similarity=-0.039 Sum_probs=61.8
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
+...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+...+ +.+
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~~----~~~ 160 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER--VVPA-EDGRRLADDL----GFE 160 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCH-HHHHHHHHHH----TCE
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc--CCCH-HHHHHHHHHc----CCe
Confidence 3567789999999999987532211 2222333221 368999999999997531 1111 2223333332 467
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++.+||+++ .|+++|.+.|.+.+.
T Consensus 161 ~~~~Sa~~g-----------------~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 161 FFEASAKEN-----------------INVKQVFERLVDVIC 184 (189)
T ss_dssp EEECBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred EEEEECCCC-----------------CCHHHHHHHHHHHHH
Confidence 899999998 999999999987664
No 88
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.68 E-value=1.3e-08 Score=72.24 Aligned_cols=94 Identities=15% Similarity=0.031 Sum_probs=60.3
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCC--cHHHHHH---HhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTR--CKVAEDL---VVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~---l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
+...+..+|++++|+|++++.+-. ...+... ... .+.|+++|+||+|+.+.. .... +....+... .+
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~----~~ 145 (181)
T 2fn4_A 74 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQR--QVPR-SEASAFGAS----HH 145 (181)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGC--CSCH-HHHHHHHHH----TT
T ss_pred HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccc--ccCH-HHHHHHHHH----cC
Confidence 345678899999999998753211 1111122 122 478999999999997531 1011 112222222 35
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 146 ~~~~~~Sa~~~-----------------~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 146 VAYFEASAKLR-----------------LNVDEAFEQLVRAVRK 172 (181)
T ss_dssp CEEEECBTTTT-----------------BSHHHHHHHHHHHHHH
T ss_pred CeEEEecCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 67899999998 9999999999877643
No 89
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.68 E-value=1e-08 Score=84.09 Aligned_cols=89 Identities=16% Similarity=0.038 Sum_probs=65.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRF 98 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 98 (161)
...+..+|++|+|+|+ ........+...+.+ .+.|+++|+||+|+.+.. . . ...+.+.+..+.+++.+
T Consensus 108 ~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~-~~~piIvV~NK~Dl~~~~--~----~---~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 108 RRVFYRADCGILVTDS--APTPYEDDVVNLFKE-MEIPFVVVVNKIDVLGEK--A----E---ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH-TTCCEEEECCCCTTTTCC--C----T---HHHHHSSCCTTCCCCCC
T ss_pred HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh-cCCCEEEEEeCcCCCCcc--H----H---HHHHHHHHHcCCCEEEE
Confidence 5678899999999998 334455566666665 589999999999998652 0 0 11122332235688999
Q ss_pred eecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 99 SSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 99 Sa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
||+++ .|+++|.+.|.+.++.
T Consensus 176 SAktg-----------------~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 176 SALQK-----------------KGFDDIGKTISEILPG 196 (423)
T ss_dssp SSCCT-----------------TSTTTHHHHHHHHSCC
T ss_pred ECCCC-----------------CCHHHHHHHHHHhhhh
Confidence 99998 8999999999988843
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.67 E-value=2.4e-08 Score=72.59 Aligned_cols=96 Identities=19% Similarity=0.078 Sum_probs=59.8
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCC--cHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhh----
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTR--CKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYN---- 87 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~--~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~---- 87 (161)
.++...+..+|++++|+|++++.+-. ...+...+... .+.|+++|.||+|+.+.. .. +.+..+....
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~-~~~~~~~~~~~~~~ 156 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV----SE-AELRSALGLLNTTG 156 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC----CH-HHHHHHTTCSSCCC
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC----CH-HHHHHHhCCccccc
Confidence 34456678999999999998764211 12222332210 468999999999997531 11 2223322211
Q ss_pred ----ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 88 ----SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 88 ----~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
......+++.+||+++ .|++++.+.|.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 157 SQRIEGQRPVEVFMCSVVMR-----------------NGYLEAFQWLSQY 189 (190)
T ss_dssp ---CCSSCCEEEEECBTTTT-----------------BSHHHHHHHHHTT
T ss_pred cccccccceEEEEEeECCcC-----------------CCHHHHHHHHHhh
Confidence 0012346788999998 9999999988653
No 91
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.66 E-value=5e-09 Score=75.04 Aligned_cols=98 Identities=12% Similarity=-0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~---- 142 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR--QVSK-ERGEKLALD---- 142 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC--CSCH-HHHHHHHHH----
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC--cCCH-HHHHHHHHH----
Confidence 34455667889999999999987532111 1122222211 368999999999997531 1011 222333332
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 143 ~~~~~~~~Sa~~~-----------------~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 143 YGIKFMETSAKAN-----------------INVENAFFTLARDIK 170 (183)
T ss_dssp HTCEEEECCC--------------------CCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2467899999998 899999999877654
No 92
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.66 E-value=2.4e-08 Score=72.21 Aligned_cols=95 Identities=12% Similarity=-0.054 Sum_probs=61.7
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
++...+..+|++|+|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+.
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~~~ 162 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR--EVPT-EEARMFAEN----NGL 162 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGC--CSCH-HHHHHHHHH----TTC
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccc--ccCH-HHHHHHHHH----cCC
Confidence 34567789999999999987643111 2233333321 368999999999997531 1011 112222222 356
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+++.+||+++ .|+++|.+.|.+.+.
T Consensus 163 ~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 163 LFLETSALDS-----------------TNVELAFETVLKEIF 187 (193)
T ss_dssp EEEEECTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 7899999998 899999999876653
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=1.3e-08 Score=73.64 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=62.2
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCC-cHHHHHHH---hCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTR-CKVAEDLV---VGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~-~~~i~~~l---~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.++...+..+|++++|+|++++.+.. ...+...+ ... .+.|+++|+||+|+.+... .. +....+...
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~---~~-~~~~~~~~~---- 142 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV---DT-REAQAVAQE---- 142 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS---CH-HHHHHHHHH----
T ss_pred HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc---CH-HHHHHHHHH----
Confidence 44456778999999999998753211 11222222 110 2689999999999976411 11 112222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 143 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 143 WKCAFMETSAKMN-----------------YNVKELFQELLTLETR 171 (199)
T ss_dssp HTCEEEECBTTTT-----------------BSHHHHHHHHHHHCSS
T ss_pred hCCeEEEEecCCC-----------------CCHHHHHHHHHHHHhh
Confidence 2467899999999 9999999999887654
No 94
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.65 E-value=5.3e-08 Score=69.16 Aligned_cols=100 Identities=15% Similarity=0.026 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC------CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG------TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~------~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
+..++...+..+|++++|+|++++..... ..+...+.. ..+.|+++|+||+|+.+.. +.... +....+...
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~v~~-~~~~~~~~~ 148 (182)
T 1ky3_A 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSE-KSAQELAKS 148 (182)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCH-HHHHHHHHH
T ss_pred hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc-ccCCH-HHHHHHHHh
Confidence 44555677899999999999987643111 112211211 0368999999999996431 00011 222333332
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
. ...+++.+||+++ .|+++|.+.|.+.+.
T Consensus 149 ~---~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 149 L---GDIPLFLTSAKNA-----------------INVDTAFEEIARSAL 177 (182)
T ss_dssp T---TSCCEEEEBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred c---CCCeEEEEecCCC-----------------CCHHHHHHHHHHHHH
Confidence 2 3567899999999 999999999887653
No 95
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=1.2e-08 Score=74.13 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=62.2
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.++...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~--~v~~-~~~~~~~~~----~~ 159 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR--EVPL-KDAKEYAES----IG 159 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--CSCH-HHHHHHHHT----TT
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc--ccCH-HHHHHHHHH----cC
Confidence 334567789999999999987642111 1222222221 368999999999996431 1111 222222222 35
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 160 ~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 160 AIVVETSAKNA-----------------INIEELFQGISRQIPP 186 (192)
T ss_dssp CEEEECBTTTT-----------------BSHHHHHHHHHHTCC-
T ss_pred CEEEEEeCCCC-----------------cCHHHHHHHHHHHHHh
Confidence 67899999998 9999999999877643
No 96
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.65 E-value=1.8e-08 Score=73.87 Aligned_cols=99 Identities=12% Similarity=-0.027 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++++|+|++++..-.. ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~--~v~~-~~~~~~~~~---- 163 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR--EVSL-AEAQSLAEH---- 163 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCH-HHHHHHHHH----
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccc--ccCH-HHHHHHHHH----
Confidence 34455678899999999999987532111 1222223211 468999999999997531 1111 222333332
Q ss_pred CCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+. +++.+||+++ .|+++|.+.|.+.+..
T Consensus 164 ~~~~~~~~~SA~~g-----------------~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 164 YDILCAIETSAKDS-----------------SNVEEAFLRVATELIM 193 (201)
T ss_dssp TTCSEEEECBTTTT-----------------BSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 245 7899999998 9999999999877643
No 97
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.65 E-value=1.8e-08 Score=72.58 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+..++...+..+|++++|+|+.++....+ ..+...+.. ..+.|+++|+||+|+.+... . .+....+...+
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~---~-~~~~~~~~~~~-- 155 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV---D-TKQAHELAKSY-- 155 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS---C-HHHHHHHHHHH--
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccC---C-HHHHHHHHHHc--
Confidence 34455677899999999999987643111 112222211 03689999999999976310 1 12223333332
Q ss_pred CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 90 QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+.+++.+||+++ .|+++|.+.|.+.+..
T Consensus 156 --~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 156 --GIPFIETSAKTR-----------------QGVEDAFYTLVREIRQ 183 (190)
T ss_dssp --TCCEEECCTTTC-----------------TTHHHHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 467899999998 8999999999877643
No 98
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.65 E-value=9.4e-08 Score=67.99 Aligned_cols=93 Identities=10% Similarity=-0.005 Sum_probs=57.6
Q ss_pred HhhhccEEEEEEeCCCCCCCCc-HHHHHHH---hCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 21 VVEAADVILEVVDARDPMGTRC-KVAEDLV---VGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~-~~i~~~l---~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
.+..+|++++|+|++++.+-.+ ..+.+.+ ... .+.|+++|.||+|+.+...+.... +....+...+. +.+
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~-~~~~~~~~~~~---~~~ 144 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-ARARALXADMK---RCS 144 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH-HHHHHHHHHHS---SEE
T ss_pred HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH-HHHHHHHHhhc---CCe
Confidence 4567999999999987643211 1111122 211 368999999999994211011111 22233333322 467
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+||+++ .|++++.+.|.+.+
T Consensus 145 ~~~~Sa~~~-----------------~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 145 YYETXATYG-----------------LNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEEBTTTT-----------------BTHHHHHHHHHHHH
T ss_pred EEEEecccc-----------------CCHHHHHHHHHHHH
Confidence 899999998 99999999887655
No 99
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.65 E-value=8e-08 Score=69.46 Aligned_cols=94 Identities=6% Similarity=-0.092 Sum_probs=59.9
Q ss_pred HhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 21 VVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
.+..+|++++|+|++++.+-.+ ..+...+... .+.|+++|.||+|+.....+.... +....+...+. ..+.+
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~-~~~~~~~~~~~---~~~~~ 157 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDD-SRARKLSTDLK---RCTYY 157 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCH-HHHHHHHHHTT---TCEEE
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCH-HHHHHHHHHcC---CCeEE
Confidence 4567999999999987643222 2333334331 257999999999995321111111 22233333322 36789
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+||+++ .|+++|.+.|.+.+.
T Consensus 158 e~Sa~~~-----------------~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 158 ETCATYG-----------------LNVERVFQDVAQKVV 179 (184)
T ss_dssp EEBTTTT-----------------BTHHHHHHHHHHHHH
T ss_pred EecCCCC-----------------CCHHHHHHHHHHHHH
Confidence 9999999 999999999877653
No 100
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.65 E-value=5.9e-09 Score=76.22 Aligned_cols=95 Identities=9% Similarity=-0.113 Sum_probs=61.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... .....+... .+.+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~----~~~~ 162 (201)
T 3oes_A 90 YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPER--EVQA-VEGKKLAES----WGAT 162 (201)
T ss_dssp GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGC--CSCH-HHHHHHHHH----HTCE
T ss_pred HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccc--ccCH-HHHHHHHHH----hCCe
Confidence 467789999999999986532111 1222333321 368999999999997541 1111 112223222 2467
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
++.+||+++ .|++++.+.|.+.+...
T Consensus 163 ~~~~Sa~~~-----------------~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 163 FMESSAREN-----------------QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp EEECCTTCH-----------------HHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCC-----------------CCHHHHHHHHHHHHHhh
Confidence 899999998 89999999998877543
No 101
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.65 E-value=4.9e-08 Score=69.25 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=63.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHh---CC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVV---GT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~---~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
+..++...+..+|++++|+|++++.+... ..+...+. .. .+.|+++|+||+|+.+.. ... +....+...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~---~~~-~~~~~~~~~ 144 (177)
T 1wms_A 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ---VST-EEAQAWCRD 144 (177)
T ss_dssp GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS---SCH-HHHHHHHHH
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc---cCH-HHHHHHHHh
Confidence 34455677889999999999987643211 11222221 10 357999999999997431 011 222333332
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
. ...+++.+||+++ .|++++.+.|.+.+..
T Consensus 145 ~---~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 145 N---GDYPYFETSAKDA-----------------TNVAAAFEEAVRRVLA 174 (177)
T ss_dssp T---TCCCEEECCTTTC-----------------TTHHHHHHHHHHHHHT
T ss_pred c---CCceEEEEeCCCC-----------------CCHHHHHHHHHHHHHh
Confidence 1 3567899999999 9999999998876643
No 102
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.65 E-value=1.1e-10 Score=93.47 Aligned_cols=111 Identities=13% Similarity=-0.001 Sum_probs=63.9
Q ss_pred ccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc-CCCCceeEEeecC
Q psy8220 25 ADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI-QSIYSSPRFSSRS 102 (161)
Q Consensus 25 aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iSa~~ 102 (161)
+|.+-.++|+..++++.++.+.+++... ..++.++++||+|++++ .....|..++.. ..+......++..
T Consensus 58 ~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (357)
T 2e87_A 58 RDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIR--------IIRELEERYVERIRYSNDPNEIAELR 129 (357)
T ss_dssp HHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 4444556677766666666665544211 35888899999999876 555678777652 1122222222222
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhH-------------hhc-CCC-CCceEEEEEeecCCCcccccC
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNY-------------TRN-KDI-KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~-------------~~~-~~~-~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+ .+.+.+.+.+.+. ... ... ....+|+++|.||||||||+.
T Consensus 130 ~-----------------~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin 185 (357)
T 2e87_A 130 R-----------------QFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLK 185 (357)
T ss_dssp H-----------------HHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHH
T ss_pred H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHH
Confidence 2 3333333332221 111 111 356899999999999999974
No 103
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.64 E-value=8.1e-08 Score=77.47 Aligned_cols=104 Identities=7% Similarity=0.038 Sum_probs=67.6
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcE-EEEee-cCCCCCcccccccHHHHHHH
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKL-VIVIN-KAGKPSTKIQSGSMAQIFQT 82 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~-ilVlN-K~Dl~~~~~~~~~~~~~~~~ 82 (161)
.|.|.. |...+ ...+..+|++|+|+| +.+...+..+....+.. .+.|. |+|+| |+|+ +.. ...+..+.
T Consensus 67 tPGh~~--f~~~~-~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i~~~ivvvNNK~Dl-~~~----~~~~~~~~ 136 (370)
T 2elf_A 67 AHSYPK--TLKSL-ITALNISDIAVLCIP-PQGLDAHTGECIIALDL-LGFKHGIIALTRSDST-HMH----AIDELKAK 136 (370)
T ss_dssp CTTTTT--CHHHH-HHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTCCEEEEEECCGGGS-CHH----HHHHHHHH
T ss_pred CCChHH--HHHHH-HHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCCCeEEEEEEeccCC-CHH----HHHHHHHH
Confidence 355543 45566 577899999999999 76655444554444444 46777 99999 9999 541 00111122
Q ss_pred HhhhhccC--CCCceeE--EeecC---CCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 83 WIPYNSIQ--SIYSSPR--FSSRS---QKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 83 ~~~~~~~~--~~~~~i~--iSa~~---~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+.+... ...|+++ +||++ + .|+++|++.|.++++
T Consensus 137 i~~~l~~~~~~~~~ii~~~~SA~~~~~g-----------------~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 137 LKVITSGTVLQDWECISLNTNKSAKNPF-----------------EGVDELKARINEVAE 179 (370)
T ss_dssp HHHHTTTSTTTTCEEEECCCCTTSSSTT-----------------TTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEecccccccCcCC-----------------CCHHHHHHHHHhhcc
Confidence 22233211 1357899 99999 7 899999999987764
No 104
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.64 E-value=1.5e-08 Score=74.23 Aligned_cols=94 Identities=15% Similarity=0.010 Sum_probs=60.6
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
++...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. ... +....+...+ +.
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~---~~~-~~~~~~~~~~----~~ 156 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV---VTA-DQGEALAKEL----GI 156 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC---SCH-HHHHHHHHHH----TC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc---cCH-HHHHHHHHHc----CC
Confidence 34567789999999999987532111 1222222211 368999999999995331 011 2223332222 46
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+++.+||+++ .|+++|.+.|.+.+.
T Consensus 157 ~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 157 PFIESSAKND-----------------DNVNEIFFTLAKLIQ 181 (213)
T ss_dssp CEEECBTTTT-----------------BSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 7899999998 899999999877654
No 105
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.64 E-value=2.1e-08 Score=73.32 Aligned_cols=95 Identities=14% Similarity=0.043 Sum_probs=61.3
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
++...+..+|++|+|+|++++.+... ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+.
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~~~ 145 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR--VVEY-DVAKEFADA----NKM 145 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC--CSCH-HHHHHHHHH----TTC
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--ccCH-HHHHHHHHH----cCC
Confidence 34567889999999999987643211 1122222210 368999999999997641 1111 112222222 356
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+++.+||+++ .|+++|.+.|.+.+.
T Consensus 146 ~~~~~Sa~~g-----------------~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 146 PFLETSALDS-----------------TNVEDAFLTMARQIK 170 (206)
T ss_dssp CEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 8899999998 899999999887654
No 106
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.64 E-value=3e-08 Score=69.81 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=59.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
...+..+|++++|+|++++.+- ....+....... .+.|+++|.||+|+.+.. .... +....+... .+.+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~~~~ 142 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR--EVSL-EEGRHLAGT----LSCK 142 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGC--CSCH-HHHHHHHHH----TTCE
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcc--cCCH-HHHHHHHHH----cCCc
Confidence 3456789999999999875321 112222222211 268999999999986431 1111 222222222 3567
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++.+||+++ .|++++.+.|.+.+.
T Consensus 143 ~~~~Sa~~~-----------------~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 143 HIETSAALH-----------------HNTRELFEGAVRQIR 166 (169)
T ss_dssp EEECBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred EEEecCccC-----------------CCHHHHHHHHHHHHH
Confidence 899999999 999999999887654
No 107
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.63 E-value=6.9e-09 Score=73.16 Aligned_cols=98 Identities=17% Similarity=0.022 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+...
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 140 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER--HVSI-QEAESYAES---- 140 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC--CSCH-HHHHHHHHH----
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc--ccCH-HHHHHHHHH----
Confidence 34444567789999999999987532111 1122222210 368999999999996531 1111 222333222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+.+||+++ .|+++|.+.|.+.+.
T Consensus 141 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 141 VGAKHYHTSAKQN-----------------KGIEELFLDLCKRMI 168 (170)
T ss_dssp TTCEEEEEBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred cCCeEEEecCCCC-----------------CCHHHHHHHHHHHHh
Confidence 2567899999999 999999999987654
No 108
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.63 E-value=2.1e-07 Score=74.36 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=59.4
Q ss_pred HHhhhccEEEEEEeCCCCCCCC-c--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 20 SVVEAADVILEVVDARDPMGTR-C--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~-~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
.....+|.+|+|+|++.+.+-. . ..+...+... .++|+++|+||+|+.+. ..+......+. ..+.++
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~--------~~~~~~~~~~~-~~~~~~ 312 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE--------ENIKRLEKFVK-EKGLNP 312 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH--------HHHHHHHHHHH-HTTCCC
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh--------HHHHHHHHHHH-hcCCCe
Confidence 3345699999999987654211 1 2233333221 27999999999999875 22222222222 135678
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+||+++ .|+++|.+.|.+.+.
T Consensus 313 ~~iSA~~g-----------------~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 313 IKISALKG-----------------TGIDLVKEEIIKTLR 335 (357)
T ss_dssp EECBTTTT-----------------BTHHHHHHHHHHHHH
T ss_pred EEEeCCCC-----------------cCHHHHHHHHHHHHH
Confidence 99999999 999999999987664
No 109
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.62 E-value=1e-08 Score=72.78 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=60.4
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
++...+..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+.
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~~~ 151 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--QVST-EEGERKAKE----LNV 151 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC--CSCH-HHHHHHHHH----HTC
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC--cCCH-HHHHHHHHH----cCC
Confidence 33566789999999999987532111 1222222211 368999999999986531 1011 112222222 246
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+++.+||+++ .|+++|.+.|.+.++
T Consensus 152 ~~~~~Sa~~~-----------------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 152 MFIETSAKAG-----------------YNVKQLFRRVAAALP 176 (179)
T ss_dssp EEEEEBTTTT-----------------BSHHHHHHHHHHTCC
T ss_pred eEEEEeCCCC-----------------CCHHHHHHHHHHHHh
Confidence 7899999998 999999999887654
No 110
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.62 E-value=1.3e-08 Score=72.93 Aligned_cols=98 Identities=10% Similarity=-0.058 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
+..++...+..+|++++|+|++++..... ..+...+.. ..+.|+++|+||+|+.+.. .... .....+...
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 144 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR--EVTF-LEASRFAQE---- 144 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--CSCH-HHHHHHHHH----
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--ccCH-HHHHHHHHH----
Confidence 34555778899999999999987543211 122222221 1478999999999996431 1111 112222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|++++.+.|.+.+.
T Consensus 145 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 145 NELMFLETSALTG-----------------ENVEEAFVQCARKIL 172 (186)
T ss_dssp TTCEEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred cCCEEEEecCCCC-----------------CCHHHHHHHHHHHHH
Confidence 3567899999998 899999999877654
No 111
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.62 E-value=1.7e-08 Score=71.69 Aligned_cols=97 Identities=12% Similarity=-0.009 Sum_probs=61.2
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC----CCCc-EEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT----PGKK-LVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~----~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
++...+..+|++++|+|++++.+-.+ ..+...+... .+.| +++|.||+|+.+.. .... +....+...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~--~~~~-~~~~~~~~~---- 144 (178)
T 2hxs_A 72 MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR--TIKP-EKHLRFCQE---- 144 (178)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC--SSCH-HHHHHHHHH----
T ss_pred hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc--ccCH-HHHHHHHHH----
Confidence 33566789999999999987643211 1222222210 1456 78999999996531 0011 222333222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
.+.+++.+||+++ .|+++|.+.|.+.+...
T Consensus 145 ~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 145 NGFSSHFVSAKTG-----------------DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HTCEEEEECTTTC-----------------TTHHHHHHHHHHHHTTC
T ss_pred cCCcEEEEeCCCC-----------------CCHHHHHHHHHHHHHhh
Confidence 2467899999999 99999999998876543
No 112
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.62 E-value=5.7e-08 Score=70.77 Aligned_cols=99 Identities=15% Similarity=0.025 Sum_probs=61.1
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcc----cccccHHHHHHHHhhhh
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTK----IQSGSMAQIFQTWIPYN 87 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~----~~~~~~~~~~~~~~~~~ 87 (161)
..++...+..+|++|+|+|++++....+ ..+...+... .+.|+++|+||+|+.+.. .+... .+....+...
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~-~~~~~~~~~~- 168 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVP-GHFGEKLAMT- 168 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCC-HHHHHHHHHH-
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccC-HHHHHHHHHH-
Confidence 3444667889999999999987643221 2222223211 368999999999986310 00000 0112222222
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|++++.+.|.+.+.
T Consensus 169 ---~~~~~~~~SA~~g-----------------~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 169 ---YGALFCETSAKDG-----------------SNIVEAVLHLAREVK 196 (199)
T ss_dssp ---HTCEEEECCTTTC-----------------TTHHHHHHHHHHHHT
T ss_pred ---cCCeEEEeeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2567899999999 999999999887664
No 113
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.61 E-value=1.7e-08 Score=73.08 Aligned_cols=94 Identities=12% Similarity=-0.046 Sum_probs=60.5
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
+...+..+|++++|+|++++....+ ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+.+
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~----~~~~ 159 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR--DVKR-EEGEAFARE----HGLI 159 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCH-HHHHHHHHH----HTCE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc--ccCH-HHHHHHHHH----cCCE
Confidence 3567789999999999987542211 1222223211 378999999999996531 1011 222333222 2467
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++.+||+++ .|++++.+.|.+.+.
T Consensus 160 ~~~~Sa~~~-----------------~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 160 FMETSAKTA-----------------CNVEEAFINTAKEIY 183 (191)
T ss_dssp EEEECTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred EEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 899999998 899999999876553
No 114
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.61 E-value=3.4e-08 Score=71.82 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-----CCCcEEEEeecCCCCC-cccccccHHHHHHHHhhh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-----PGKKLVIVINKAGKPS-TKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-----~~k~~ilVlNK~Dl~~-~~~~~~~~~~~~~~~~~~ 86 (161)
+..++...+..+|++|+|+|++++.+-.. ..+...+... .+.|+++|+||+|+.+ .. .... +....+...
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~--~v~~-~~~~~~~~~ 162 (208)
T 2yc2_C 86 YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH--QVRL-DMAQDWATT 162 (208)
T ss_dssp HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CCCH-HHHHHHHHH
T ss_pred HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc--cCCH-HHHHHHHHH
Confidence 45566777899999999999987643111 1222223210 2689999999999976 31 0011 222333322
Q ss_pred hccCCCCceeEEeecC-CCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 87 NSIQSIYSSPRFSSRS-QKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~-~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+.+++.+||++ + .|+++|.+.|.+.+
T Consensus 163 ----~~~~~~~~Sa~~~~-----------------~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 163 ----NTLDFFDVSANPPG-----------------KDADAPFLSIATTF 190 (208)
T ss_dssp ----TTCEEEECCC------------------------CHHHHHHHHHH
T ss_pred ----cCCEEEEeccCCCC-----------------cCHHHHHHHHHHHH
Confidence 246789999999 8 88999988887655
No 115
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.61 E-value=2.4e-08 Score=71.19 Aligned_cols=98 Identities=14% Similarity=-0.042 Sum_probs=61.0
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccc--------cccHHHHHHHHh
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQ--------SGSMAQIFQTWI 84 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~--------~~~~~~~~~~~~ 84 (161)
.++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|+||+|+.+.... .... +....+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~-~~~~~~~ 149 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITT-VQGEELK 149 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCH-HHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCH-HHHHHHH
Confidence 344567789999999999987543211 1233333321 36899999999998764100 0000 1112222
Q ss_pred hhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 85 PYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 85 ~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
..+. ..+.+.+||+++ .|+++|.+.|.+.+
T Consensus 150 ~~~~---~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 150 KLIG---APAYIECSSKSQ-----------------ENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHT---CSEEEECCTTTC-----------------TTHHHHHHHHHHHH
T ss_pred HHcC---CCEEEEEECCCC-----------------CCHHHHHHHHHHHH
Confidence 2221 237889999999 99999999987754
No 116
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.61 E-value=6.7e-08 Score=78.46 Aligned_cols=119 Identities=13% Similarity=0.019 Sum_probs=68.6
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
|.|. .|...+ ...+..+|++|+|+|++++...+..+....+.. .+.| +++|+||+|+.+.........+.+..+.
T Consensus 74 pG~~--~f~~~~-~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 74 PGHA--DYVKNM-ITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp SSHH--HHHHHH-HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred CChH--HHHHHH-HhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 4543 345555 678899999999999998765554444444444 5788 6899999999853100000001122222
Q ss_pred hhhcc-CCCCceeEEeecCCCCcchhhhhhhhccccccC-HHHHHHHHHhHhhc
Q psy8220 85 PYNSI-QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVG-AELLMLLLGNYTRN 136 (161)
Q Consensus 85 ~~~~~-~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g-~~~L~~~l~~~~~~ 136 (161)
..+.- ....|++++||+++.+.. +..-..| +.+|++.|.++++.
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~--------~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQR--------DPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTC--------CTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHcCCCcccCcEEEeehhhccccc--------CCCccCCcHHHHHHHHHHhCCC
Confidence 22210 013578999999861100 0000024 88999999887753
No 117
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.61 E-value=1.4e-08 Score=74.75 Aligned_cols=98 Identities=17% Similarity=0.045 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
++.++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+.. .... +....+...
T Consensus 88 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~--~v~~-~~~~~~~~~---- 160 (201)
T 2ew1_A 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR--EVSQ-QRAEEFSEA---- 160 (201)
T ss_dssp GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--SSCH-HHHHHHHHH----
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--ccCH-HHHHHHHHH----
Confidence 45555778899999999999987542111 1222222211 368999999999996431 1011 222222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 161 ~~~~~~~~Sa~~g-----------------~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 161 QDMYYLETSAKES-----------------DNVEKLFLDLACRLI 188 (201)
T ss_dssp HTCCEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 2467899999999 899999999877654
No 118
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.61 E-value=3.1e-08 Score=70.02 Aligned_cols=93 Identities=14% Similarity=-0.038 Sum_probs=59.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
...+..+|.+++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+.. .... +....+... .+.+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~--~v~~-~~~~~~~~~----~~~~ 144 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCR--EVSV-EEGRACAVV----FDCK 144 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTC--CSCH-HHHHHHHHH----HTSE
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccc--ccCH-HHHHHHHHH----cCCe
Confidence 456678999999999987532111 1222223221 378999999999997541 1111 112222222 2467
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++.+||+++ .|+++|.+.|.+.+.
T Consensus 145 ~~~~Sa~~g-----------------~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 145 FIETSATLQ-----------------HNVAELFEGVVRQLR 168 (175)
T ss_dssp EEECBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred EEEEecCCC-----------------CCHHHHHHHHHHHHH
Confidence 899999999 999999999987664
No 119
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.61 E-value=3.8e-08 Score=71.74 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=59.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC------CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT------PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
...+..+|++|+|+|++++..... ..+...+... .+.|+++|+||+|+.+.. ... +....+.... .
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~-~~~~~~~~~~---~ 147 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ---VAT-KRAQAWCYSK---N 147 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC---SCH-HHHHHHHHHT---T
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc---cCH-HHHHHHHHhc---C
Confidence 456789999999999987643111 1111111110 257999999999997431 011 2223332211 3
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+++.+||+++ .|+++|.+.|.+.+.
T Consensus 148 ~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 148 NIPYFETSAKEA-----------------INVEQAFQTIARNAL 174 (207)
T ss_dssp SCCEEECBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 567899999999 999999999877653
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.60 E-value=7.5e-09 Score=79.49 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=58.8
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
..+|++++|+|++... ....+...+.+ .+.|+++|+||+|+.... .... + ...+... .+.|++++||++
T Consensus 82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~-~~~pvilv~NK~Dl~~~~--~i~~-~-~~~l~~~----lg~~vi~~SA~~ 150 (258)
T 3a1s_A 82 GDADLVILVADSVNPE--QSLYLLLEILE-MEKKVILAMTAIDEAKKT--GMKI-D-RYELQKH----LGIPVVFTSSVT 150 (258)
T ss_dssp SCCSEEEEEEETTSCH--HHHHHHHHHHT-TTCCEEEEEECHHHHHHT--TCCB-C-HHHHHHH----HCSCEEECCTTT
T ss_pred cCCCEEEEEeCCCchh--hHHHHHHHHHh-cCCCEEEEEECcCCCCcc--chHH-H-HHHHHHH----cCCCEEEEEeeC
Confidence 6899999999998742 22334444555 589999999999986431 0000 0 1222222 257899999999
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+ .|+++|.+.|.+.+.
T Consensus 151 g-----------------~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 151 G-----------------EGLEELKEKIVEYAQ 166 (258)
T ss_dssp C-----------------TTHHHHHHHHHHHHH
T ss_pred C-----------------cCHHHHHHHHHHHhh
Confidence 9 899999999888765
No 121
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.60 E-value=1.3e-07 Score=68.70 Aligned_cols=95 Identities=9% Similarity=0.040 Sum_probs=60.6
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC-C--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG-T--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~-~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
.++...+..+|.+++|+|++++..-.. ..+...+.. . .+.|+++|+||+|+.+.. .... +....+... .
T Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~ 149 (206)
T 2bov_A 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--QVSV-EEAKNRAEQ----W 149 (206)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC--CSCH-HHHHHHHHH----H
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc--cccH-HHHHHHHHH----h
Confidence 344567789999999999987532111 111122211 0 378999999999997531 1111 222333332 2
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+.+++.+||+++ .|+++|.+.|.+.+
T Consensus 150 ~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~i 175 (206)
T 2bov_A 150 NVNYVETSAKTR-----------------ANVDKVFFDLMREI 175 (206)
T ss_dssp TCEEEEECTTTC-----------------TTHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCC-----------------CCHHHHHHHHHHHH
Confidence 467899999999 89999999987655
No 122
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.59 E-value=3.8e-08 Score=72.75 Aligned_cols=101 Identities=12% Similarity=-0.046 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccc----------cccHHHHH
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQ----------SGSMAQIF 80 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~----------~~~~~~~~ 80 (161)
+..++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+.... .... +..
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~ 173 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTY-HRG 173 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCH-HHH
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccH-HHH
Confidence 34454567889999999999987532111 1222223221 36899999999999765100 0000 011
Q ss_pred HHHhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 81 QTWIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 81 ~~~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..+... .+. +++.+||+++ .|+++|.+.|.+.+..
T Consensus 174 ~~~~~~----~~~~~~~~~SA~~g-----------------~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 174 QEMARS----VGAVAYLECSARLH-----------------DNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHH----TTCSEEEECBTTTT-----------------BSHHHHHHHHHHHHHH
T ss_pred HHHHHh----cCCCEEEEecCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 122222 234 7899999998 9999999999876643
No 123
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.59 E-value=2.2e-08 Score=73.52 Aligned_cols=97 Identities=12% Similarity=-0.059 Sum_probs=60.2
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhCC-CCCcEEEEeecCCCCCccccc----------ccHHHHHHH
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRCK--VAEDLVVGT-PGKKLVIVINKAGKPSTKIQS----------GSMAQIFQT 82 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~----------~~~~~~~~~ 82 (161)
.++...+..+|++++|+|++++.+..+. .+...+... .+.|+++|+||+|+.+..... ... +....
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~ 171 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLA 171 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH-HHHHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccH-HHHHH
Confidence 3445678899999999999876432221 233333321 379999999999997651000 000 11111
Q ss_pred HhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 83 WIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 83 ~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+...+ ...+++.+||+++ .|+++|.+.|.+.
T Consensus 172 ~~~~~---~~~~~~~~SA~~g-----------------~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 172 MAKEI---GAVKYLECSALTQ-----------------RGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHT---TCSEEEECCTTTC-----------------TTHHHHHHHHHHT
T ss_pred HHHhc---CCcEEEEeeCCCC-----------------CCHHHHHHHHHHH
Confidence 22221 1345889999999 9999999988654
No 124
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.59 E-value=9.7e-09 Score=72.86 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=55.6
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
..+|++++|+|++... ....+...+.+ .+.|+++|.||+|+.... ... .....+...+ +.+++.+||++
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~~~--~~~~~~~~~~----~~~~~~~SA~~ 148 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLME-MGANLLLALNKMDLAKSL--GIE--IDVDKLEKIL----GVKVVPLSAAK 148 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHHH-TTCCEEEEEECHHHHHHT--TCC--CCHHHHHHHH----TSCEEECBGGG
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHHh-cCCCEEEEEEchHhcccc--Chh--hHHHHHHHHh----CCCEEEEEcCC
Confidence 4799999999987631 12223333444 579999999999985321 000 0012222222 46789999999
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+ .|+++|.+.|.+.+
T Consensus 149 ~-----------------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 149 K-----------------MGIEELKKAISIAV 163 (165)
T ss_dssp T-----------------BSHHHHHHHHHHHT
T ss_pred C-----------------CCHHHHHHHHHHHh
Confidence 9 99999999987655
No 125
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=7.2e-08 Score=69.71 Aligned_cols=97 Identities=9% Similarity=-0.044 Sum_probs=60.4
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccc----------ccccHHHHHHHH
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKI----------QSGSMAQIFQTW 83 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~----------~~~~~~~~~~~~ 83 (161)
++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+... +.... +....+
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~ 160 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICV-EQGQKL 160 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCH-HHHHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCH-HHHHHH
Confidence 33567789999999999987632111 1233333321 3789999999999976410 00000 112222
Q ss_pred hhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 84 IPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 84 ~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
...+. ..+++.+||+++ .|+++|.+.|.+.+
T Consensus 161 ~~~~~---~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~i 191 (194)
T 2atx_A 161 AKEIG---ACCYVECSALTQ-----------------KGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHT---CSCEEECCTTTC-----------------TTHHHHHHHHHHHH
T ss_pred HHHcC---CcEEEEeeCCCC-----------------CCHHHHHHHHHHHH
Confidence 22221 237889999998 99999999987654
No 126
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=4.1e-08 Score=71.32 Aligned_cols=95 Identities=13% Similarity=-0.005 Sum_probs=60.4
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHh---CCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVV---GTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~---~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
++...+..+|++++|+|++++.+-.+ ..+...+. ...+.|+++|.||+|+.+.. .... +....+... .+
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~~-~~~~~~~~~----~~ 163 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR--QVST-EEGEKLATE----LA 163 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC--CSCH-HHHHHHHHH----HT
T ss_pred chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccc--ccCH-HHHHHHHHH----hC
Confidence 33567789999999999987542111 11122221 11478999999999996531 1111 112222222 24
Q ss_pred CceeEEeecCCCCcchhhhhhhhcccccc-CHHHHHHHHHhHhh
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCV-GAELLMLLLGNYTR 135 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~-g~~~L~~~l~~~~~ 135 (161)
.+++.+||+++ . |++++.+.|.+.+.
T Consensus 164 ~~~~~~Sa~~g-----------------~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 164 CAFYECSACTG-----------------EGNITEIFYELCREVR 190 (196)
T ss_dssp SEEEECCTTTC-----------------TTCHHHHHHHHHHHHH
T ss_pred CeEEEECCCcC-----------------CcCHHHHHHHHHHHHH
Confidence 67899999998 8 99999999877653
No 127
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.58 E-value=6.5e-08 Score=67.82 Aligned_cols=94 Identities=12% Similarity=0.003 Sum_probs=60.5
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
+...+..+|++++|+|++++.+... ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+.++
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~--~~~~-~~~~~~~~~----~~~~~ 143 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS--CIKN-EEAEGLAKR----LKLRF 143 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC--SSCH-HHHHHHHHH----HTCEE
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCccc--ccCH-HHHHHHHHH----cCCeE
Confidence 3566789999999999987542111 1122222211 368999999999987531 0011 222333332 24678
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+||+++ .|+++|.+.|.+.+.
T Consensus 144 ~~~Sa~~~-----------------~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 144 YRTSVKED-----------------LNVSEVFKYLAEKHL 166 (168)
T ss_dssp EECBTTTT-----------------BSSHHHHHHHHHHHH
T ss_pred EEEecCCC-----------------CCHHHHHHHHHHHHh
Confidence 99999998 899999999877653
No 128
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.56 E-value=1.8e-08 Score=73.76 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=61.7
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC-C-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG-T-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~-~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
..++...+..+|++|+|+|++++..... ..+...+.. . .+.|+++|+||+|+.+.. .... .....+... .
T Consensus 88 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~----~ 160 (200)
T 2o52_A 88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER--EVTF-LEASRFAQE----N 160 (200)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGC--CSCH-HHHHHHHHH----T
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc--ccCH-HHHHHHHHH----c
Confidence 3344567889999999999987643211 122222221 0 478999999999986431 1111 112222222 3
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+++.+||+++ .|++++.+.|.+.+.
T Consensus 161 ~~~~~~~SA~~g-----------------~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 161 ELMFLETSALTG-----------------ENVEEAFLKCARTIL 187 (200)
T ss_dssp TCEEEEECTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 567899999999 899999999876653
No 129
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.56 E-value=4.7e-08 Score=70.53 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=57.5
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
.++...+..+|++|+|+|++++.+... ..+...+.. ..+.|+++|+||+|+.+.. .... +....+... .
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~----~ 157 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI--QVPT-DLAQKFADT----H 157 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGC--CSCH-HHHHHHHHH----T
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--eeCH-HHHHHHHHH----c
Confidence 455677889999999999987532111 112222211 1478999999999996531 0010 112222222 3
Q ss_pred CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 92 IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 92 ~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+.+++.+||+++. ...|++++.+.|.+.+
T Consensus 158 ~~~~~~~Sa~~~~--------------~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 158 SMPLFETSAKNPN--------------DNDHVEAIFMTLAHKL 186 (189)
T ss_dssp TCCEEECCSSSGG--------------GGSCHHHHHHHHC---
T ss_pred CCEEEEEeCCcCC--------------cccCHHHHHHHHHHHH
Confidence 5678999998761 1157888888876544
No 130
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.55 E-value=7.1e-08 Score=71.42 Aligned_cols=99 Identities=10% Similarity=-0.032 Sum_probs=63.4
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcc----------cccccHHHHHHH
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTK----------IQSGSMAQIFQT 82 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~----------~~~~~~~~~~~~ 82 (161)
.++...+..+|++|+|+|++++.+-.+ ..+...+... .+.|+++|.||+|+.+.. .+.... +....
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~ 168 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISY-EQGCA 168 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCH-HHHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCH-HHHHH
Confidence 344567889999999999987643221 2233333321 378999999999996520 000011 22233
Q ss_pred HhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccC-HHHHHHHHHhHhhc
Q psy8220 83 WIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVG-AELLMLLLGNYTRN 136 (161)
Q Consensus 83 ~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g-~~~L~~~l~~~~~~ 136 (161)
+...+ +. +.+.+||+++ .| +++|.+.|.+.+..
T Consensus 169 ~~~~~----~~~~~~e~SA~~g-----------------~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 169 IAKQL----GAEIYLEGSAFTS-----------------EKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHH----TCSEEEECCTTTC-----------------HHHHHHHHHHHHHHHHC
T ss_pred HHHHc----CCCEEEEeccCCC-----------------cccHHHHHHHHHHHHhc
Confidence 33332 45 7889999998 88 99999999877654
No 131
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.54 E-value=1.2e-07 Score=82.80 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=52.5
Q ss_pred hhccEEEEEEeCCCCCCCCcH-HHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc-CCCCceeEEee
Q psy8220 23 EAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI-QSIYSSPRFSS 100 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~-~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iSa 100 (161)
+++|++|+|+|++.++...+. .+.+.+.. .++|+|+|+||+|++++.. .. ..+.. ...+.. ....+++++||
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~-~g~pvIlVlNKiDlv~~~~---~~-~~il~-~~~~~l~lg~~~VV~iSA 259 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVDP-QGQRTIGVITKLDLMDEGT---DA-RDVLE-NKLLPLRRGYIGVVNRSQ 259 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHCT-TCSSEEEEEECTTSSCTTC---CS-HHHHT-TCSSCCSSCEEECCCCCC
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHHh-cCCCEEEEEeCcccCCcch---hh-HHHHH-HHhhhhhccCCceEEecc
Confidence 689999999999998877776 67777765 6899999999999986520 00 11111 111110 01246889999
Q ss_pred cCCCCc
Q psy8220 101 RSQKDA 106 (161)
Q Consensus 101 ~~~~~~ 106 (161)
+++.+.
T Consensus 260 ~~G~Gv 265 (772)
T 3zvr_A 260 KDIDGK 265 (772)
T ss_dssp EESSSS
T ss_pred cccccc
Confidence 998443
No 132
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.54 E-value=3.7e-08 Score=70.31 Aligned_cols=99 Identities=12% Similarity=-0.088 Sum_probs=62.1
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhCC-CCCcEEEEeecCCCCCccc----------ccccHHHHHHH
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRCK--VAEDLVVGT-PGKKLVIVINKAGKPSTKI----------QSGSMAQIFQT 82 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~----------~~~~~~~~~~~ 82 (161)
.++...+..+|++++|+|++++.+-.+. .+...+... .+.|+++|+||+|+.+... +.... +....
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH-HHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCH-HHHHH
Confidence 3435577899999999999875332111 233333321 3789999999999976410 00000 01111
Q ss_pred HhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 83 WIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 83 ~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+... .+. +++.+||+++ .|+++|.+.|.+.+..
T Consensus 147 ~~~~----~~~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 147 MAKE----IGAVKYLECSALTQ-----------------RGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHH----TTCSEEEECCTTTC-----------------TTHHHHHHHHHHHHSC
T ss_pred HHHh----cCCcEEEEecCCCc-----------------cCHHHHHHHHHHHHhc
Confidence 1111 233 7899999999 9999999999887754
No 133
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.53 E-value=9.3e-09 Score=75.04 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=52.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
...+..+|++++|+|++++..-.. ..+...+... .+.|+++|+||+|+.+...... +....+... .+.++
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~---~~~~~~~~~----~~~~~ 172 (199)
T 3l0i_B 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY---TTAKEFADS----LGIPF 172 (199)
T ss_dssp CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS---CC-CHHHHT----TTCCB
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH---HHHHHHHHH----cCCeE
Confidence 446788999999999987643111 2233334332 3689999999999975410000 001111111 35678
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+.+||+++ .|+++|.+.|.+.+..
T Consensus 173 ~~vSA~~g-----------------~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 173 LETSAKNA-----------------TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCCCC--------------------HHHHHHHHHHTTTTTT
T ss_pred EEEECCCC-----------------CCHHHHHHHHHHHHHH
Confidence 89999998 9999999998776543
No 134
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.52 E-value=2.2e-07 Score=76.25 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=54.3
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCC-CcEEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
|.|.. |...+ ...+..+|++|+|+|++++...+..+....+.. .+ +|+++|+||+|+.+.. ..........+.
T Consensus 112 pGh~~--f~~~~-~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~~~iIvviNK~Dl~~~~--~~~~~~i~~~~~ 185 (434)
T 1zun_B 112 PGHEQ--YTRNM-ATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGIKHIVVAINKMDLNGFD--ERVFESIKADYL 185 (434)
T ss_dssp CCSGG--GHHHH-HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEEECTTTTTSC--HHHHHHHHHHHH
T ss_pred CChHH--HHHHH-HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEEcCcCCccc--HHHHHHHHHHHH
Confidence 55543 33344 567899999999999998865444444443433 34 4699999999998631 000111112222
Q ss_pred hhhccCC----CCceeEEeecCC
Q psy8220 85 PYNSIQS----IYSSPRFSSRSQ 103 (161)
Q Consensus 85 ~~~~~~~----~~~~i~iSa~~~ 103 (161)
..+.... ..+++++||+++
T Consensus 186 ~~~~~~g~~~~~~~~i~vSA~~g 208 (434)
T 1zun_B 186 KFAEGIAFKPTTMAFVPMSALKG 208 (434)
T ss_dssp HHHHTTTCCCSEEEEEECCTTTC
T ss_pred HHHHHhCCCccCceEEEEeccCC
Confidence 2222111 246889999998
No 135
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.52 E-value=2e-07 Score=79.54 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=38.7
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCC
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPS 68 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~ 68 (161)
..+..+|++|+|+|++++...+..+...++.. .+.|+++|+||+|+.+
T Consensus 89 r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 89 RGGALADLAILIVDINEGFKPQTQEALNILRM-YRTPFVVAANKIDRIH 136 (594)
T ss_dssp SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCCEEEEEECGGGST
T ss_pred HHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCeEEEEeccccccc
Confidence 45678999999999999876555555666655 6899999999999974
No 136
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.92 E-value=1.1e-08 Score=74.82 Aligned_cols=102 Identities=12% Similarity=-0.019 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhCC-CCCcEEEEeecCCCCCcccccccHH------HHHHHHh
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCK--VAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMA------QIFQTWI 84 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~------~~~~~~~ 84 (161)
+..++...+..+|++++|+|++++..-.+. .+...+... .+.|+++|+||+|+.+......... .......
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
Confidence 334445677899999999999876543221 233333321 2689999999999975410000000 0000111
Q ss_pred hhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 85 PYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 85 ~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
.+....+. +++.+||+++ .|+++|.+.|.+.
T Consensus 171 -~~~~~~~~~~~~~vSA~~g-----------------~gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 -AMAKEIGAVKYLECSALTQ-----------------RGLKTVFDEAIRA 202 (204)
Confidence 11111233 6788999998 8999998887653
No 137
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.52 E-value=8.6e-08 Score=69.68 Aligned_cols=97 Identities=8% Similarity=-0.085 Sum_probs=60.3
Q ss_pred HHHHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhCC-CCCcEEEEeecCCCCCccc----------ccccHHHHHHHHh
Q psy8220 18 ERSVVEAADVILEVVDARDPMGTRCK--VAEDLVVGT-PGKKLVIVINKAGKPSTKI----------QSGSMAQIFQTWI 84 (161)
Q Consensus 18 ~~~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~----------~~~~~~~~~~~~~ 84 (161)
+...+..+|++++|+|++++.+-.+. .+...+... .+.|+++|.||+|+.+... +.... +....+.
T Consensus 85 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~ 163 (201)
T 2q3h_A 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPE-EAAKLLA 163 (201)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCH-HHHHHHH
T ss_pred hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCH-HHHHHHH
Confidence 34567899999999999876432211 233323221 3789999999999975310 00000 1122222
Q ss_pred hhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 85 PYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 85 ~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+. ..+++.+||+++ .|+++|.+.|.+.+.
T Consensus 164 ~~~~---~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 164 EEIK---AASYIECSALTQ-----------------KNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHT---CSEEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred HhcC---CcEEEEEecCCC-----------------CCHHHHHHHHHHHHh
Confidence 2221 237889999999 999999999877653
No 138
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.51 E-value=9.3e-08 Score=69.84 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=60.2
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccc----------cccHHHHHHH
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQ----------SGSMAQIFQT 82 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~----------~~~~~~~~~~ 82 (161)
.++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|+||+|+.+.... .... +....
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~ 166 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRS-EEGRD 166 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCH-HHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCH-HHHHH
Confidence 344557889999999999987532111 2233333321 37999999999999765100 0000 01111
Q ss_pred HhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 83 WIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 83 ~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+... .+. +++.+||+++ .|+++|.+.|.+.+
T Consensus 167 ~~~~----~~~~~~~~~SA~~g-----------------~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 167 MANR----ISAFGYLECSAKTK-----------------EGVREVFEMATRAG 198 (201)
T ss_dssp HHHH----TTCSEEEECCTTTC-----------------TTHHHHHHHHHHHH
T ss_pred HHHh----CCCcEEEEeeCCCC-----------------CCHHHHHHHHHHHH
Confidence 1111 133 6789999999 99999999987754
No 139
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.51 E-value=2e-07 Score=68.03 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=60.4
Q ss_pred HHHhhhccEEEEEEeCCCCCCC--CcHHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGT--RCKVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYS 94 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~--~~~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
...+..+|++|+|+|++++.+- ....+....... .+.|+++|.||+|+.+.. .... +....+... .+.+
T Consensus 91 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~a~~----~~~~ 163 (195)
T 3cbq_A 91 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR--EVSL-EEGRHLAGT----LSCK 163 (195)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTC--CSCH-HHHHHHHHH----TTCE
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccC--CcCH-HHHHHHHHH----hCCE
Confidence 3456789999999999875321 112222222111 368999999999997531 1111 122223222 2467
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.+||+++ .|++++.+.|.+.+..
T Consensus 164 ~~e~Sa~~~-----------------~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 164 HIETSAALH-----------------HNTRELFEGAVRQIRL 188 (195)
T ss_dssp EEEEBTTTT-----------------BSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 899999999 9999999999877654
No 140
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.49 E-value=2.7e-08 Score=76.53 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=58.8
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCC-CcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEee
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSS 100 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 100 (161)
...+|++++|+|++.+. ....+...+.+ .+ .|+++|+||+|+.+.. ... .....+.+. .+.|++++||
T Consensus 79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~--~~~--~~~~~l~~~----lg~~~~~~Sa 147 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM--RNLFLTLELFE-MEVKNIILVLNKFDLLKKK--GAK--IDIKKMRKE----LGVPVIPTNA 147 (271)
T ss_dssp TTCCSEEEEEEEGGGHH--HHHHHHHHHHH-TTCCSEEEEEECHHHHHHH--TCC--CCHHHHHHH----HSSCEEECBG
T ss_pred ccCCcEEEEEecCCcch--hhHHHHHHHHh-cCCCCEEEEEEChhcCccc--ccH--HHHHHHHHH----cCCcEEEEEe
Confidence 47899999999998752 22333333333 45 9999999999986431 000 001222222 2578999999
Q ss_pred cCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 101 RSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
+++ .|+++|.+.|.+.+...
T Consensus 148 ~~g-----------------~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 148 KKG-----------------EGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGT-----------------BTHHHHHHHHHHHHHTC
T ss_pred CCC-----------------CCHHHHHHHHHHHHhcc
Confidence 999 89999999988876543
No 141
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.48 E-value=5.7e-07 Score=72.37 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCcH---HHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhh
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRCK---VAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPY 86 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~---~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (161)
+.++.. .+.+..||++++|+|++++...... .+.+.+... .+.|+|+|+||+|+.+.. ..........+...
T Consensus 246 e~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~l~~~ 322 (364)
T 2qtf_A 246 DAFFVT-LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD--LYKKLDLVEKLSKE 322 (364)
T ss_dssp HHHHHH-HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC--HHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch--HHHHHHHHHHHHHH
Confidence 334445 4678999999999999876411111 122222211 468999999999997651 00000011112222
Q ss_pred hccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 87 NSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 87 ~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+. ....+++++||+++ .|+++|.+.|.+.+..
T Consensus 323 l~-~~~~~~~~~SA~~g-----------------~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 323 LY-SPIFDVIPISALKR-----------------TNLELLRDKIYQLATQ 354 (364)
T ss_dssp HC-SCEEEEEECBTTTT-----------------BSHHHHHHHHHHHHHH
T ss_pred hc-CCCCcEEEEECCCC-----------------cCHHHHHHHHHHHhcc
Confidence 21 01235789999999 9999999999887754
No 142
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.48 E-value=8.9e-08 Score=76.63 Aligned_cols=90 Identities=14% Similarity=-0.006 Sum_probs=55.9
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc------CCCC
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI------QSIY 93 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 93 (161)
..+..+|++|+|+|+...... ..+...+ .+.|.++|+||+|+.+.. ........+...+.. ....
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~---~~~p~ivVlNK~Dl~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~ 258 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQL--QGIKKGV---LELADIVVVNKADGEHHK----EARLAARELSAAIRLIYPREALWRP 258 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTT--TTCCTTS---GGGCSEEEEECCCGGGHH----HHHHHHHHHHHHHHHHSTTCCSCCC
T ss_pred HHHHhCCEEEEEECCCCCccH--HHHHHhH---hhcCCEEEEECCCCcChh----HHHHHHHHHHHHHhhccccccCCCC
Confidence 445899999999997654221 1111111 247999999999987541 000111112222110 0135
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
|++++||+++ .|+++|.+.|.++++
T Consensus 259 ~vi~iSA~~g-----------------~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 259 PVLTMSAVEG-----------------RGLAELWDTVERHRQ 283 (355)
T ss_dssp CEEEEBGGGT-----------------BSHHHHHHHHHHHHH
T ss_pred ceEEEEcCCC-----------------CCHHHHHHHHHHHHH
Confidence 7999999999 899999999988764
No 143
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.48 E-value=2.2e-07 Score=77.19 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCC-------CCcHHHHHHHhCCCC-CcEEEEeecCCCCCcc-cccccH
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMG-------TRCKVAEDLVVGTPG-KKLVIVINKAGKPSTK-IQSGSM 76 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~-------~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~~-~~~~~~ 76 (161)
|.|.. |.... ...+..||++|+|+|++++.. .+..+....+.. .+ +|+|+|+||+|+.+.. .+....
T Consensus 119 PG~~~--f~~~~-~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~i 194 (483)
T 3p26_A 119 PGHRD--FVPNA-IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQRFEEI 194 (483)
T ss_dssp CCCGG--GHHHH-HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTCHHHHHHH
T ss_pred CCcHH--HHHHH-HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccchHHHHHHH
Confidence 55532 34444 678899999999999988632 223333333333 33 6799999999998631 000001
Q ss_pred HHHHHHHhhhhcc-CCCCceeEEeecCC
Q psy8220 77 AQIFQTWIPYNSI-QSIYSSPRFSSRSQ 103 (161)
Q Consensus 77 ~~~~~~~~~~~~~-~~~~~~i~iSa~~~ 103 (161)
.+.+..+...+.. ....+++++||+++
T Consensus 195 ~~~~~~~l~~~g~~~~~~~~i~iSA~~g 222 (483)
T 3p26_A 195 KSKLLPYLVDIGFFEDNINWVPISGFSG 222 (483)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECCSSSC
T ss_pred HHHHHHHHHHcCCCcccceEEEEeeecC
Confidence 1111222221110 01346899999998
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.48 E-value=4.4e-08 Score=71.91 Aligned_cols=99 Identities=11% Similarity=-0.064 Sum_probs=61.1
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccc------cccHHHHHHHHhhhh
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQ------SGSMAQIFQTWIPYN 87 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~------~~~~~~~~~~~~~~~ 87 (161)
++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+.... ... .+....+...+
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~-~~~~~~~~~~~ 151 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT-STQGEELRKQI 151 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCC-HHHHHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCC-HHHHHHHHHHc
Confidence 33457889999999999987643211 1233333321 37899999999998654100 000 01122222222
Q ss_pred ccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 88 SIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 88 ~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
. ..+++.+||+++ .|+++|.+.|.+.+..
T Consensus 152 ~---~~~~~~~Sa~~g-----------------~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 152 G---AAAYIECSSKTQ-----------------QNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp T---CSEEEECCTTTC-----------------TTHHHHHHHHHHHHHC
T ss_pred C---CceEEEccCCCC-----------------CCHHHHHHHHHHHHhh
Confidence 1 237899999999 9999999999877643
No 145
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.47 E-value=1.2e-06 Score=62.68 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=58.2
Q ss_pred hhhccEEEEEEeCCCCCC-----------CCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 22 VEAADVILEVVDARDPMG-----------TRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~-----------~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
...++++++|+|+..... ..+..+...+.. .+.|+++|+||+|+.+.. .+....+...+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~-- 150 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKNV------QEVINFLAEKFE-- 150 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSCH------HHHHHHHHHHHT--
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh-cCCceEEEeehHhccCcH------HHHHHHHHHHhh--
Confidence 556789999999754211 111223333433 579999999999998751 122344444433
Q ss_pred CC-----CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 91 SI-----YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 91 ~~-----~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
.. .+++.+||+++ .|+++|.+.|.+.+...
T Consensus 151 ~~~~~~~~~~~~~Sa~~~-----------------~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 151 VPLSEIDKVFIPISAKFG-----------------DNIERLKNRIFEVIRER 185 (190)
T ss_dssp CCGGGHHHHEEECCTTTC-----------------TTHHHHHHHHHHHHHHC
T ss_pred hhhhccCCcEEEEecCCC-----------------CCHHHHHHHHHHhcchh
Confidence 11 14689999999 99999999998877543
No 146
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=1.5e-07 Score=69.03 Aligned_cols=98 Identities=13% Similarity=0.018 Sum_probs=60.4
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccc----------cccHHHHHHHH
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQ----------SGSMAQIFQTW 83 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~----------~~~~~~~~~~~ 83 (161)
++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|+||+|+.+.... .... +....+
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~ 167 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRT-DDGRAM 167 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCH-HHHHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCH-HHHHHH
Confidence 33456789999999999987532111 2233333321 37999999999999764100 0000 001111
Q ss_pred hhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 84 IPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 84 ~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
... .+. +++.+||+++ .|+++|.+.|.+.+..
T Consensus 168 ~~~----~~~~~~~~~SA~~g-----------------~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 168 AVR----IQAYDYLECSAKTK-----------------EGVREVFETATRAALQ 200 (207)
T ss_dssp HHH----TTCSEEEECCTTTC-----------------TTHHHHHHHHHHHHHS
T ss_pred HHh----cCCCEEEEeeCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 111 123 6789999999 9999999999877643
No 147
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.8e-08 Score=72.59 Aligned_cols=96 Identities=11% Similarity=-0.055 Sum_probs=59.0
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
++...+..+|++|+|+|++++....+ ..+...+... .+.|+++|+||+|+.+.. .... +....+... .+.
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~----~~~ 150 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR--AVPT-EESKTFAQE----NQL 150 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC--CSCH-HHHHHHHHH----TTC
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCH-HHHHHHHHH----cCC
Confidence 34567789999999999987643211 1122222211 368999999999996531 1111 122223222 356
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+++.+||+++ .|+++|.+.|.+.+..
T Consensus 151 ~~~~~Sa~~~-----------------~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 151 LFTETSALNS-----------------ENVDKAFEELINTIYQ 176 (223)
T ss_dssp EEEECCCC-C-----------------CCHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCC-----------------CCHHHHHHHHHHHHHH
Confidence 7889999998 9999999999877653
No 148
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.45 E-value=1.7e-07 Score=72.47 Aligned_cols=115 Identities=10% Similarity=0.031 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhhccEEE-EEEeCCCCCCCCcH-HHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 13 VVQEIERSVVEAADVIL-EVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL-~VvD~~~~~~~~~~-~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.+..++...+..+|.++ +|+|++.+....+. .+.+.+.. .+.|+++|+||+|+.+.. . .. .......+...
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~-~~~~~i~V~NK~Dl~~~~--~-~~---~~~~~~~~~~~ 222 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP-QGQRTIGVITKLDLMDEG--T-DA---RDVLENKLLPL 222 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT-TCSSEEEEEECGGGSCTT--C-CC---HHHHTTCSSCC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC-CCCeEEEEEEccccCCCC--c-hH---HHHHhCCcCcC
Confidence 45666677888887555 89999887665553 45665654 579999999999998651 0 00 11111111100
Q ss_pred -CC-CceeEEeecCCCCcchhh------------hhhhhccccccCHHHHHHHHHhHh
Q psy8220 91 -SI-YSSPRFSSRSQKDAQTER------------DLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 91 -~~-~~~i~iSa~~~~~~~~~~------------~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+ .+++.+||+++.+....+ ...+.....+.|+..|.+.|.+.+
T Consensus 223 ~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l 280 (299)
T 2aka_B 223 RRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQL 280 (299)
T ss_dssp TTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHH
T ss_pred CCCcEEEECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHH
Confidence 12 357889999986554332 133444566778888887777654
No 149
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.44 E-value=5.6e-08 Score=71.98 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=59.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
...+..+|++++|+|++++.+... ..+...+... .+.|+++|+||+|+.+... ......... ..+.+++
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~~~~~~~~~-~~~~~~~ 152 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------KAKSIVFHR-KKNLQYY 152 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSS--------CGGGCCHHH-HHTCEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccc--------cHHHHHHHH-HcCCEEE
Confidence 456778999999999987543211 1222222211 3789999999999976410 011111111 1256789
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+||+++ .|+++|.+.|.+.+..
T Consensus 153 ~~Sa~~~-----------------~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 153 DISAKSN-----------------YNFEKPFLWLARKLIG 175 (221)
T ss_dssp ECBGGGT-----------------BTTTHHHHHHHHHHHT
T ss_pred EEeCCCC-----------------CCHHHHHHHHHHHHHh
Confidence 9999998 8999999999887654
No 150
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.44 E-value=2.3e-07 Score=67.45 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHHHhC----CCCCcEEEEeecCCCCCc
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDLVVG----TPGKKLVIVINKAGKPST 69 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~----~~~k~~ilVlNK~Dl~~~ 69 (161)
..+..+|++|+|+|++++.......+..++.. ..+.|+++|.||+|+.+.
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 56678999999999988632222333333322 147899999999999864
No 151
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.43 E-value=3.2e-07 Score=79.55 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=40.1
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcHHHH-HHHhCCCCCcEEEEeecCCCCCc
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCKVAE-DLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~-~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
.+.+...+..||++|+|+|++.+.+..+.... +.+.. .+.|+++|+||+|+...
T Consensus 191 ~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~-~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 191 NELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG-RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh-hCCCEEEEEECcccccc
Confidence 44556788999999999999888765444332 34443 47899999999998654
No 152
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.43 E-value=4.7e-07 Score=65.12 Aligned_cols=101 Identities=9% Similarity=-0.055 Sum_probs=60.6
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS 91 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
..++...+..+|++++|.|.+++..+.+ ..+...+... .+.|+++|.||+|+.+.. ............+....
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~ 145 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEK----QRKACMSKITKELLNKR 145 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHH----HHHHHHHHHHHHTTTCT
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccch----hhHHHHHHHHHHHHHhc
Confidence 3343456778999999999987632211 1222222211 368999999999997641 00000111222232222
Q ss_pred CCc----eeEEeecCCCCcchhhhhhhhcccccc-CHHHHHHHHHhHhhc
Q psy8220 92 IYS----SPRFSSRSQKDAQTERDLKAINVSSCV-GAELLMLLLGNYTRN 136 (161)
Q Consensus 92 ~~~----~i~iSa~~~~~~~~~~~~~~~~~~~~~-g~~~L~~~l~~~~~~ 136 (161)
+.+ .+.+||+++ . |+++|.+.|.+.+..
T Consensus 146 ~~~~~~~~~~~Sa~~~-----------------~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 146 GFPAIRDYHFVNATEE-----------------SDALAKLRKTIINESLN 178 (184)
T ss_dssp TSCEEEEEEECCTTSC-----------------CHHHHHHHHHHHHHHHC
T ss_pred CCcchhheEEEecccC-----------------chhHHHHHHHHHHHHhc
Confidence 444 788999988 6 899999999877764
No 153
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.42 E-value=1.6e-08 Score=78.32 Aligned_cols=85 Identities=19% Similarity=0.104 Sum_probs=57.0
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
..+|++++|+|++... ....+...+.+ .+.|+++|+||+|+.... ... .....+...+ +.|++++||++
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~-~~~p~ilv~NK~Dl~~~~--~~~--~~~~~l~~~l----g~~vi~~SA~~ 147 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIE-TGIPVTIALNMIDVLDGQ--GKK--INVDKLSYHL----GVPVVATSALK 147 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHH-TCSCEEEEEECHHHHHHT--TCC--CCHHHHHHHH----TSCEEECBTTT
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHh-cCCCEEEEEEChhhCCcC--CcH--HHHHHHHHHc----CCCEEEEEccC
Confidence 4799999999997631 22333344444 589999999999985431 000 0112222332 57899999999
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+ .|+++|.+.|.+.+.
T Consensus 148 g-----------------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 148 Q-----------------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp T-----------------BSHHHHHHHHHHSCT
T ss_pred C-----------------CCHHHHHHHHHHHHh
Confidence 9 899999988877654
No 154
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.41 E-value=1.5e-07 Score=67.64 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=59.0
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccc----------ccccHHHHHHHH
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKI----------QSGSMAQIFQTW 83 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~----------~~~~~~~~~~~~ 83 (161)
++...+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+... +.... +....+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~ 149 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY-DQGANM 149 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCH-HHHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCH-HHHHHH
Confidence 33456789999999999987533211 1222223221 3689999999999974200 00000 112223
Q ss_pred hhhhccCCCCceeEEeec-CCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 84 IPYNSIQSIYSSPRFSSR-SQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 84 ~~~~~~~~~~~~i~iSa~-~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
...+. ..+.+.+||+ ++ .|+++|.+.|.+.+
T Consensus 150 ~~~~~---~~~~~e~Sa~~~~-----------------~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 150 AKQIG---AATYIECSALQSE-----------------NSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHT---CSEEEECBTTTBH-----------------HHHHHHHHHHHHHH
T ss_pred HHHcC---CcEEEEeeecCCC-----------------cCHHHHHHHHHHHH
Confidence 22221 3578899998 56 79999999887765
No 155
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.40 E-value=1.3e-06 Score=75.64 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=40.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
...+..+|.+|+|+|+.++...+...+...+.. .+.|+++|+||+|+...
T Consensus 95 ~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~-~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 95 ERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECTTSTTC
T ss_pred HHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH-cCCCEEEEEECCCcccC
Confidence 678889999999999998876655555555554 58999999999999765
No 156
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.39 E-value=1.1e-06 Score=79.71 Aligned_cols=117 Identities=14% Similarity=0.007 Sum_probs=70.1
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHHHHh
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
|.|. .|...+ ...+..+|++|+|+|++++...+..+....+.. .+.| +|+|+||+|+.+.+.......+.+..+.
T Consensus 367 PGHe--dF~~~m-i~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 367 PGHA--DYVKNM-ITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp CCHH--HHHHHH-HHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred CChH--HHHHHH-HHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 4543 355555 678899999999999998876666555554543 4678 7899999999863100000001122222
Q ss_pred hhhcc-CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 85 PYNSI-QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 85 ~~~~~-~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
..+.- ....|++++||+++.... .. -..|+++|++.|.++++
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~---~~------w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGD---AE------WEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCC---HH------HHHHHHHHHHHHHHTSC
T ss_pred HhccccccceeEEEEEeccCCCCC---cc------ccccchhhHhHHhhhcC
Confidence 22210 013578999999871100 00 01468899999988665
No 157
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.39 E-value=6.9e-08 Score=69.29 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=57.9
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
..+|++++|+|++.. .....+...+.. .+.|+++|.||+|+.... ... .....+.+.+ +.+++.+||++
T Consensus 84 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~-~~~---~~~~~~~~~~----~~~~~~~Sa~~ 152 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL--ERNLYLTLQLME-MGANLLLALNKMDLAKSL-GIE---IDVDKLEKIL----GVKVVPLSAAK 152 (188)
T ss_dssp HCCSEEEEEEEGGGH--HHHHHHHHHHHT-TTCCEEEEEECHHHHHHT-TCC---CCHHHHHHHH----TSCEEECBGGG
T ss_pred cCCCEEEEEecchhH--HHHHHHHHHHHh-cCCCEEEEEEhhhccccc-cch---HHHHHHHHHh----CCCeEEEEecC
Confidence 459999999998752 122233344444 578999999999985421 000 0112222222 46789999999
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
+ .|+++|.+.|.+.+...
T Consensus 153 ~-----------------~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 153 K-----------------MGIEELKKAISIAVKDK 170 (188)
T ss_dssp T-----------------BSHHHHHHHHHHHHTTC
T ss_pred C-----------------CCHHHHHHHHHHHHHhc
Confidence 8 89999999998887654
No 158
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.37 E-value=3e-07 Score=76.00 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=53.3
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCC-------CcHHHHHHHhCCCCCc-EEEEeecCCCCCc-cccccc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGT-------RCKVAEDLVVGTPGKK-LVIVINKAGKPST-KIQSGS 75 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~-------~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~-~~~~~~ 75 (161)
.|.|.. |...+ ...+..+|++|+|+|++++... +..+....+.. .+.| +|+|+||+|+.+. +.+...
T Consensus 92 tPGh~~--f~~~~-~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v~~iivviNK~Dl~~~~~~~~~~ 167 (458)
T 1f60_A 92 APGHRD--FIKNM-ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVRQLIVAVNKMDSVKWDESRFQE 167 (458)
T ss_dssp CCCCTT--HHHHH-HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCCEEEEEEECGGGGTTCHHHHHH
T ss_pred CCCcHH--HHHHH-HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCCCeEEEEEEccccccCCHHHHHH
Confidence 355542 44444 6788999999999999875321 22232333333 3555 8999999999742 100001
Q ss_pred HHHHHHHHhhhhcc-CCCCceeEEeecCCC
Q psy8220 76 MAQIFQTWIPYNSI-QSIYSSPRFSSRSQK 104 (161)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~i~iSa~~~~ 104 (161)
..+.+..+...+.. ....+++++||+++.
T Consensus 168 i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~ 197 (458)
T 1f60_A 168 IVKETSNFIKKVGYNPKTVPFVPISGWNGD 197 (458)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEECCTTTCB
T ss_pred HHHHHHHHHHHcCCCccCceEEEeecccCc
Confidence 11112222222210 002578999999983
No 159
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.36 E-value=1.6e-06 Score=75.16 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=41.1
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
..++..+|.+|+|+|+..+....+..+...+.. .+.|+++|+||+|+...
T Consensus 93 ~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~-~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 93 ERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT-YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH-TTCCEEEEEECTTSTTC
T ss_pred HHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH-cCCCEEEEEECCCcccc
Confidence 678889999999999998876666666665655 58999999999999765
No 160
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.36 E-value=2.2e-07 Score=68.44 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=58.8
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc--HHHHHHHhCC-CCCcEEEEeecCCCCCccc----------ccccHHHHHHHH
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC--KVAEDLVVGT-PGKKLVIVINKAGKPSTKI----------QSGSMAQIFQTW 83 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~--~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~----------~~~~~~~~~~~~ 83 (161)
++...+..+|++|+|+|++++.+-.. ..+...+... .+.|+++|.||+|+.+... +.... +....+
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~ 170 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY-DQGANM 170 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCH-HHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCH-HHHHHH
Confidence 33456789999999999987532111 1222323221 3689999999999974200 00000 112222
Q ss_pred hhhhccCCCCceeEEeec-CCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 84 IPYNSIQSIYSSPRFSSR-SQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 84 ~~~~~~~~~~~~i~iSa~-~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
...+. ..+++.+||+ ++ .|++++.+.|.+.+
T Consensus 171 ~~~~~---~~~~~e~SAk~~~-----------------~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 171 AKQIG---AATYIECSALQSE-----------------NSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHT---CSEEEECCTTTCH-----------------HHHHHHHHHHHHHH
T ss_pred HHHcC---CCEEEEeeeccCC-----------------cCHHHHHHHHHHHH
Confidence 22221 3568899998 46 79999999887765
No 161
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.34 E-value=3.6e-06 Score=73.03 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=45.0
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+|.|.. |..+. ..++..+|.+|+|+|++++...+...+...+.. .+.|+++|+||+|+...
T Consensus 89 TPG~~d--f~~~~-~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVD--FTIEV-ERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK-YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccc--hHHHH-HHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH-cCCCEEEEEeCCCcccc
Confidence 355532 44444 678899999999999998866555555555544 57999999999998754
No 162
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.34 E-value=1.5e-06 Score=73.40 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=50.7
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+|.|.- |.-+. .+++.-+|-+|+|+||..+...+.+.+.+.+.+ .+.|+|+++||+|....
T Consensus 107 TPGHvD--F~~Ev-~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~-~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 107 TPGHQD--FSEDT-YRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM-RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCGGG--CSHHH-HHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH-TTCCEEEEEECTTSCCC
T ss_pred CCCcHH--HHHHH-HHHHHhcCceEEEeecCCCcccccHHHHHHHHH-hCCceEEEEecccchhc
Confidence 456543 56677 789999999999999999988888888887776 78999999999998654
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.33 E-value=6.5e-07 Score=68.89 Aligned_cols=87 Identities=8% Similarity=-0.007 Sum_probs=49.1
Q ss_pred ccEEEEEEeCCC-CCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCC
Q psy8220 25 ADVILEVVDARD-PMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 25 aDviL~VvD~~~-~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~ 103 (161)
+|++|+++|... +....+..+.+.+.. ++|+|+|+||+|+.+.. +.........+.+. ..+.+++.+||.++
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~~pvi~V~nK~D~~~~~----e~~~~~~~i~~~l~-~~~i~v~~~sa~~~ 188 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTPE----ECQQFKKQIMKEIQ-EHKIKIYEFPETDD 188 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT--TSCEEEEESSGGGSCHH----HHHHHHHHHHHHHH-HTTCCCCCC-----
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc--cCCEEEEEeccCCCCHH----HHHHHHHHHHHHHH-HcCCeEEcCCCCCC
Confidence 788999997654 555666666666653 79999999999998651 11111112222232 13567788999988
Q ss_pred CCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 104 KDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.|+++|.+.|.+.+|
T Consensus 189 -----------------~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 189 -----------------EEENKLVKKIKDRLP 203 (274)
T ss_dssp -----------------------CHHHHHTCS
T ss_pred -----------------hhHHHHHHHHhcCCC
Confidence 899999999988765
No 164
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.33 E-value=8.8e-07 Score=72.68 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=53.5
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCC-------CCCCcHHHHHHHhCCCC-CcEEEEeecCCCCCccccc---c
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDP-------MGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTKIQS---G 74 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~-------~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~~~~~---~ 74 (161)
|.|.. |.... ...+..+|++|+|+|++++ +..+..+....+.. .+ .++++|+||+|+.+..++. .
T Consensus 92 pG~~~--f~~~~-~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~ 167 (435)
T 1jny_A 92 PGHRD--FVKNM-ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLDQLIVAVNKMDLTEPPYDEKRYK 167 (435)
T ss_dssp SSSTT--HHHHH-HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCTTCEEEEECGGGSSSTTCHHHHH
T ss_pred CCcHH--HHHHH-HhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEEEEEcccCCCccccHHHHH
Confidence 55543 34444 6788999999999999985 33333333333333 34 4689999999998631000 0
Q ss_pred cHHHHHHHHhhhhcc-CCCCceeEEeecCC
Q psy8220 75 SMAQIFQTWIPYNSI-QSIYSSPRFSSRSQ 103 (161)
Q Consensus 75 ~~~~~~~~~~~~~~~-~~~~~~i~iSa~~~ 103 (161)
...+.+..+...+.- ....+++++||+++
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g 197 (435)
T 1jny_A 168 EIVDQVSKFMRSYGFNTNKVRFVPVVAPSG 197 (435)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecccC
Confidence 111112222222110 01256899999988
No 165
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.31 E-value=1.4e-07 Score=80.31 Aligned_cols=97 Identities=16% Similarity=0.099 Sum_probs=53.9
Q ss_pred HHhhhccEEEEEEeCCCCC-------CCCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccHHHHHHHHhhhh-ccC
Q psy8220 20 SVVEAADVILEVVDARDPM-------GTRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSMAQIFQTWIPYN-SIQ 90 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~-------~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (161)
..+..||++|+|+|++.+. ..+..+....+.. .+.| +|+|+||+|+.+.. ...+..........+ ...
T Consensus 274 ~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip~iIvviNKiDl~~~~--~~~~~~i~~el~~~l~~~~ 350 (592)
T 3mca_A 274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGISEIVVSVNKLDLMSWS--EDRFQEIKNIVSDFLIKMV 350 (592)
T ss_dssp C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCCCEEEEEECGGGGTTC--HHHHHHHHHHHHHHHTTTS
T ss_pred HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEEEEecccccccc--HHHHHHHHHHHHHHHHHhh
Confidence 4567899999999998753 3444444444444 4665 89999999997620 001111112222233 110
Q ss_pred C----CCceeEEeecCCCCcchhhhhhhhccccccCHH--------------HHHHHHHhHhhc
Q psy8220 91 S----IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAE--------------LLMLLLGNYTRN 136 (161)
Q Consensus 91 ~----~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~--------------~L~~~l~~~~~~ 136 (161)
. ..+++++||+++ .|+. .|++.|.++.+.
T Consensus 351 g~~~~~~~ii~iSA~~G-----------------~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp 397 (592)
T 3mca_A 351 GFKTSNVHFVPISAISG-----------------TNLIQKDSSDLYKWYKGPTLLSALDQLVPP 397 (592)
T ss_dssp CCCGGGEEEEEECSSSC-----------------SSSCSCCCCGGGGTCCSCCHHHHHHTSCCC
T ss_pred CCCccceEEEEEecccC-----------------cccccccccccccccchHHHHHHHHhhccc
Confidence 1 236899999999 6665 788888877653
No 166
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.31 E-value=4.4e-06 Score=70.30 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
...+..+|.+|+|+|+.++...+...+...+.. .+.|+++|+||+|+...
T Consensus 100 ~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 100 YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-TTCCEEEEEECTTSCCS
T ss_pred HHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-cCCCEEEEEcCcCCccc
Confidence 678899999999999998876555666665554 58999999999999765
No 167
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.31 E-value=7.9e-07 Score=64.15 Aligned_cols=92 Identities=9% Similarity=-0.128 Sum_probs=58.3
Q ss_pred HHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC-----CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCC
Q psy8220 20 SVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT-----PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIY 93 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
..+..+|++++|+|++++.+-.. ..+...+... .+.|+++|.||+|+.... .... +....+...+ +.
T Consensus 87 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~v~~-~~~~~~~~~~----~~ 159 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR--QVTK-AEGVALAGRF----GC 159 (187)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC--SSCH-HHHHHHHHHH----TC
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcC--ccCH-HHHHHHHHHc----CC
Confidence 46678999999999986532111 1122222210 368999999999996431 1111 2223333332 46
Q ss_pred ceeEEee-cCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 94 SSPRFSS-RSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 94 ~~i~iSa-~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+.+|| +++ .|+++|.+.|.+.+.
T Consensus 160 ~~~e~Sa~~~g-----------------~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 160 LFFEVSACLDF-----------------EHVQHVFHEAVREAR 185 (187)
T ss_dssp EEEECCSSSCS-----------------HHHHHHHHHHHHHHH
T ss_pred cEEEEeecCcc-----------------ccHHHHHHHHHHHHh
Confidence 7899999 788 899999999877654
No 168
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.30 E-value=3.1e-07 Score=77.13 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=56.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeE
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPR 97 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 97 (161)
...+..+|++|+|+|++.+ .....+...+... .+.|+++|.||+|+.+.. .... +....+... .+.+++.
T Consensus 116 ~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~--~v~~-~~~~~~~~~----~~~~~~~ 186 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSY--NIEQ-KKINERFPA----IENRFHR 186 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTC--CCCH-HHHHHHCGG----GTTCEEE
T ss_pred HHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccccc--ccCH-HHHHHHHHh----cCCceEE
Confidence 3456789999999999764 2334444444431 358999999999997641 1011 112222222 2567899
Q ss_pred EeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 98 FSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 98 iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+||+++ .|+++|.+.|.+.+..
T Consensus 187 vSA~~g-----------------~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 187 ISCKNG-----------------DGVESIAKSLKSAVLH 208 (535)
T ss_dssp CCC----------------------CTTHHHHHHHHHTC
T ss_pred EecCcc-----------------cCHHHHHHHHHHHHhc
Confidence 999999 8888888888776654
No 169
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.29 E-value=7.1e-07 Score=66.69 Aligned_cols=96 Identities=11% Similarity=-0.039 Sum_probs=61.5
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC--CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCC
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT--PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSI 92 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
.++...+..||.+++|.|.+++.+-.. ..+...+... .+.|+++|.||+|+.... .... +....+...+ +
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r--~V~~-~e~~~~a~~~----~ 149 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR--QVSI-EEGERKAKEL----N 149 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC--CSCH-HHHHHHHHHH----T
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC--cccH-HHHhhHHHHh----C
Confidence 344556789999999999987643211 1222222211 468999999999986531 1111 2223333332 4
Q ss_pred CceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 93 YSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 93 ~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.+.+.+||+++ .|++++.+.|.+.+.
T Consensus 150 ~~~~e~SAktg-----------------~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 150 VMFIETSAKAG-----------------YNVKQLFRRVAAALP 175 (216)
T ss_dssp CEEEEEBTTTT-----------------BSHHHHHHHHHHHC-
T ss_pred CeeEEEeCCCC-----------------cCHHHHHHHHHHHHH
Confidence 67889999999 999999998876654
No 170
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.28 E-value=4.3e-07 Score=70.81 Aligned_cols=98 Identities=12% Similarity=-0.071 Sum_probs=60.9
Q ss_pred HHHHHHhhhccEEEEEEeCCCCCCCCcH--HHHHHHhCC-CCCcEEEEeecCCCCCccc----------ccccHHHHHHH
Q psy8220 16 EIERSVVEAADVILEVVDARDPMGTRCK--VAEDLVVGT-PGKKLVIVINKAGKPSTKI----------QSGSMAQIFQT 82 (161)
Q Consensus 16 ~~~~~~i~~aDviL~VvD~~~~~~~~~~--~i~~~l~~~-~~k~~ilVlNK~Dl~~~~~----------~~~~~~~~~~~ 82 (161)
.++...+..+|++++|+|++++.+-.+. .+...+... .+.|+++|.||+|+.+... +.... +....
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~ 296 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLA 296 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH-HHHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccH-HHHHH
Confidence 3335678899999999999876432111 222333321 3789999999999865310 00000 11122
Q ss_pred HhhhhccCCCC-ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 83 WIPYNSIQSIY-SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 83 ~~~~~~~~~~~-~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+... .+. +++.+||+++ .|+++|.+.|.+.+.
T Consensus 297 ~~~~----~~~~~~~~~Sa~~~-----------------~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 297 MAKE----IGAVKYLECSALTQ-----------------RGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHH----TTCSEEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred HHHH----cCCcEEEEecCCCC-----------------cCHHHHHHHHHHHHh
Confidence 2222 233 7889999999 999999999887653
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.28 E-value=6.3e-07 Score=76.66 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=53.6
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCC-------CCCCcHHHHHHHhCCCC-CcEEEEeecCCCCCcc-ccccc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDP-------MGTRCKVAEDLVVGTPG-KKLVIVINKAGKPSTK-IQSGS 75 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~-------~~~~~~~i~~~l~~~~~-k~~ilVlNK~Dl~~~~-~~~~~ 75 (161)
.|.|.. |.... ...+..||++|+|+|++.+ ...+..+....+.. .+ +|+|+|+||+|+.+.. .+...
T Consensus 252 TPG~e~--f~~~~-~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~~~~~~~~~e 327 (611)
T 3izq_1 252 APGHRD--FVPNA-IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQRFEE 327 (611)
T ss_dssp CCSSSC--HHHHH-TTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTTTTCHHHHHH
T ss_pred CCCCcc--cHHHH-HHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEecccccchhHHHHHH
Confidence 355543 34444 6788999999999999874 12233333333443 34 5699999999998621 00000
Q ss_pred HHHHHHHHhhhhcc-CCCCceeEEeecCC
Q psy8220 76 MAQIFQTWIPYNSI-QSIYSSPRFSSRSQ 103 (161)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~i~iSa~~~ 103 (161)
....+..+...+.. ....+++++||+++
T Consensus 328 i~~~l~~~l~~~g~~~~~~~~i~vSA~tG 356 (611)
T 3izq_1 328 IKSKLLPYLVDIGFFEDNINWVPISGFSG 356 (611)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEECCTTTC
T ss_pred HHHHHHHHHHhhcccccCccEEeeecccC
Confidence 11112222222210 01357899999998
No 172
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.25 E-value=2.2e-06 Score=62.75 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=34.4
Q ss_pred HHHHHhhhccEEEEEEeCCCCCCCCc---HHHHHHHhC----CCCCcEEEEeecCCCCCc
Q psy8220 17 IERSVVEAADVILEVVDARDPMGTRC---KVAEDLVVG----TPGKKLVIVINKAGKPST 69 (161)
Q Consensus 17 ~~~~~i~~aDviL~VvD~~~~~~~~~---~~i~~~l~~----~~~k~~ilVlNK~Dl~~~ 69 (161)
++...+..+|++++|+|+++...... ..+...+.. ..+.|+++|.||+|+.+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 55566899999999999976321111 112222211 136899999999999764
No 173
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.25 E-value=7.3e-07 Score=67.73 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=59.4
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC----CCCcEEEEee-cCCCCCcccccccHHH--------HHHHHhh
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT----PGKKLVIVIN-KAGKPSTKIQSGSMAQ--------IFQTWIP 85 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~----~~k~~ilVlN-K~Dl~~~~~~~~~~~~--------~~~~~~~ 85 (161)
...+..+|++|+|+|+.. +...+..+.+.+.+. ...|.++|+| |+|+.+.. ... .+..+..
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----HHHHHHHCCCHHHHHHHH
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----HHHHHHhcchHHHHHHHH
Confidence 557788999999999985 444444444444331 1578888888 99997541 111 0111223
Q ss_pred hhccCC-CCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 86 YNSIQS-IYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 86 ~~~~~~-~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
.+.... .+..+++||+++ .|+++|.+.|.+.++.
T Consensus 174 ~~~~~~~~~~~~~~SA~~~-----------------~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQD-----------------DQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccH-----------------HHHHHHHHHHHHHHHh
Confidence 322100 022277898887 8999999999887765
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.25 E-value=4e-07 Score=76.13 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=61.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh---hhccC--CCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP---YNSIQ--SIY 93 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~--~~~ 93 (161)
...+..+|++++|+|++++...+..+...++.. .+.|+++|+||+|+.+...+ .+..... .+.+. ...
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~vPiIVviNKiDl~~~~~~------~v~~~l~~~~~~~~~~~~~~ 141 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQVPVVVAVNKIDKPEADPD------RVKNELSQYGILPEEWGGES 141 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TTCCEEEEEECSSSSTTCCC------CTTCCCCCCCCCTTCCSSSC
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cCceEEEEEEeccccccCHH------HHHHHHHHhhhhHHHhCCCc
Confidence 356788999999999998766666555555554 57999999999999753100 0010000 01100 125
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
|++++||+++ .|+++|++.|...
T Consensus 142 ~~v~vSAktG-----------------~gI~eLle~I~~~ 164 (501)
T 1zo1_I 142 QFVHVSAKAG-----------------TGIDELLDAILLQ 164 (501)
T ss_dssp EEEECCTTTC-----------------TTCTTHHHHTTTT
T ss_pred cEEEEeeeec-----------------cCcchhhhhhhhh
Confidence 7899999999 8999999998653
No 175
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.23 E-value=1.6e-06 Score=74.53 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+|.|.- |..+. .+++.-+|.+|+|+||..+...+.+.+.+.+.. .+.|.|+++||+|....
T Consensus 74 TPGH~D--F~~Ev-~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~-~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 74 TPGHMD--FLAEV-YRSLSVLDGAILLISAKDGVQAQTRILFHALRK-MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp CCCSSS--THHHH-HHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH-HTCSCEECCEECCSSSC
T ss_pred CCCcHH--HHHHH-HHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH-cCCCeEEEEeccccccC
Confidence 467654 67787 789999999999999999998888888877766 68999999999997654
No 176
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.22 E-value=1.3e-06 Score=72.28 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=47.6
Q ss_pred CCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCC-------CCcHHHHHHHhCCCCCc-EEEEeecCCCCCcccccccH-
Q psy8220 6 PMEMRGVVVQEIERSVVEAADVILEVVDARDPMG-------TRCKVAEDLVVGTPGKK-LVIVINKAGKPSTKIQSGSM- 76 (161)
Q Consensus 6 p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~-------~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~~~~~~~~- 76 (161)
|.|. .|...+ ...+..+|++|+|+|++++.. .+..+....+.. .+.| +|+|+||+|+.+.......+
T Consensus 129 PGh~--~f~~~~-~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~vp~iivviNK~Dl~~~~~~~~~~~ 204 (467)
T 1r5b_A 129 PGHK--GYVTNM-INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGINHLVVVINKMDEPSVQWSEERYK 204 (467)
T ss_dssp CC--------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCSSEEEEEECTTSTTCSSCHHHHH
T ss_pred CCcH--HHHHHH-HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCCCEEEEEEECccCCCccccHHHHH
Confidence 5553 244555 577899999999999998631 233333333333 4676 89999999996421000011
Q ss_pred --HHHHHHHhhhh-ccCC---CCceeEEeecCCC
Q psy8220 77 --AQIFQTWIPYN-SIQS---IYSSPRFSSRSQK 104 (161)
Q Consensus 77 --~~~~~~~~~~~-~~~~---~~~~i~iSa~~~~ 104 (161)
...+..+...+ . .. ..+++++||+++.
T Consensus 205 ~i~~e~~~~l~~~~g-~~~~~~~~~i~vSA~~g~ 237 (467)
T 1r5b_A 205 ECVDKLSMFLRRVAG-YNSKTDVKYMPVSAYTGQ 237 (467)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHEEEEECBTTTTB
T ss_pred HHHHHHHHHHHHhcC-CCccCCceEEeccccccc
Confidence 11122222222 1 01 3468999999983
No 177
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.22 E-value=3.2e-06 Score=63.95 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=56.6
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHH-H----HHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhh-------h-
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKV-A----EDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIP-------Y- 86 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~-i----~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~-------~- 86 (161)
+++.+ +++++|+|+.......+.. . ...... .+.|.++|+||+|+.+.. .. +.+..+.+ .
T Consensus 134 ~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~iv~NK~D~~~~~----~~-~~~~~~l~~~~~~~~~l 206 (262)
T 1yrb_A 134 ENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR-LGATTIPALNKVDLLSEE----EK-ERHRKYFEDIDYLTARL 206 (262)
T ss_dssp HTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-HTSCEEEEECCGGGCCHH----HH-HHHHHHHHCHHHHHHHH
T ss_pred HHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-cCCCeEEEEecccccccc----cH-HHHHHHHhChHHHHHHH
Confidence 55667 9999999987554332211 1 111111 368999999999987641 00 00111110 0
Q ss_pred -----------------hccC-CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 87 -----------------NSIQ-SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 87 -----------------~~~~-~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+... ...+++++||+++ .|+++|.+.|.+.++.
T Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~-----------------~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 207 KLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR-----------------EGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC-----------------TTHHHHHHHHHHHHHH
T ss_pred hccccccchhHhHHHHHHHHhcCcccceEEEecCc-----------------ccHHHHHHHHHHHhcc
Confidence 0110 1237899999998 9999999999887653
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.20 E-value=7e-06 Score=70.82 Aligned_cols=52 Identities=31% Similarity=0.300 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
..+. ...+..+|.+++|+|+.++...+...+...+.. .+.|+++|+||+|+.
T Consensus 88 ~~~~-~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~-~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEI-RGALEAADAALVAVSAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH-HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC
T ss_pred HHHH-HHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH-ccCCEEEEecCCchh
Confidence 3344 678899999999999988876655666666655 589999999999987
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.19 E-value=2.4e-06 Score=68.19 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCC-C-CCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPM-G-TRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI 89 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~-~-~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
+.+..++...+.++|++|+|+|+.... . .....+...+.. .++|+++|+||+|+.++. ... .........
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~-~~~~~i~V~nK~Dl~~~~--~~~-----~~~~~~~~~ 231 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP-SGDRTFGVLTKIDLMDKG--TDA-----VEILEGRSF 231 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCT-TCTTEEEEEECGGGCCTT--CCS-----HHHHTTSSS
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcc-cCCCEEEEEeCCccCCCc--ccH-----HHHHcCccc
Confidence 456777788999999999999875432 2 222334444433 578999999999998652 000 111111111
Q ss_pred CCCCceeEEeecCCCCcchhh---------hh------hhhccccccCHHHHHHHHHhHh
Q psy8220 90 QSIYSSPRFSSRSQKDAQTER---------DL------KAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 90 ~~~~~~i~iSa~~~~~~~~~~---------~~------~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
..+.+.+.+|+.++.+..... .. .|.....+.|+..|.+.|.+.+
T Consensus 232 ~~~~~~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l 291 (360)
T 3t34_A 232 KLKYPWVGVVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHL 291 (360)
T ss_dssp CCSSCCEEECCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHH
T ss_pred cccCCeEEEEECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHH
Confidence 134567888887753221110 11 2333345689998888876655
No 180
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=4.8e-06 Score=61.87 Aligned_cols=92 Identities=13% Similarity=-0.031 Sum_probs=57.6
Q ss_pred HHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhCC---CCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 20 SVVEAADVILEVVDARDPMGTRC-KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
.....+|.+++|.|.++..+-.. ..+...+... .+.|+++|.||+|+.+.. .... +....+... .+.+.
T Consensus 107 ~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r--~v~~-~e~~~~a~~----~~~~~ 179 (211)
T 2g3y_A 107 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCR--EVSV-SEGRACAVV----FDCKF 179 (211)
T ss_dssp CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGC--CSCH-HHHHHHHHH----HTCEE
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCc--eEeH-HHHHHHHHH----cCCEE
Confidence 34567899999999876432111 1222323321 368999999999996431 1111 111222222 24578
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+.+||+++ .|+++|.+.|.+.+.
T Consensus 180 ~e~SAk~g-----------------~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 180 IETSAAVQ-----------------HNVKELFEGIVRQVR 202 (211)
T ss_dssp EECBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred EEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 89999999 999999999887654
No 181
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.15 E-value=1.3e-05 Score=58.33 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=61.8
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC-CCCceeEEe
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ-SIYSSPRFS 99 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS 99 (161)
....+|.+++|+|++.+....+..+..++.. .+.|.++|.||+|+.+...++ .........+... ...+..++|
T Consensus 105 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~nK~D~~s~~~~~----~~~~~~~~~~~~~~~~~~~~~~S 179 (210)
T 1pui_A 105 KRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SNIAVLVLLTKADKLASGARK----AQLNMVREAVLAFNGDVQVETFS 179 (210)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTCCEEEEEECGGGSCHHHHH----HHHHHHHHHHGGGCSCEEEEECB
T ss_pred hhhcccEEEEEEECCCCCchhHHHHHHHHHH-cCCCeEEEEecccCCCchhHH----HHHHHHHHHHHhcCCCCceEEEe
Confidence 3467899999999988765444455555544 578999999999988651000 0011122222211 123567899
Q ss_pred ecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 100 SRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
|+++ .|+++|.+.|.+..+.
T Consensus 180 al~~-----------------~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 180 SLKK-----------------QGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTTT-----------------BSHHHHHHHHHHHHC-
T ss_pred ecCC-----------------CCHHHHHHHHHHHHhh
Confidence 9998 9999999999887654
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.14 E-value=2.8e-06 Score=67.55 Aligned_cols=89 Identities=13% Similarity=0.044 Sum_probs=51.1
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC------CCc
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS------IYS 94 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 94 (161)
....||++|+|+|+..+..... +.... .+.|.++|+||+|+.+.. ........+...+.... ..+
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~~--l~~~~---~~~p~ivv~NK~Dl~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQG--IKKGL---MEVADLIVINKDDGDNHT----NVAIARHMYESALHILRRKYDEWQPR 236 (341)
T ss_dssp HHTTCSEEEEEECC------CC--CCHHH---HHHCSEEEECCCCTTCHH----HHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred HHHhCCEEEEEEeCCccHHHHH--HHHhh---hcccCEEEEECCCCCChH----HHHHHHHHHHHHHHhccccccCCCCc
Confidence 4579999999999875422111 11011 137889999999997641 01011112222111001 245
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++++||+++ .|+++|.+.|.+.++
T Consensus 237 vi~iSA~~g-----------------~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 237 VLTCSALEK-----------------RGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEECBGGGT-----------------BSHHHHHHHHHHHHH
T ss_pred EEEeeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 789999999 899999998887654
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.13 E-value=4.1e-06 Score=66.86 Aligned_cols=90 Identities=10% Similarity=0.068 Sum_probs=51.6
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhcc------CCCC
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSI------QSIY 93 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 93 (161)
...+.+|++++|+|+..+... ..+...+ ...|.++|+||+|+.+.. ........+...+.. ....
T Consensus 183 ~l~~~~d~vl~V~d~~~~~~~--~~i~~~i---l~~~~ivVlNK~Dl~~~~----~~~~~~~~l~~~l~~~~~~a~~~~~ 253 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGGDEL--QGIKRGI---IEMADLVAVTKSDGDLIV----PARRIQAEYVSALKLLRKRSQVWKP 253 (349)
T ss_dssp HHHTTCSEEEEEECCC-----------------CCSCSEEEECCCSGGGHH----HHHHHHHHHHHHHTTCC-----CCC
T ss_pred hHHhhCCEEEEEEcCCcchhH--HHhHHHH---HhcCCEEEEeeecCCCch----hHHHHHHHHHHHHHhcCccccCCCc
Confidence 346789999999998765321 1121112 247889999999997531 000011222221110 0124
Q ss_pred ceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 94 SSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 94 ~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
+++++||+++ .|+++|.+.|.++++
T Consensus 254 ~vi~iSA~~g-----------------~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 254 KVIRISARSG-----------------EGISEMWDKMKDFQD 278 (349)
T ss_dssp EEEECCTTTC-----------------TTHHHHHHHHHHHHH
T ss_pred eEEEEecCCC-----------------CCHHHHHHHHHHHHH
Confidence 5788999998 899999999887653
No 184
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.08 E-value=7.8e-06 Score=61.99 Aligned_cols=100 Identities=9% Similarity=0.010 Sum_probs=59.1
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-----CCCcEEEEeecCCCCCcccccccHHHHHHH----HhhhhccC
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-----PGKKLVIVINKAGKPSTKIQSGSMAQIFQT----WIPYNSIQ 90 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~ 90 (161)
.....+|++|+|+|+.. ++..+..+.+.+.+. .+.|+++|.||+|+.... +.+.+.. ....+.+.
T Consensus 101 ~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-----~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-----LHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----HHHHHHHCCCHHHHHHHHH
T ss_pred hcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-----HHHHHhhcccHHHHHHHHH
Confidence 34499999999999975 444444544444331 158999999999997641 1111110 01111111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
.+...++|++... ++..+.|+++|++.|.++++..
T Consensus 175 ~g~~~~~~~~~~~------------~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 175 CGGRVCAFDNRAT------------GREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTTCEEECCTTCC------------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEeCCCC------------ccccHHHHHHHHHHHHHHHHHc
Confidence 2445666765542 0111378999999999888753
No 185
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.08 E-value=4e-06 Score=65.66 Aligned_cols=55 Identities=11% Similarity=0.216 Sum_probs=37.4
Q ss_pred HHHHHHHhhhccEEEEEEeCCCCCCCCcH-HHHHHHhC----CCCCcEEEEeecCCCCCc
Q psy8220 15 QEIERSVVEAADVILEVVDARDPMGTRCK-VAEDLVVG----TPGKKLVIVINKAGKPST 69 (161)
Q Consensus 15 ~~~~~~~i~~aDviL~VvD~~~~~~~~~~-~i~~~l~~----~~~k~~ilVlNK~Dl~~~ 69 (161)
..++...+..+|++++|+|++++.+..+. .+.+.+.. ..+.|+++|+||+|+.+.
T Consensus 71 ~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 71 TKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred hhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 44556777899999999999887532221 11221211 147999999999999873
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.06 E-value=1.8e-06 Score=68.87 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=66.2
Q ss_pred HHHHHHHHHh-hhccEEEEEEeCCCCCCCCcH-HHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccC
Q psy8220 13 VVQEIERSVV-EAADVILEVVDARDPMGTRCK-VAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQ 90 (161)
Q Consensus 13 ~~~~~~~~~i-~~aDviL~VvD~~~~~~~~~~-~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161)
.++.++...+ ..+|++|+|+|+...+...+. .+.+.+.. .+.|+++|+||+|+.++. . ...+.+. ...+...
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~-~~~~~i~V~NK~Dl~~~~--~-~~~~~~~--~~~~~l~ 228 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP-QGQRTIGVITKLDLMDEG--T-DARDVLE--NKLLPLR 228 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT-TCTTEEEEEECGGGSCTT--C-CCHHHHT--TCSSCCT
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc-CCCceEEEeccccccCcc--h-hHHHHHh--CCccccc
Confidence 4555544555 456788889998876655554 35565554 579999999999998651 0 0001111 0111100
Q ss_pred CC-CceeEEeecCCCCcchhhh------------hhhhccccccCHHHHHHHHHhHh
Q psy8220 91 SI-YSSPRFSSRSQKDAQTERD------------LKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 91 ~~-~~~i~iSa~~~~~~~~~~~------------~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+ .+++.+||+++.+....+. -.|.....+.|+..|.+.|.+.+
T Consensus 229 ~~~~~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l 285 (353)
T 2x2e_A 229 RGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQL 285 (353)
T ss_dssp TCEEECCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHH
T ss_pred CCceEEEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHH
Confidence 12 3567889988744333211 12344456778787777776543
No 187
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.06 E-value=3e-06 Score=61.47 Aligned_cols=90 Identities=13% Similarity=-0.055 Sum_probs=55.4
Q ss_pred HhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC---CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCcee
Q psy8220 21 VVEAADVILEVVDARDPMGTRC-KVAEDLVVG---TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~---~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (161)
....+|.+++|.|.++..+-.. ..+...+.. ..+.|+++|.||+|+.... .... +....+... .+.+.+
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r--~v~~-~~~~~~a~~----~~~~~~ 149 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR--EVSV-SEGRAXAVV----FDXKFI 149 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGC--CSCH-HHHHHHHHH----TTCEEE
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccc--cccH-HHHHHHHHH----hCCceE
Confidence 4456899999999876532111 122222221 1368999999999986431 1111 111222221 245778
Q ss_pred EEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 97 RFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 97 ~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
.+||+++ .|+++|.+.|.+.+
T Consensus 150 e~SA~~g-----------------~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 150 ETSAAVQ-----------------HNVKELFEGIVRQV 170 (192)
T ss_dssp ECBTTTT-----------------BSHHHHHHHHHHHH
T ss_pred EeccccC-----------------CCHHHHHHHHHHHH
Confidence 8999999 89999999887655
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.02 E-value=5.8e-06 Score=60.85 Aligned_cols=84 Identities=13% Similarity=0.021 Sum_probs=51.5
Q ss_pred ccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCC
Q psy8220 25 ADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQK 104 (161)
Q Consensus 25 aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~ 104 (161)
++.+++|+|+..+.. ....+... .+.|.++|+||+|+.+.. .... +....+...+. ...+++++||+++
T Consensus 130 ~~~~i~vvd~~~~~~----~~~~~~~~-~~~~~iiv~NK~Dl~~~~--~~~~-~~~~~~~~~~~--~~~~i~~~Sa~~g- 198 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDD----VVEKHPEI-FRVADLIVINKVALAEAV--GADV-EKMKADAKLIN--PRAKIIEMDLKTG- 198 (221)
T ss_dssp CSEEEEEEEGGGCTT----HHHHCHHH-HHTCSEEEEECGGGHHHH--TCCH-HHHHHHHHHHC--TTSEEEECBTTTT-
T ss_pred cCcEEEEEeCCCcch----hhhhhhhh-hhcCCEEEEecccCCcch--hhHH-HHHHHHHHHhC--CCCeEEEeecCCC-
Confidence 455667999876532 11111111 258899999999986420 0011 12223333222 2457899999999
Q ss_pred CcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 105 DAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
.|+++|.+.|.+.+.
T Consensus 199 ----------------~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 199 ----------------KGFEEWIDFLRGILN 213 (221)
T ss_dssp ----------------BTHHHHHHHHHHHHC
T ss_pred ----------------CCHHHHHHHHHHHHH
Confidence 999999999987664
No 189
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.01 E-value=2.4e-05 Score=67.93 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 5 KPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 5 ~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+|.|.- |.-+. ..++.-+|-+|+|+|+..+...+.+.+.+...+ .+.|.++++||+|....
T Consensus 92 TPGHvD--F~~Ev-~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVD--FTIEV-ERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTT--CHHHH-HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-HTCCEEEEEECSSSTTC
T ss_pred CCCCcc--cHHHH-HHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-cCCCeEEEEccccccCc
Confidence 466654 67788 789999999999999999998888888877765 68999999999998654
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.00 E-value=1.3e-05 Score=65.65 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=59.8
Q ss_pred HHhhhccEEEEEEeCC-CCCCCCc---HHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 20 SVVEAADVILEVVDAR-DPMGTRC---KVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~-~~~~~~~---~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
+.++.+|.+|+|+|+. .+..... .++..+......+|.++|+||+|+... .....+.+.+. ..+.++
T Consensus 231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--------~~~~~l~~~l~-~~g~~v 301 (416)
T 1udx_A 231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--------EAVKALADALA-REGLAV 301 (416)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------HHHHHHHHHHH-TTTSCE
T ss_pred HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--------HHHHHHHHHHH-hcCCeE
Confidence 4567899999999996 2221111 111111100025899999999998754 22333334433 135678
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhcC
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 137 (161)
+.+||+++ .|+++|.+.|.+.+...
T Consensus 302 i~iSA~~g-----------------~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 302 LPVSALTG-----------------AGLPALKEALHALVRST 326 (416)
T ss_dssp EECCTTTC-----------------TTHHHHHHHHHHHHHTS
T ss_pred EEEECCCc-----------------cCHHHHHHHHHHHHHhc
Confidence 99999998 99999999999887543
No 191
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.95 E-value=8.1e-06 Score=65.43 Aligned_cols=68 Identities=7% Similarity=-0.039 Sum_probs=38.3
Q ss_pred ccEEEEEEeC-CCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHH----HHhhhhccCCCCceeEEe
Q psy8220 25 ADVILEVVDA-RDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQ----TWIPYNSIQSIYSSPRFS 99 (161)
Q Consensus 25 aDviL~VvD~-~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~iS 99 (161)
+|++++++|. ..++...+..+...+. .+.|+|+|+||+|+... ..+. .....+. ..+.+++.+|
T Consensus 146 v~~~vy~I~~~~~~l~~~d~~~~~~l~--~~~piIlV~NK~Dl~~~--------~ev~~~k~~i~~~~~-~~~i~~~~~S 214 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDVAFMKAIH--NKVNIVPVIAKADTLTL--------KERERLKKRILDEIE-EHNIKIYHLP 214 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHTC--S-SCEEEEEECCSSSCH--------HHHHHHHHHHHHHTT-CC-CCSCCCC
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHhc--cCCCEEEEEECCCCCCH--------HHHHHHHHHHHHHHH-HCCCCEEeCC
Confidence 3578888876 4455444444445443 47899999999999875 2222 1122222 2356788999
Q ss_pred ecCC
Q psy8220 100 SRSQ 103 (161)
Q Consensus 100 a~~~ 103 (161)
|+++
T Consensus 215 a~~~ 218 (361)
T 2qag_A 215 DAES 218 (361)
T ss_dssp ----
T ss_pred CcCC
Confidence 9987
No 192
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.92 E-value=7e-07 Score=72.65 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCC
Q psy8220 54 GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQ 103 (161)
Q Consensus 54 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~ 103 (161)
.+|+++|+||+|+... +.+..+.+.+.. .+.+++++||+.+
T Consensus 214 ~kP~i~v~NK~D~~~~--------~~l~~l~~~~~~-~~~~vv~iSA~~e 254 (397)
T 1wxq_A 214 NKPMVIAANKADAASD--------EQIKRLVREEEK-RGYIVIPTSAAAE 254 (397)
T ss_dssp HSCEEEEEECGGGSCH--------HHHHHHHHHHHH-TTCEEEEECHHHH
T ss_pred CCCEEEEEeCccccch--------HHHHHHHHHHhh-cCCcEEEEeccch
Confidence 4999999999998733 223333333321 2457899999886
No 193
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.89 E-value=8.9e-05 Score=55.50 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHH---HHHHhCC---CCCcEEEEeecC-CCCCcccccccHHHHHHHH
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPMGTRC-KVA---EDLVVGT---PGKKLVIVINKA-GKPSTKIQSGSMAQIFQTW 83 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i---~~~l~~~---~~k~~ilVlNK~-Dl~~~~~~~~~~~~~~~~~ 83 (161)
+.++.+|+...+.+|.+|||||+.+...... .++ ...+.+. .+.|+++..||. |+... . .. ..+...
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-m---s~-~EI~e~ 187 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-M---PC-FYLAHE 187 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB-C---CH-HHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC-C---CH-HHHHHH
Confidence 4578888889999999999999987632211 223 2223221 367999999995 67432 0 11 122222
Q ss_pred hhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 84 IPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 84 ~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+..-......-+.+.||.+| .|+.+=+++|.+.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TG-----------------eGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETL-----------------TGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTC-----------------TTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCC-----------------cCHHHHHHHHHHHHHh
Confidence 21111012344788999999 9999999998776543
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.88 E-value=2.1e-05 Score=66.40 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCC-CCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 14 VQEIERSVVEAADVILEVVDARDP-MGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~-~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+..++...+..+|++|+|+|++.+ ....+..+.+.+.. .+.|+++|+||+|+.+.
T Consensus 178 f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 178 FPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-HEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-CGGGEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-cCCCEEEEEECCCccCH
Confidence 344556788999999999999874 44444556665654 56899999999999875
No 195
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.82 E-value=2.2e-05 Score=58.76 Aligned_cols=100 Identities=8% Similarity=0.032 Sum_probs=53.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC----CCCcEEEEeecCCCCCcccccc-cHH---HHHHHHhhhhccC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT----PGKKLVIVINKAGKPSTKIQSG-SMA---QIFQTWIPYNSIQ 90 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~----~~k~~ilVlNK~Dl~~~~~~~~-~~~---~~~~~~~~~~~~~ 90 (161)
......+|++|+|+|+... ...+..+...+... ..+|+++|+||+|+.+.. ... .+. +.+..+.+.+
T Consensus 107 ~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~~~~--- 181 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLMDIF--- 181 (239)
T ss_dssp HHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------CHHHHHHHHHH---
T ss_pred HhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHHHHc---
Confidence 4556678999999998743 33333333333210 246999999999987641 000 000 1122222222
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
+...+++++..+. +....++.+|++.+.+....
T Consensus 182 -~~~~~~~~~~~~~------------~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 182 -GDRYCALNNKATG------------AEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp -SSSEEECCTTCCH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEECCCCc------------cccHHHHHHHHHHHHHHHHH
Confidence 3345666655320 11125788999888877654
No 196
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.78 E-value=2.4e-05 Score=57.32 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=31.5
Q ss_pred HhhhccEEEEEEeCC-CCCC--CCcHHHHHHHhC-----CCCCcEEEEeecCCCCCc
Q psy8220 21 VVEAADVILEVVDAR-DPMG--TRCKVAEDLVVG-----TPGKKLVIVINKAGKPST 69 (161)
Q Consensus 21 ~i~~aDviL~VvD~~-~~~~--~~~~~i~~~l~~-----~~~k~~ilVlNK~Dl~~~ 69 (161)
.+..+|.+|+|+|++ ++.. .....+.+.+.. ..+.|+++|+||+|+.+.
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 344599999999998 3322 112223332211 037899999999999765
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.66 E-value=4.5e-06 Score=67.45 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=16.5
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.+|++||+||||||||.+
T Consensus 73 a~V~ivG~PNvGKSTL~n 90 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLS 90 (376)
T ss_dssp EEEEEECCCCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 599999999999999964
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.66 E-value=9.2e-05 Score=58.76 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=49.6
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCC------CCc
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQS------IYS 94 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 94 (161)
..+.+|++++|+|+..+.. ...+...+. ..+.++|+||+|+.+... ........+...+.... ..+
T Consensus 165 v~~~~d~vl~v~d~~~~~~--~~~i~~~i~---~~~~ivvlNK~Dl~~~~~---~s~~~~~~l~~a~~l~~~~~~~~~~~ 236 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDE--LQGIKKGIF---ELADMIAVNKADDGDGER---RASAAASEYRAALHILTPPSATWTPP 236 (337)
T ss_dssp HHTTSSEEEEEECSCC--------CCTTHH---HHCSEEEEECCSTTCCHH---HHHHHHHHHHHHHTTBCCSBTTBCCC
T ss_pred HHhhCCEEEEEEcCCCccc--HHHHHHHHh---ccccEEEEEchhccCchh---HHHHHHHHHHHHHHhccccccCCCCC
Confidence 4478999999999864321 000100011 256688899999865310 00000111111111001 246
Q ss_pred eeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 95 SPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 95 ~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
++++||+++ .|+++|++.|.++.+
T Consensus 237 vl~~Sal~g-----------------~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 237 VVTISGLHG-----------------KGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEBTTTT-----------------BSHHHHHHHHHHHHH
T ss_pred EEEEeCCCC-----------------CCHHHHHHHHHHHHH
Confidence 788999998 889998888877654
No 199
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.50 E-value=6.2e-05 Score=54.48 Aligned_cols=92 Identities=11% Similarity=-0.061 Sum_probs=56.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
......+|.+++|+|..++....+ ..+...+.. ..+.|+++|+||+|+.... .... +....+... .+.+.
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~--~~~~-~~a~~l~~~----~~~~~ 144 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPT-DEARAFAEK----NNLSF 144 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCH-HHHHHHHHH----TTCEE
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc--CcCH-HHHHHHHHH----cCCeE
Confidence 445578999999999876543211 122222221 1368999999999996431 1111 111222221 24567
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
+.+||+++ .|++++.+.|.+.+
T Consensus 145 ~d~Sal~~-----------------~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 145 IETSALDS-----------------TNVEEAFKNILTEI 166 (199)
T ss_dssp EECCTTTC-----------------TTHHHHHHHHHHHH
T ss_pred EEEeCCCC-----------------CCHHHHHHHHHHHH
Confidence 77899988 89999999887765
No 200
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.49 E-value=3.6e-05 Score=55.13 Aligned_cols=40 Identities=5% Similarity=-0.164 Sum_probs=28.1
Q ss_pred cCHHHHHHHHHhHhhcCC---CCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKD---IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~---~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+..+.+.+.++..... .....+|+++|.+|||||||+.
T Consensus 24 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 24 RKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp TBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHH
Confidence 456777777777654321 2345899999999999999974
No 201
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.42 E-value=3.3e-05 Score=61.84 Aligned_cols=104 Identities=10% Similarity=0.015 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCC---------CCc--HHHHHHHhCC---CCCcEEEEeecCCCCCcccc-------
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMG---------TRC--KVAEDLVVGT---PGKKLVIVINKAGKPSTKIQ------- 72 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~---------~~~--~~i~~~l~~~---~~k~~ilVlNK~Dl~~~~~~------- 72 (161)
++.+|....+.+|.+|+|+|.++... ... ..+.+.+... .+.|+|+|+||+|+...+..
T Consensus 206 ~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~ 285 (353)
T 1cip_A 206 ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285 (353)
T ss_dssp GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGT
T ss_pred hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhc
Confidence 55677778899999999999987421 111 1122222221 36899999999998532100
Q ss_pred -----c-ccHHHHHHHHhh-h---hcc---CCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhh
Q psy8220 73 -----S-GSMAQIFQTWIP-Y---NSI---QSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTR 135 (161)
Q Consensus 73 -----~-~~~~~~~~~~~~-~---~~~---~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~ 135 (161)
. ... +....|.. . +.. ......+..||+++ .|+.++.+.+.+.+.
T Consensus 286 fp~~~g~~~~-~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~-----------------~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 286 YPEYAGSNTY-EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT-----------------KNVQFVFDAVTDVII 343 (353)
T ss_dssp CTTCCSCSCH-HHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH-----------------HHHHHHHHHHHHHHH
T ss_pred ccccCCCCCH-HHHHHHHHHHHHHhhcccCCCceEEEEEECcCc-----------------hhHHHHHHHHHHHHH
Confidence 0 011 12233332 1 110 12334677888887 889999888876653
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.39 E-value=0.00034 Score=51.39 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=39.7
Q ss_pred CCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 54 GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 54 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+.|.++|+||+|+.+.. .... +....+...+. ...+++.+||+++ .|+++|.+.|.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~--~~~~-~~~~~~~~~~~--~~~~~~~~Sa~~g-----------------~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 164 KTADLIVINKIDLADAV--GADI-KKMENDAKRIN--PDAEVVLLSLKTM-----------------EGFDKVLEFIEKS 221 (226)
T ss_dssp TTCSEEEEECGGGHHHH--TCCH-HHHHHHHHHHC--TTSEEEECCTTTC-----------------TTHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchh--HHHH-HHHHHHHHHhC--CCCeEEEEEecCC-----------------CCHHHHHHHHHHH
Confidence 36779999999986420 0011 22233333332 2457889999999 9999999998776
Q ss_pred hh
Q psy8220 134 TR 135 (161)
Q Consensus 134 ~~ 135 (161)
+.
T Consensus 222 ~~ 223 (226)
T 2hf9_A 222 VK 223 (226)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 203
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.39 E-value=8e-05 Score=62.42 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHhHhhc----CC--CCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRN----KD--IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~----~~--~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|+..+...+++.... .. ....++|++||.||||||||+.
T Consensus 14 ~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~ 59 (535)
T 3dpu_A 14 QGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLK 59 (535)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHH
T ss_pred hCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHH
Confidence 5788888888776651 11 2346999999999999999974
No 204
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.35 E-value=0.00085 Score=52.47 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCCCCCc-HHHH---HHHhC---CCCCcEEEEeec-CCCCCcccccccHHHHHHHHh
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPMGTRC-KVAE---DLVVG---TPGKKLVIVINK-AGKPSTKIQSGSMAQIFQTWI 84 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~~~~~-~~i~---~~l~~---~~~k~~ilVlNK-~Dl~~~~~~~~~~~~~~~~~~ 84 (161)
.++.+|+...+.+|.+|||||+.+...... .++. ..+.+ ..+.|+++..|| -|+... . .. ..+....
T Consensus 199 ~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A-m---s~-~EI~e~L 273 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-M---PC-FYLAHEL 273 (312)
T ss_dssp CCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB-C---CH-HHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC-C---CH-HHHHHHc
Confidence 467788888899999999999987643211 1221 22211 146899999997 587543 0 11 1222222
Q ss_pred hhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 85 PYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 85 ~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
..-......-+.+.||.+| .|+.+=+++|.+.+..
T Consensus 274 ~L~~l~r~W~Iq~csA~tG-----------------eGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 274 HLNLLNHPWLVQDTEAETL-----------------TGFLNGIEWILEEVES 308 (312)
T ss_dssp TGGGGCSCEEEEEEETTTC-----------------TTHHHHHHHHHHHSCC
T ss_pred CCccCCCcEEEEecccCCC-----------------cCHHHHHHHHHHHHHh
Confidence 1111012344788999999 9999999998776543
No 205
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.34 E-value=8e-05 Score=59.78 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhccEEEEEEeCCCCC---------CCCc--HHHHHHHhCC---CCCcEEEEeecCCCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDARDPM---------GTRC--KVAEDLVVGT---PGKKLVIVINKAGKP 67 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~~~~---------~~~~--~~i~~~l~~~---~~k~~ilVlNK~Dl~ 67 (161)
..+..|....+.++.+|+|+|.++.. .+.. ..+.+.+... .+.|+|+++||+|+.
T Consensus 213 ~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 213 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp -----CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhh
Confidence 45667777788999999999998731 1111 1122222221 368999999999985
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.28 E-value=6e-05 Score=60.08 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=17.8
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
....|+++|+||+|||||+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln 92 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIE 92 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHH
Confidence 35899999999999999974
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.27 E-value=0.00019 Score=56.06 Aligned_cols=98 Identities=10% Similarity=0.013 Sum_probs=45.6
Q ss_pred hccEEEEEEeCCC-CCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 24 AADVILEVVDARD-PMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 24 ~aDviL~VvD~~~-~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
+|+++|++.+++. .+...+..+...+. .+.++++|+||+|+.... +.....+...+.+. ..+.+++.+||++
T Consensus 126 ra~~ll~ldePt~~~Ld~~~~~~l~~l~--~~~~iilV~~K~Dl~~~~----e~~~~~~~~~~~~~-~~~~~~~e~Sa~~ 198 (301)
T 2qnr_A 126 RVHCCFYFISPFGHGLKPLDVAFMKAIH--NKVNIVPVIAKADTLTLK----ERERLKKRILDEIE-EHNIKIYHLPDAE 198 (301)
T ss_dssp CCCEEEEEECSSSSSCCHHHHHHHHHHT--TTSCEEEEECCGGGSCHH----HHHHHHHHHHHHHH-HTTCCCCCCC---
T ss_pred hhhheeeeecCcccCCCHHHHHHHHHHH--hcCCEEEEEEeCCCCCHH----HHHHHHHHHHHHHH-HcCCeEEecCCcc
Confidence 3456777776543 24333333333332 357999999999997641 11000011112222 1356778899887
Q ss_pred CCCcchhhhhhhhccccccCHHHHHHHHHhHhhcCCCCCceEEEEEeec
Q psy8220 103 QKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNKDIKTSITVGVVGEC 151 (161)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~p 151 (161)
+ |++++...+.+.+... +..++||..
T Consensus 199 ~------------------~v~e~f~~l~~~i~~~-----~p~avigs~ 224 (301)
T 2qnr_A 199 S------------------DEDEDFKEQTRLLKAS-----IPFSVVGSN 224 (301)
T ss_dssp ------------------------CHHHHHHHHTT-----CSEECCCCC
T ss_pred c------------------cccHHHHHHHHHhhcC-----CCceEECCC
Confidence 5 5666666655544432 235566643
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.25 E-value=0.00017 Score=58.93 Aligned_cols=73 Identities=8% Similarity=-0.017 Sum_probs=39.3
Q ss_pred hccEEEEEEeCC-CCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecC
Q psy8220 24 AADVILEVVDAR-DPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRS 102 (161)
Q Consensus 24 ~aDviL~VvD~~-~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 102 (161)
++|++|++++++ .++...+..+.+.+. .+.|+|+|+||+|+.... +.........+.+.. .+.+++.+|+.+
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~~~lk~L~--~~v~iIlVinK~Dll~~~----ev~~~k~~i~~~~~~-~~i~~~~~sa~~ 210 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDIEFMKRLH--EKVNIIPLIAKADTLTPE----ECQQFKKQIMKEIQE-HKIKIYEFPETD 210 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHHHHHHHHT--TTSEEEEEEESTTSSCHH----HHHHHHHHHHHHHHH-HTCCCCCCC---
T ss_pred CeeEEEEEecCcccCCCHHHHHHHHHHh--ccCcEEEEEEcccCccHH----HHHHHHHHHHHHHHH-cCCeEEeCCCCC
Confidence 356688887765 455555545555564 378999999999998751 111100111222221 256678889887
Q ss_pred C
Q psy8220 103 Q 103 (161)
Q Consensus 103 ~ 103 (161)
+
T Consensus 211 ~ 211 (418)
T 2qag_C 211 D 211 (418)
T ss_dssp -
T ss_pred C
Confidence 7
No 209
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.18 E-value=9.5e-05 Score=62.96 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=17.7
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..+|+|+|.||||||||++
T Consensus 37 ~~~~VaivG~pnvGKStLiN 56 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMN 56 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44899999999999999974
No 210
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.18 E-value=3e-05 Score=64.50 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.7
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+++|++||.||||||||+.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln 261 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLN 261 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHH
T ss_pred CCCEEEEECcCCCcHHHHHH
Confidence 34899999999999999974
No 211
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.17 E-value=5.6e-05 Score=62.82 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=17.8
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+++|+++|.||||||||++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln 251 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLN 251 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45899999999999999974
No 212
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00039 Score=49.60 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHhhhccEEEEEEeCC-CCCCC--CcHHHHHHHh-----CCCCCcEEEEeecCCCCCc
Q psy8220 19 RSVVEAADVILEVVDAR-DPMGT--RCKVAEDLVV-----GTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~-~~~~~--~~~~i~~~l~-----~~~~k~~ilVlNK~Dl~~~ 69 (161)
...+..+|++++|+|++ ++..- ....+...+. ...+.|+++|+||+|+.+.
T Consensus 113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 44556799999999998 32110 0112222221 1036899999999999865
No 213
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=9.3e-05 Score=54.81 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=17.6
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
..++|++||.||||||||+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~ 55 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLAN 55 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34899999999999999974
No 214
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.12 E-value=0.00013 Score=58.55 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.0
Q ss_pred ceE-EEEEeecCCCcccccC
Q psy8220 142 SIT-VGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~-v~vvG~pNVGKSsl~~ 160 (161)
+++ |++||.||||||||+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln 197 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFN 197 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 355 9999999999999974
No 215
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.07 E-value=0.00026 Score=50.98 Aligned_cols=91 Identities=11% Similarity=-0.052 Sum_probs=54.8
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCc-HHHHHHHhC--CCCCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCce
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRC-KVAEDLVVG--TPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSS 95 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~-~~i~~~l~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (161)
......+|.+++|.|..+...-.+ ..+...+.. ..+.|+++|+||+|+.+.. .... +....+... .+.+.
T Consensus 96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~--~~~~-~~a~~l~~~----~~~~~ 168 (191)
T 1oix_A 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPT-DEARAFAEK----NGLSF 168 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--CSCH-HHHHHHHHH----TTCEE
T ss_pred HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--ccCH-HHHHHHHHH----cCCEE
Confidence 345577899999999876532111 112222221 1368999999999986431 1111 111222221 24567
Q ss_pred eEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhH
Q psy8220 96 PRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNY 133 (161)
Q Consensus 96 i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~ 133 (161)
+.+||+++ .|++++.+.|.+.
T Consensus 169 ld~Sald~-----------------~~v~~l~~~l~~~ 189 (191)
T 1oix_A 169 IETSALDS-----------------TNVEAAFQTILTE 189 (191)
T ss_dssp EECCTTTC-----------------TTHHHHHHHHHHH
T ss_pred EEEeCCCC-----------------CCHHHHHHHHHHH
Confidence 77899988 8999999988764
No 216
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.03 E-value=0.00035 Score=53.12 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=17.9
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
..++|+++|.+|||||||+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin 54 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVN 54 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45899999999999999974
No 217
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.03 E-value=0.0016 Score=51.56 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=34.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHH---hC-CCCCcEEEEeecCCCCCc
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLV---VG-TPGKKLVIVINKAGKPST 69 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l---~~-~~~k~~ilVlNK~Dl~~~ 69 (161)
......|+.+++|+|+++.....-..+.+++ .. ..+.|+++|.||+|+.++
T Consensus 67 ~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 67 ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 3456899999999999876211112222222 11 147899999999999875
No 218
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.02 E-value=0.00035 Score=53.30 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=17.9
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
..++|+++|.+|||||||+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin 57 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVN 57 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35899999999999999974
No 219
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.00 E-value=7.4e-05 Score=61.84 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.8
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+++|+++|.||||||||++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln 242 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLN 242 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45899999999999999974
No 220
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.90 E-value=0.0005 Score=50.46 Aligned_cols=19 Identities=5% Similarity=0.066 Sum_probs=17.0
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
..+|+++|.||||||||+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~ 56 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIE 56 (226)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4789999999999999974
No 221
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.86 E-value=0.00052 Score=60.68 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=39.0
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP 67 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~ 67 (161)
..++..+|.+|+|+|+.++...+...+...+.. .+.|+++|+||+|+.
T Consensus 116 ~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 116 TAALRVTDGALVVVDTIEGVCVQTETVLRQALG-ERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-TTCEEEEEEECHHHH
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCCCeEEEEECCCcc
Confidence 678899999999999998876666555444444 579999999999986
No 222
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.86 E-value=0.00043 Score=59.95 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=23.2
Q ss_pred HHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..|...+..... ..++|+|+|.||+|||||+.
T Consensus 55 l~~L~~~~~~l~~-----~~~~V~VvG~~naGKSSLlN 87 (695)
T 2j69_A 55 IEDITIASKNLQQ-----GVFRLLVLGDMKRGKSTFLN 87 (695)
T ss_dssp HHHHHHHHHHHHH-----CCEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHhcc-----CCCEEEEECCCCCCHHHHHH
Confidence 3444444444433 24899999999999999974
No 223
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.84 E-value=0.00017 Score=57.43 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=15.7
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
+|++||.||||||||+.
T Consensus 160 ~V~lvG~~nvGKSTLln 176 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLS 176 (342)
T ss_dssp CEEEESSTTSSHHHHHH
T ss_pred eeeeeCCCCCCHHHHHH
Confidence 69999999999999974
No 224
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.81 E-value=0.00076 Score=53.12 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=44.9
Q ss_pred CcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHh
Q psy8220 55 KKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYT 134 (161)
Q Consensus 55 k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~ 134 (161)
....+|++|-|..++ +.++. .+. .+.|++..+..+. .++..|..+|...+
T Consensus 80 ~~P~IIltrg~~~pe--------elie~-A~~----~~IPVL~T~~~ts-----------------~~~~~l~~~l~~~~ 129 (314)
T 1ko7_A 80 ETPAIIVTRDLEPPE--------ELIEA-AKE----HETPLITSKIATT-----------------QLMSRLTTFLEHEL 129 (314)
T ss_dssp TCCCEEECTTCCCCH--------HHHHH-HHH----TTCCEEECCSCHH-----------------HHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCH--------HHHHH-HHH----CCCeEEEECCchh-----------------HHHHHHHHHHHHhh
Confidence 344558889998765 32222 111 2566665554443 55566666655433
Q ss_pred hcC----C---CCCceEEEEEeecCCCcccccC
Q psy8220 135 RNK----D---IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 135 ~~~----~---~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
... + .-.+.-|++.|.+++||||+++
T Consensus 130 ~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 130 ARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp CEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred ccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 211 1 0124679999999999999875
No 225
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.77 E-value=0.00072 Score=52.28 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
..++|+++|.||||||||+
T Consensus 154 ~~~~i~i~G~~~~GKssli 172 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLL 172 (332)
T ss_dssp TCEEEEEEESTTSSHHHHH
T ss_pred ceeEEEEECCCCCChHHHH
Confidence 3589999999999999997
No 226
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.00043 Score=54.54 Aligned_cols=19 Identities=11% Similarity=-0.004 Sum_probs=17.2
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
.++|+|+|.||||||||+.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~ 183 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILY 183 (329)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred cceEEEECCCCccHHHHHH
Confidence 4799999999999999974
No 227
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.62 E-value=0.00044 Score=57.16 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=17.8
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
..++|++||.||||||||+.
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~ 340 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILY 340 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHH
T ss_pred cceeEEEEcCCCCCHHHHHH
Confidence 35899999999999999974
No 228
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.53 E-value=0.0014 Score=52.02 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
...+|+++|.||||||||+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIE 97 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 35789999999999999973
No 229
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.52 E-value=0.001 Score=50.71 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=31.1
Q ss_pred hhccEEEEEEeCCCC-CCCCcHHHHHHHhCCCC----CcEEEEeecCCCCCc
Q psy8220 23 EAADVILEVVDARDP-MGTRCKVAEDLVVGTPG----KKLVIVINKAGKPST 69 (161)
Q Consensus 23 ~~aDviL~VvD~~~~-~~~~~~~i~~~l~~~~~----k~~ilVlNK~Dl~~~ 69 (161)
..+|++|+|+|.... +...+..+.+.+....+ .|+++|+||+|+.++
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 479999999887542 22233344444432112 699999999999765
No 230
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.47 E-value=0.0014 Score=53.72 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=31.5
Q ss_pred EEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 27 VILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 27 viL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
++++|+|+..++...|.++.+.+. .+.|+|+|+||+|..++
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~--~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD--SKVNIIPIIAKADAISK 191 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC--SCSEEEEEESCGGGSCH
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh--hCCCEEEEEcchhccch
Confidence 578888998888877777777775 47999999999998876
No 231
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.44 E-value=0.0014 Score=53.39 Aligned_cols=18 Identities=28% Similarity=0.163 Sum_probs=16.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..++++|.+|+|||||++
T Consensus 70 ~~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFIN 87 (413)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 689999999999999974
No 232
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.40 E-value=0.00048 Score=55.07 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhccEEEEEEeCCC-------C--CCCCc--HHHHHHHhCC---CCCcEEEEeecCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARD-------P--MGTRC--KVAEDLVVGT---PGKKLVIVINKAGKP 67 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~-------~--~~~~~--~~i~~~l~~~---~~k~~ilVlNK~Dl~ 67 (161)
.+.+|......+|.+|+|+|.++ . ..+.. ..+.+.+... .+.|+++|.||+||.
T Consensus 196 ~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 196 ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 263 (354)
T ss_dssp GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchh
Confidence 45666777889999999999872 1 11111 1122222221 368999999999984
No 233
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.21 E-value=0.0031 Score=49.85 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCC-------CCCCC--Cc--HHHHHHHhCC---CCCcEEEEeecCCCCC
Q psy8220 12 VVVQEIERSVVEAADVILEVVDAR-------DPMGT--RC--KVAEDLVVGT---PGKKLVIVINKAGKPS 68 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~-------~~~~~--~~--~~i~~~l~~~---~~k~~ilVlNK~Dl~~ 68 (161)
+..+.+|....+.++.+|+|+|.+ +.... .. ..+.+.+... .+.|+++++||+|+..
T Consensus 178 e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 178 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHH
T ss_pred hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhh
Confidence 456778888889999999999875 21111 11 1122222221 3689999999999854
No 234
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.18 E-value=0.001 Score=54.06 Aligned_cols=55 Identities=9% Similarity=-0.024 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCC---------CCCCc--HHHHHHHhCC---CCCcEEEEeecCCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDP---------MGTRC--KVAEDLVVGT---PGKKLVIVINKAGKPS 68 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~---------~~~~~--~~i~~~l~~~---~~k~~ilVlNK~Dl~~ 68 (161)
.+.+|......|+.+|+|+|.++. ..+.. ..+.+.+... .+.|+++|.||+||..
T Consensus 230 ~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 230 ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence 456677778999999999999871 11111 1122223221 3689999999999843
No 235
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0012 Score=56.36 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=18.3
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..++|++||.||||||||+.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin 185 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMG 185 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHH
Confidence 346899999999999999973
No 236
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.10 E-value=0.0013 Score=55.46 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=17.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
..+|+|+|.||||||||++
T Consensus 65 ~~~V~vvG~~n~GKSTLIN 83 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQ 83 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4799999999999999974
No 237
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.03 E-value=0.029 Score=44.99 Aligned_cols=76 Identities=12% Similarity=-0.068 Sum_probs=41.0
Q ss_pred CCcEEEEeecCC--CCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcchh----hhhhhhc-cccccCHHHH
Q psy8220 54 GKKLVIVINKAG--KPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQTE----RDLKAIN-VSSCVGAELL 126 (161)
Q Consensus 54 ~k~~ilVlNK~D--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~~----~~~~~~~-~~~~~g~~~L 126 (161)
.+|+++|.||.| +.... +. ...+.+..|... .+.+++++||+.......+ ...++.. .....|++.|
T Consensus 201 ~KPvi~v~N~~e~d~~~~~-~n-~~~~~v~~~a~~----~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~l 274 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGR-GN-PQVEAVRRKALE----EGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRL 274 (368)
T ss_dssp GSCEEEEEECCGGGTTTCT-TC-HHHHHHHHHHHH----HTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHH
T ss_pred cCCeEEeccccHHhhcccc-hh-hHHHHHHHHHHH----cCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHH
Confidence 489999999997 33210 00 111223333222 2467899999874211111 1122221 2235789999
Q ss_pred HHHHHhHhh
Q psy8220 127 MLLLGNYTR 135 (161)
Q Consensus 127 ~~~l~~~~~ 135 (161)
.+...+.+.
T Consensus 275 i~~~~~~L~ 283 (368)
T 2dby_A 275 ARAGYRALD 283 (368)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888877764
No 238
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.03 E-value=0.0028 Score=48.01 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHHHHHHh--hhccEEEEEEeCCCC-CCCCcHHHHHHHhCC-C---CCcEEEEeecCCCCCc
Q psy8220 12 VVVQEIERSVV--EAADVILEVVDARDP-MGTRCKVAEDLVVGT-P---GKKLVIVINKAGKPST 69 (161)
Q Consensus 12 ~~~~~~~~~~i--~~aDviL~VvD~~~~-~~~~~~~i~~~l~~~-~---~k~~ilVlNK~Dl~~~ 69 (161)
.+++.+ ++.+ ..+|++|+|+|...+ ....+..+.+.+... . .+|+++|+||+|+.+.
T Consensus 103 ~~~~~i-~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 103 QALELI-KGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHH-HHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHH-HHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 444445 2333 378999999877543 222333455444431 1 2599999999999643
No 239
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.95 E-value=0.0019 Score=51.11 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=17.5
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..++++|.||+|||||+.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~ 73 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTID 73 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45789999999999999974
No 240
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0044 Score=49.94 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC----CCCcEEEEeecCCCC
Q psy8220 14 VQEIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT----PGKKLVIVINKAGKP 67 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~----~~k~~ilVlNK~Dl~ 67 (161)
.++. ...+.+||++++|+|+++|... ...+...+... ..+|.++++||+|..
T Consensus 140 g~~~-l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 140 GKQV-IAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHH-HHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHH-HHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3555 6888999999999999987532 12233333221 368899999999963
No 241
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=95.86 E-value=0.0025 Score=54.17 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=17.6
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
..++|+++|.||+|||||+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~ 195 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLG 195 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHH
Confidence 45899999999999999973
No 242
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.83 E-value=0.0025 Score=50.37 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.3
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
....++++|.||+|||||+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~ 74 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLE 74 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 45789999999999999963
No 243
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.78 E-value=0.0015 Score=53.27 Aligned_cols=18 Identities=33% Similarity=0.198 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.|++||.||+|||||+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~ 175 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLA 175 (416)
T ss_dssp CSEEEECCGGGCHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 468999999999999974
No 244
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.70 E-value=0.0031 Score=50.11 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhhccEEEEEEeCCCCC---------CCCc---HHHHHHHhCC--CCCcEEEEeecCCCCC
Q psy8220 12 VVVQEIERSVVEAADVILEVVDARDPM---------GTRC---KVAEDLVVGT--PGKKLVIVINKAGKPS 68 (161)
Q Consensus 12 ~~~~~~~~~~i~~aDviL~VvD~~~~~---------~~~~---~~i~~~l~~~--~~k~~ilVlNK~Dl~~ 68 (161)
+..+.+|....+.++.+|+|+|.++.. .... ..+...+... .+.|++++.||+|+..
T Consensus 172 e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 172 RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 557888888899999999999997311 1111 1122222221 3689999999999854
No 245
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.65 E-value=0.03 Score=46.78 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=29.3
Q ss_pred hccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcE-EEEeecCCCCCc
Q psy8220 24 AADVILEVVDARDPMGTRCKVAEDLVVGTPGKKL-VIVINKAGKPST 69 (161)
Q Consensus 24 ~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~-ilVlNK~Dl~~~ 69 (161)
.+|.+++|+|+..+.. .......+.+ ..|+ .+|+||+|....
T Consensus 213 ~pd~vllVvDa~~g~~--~~~~a~~~~~--~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--CEAQAKAFKD--KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp CCSEEEEEEETTCCTT--HHHHHHHHHH--HHCCCCEEEECTTSCCC
T ss_pred cCceEEEEEecccccc--HHHHHHHHHh--hcCceEEEEeCCccccc
Confidence 7999999999987642 3333333432 2674 899999998754
No 246
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.57 E-value=0.0028 Score=51.87 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.++++||.+|+|||||+.
T Consensus 43 ~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMD 60 (427)
T ss_dssp EEEEEECSTTSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999974
No 247
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.43 E-value=0.0024 Score=51.02 Aligned_cols=19 Identities=32% Similarity=0.253 Sum_probs=17.1
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
.++|++||.+|||||||+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln 55 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLIN 55 (361)
T ss_dssp EECEEECCCTTSCHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 4789999999999999974
No 248
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.34 E-value=0.0062 Score=43.14 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=25.6
Q ss_pred HHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+..+.+.+++..-....+-.++++|.|++|||||+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 44555666666643322234578999999999999973
No 249
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.27 E-value=0.019 Score=43.93 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=36.3
Q ss_pred hhhccEEEEEEeCC-CCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 22 VEAADVILEVVDAR-DPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 22 i~~aDviL~VvD~~-~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+.+|++.++++|.. .++...+..+.+.+.+ . .++|+|+||+|....
T Consensus 109 iaRal~~lllldep~~gL~~lD~~~l~~L~~-~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 109 DTRVHCCLYFISPTGHSLRPLDLEFMKHLSK-V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp CCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-T-SEEEEEETTGGGSCH
T ss_pred hheeeeeeEEEecCCCcCCHHHHHHHHHHHh-c-CcEEEEEeccccCCH
Confidence 34578999999954 6677777777777776 4 999999999998876
No 250
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.15 E-value=0.012 Score=49.19 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=16.3
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..|+++|.|||||||++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp --EEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35789999999999999863
No 251
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.11 E-value=0.013 Score=46.08 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=25.2
Q ss_pred HHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 124 ELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 124 ~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..|......+........+.-+||+|.+++|||||+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHH
Confidence 3444444445544333456889999999999999863
No 252
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=94.90 E-value=0.0048 Score=50.80 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
-.-|+|+|.||+|||||.+
T Consensus 67 v~vVsV~G~~~~GKStLLN 85 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMD 85 (447)
T ss_dssp EEEEEEEESTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3678999999999999864
No 253
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.68 E-value=0.019 Score=46.95 Aligned_cols=19 Identities=11% Similarity=0.003 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+..|+++|.|||||||++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCCEEEECCSSSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999999863
No 254
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.68 E-value=0.013 Score=49.07 Aligned_cols=40 Identities=10% Similarity=-0.171 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+|.+.-++.|.+.+..........|+|+|+++||||||+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~ 170 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIAS 170 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHH
Confidence 5766666666665543222233578999999999999974
No 255
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.60 E-value=0.017 Score=40.21 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.++.++.+.+.+... ..-.+.+.|.|++|||+|+.
T Consensus 25 ~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CSCHHHHHHHHHHHTSS---SSCEEEEECCTTSCHHHHHH
T ss_pred ccchHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHH
Confidence 34455555555554332 22458899999999999874
No 256
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.47 E-value=0.38 Score=38.37 Aligned_cols=75 Identities=5% Similarity=-0.146 Sum_probs=41.2
Q ss_pred CCcEEEEeecCCCCCcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcch----hhhhhhhc-cccccCHHHHHH
Q psy8220 54 GKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQT----ERDLKAIN-VSSCVGAELLML 128 (161)
Q Consensus 54 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~~----~~~~~~~~-~~~~~g~~~L~~ 128 (161)
.+|+++|.||.|..-.. . ...+.+..|... .+.+++++||+....-.. ....++.. .....|++.|.+
T Consensus 199 ~KPvi~v~N~~e~~~~~--n-~~~~~v~~~~~~----~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~ 271 (363)
T 1jal_A 199 LKPTMYIANVNEDGFEN--N-PYLDRVREIAAK----EGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIR 271 (363)
T ss_dssp TSCEEEEEECCTTCSSS--C-HHHHHHHHHHHH----TTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHH
T ss_pred CCcEEEEEecccccccc--c-HHHHHHHHHHHH----cCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHH
Confidence 59999999999964210 0 111223333322 256789999875311111 01122221 223578999999
Q ss_pred HHHhHhh
Q psy8220 129 LLGNYTR 135 (161)
Q Consensus 129 ~l~~~~~ 135 (161)
...+.+.
T Consensus 272 ~~~~~L~ 278 (363)
T 1jal_A 272 AGYALLN 278 (363)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8877764
No 257
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=94.43 E-value=0.02 Score=50.14 Aligned_cols=40 Identities=20% Similarity=0.050 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHhH---hhcCCC---CCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNY---TRNKDI---KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~---~~~~~~---~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|++.|...+.++ +..-+. -...+|+|||.+|+|||||+.
T Consensus 24 ~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSlln 69 (772)
T 3zvr_A 24 RGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLE 69 (772)
T ss_dssp -CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHH
Confidence 5655555554443 332221 123599999999999999974
No 258
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=94.31 E-value=0.0086 Score=49.37 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=17.3
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
..++|+++|.+|+|||||+
T Consensus 42 ~~~~i~iiG~vd~GKSTLi 60 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLG 60 (467)
T ss_dssp EEEEEEEEECGGGTHHHHH
T ss_pred CeeEEEEEECCCCCHHHHH
Confidence 3589999999999999997
No 259
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.16 E-value=0.13 Score=41.90 Aligned_cols=97 Identities=10% Similarity=-0.069 Sum_probs=53.8
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCC--Cc------ccccccHHHHHHHHhh-hhccC--
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKP--ST------KIQSGSMAQIFQTWIP-YNSIQ-- 90 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~--~~------~~~~~~~~~~~~~~~~-~~~~~-- 90 (161)
+.+.|..+. +++.. ...++..+...+.. .++|+++|+||.|+. ++ ......+.+.+..+.. .+.+.
T Consensus 146 L~~~~~~~~-lS~G~-~~kqrv~la~aL~~-~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 146 FYEYDFFII-ISATR-FKKNDIDIAKAISM-MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp GGGCSEEEE-EESSC-CCHHHHHHHHHHHH-TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccCCeEE-eCCCC-ccHHHHHHHHHHHh-cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 556677666 77754 23445566666665 579999999999964 10 0001111122222210 01111
Q ss_pred CCCceeEEeecCCCCcchhhhhhhhccccccCHHHHHHHHHhHhhc
Q psy8220 91 SIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRN 136 (161)
Q Consensus 91 ~~~~~i~iSa~~~~~~~~~~~~~~~~~~~~~g~~~L~~~l~~~~~~ 136 (161)
....++++|+... ...|+++|.+.|.+.++.
T Consensus 223 ~~~~iiliSsh~l---------------~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 223 AEPPIFLLSNKNV---------------CHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp SSCCEEECCTTCT---------------TSTTHHHHHHHHHHHSCG
T ss_pred CCCcEEEEecCcC---------------CccCHHHHHHHHHHhCcc
Confidence 1234688898432 116789999988877764
No 260
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.15 E-value=0.032 Score=43.29 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=17.5
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..+||+|.+++|||||+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45789999999999999863
No 261
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.00 E-value=0.022 Score=39.69 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=24.0
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.+.+.+... ..-.+.+.|.|++|||+|+.
T Consensus 25 ~g~~~~~~~l~~~l~~~---~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRR---TKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp CSCHHHHHHHHHHHTSS---SSCEEEEESCGGGCHHHHHH
T ss_pred hcchHHHHHHHHHHhCC---CCCceEEECCCCCCHHHHHH
Confidence 34455555555554332 22467899999999999864
No 262
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.60 E-value=0.04 Score=40.84 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=26.8
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
...-.+...|+.++... ++.-.+.+.|.||+||||++.
T Consensus 39 ~~~~~f~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 39 IEFITFLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp CCHHHHHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHH
Confidence 55666677777777542 222358899999999998863
No 263
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.50 E-value=0.038 Score=39.35 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.++..+.+.+.+.... .-.+.+.|.|++|||+|+.
T Consensus 20 ~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 20 VGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CSCHHHHHHHHHHHHTTC---CCCEEEECSTTSSHHHHHH
T ss_pred cCcHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHH
Confidence 344556666666655432 1138999999999999863
No 264
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.42 E-value=0.024 Score=43.46 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=17.2
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..|+|.|.|++||||++.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45789999999999999863
No 265
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.41 E-value=0.049 Score=42.92 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.++++|.+++||||++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45789999999999999863
No 266
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.23 E-value=0.023 Score=46.66 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+..|.++|.|++||||+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~ 57 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISK 57 (469)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4789999999999999863
No 267
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.17 E-value=0.034 Score=46.54 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+.... ...--|+|.|++++|||||+.
T Consensus 127 vGR~~~l~~L~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~ 165 (591)
T 1z6t_A 127 VTRKKLVNAIQQKLSKLK-GEPGWVTIHGMAGCGKSVLAA 165 (591)
T ss_dssp CCCHHHHHHHHHHHTTST-TSCEEEEEECCTTSSHHHHHH
T ss_pred cccHHHHHHHHHHHhccc-CCCceEEEEcCCCCCHHHHHH
Confidence 677888888877765321 123468899999999999974
No 268
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.07 E-value=0.061 Score=41.79 Aligned_cols=20 Identities=10% Similarity=-0.059 Sum_probs=17.2
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.+++||.+++|||||+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45689999999999999863
No 269
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.96 E-value=0.047 Score=39.29 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+.... .+--+.+.|.|++|||||+.
T Consensus 26 ~g~~~~~~~l~~~l~~~~--~~~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp CSCHHHHHHHHHHHHHTC--CCSEEEEECSTTSCHHHHHH
T ss_pred hCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHH
Confidence 455666666666554321 11257889999999999864
No 270
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=92.80 E-value=0.069 Score=49.04 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.3
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..++|+++|.+|+|||||+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLIn 314 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTA 314 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHH
Confidence 345899999999999999973
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.78 E-value=0.61 Score=38.25 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=30.2
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+-.+|.+++|+|+..+. ........+.+ .-....+|+||+|....
T Consensus 210 ~~~pd~vlLVvDA~~gq--~a~~~a~~f~~-~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 210 VIHPHEVILVIDGTIGQ--QAYNQALAFKE-ATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HHCCSEEEEEEEGGGGG--GHHHHHHHHHH-SCTTEEEEEECCSSCSS
T ss_pred hhcCceEEEEEeCCCch--hHHHHHHHHHh-hCCCeEEEEECCCCccc
Confidence 34689999999998642 22333444443 34566789999998765
No 272
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.77 E-value=0.037 Score=42.29 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
...+.+.|.|++|||+|+.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999999873
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.77 E-value=0.075 Score=41.42 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=16.4
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+-.++++|.+++||||++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 3467899999999999986
No 274
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.72 E-value=0.032 Score=43.57 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=18.2
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+..+||+|.+++|||||+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHH
Confidence 356789999999999999974
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.71 E-value=0.08 Score=43.49 Aligned_cols=19 Identities=11% Similarity=-0.015 Sum_probs=16.9
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++..|+++|.|||||||++
T Consensus 99 ~p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECcCCCCHHHHH
Confidence 3678999999999999986
No 276
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.60 E-value=0.051 Score=41.80 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 130 LGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 130 l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+++++...+.+.+.-+.+.|.|++|||+|+.
T Consensus 24 ~k~~l~~~~~~~p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 24 TKNFLKLPNIKVPLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp HHTTSCCTTCCCCSEEEEEECTTSCHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3444433333445667888999999999864
No 277
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.59 E-value=0.072 Score=38.10 Aligned_cols=38 Identities=3% Similarity=-0.070 Sum_probs=24.6
Q ss_pred HHHHHHHHHhHhhcCCCC-CceEEEEEeecCCCcccccC
Q psy8220 123 AELLMLLLGNYTRNKDIK-TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~~~-~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+..+.+.+++...... .+..+.+.|.|++|||+|+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 344555666666543211 12468999999999999863
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.54 E-value=0.069 Score=41.33 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=16.5
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+-.++++|.+++||||++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3468999999999999986
No 279
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.37 E-value=0.074 Score=38.55 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=23.8
Q ss_pred HHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 124 ELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 124 ~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
....+.+..++... ..-.+.+.|.|++|||||+.
T Consensus 37 ~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 37 DELIGALKSAASGD---GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp HHHHHHHHHHHHTC---SCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHH
Confidence 45556666665432 23568999999999999863
No 280
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.24 E-value=0.027 Score=43.04 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=15.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--++++|.|++|||||++
T Consensus 36 ~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 468999999999999964
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.22 E-value=0.036 Score=43.34 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++|+|.+++|||||+.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 3579999999999999964
No 282
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.13 E-value=0.098 Score=41.72 Aligned_cols=20 Identities=10% Similarity=-0.059 Sum_probs=17.2
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.+++||.+++|||||+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHH
Confidence 45689999999999999863
No 283
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.05 E-value=0.055 Score=40.82 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHhHhhcC----------CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK----------DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~----------~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.++.++.|.+++... +...+..+.+.|.|++|||+|+.
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 45666666666554210 11233569999999999999874
No 284
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.01 E-value=0.04 Score=38.19 Aligned_cols=18 Identities=22% Similarity=-0.104 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|.|++|||||+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999864
No 285
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.94 E-value=0.11 Score=43.43 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=17.3
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.+++||.+++|||||+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHH
Confidence 45689999999999999974
No 286
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.69 E-value=0.1 Score=40.81 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=15.3
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.++|.|.|++|||||+.
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999999874
No 287
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.68 E-value=0.07 Score=41.03 Aligned_cols=40 Identities=15% Similarity=-0.006 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHhHhhc----------CCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRN----------KDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~----------~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+.. .+...+--+.+.|.|++|||+|+.
T Consensus 18 ~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 4556666666554321 112234568999999999999864
No 288
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.53 E-value=0.12 Score=40.48 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=15.7
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.+.|.|++|||||+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 468899999999999874
No 289
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.53 E-value=0.2 Score=40.82 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred hccEEEEEEeCCCCCCCCcHHHHHHHhCCCCC-c-EEEEeecCCCCCc
Q psy8220 24 AADVILEVVDARDPMGTRCKVAEDLVVGTPGK-K-LVIVINKAGKPST 69 (161)
Q Consensus 24 ~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k-~-~ilVlNK~Dl~~~ 69 (161)
.+|.+++|+|+..+. ........+.. .. | ..+|+||+|....
T Consensus 210 ~~d~vllVvda~~g~--~~~~~~~~~~~--~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQ--QAGIQAKAFKE--AVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CCSEEEEEEEGGGGG--GHHHHHHHHHT--TSCSCEEEEEECSSSCST
T ss_pred cCcceeEEeeccccH--HHHHHHHHHhh--cccCCeEEEEeCCCCccc
Confidence 699999999997653 11222233332 35 5 8899999998654
No 290
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.53 E-value=0.14 Score=40.11 Aligned_cols=19 Identities=11% Similarity=-0.087 Sum_probs=16.4
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+-.++++|.+++||||++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp SCEEEEEESSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567999999999999986
No 291
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.51 E-value=0.071 Score=39.73 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=15.7
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..++++|.|++|||||+.
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 458999999999999864
No 292
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.43 E-value=0.099 Score=42.94 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=26.9
Q ss_pred ccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 120 CVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 120 ~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
-.|-+..++.+.+.+... ..-.+.++|-|+||||+|+.
T Consensus 182 iiGr~~~i~~l~~~l~r~---~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHH
T ss_pred ccCcHHHHHHHHHHHhcc---CCCCeEEECCCCCCHHHHHH
Confidence 356666666666666432 22468999999999999863
No 293
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.38 E-value=0.073 Score=41.40 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHhHh-hcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYT-RNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~-~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-+...+.|.+.+ ... ..+. +++.|.|++|||||+.
T Consensus 17 vg~~~~~~~l~~~~~~~~--~~~~-~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 17 SHNEELTNFLKSLSDQPR--DLPH-LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CSCHHHHHHHHTTTTCTT--CCCC-EEEECSTTSSHHHHHH
T ss_pred cCCHHHHHHHHHHHhhCC--CCCe-EEEECCCCCCHHHHHH
Confidence 34566667777665 322 1223 8999999999999974
No 294
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.31 E-value=0.13 Score=38.57 Aligned_cols=20 Identities=10% Similarity=0.007 Sum_probs=16.9
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
....+.+.|.|++|||+|+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 44678999999999999864
No 295
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.19 E-value=0.048 Score=41.25 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.|+++|+|++||||+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 369999999999999853
No 296
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.16 E-value=0.047 Score=40.65 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=14.7
Q ss_pred EEEEeecCCCcccccC
Q psy8220 145 VGVVGECNIAGSIRDL 160 (161)
Q Consensus 145 v~vvG~pNVGKSsl~~ 160 (161)
++++|.|++|||||+.
T Consensus 52 ~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999999999999864
No 297
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.85 E-value=0.061 Score=41.84 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||+.
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4589999999999999863
No 298
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.81 E-value=0.046 Score=43.32 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=17.0
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
.-+++|+|.+++|||||+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk 188 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVN 188 (365)
T ss_dssp CEEEEEECCTTSHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHH
Confidence 4689999999999999974
No 299
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.76 E-value=0.11 Score=46.67 Aligned_cols=40 Identities=13% Similarity=0.018 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 120 CVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 120 ~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
-.|.++.++.|.+.+.... ...-.|+|+|+++||||||+.
T Consensus 126 ~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~ 165 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAA 165 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHH
T ss_pred eccHHHHHHHHHHHHhhcc-CCCCEEEEEeCCCCCHHHHHH
Confidence 4688888888888774321 123468899999999999974
No 300
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.49 E-value=0.14 Score=39.83 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=25.1
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-+...+.|...+..... + .+++.|.|++||||++.
T Consensus 28 ~g~~~~~~~L~~~i~~g~~--~-~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKL--P-HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCC--C-CEEEECSSSSSHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCC--c-eEEEECCCCCCHHHHHH
Confidence 3445666666666654321 1 28999999999999874
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.25 E-value=0.095 Score=40.58 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=15.9
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+..++++|.+|+||||++
T Consensus 98 ~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SEEEEEECSSCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567889999999999986
No 302
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.22 E-value=0.085 Score=40.08 Aligned_cols=40 Identities=8% Similarity=-0.012 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHhHhhc--------CC-CCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRN--------KD-IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~--------~~-~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+.. .. ...+.-+.+.|.|++|||||+.
T Consensus 24 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 24 AGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 4556666666654421 00 0123578999999999999874
No 303
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.22 E-value=0.08 Score=41.19 Aligned_cols=40 Identities=5% Similarity=-0.155 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHhHhhcCC-CCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKD-IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~-~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+.-++.|.+.+.... ...+--+++.|.|++|||||+.
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHH
Confidence 455555555555443210 1123468899999999999974
No 304
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.09 E-value=0.067 Score=40.50 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=14.7
Q ss_pred EEEEeecCCCcccccC
Q psy8220 145 VGVVGECNIAGSIRDL 160 (161)
Q Consensus 145 v~vvG~pNVGKSsl~~ 160 (161)
++++|.|++|||||+.
T Consensus 76 vll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCcChHHHHHH
Confidence 8999999999999864
No 305
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.05 E-value=0.21 Score=40.77 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=16.4
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+..|+++|.+||||||++
T Consensus 99 ~~~vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSV 117 (433)
T ss_dssp SSEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3568899999999999986
No 306
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.04 E-value=0.063 Score=40.43 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 36 e~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 369999999999999964
No 307
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.90 E-value=0.061 Score=40.97 Aligned_cols=19 Identities=21% Similarity=0.015 Sum_probs=16.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||+.
T Consensus 50 Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHH
Confidence 3479999999999999964
No 308
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.89 E-value=0.16 Score=39.27 Aligned_cols=40 Identities=15% Similarity=-0.017 Sum_probs=27.0
Q ss_pred cCHHHHHHHHHhHhh------c---CCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTR------N---KDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~------~---~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+. . .....+..+.+.|-|++|||+|+.
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 566777777766541 1 111234578999999999999874
No 309
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.79 E-value=0.11 Score=40.58 Aligned_cols=40 Identities=8% Similarity=-0.144 Sum_probs=25.4
Q ss_pred cCHHHHHHHHHhHhhcCC-CCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKD-IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~-~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+.... ...+-.+.+.|.|++|||||+.
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 455555666655553210 1123468899999999999874
No 310
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.70 E-value=0.069 Score=40.50 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp TCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999964
No 311
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.65 E-value=0.066 Score=39.52 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=15.3
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.++++|..++|||||..
T Consensus 37 ~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999964
No 312
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.62 E-value=0.073 Score=43.07 Aligned_cols=19 Identities=21% Similarity=-0.122 Sum_probs=15.9
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+.-|.++|.|++||||++.
T Consensus 258 ~~lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568888999999999863
No 313
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.56 E-value=0.067 Score=40.77 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 38 e~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 469999999999999964
No 314
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.53 E-value=0.073 Score=40.60 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=14.8
Q ss_pred EEEEeecCCCcccccC
Q psy8220 145 VGVVGECNIAGSIRDL 160 (161)
Q Consensus 145 v~vvG~pNVGKSsl~~ 160 (161)
++++|.|++|||||+.
T Consensus 47 vlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAK 62 (274)
T ss_dssp EEEESSTTSCHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 9999999999999964
No 315
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.46 E-value=0.12 Score=47.80 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=17.2
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-+|||||.++.|||||+.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHH
T ss_pred CCCEEEEECCCCChHHHHHH
Confidence 34589999999999999974
No 316
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.31 E-value=0.08 Score=40.31 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||+.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999964
No 317
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.30 E-value=0.072 Score=40.37 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 42 ei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 479999999999999964
No 318
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.19 E-value=0.075 Score=40.31 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..+.+.|.|++|||+|+.
T Consensus 51 ~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999999864
No 319
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.10 E-value=0.095 Score=42.91 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=16.6
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+..++++|.|||||||++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3578899999999999986
No 320
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.01 E-value=0.057 Score=42.12 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++|||..++|||||+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp TCEEEEESSSCHHHHHHHH
T ss_pred CCEEEEECCCCchHHHHHH
Confidence 3589999999999999964
No 321
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.96 E-value=0.092 Score=40.63 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=14.6
Q ss_pred EEEEeecCCCcccccC
Q psy8220 145 VGVVGECNIAGSIRDL 160 (161)
Q Consensus 145 v~vvG~pNVGKSsl~~ 160 (161)
+.+.|.|++||||++.
T Consensus 61 ~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTIL 76 (353)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999874
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.95 E-value=0.087 Score=40.42 Aligned_cols=18 Identities=6% Similarity=-0.318 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 48 e~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 479999999999999964
No 323
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.89 E-value=0.087 Score=41.17 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=15.1
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.++++|.|++|||||+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CEEEESSTTSSHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 48999999999999964
No 324
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.87 E-value=0.1 Score=39.88 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp TCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999964
No 325
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.86 E-value=0.092 Score=42.88 Aligned_cols=18 Identities=11% Similarity=-0.009 Sum_probs=15.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.|.|.|++|||||++
T Consensus 204 ~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 467888999999999964
No 326
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.83 E-value=0.11 Score=40.29 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=23.9
Q ss_pred cCHHHHHHHHHhHhhcC--CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK--DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~--~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.+...+... .......|.+.|.|++|||+|+.
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 34455555555444321 01122358999999999999864
No 327
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.75 E-value=0.18 Score=38.44 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-++..+.|.+.+.... .-.+.+.|.|++||||++.
T Consensus 28 ~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGS---MPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CSCHHHHHHHHHHHHHTC---CCEEEEESCTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC---CCeEEEECcCCCCHHHHHH
Confidence 455666666666665432 1238999999999999864
No 328
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.73 E-value=0.2 Score=39.36 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=16.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+..+.+.|.|++|||+++.
T Consensus 51 ~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999999864
No 329
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.71 E-value=0.18 Score=42.00 Aligned_cols=35 Identities=17% Similarity=-0.041 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-+++.+.+...+... ..|.+.|.|++|||+|+.
T Consensus 25 vGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp SSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHH
Confidence 56677777766655543 379999999999999863
No 330
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.56 E-value=0.19 Score=38.37 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..+.+.|.|++|||+|+.
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 458999999999999864
No 331
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.56 E-value=0.12 Score=41.48 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=16.9
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.++++|.|++|||||+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34578999999999999864
No 332
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.55 E-value=0.15 Score=40.01 Aligned_cols=35 Identities=3% Similarity=-0.191 Sum_probs=24.0
Q ss_pred HHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
...|...|...+... .+-.+.+.|.|++|||+++.
T Consensus 29 ~~~i~~~L~~~i~~~---~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 29 FTRIFLPIYDSLMSS---QNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHHHHHHHHHTT---CCCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---CCCeEEEECCCCCCHHHHHH
Confidence 445555555555432 34578999999999999864
No 333
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.50 E-value=0.089 Score=42.15 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIR 72 (366)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHH
Confidence 3479999999999999964
No 334
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.43 E-value=0.14 Score=42.82 Aligned_cols=19 Identities=11% Similarity=-0.018 Sum_probs=15.9
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+.-|.++|.|++||||+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~ 53 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISK 53 (520)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568889999999999853
No 335
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.35 E-value=0.083 Score=41.06 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=22.6
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|...|-+.+. +..++--+.|.|.|++|||||++
T Consensus 53 TG~~~LD~~lg------Gl~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 53 SGFTELDRMTY------GYKRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp CSCHHHHHHHS------SBCTTCEEEEECCTTSSHHHHHH
T ss_pred CChHHHHhhcC------CCCCCcEEEEEeCCCCCHHHHHH
Confidence 56667666542 12223357778999999999864
No 336
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.22 E-value=0.13 Score=40.77 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-+++++|-+++|||||+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~ 89 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLG 89 (347)
T ss_dssp TCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3589999999999999964
No 337
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.14 E-value=0.091 Score=41.59 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|...|-+.+.-+.+ +--+.|.|.|++|||||++
T Consensus 31 TG~~~LD~~~gGl~~------G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNK------GSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp CSCHHHHHHHCSBCT------TCEEEEEECTTSCHHHHHH
T ss_pred CCChHHHHHhcCCCC------CcEEEEEeCCCCCHHHHHH
Confidence 567777665532222 2347778999999999964
No 338
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.13 E-value=0.25 Score=42.88 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=27.6
Q ss_pred ccCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 120 CVGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 120 ~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
-.|.+..++.+.+.+... ..-.+.++|-|+||||+++.
T Consensus 182 iiG~~~~i~~l~~~l~~~---~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHH
T ss_pred ccCchHHHHHHHHHHhCC---CCCCeEEECCCCCCHHHHHH
Confidence 466777777777666432 22468999999999999863
No 339
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.12 E-value=0.29 Score=37.86 Aligned_cols=36 Identities=8% Similarity=-0.025 Sum_probs=23.3
Q ss_pred HHHHHHHHhHhhcCCCCCceEEEEEeecCCCccccc
Q psy8220 124 ELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 124 ~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~ 159 (161)
....+.+.+++........-.+.+.|-|++|||+|+
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 344555556655421111357899999999999986
No 340
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.96 E-value=0.21 Score=37.89 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=23.9
Q ss_pred CHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 122 GAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 122 g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
|-+...+.|.+.+.... .+. +.+.|.|++||||++.
T Consensus 25 g~~~~~~~l~~~l~~~~--~~~-~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGN--MPH-MIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCTHHHHHHHHHHHSCC--CCC-EEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC--CCe-EEEECcCCCCHHHHHH
Confidence 44455556666554322 123 8999999999999864
No 341
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.95 E-value=0.14 Score=39.13 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.0
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
...|+|.|..+|||||++
T Consensus 41 ~~vI~v~~KGGvGKTT~a 58 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTS 58 (307)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCccHHHHH
Confidence 356777799999999986
No 342
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.90 E-value=0.4 Score=36.32 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=15.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..+++.|-|++|||+++.
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 469999999999999874
No 343
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.79 E-value=0.43 Score=36.48 Aligned_cols=39 Identities=8% Similarity=-0.032 Sum_probs=27.6
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+..-.+...+..++..... +.-.+.+.|.||+|||.|+.
T Consensus 84 ~~~~~~~~~l~~~l~~~~~-~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 84 YDPQYAASVFLGWATKKFG-KRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CCHHHHHHHHHHHHTTCST-TCCEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCC-CCcEEEEECCCCCCHHHHHH
Confidence 5566777777777765411 12358889999999999863
No 344
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.63 E-value=0.27 Score=38.19 Aligned_cols=40 Identities=13% Similarity=-0.092 Sum_probs=25.7
Q ss_pred cCHHHHHHHHHhHhh------c---CCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTR------N---KDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~------~---~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+. . .....+--+.+.|.|++|||+|+.
T Consensus 15 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 15 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 466666666665441 1 111223568899999999999874
No 345
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.59 E-value=0.16 Score=40.44 Aligned_cols=19 Identities=16% Similarity=-0.087 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++|+|.+++|||||+.
T Consensus 136 g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SEEEEEECSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999863
No 346
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.45 E-value=0.27 Score=41.14 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=27.5
Q ss_pred cCHHHHHHHHHhHhhcC---CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK---DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~---~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+.+.+.+.++.... ....+-.++++|.|++|||||+.
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHH
Confidence 67788877776544211 11134578999999999999864
No 347
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.41 E-value=0.13 Score=39.71 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||+.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 3479999999999999964
No 348
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.40 E-value=0.1 Score=42.94 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++|+|..++|||||..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp CCCEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4579999999999999964
No 349
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.31 E-value=0.26 Score=38.81 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=13.8
Q ss_pred EEEE--EeecCCCcccccC
Q psy8220 144 TVGV--VGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~v--vG~pNVGKSsl~~ 160 (161)
-+.| .|.|++|||||+.
T Consensus 52 ~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEECTTCCSSSHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHH
Confidence 4555 7999999999974
No 350
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.12 E-value=0.14 Score=39.61 Aligned_cols=35 Identities=14% Similarity=-0.011 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-+++.+.+...+... ..+.+.|-|++|||+|+.
T Consensus 30 ~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 30 VGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHH
Confidence 34555666665554432 259999999999999863
No 351
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.01 E-value=0.1 Score=40.94 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+.=|++.|.+++||||+++
T Consensus 147 g~gvli~G~sG~GKStlal 165 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECAL 165 (312)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 4568899999999999875
No 352
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.99 E-value=0.25 Score=37.46 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-+...+.|.+.+.... .+ .+.+.|.|++|||+++.
T Consensus 20 ~g~~~~~~~l~~~l~~~~--~~-~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERKN--IP-HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CSCHHHHHHHHTTTTTTC--CC-CEEEESSSSSSHHHHHH
T ss_pred hCCHHHHHHHHHHHhCCC--CC-eEEEECcCCcCHHHHHH
Confidence 455667777776665432 12 28999999999999864
No 353
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.99 E-value=0.25 Score=40.32 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHhHhh----------cCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTR----------NKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~----------~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|+++..+.|.+... ..+.+.+--|.+.|.|++|||+|+.
T Consensus 175 gGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHH
Confidence 577877777776542 1123334458889999999999874
No 354
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.82 E-value=0.14 Score=37.81 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.-+.+.|.|++|||+|+.
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999999864
No 355
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=86.76 E-value=0.1 Score=44.44 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=15.2
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.++|||.+|+|||||+.
T Consensus 47 ~iaIvG~nGsGKSTLL~ 63 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLE 63 (608)
T ss_dssp CEECCCCTTSCHHHHHH
T ss_pred eEEEECCCCChHHHHHH
Confidence 49999999999999963
No 356
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.74 E-value=0.36 Score=37.60 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=15.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.+.|.|++|||+|+.
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999874
No 357
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.63 E-value=0.12 Score=41.97 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=15.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.|.|.|++|||||++
T Consensus 201 ~l~ii~G~pg~GKT~lal 218 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFAL 218 (444)
T ss_dssp CEEEEEECTTSCHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 357778999999999864
No 358
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.59 E-value=0.13 Score=42.18 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=15.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.|.|.|++|||||++
T Consensus 198 ~liiIaG~pG~GKTtlal 215 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFAL 215 (444)
T ss_dssp CEEEEEECSSSSHHHHHH
T ss_pred cEEEEEeCCCCChHHHHH
Confidence 357778999999999864
No 359
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=86.33 E-value=0.28 Score=44.86 Aligned_cols=38 Identities=16% Similarity=-0.032 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+.... ..--|+|+|++++|||||+.
T Consensus 131 VGRe~eLeeL~elL~~~d--~~RVV~IvGmGGIGKTTLAk 168 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKTWVAL 168 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC--SSCEEEECCSTTSSHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC--CCeEEEEEcCCCccHHHHHH
Confidence 677777777777665321 12468899999999999974
No 360
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.27 E-value=0.34 Score=37.65 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-+..++.|.+.+.... .+--+.+.|.|++||||++.
T Consensus 19 vg~~~~~~~L~~~l~~~~--~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSCHHHHHHHHHHHHHTC--CCSEEEEESCTTSSHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHH
Confidence 455566666666554322 12247889999999999864
No 361
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.19 E-value=0.21 Score=39.31 Aligned_cols=40 Identities=8% Similarity=-0.035 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHhHhhc----C-----CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRN----K-----DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~----~-----~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+.. . ....+..+.+.|.|++|||+|+.
T Consensus 87 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 87 AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 4566666666655421 0 01234579999999999999864
No 362
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.11 E-value=0.24 Score=43.61 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.++.++.+.+++.... .-.+.++|-|+||||||+.
T Consensus 173 iGr~~~i~~l~~~l~~~~---~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRT---KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCHHHHHHHHHHHHCSS---CCCCEEEECTTSCHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHH
Confidence 566666666666654321 2357899999999999863
No 363
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.04 E-value=0.38 Score=39.16 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHhHhhc--CCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRN--KDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~--~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.++.++.+..+... .+...+..+.+.|.|++|||+|+.
T Consensus 40 iG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 40 VGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 4556665555443321 122233569999999999999864
No 364
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.03 E-value=0.36 Score=41.80 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.+.+.+... ..-.+.++|-|+||||+|+.
T Consensus 189 iGr~~~i~~l~~~l~~~---~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 189 IGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp CSCHHHHHHHHHHHTSS---SSCEEEEECCTTSSHHHHHH
T ss_pred cCCHHHHHHHHHHHhcc---CCCCeEEEcCCCCCHHHHHH
Confidence 56666666666655432 23568999999999999863
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.97 E-value=0.18 Score=39.56 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=15.3
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.++|+|.+++|||||..
T Consensus 173 ~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp CEEEEESTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999863
No 366
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.70 E-value=0.22 Score=42.10 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+..|.+.|.|++||||++.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~ 414 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIAR 414 (573)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHH
Confidence 4789999999999999864
No 367
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.55 E-value=0.16 Score=42.85 Aligned_cols=20 Identities=20% Similarity=0.036 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.++++|.+++|||||..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar 387 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLAR 387 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHH
Confidence 34679999999999999864
No 368
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.50 E-value=0.32 Score=41.20 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
+|-+.+++.+...+... -.++++|-|++|||||+.
T Consensus 44 ~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp CSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHH
T ss_pred ECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHH
Confidence 56666777776666543 369999999999999974
No 369
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=85.40 E-value=0.25 Score=41.73 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.+++||..++|||||+.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLS 388 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34589999999999999964
No 370
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.33 E-value=0.24 Score=42.48 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..|.+.|.|++||||++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr 70 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSM 70 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 34679999999999999864
No 371
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.24 E-value=0.25 Score=38.02 Aligned_cols=19 Identities=11% Similarity=-0.121 Sum_probs=16.1
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+-.++++|.+++||||++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457889999999999986
No 372
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=85.01 E-value=0.38 Score=40.43 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+..|.+.|.|++||||++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~ 390 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAE 390 (546)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHH
Confidence 4678999999999999863
No 373
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.00 E-value=0.21 Score=39.61 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++|+|.+++|||||+.
T Consensus 176 ~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp CCEEEEESSSSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999999863
No 374
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.85 E-value=0.2 Score=38.57 Aligned_cols=18 Identities=6% Similarity=-0.095 Sum_probs=15.3
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.+.|.|++|||||+.
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 348899999999999863
No 375
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=84.85 E-value=2.6 Score=34.36 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=29.1
Q ss_pred hccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 24 AADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 24 ~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
..|-+++|+|+..+ .....+.+.+.+ .-.+..+|+||+|....
T Consensus 211 ~pd~vlLVlDa~~g--q~a~~~a~~f~~-~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 211 KPDDVILVIDASIG--QKAYDLASRFHQ-ASPIGSVIITKMDGTAK 253 (433)
T ss_dssp CCSEEEEEEEGGGG--GGGHHHHHHHHH-HCSSEEEEEECGGGCSC
T ss_pred CCcceEEEEeCccc--hHHHHHHHHHhc-ccCCcEEEEeccccccc
Confidence 46999999999864 223344444443 23567899999998654
No 376
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.65 E-value=0.21 Score=39.71 Aligned_cols=18 Identities=22% Similarity=-0.064 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++|+|.+++|||||..
T Consensus 124 g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999863
No 377
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.62 E-value=0.26 Score=40.29 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-+++++|-+++|||||+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~ 175 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLG 175 (438)
T ss_dssp TCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4589999999999999963
No 378
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=84.54 E-value=0.28 Score=41.29 Aligned_cols=19 Identities=26% Similarity=0.006 Sum_probs=16.9
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.+++||.++.|||||+.
T Consensus 367 G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp TCEEEEECSTTSSHHHHHT
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4589999999999999975
No 379
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.48 E-value=0.29 Score=41.23 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=16.6
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|.+++|||||+.
T Consensus 369 G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp TCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4589999999999999964
No 380
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.41 E-value=0.3 Score=38.79 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=27.1
Q ss_pred cCHHHHHHHHHhHhhc----CC-----CCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRN----KD-----IKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~----~~-----~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+++.. .. ......+.+.|-|++|||+|+.
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHH
Confidence 5677777777766521 00 0123579999999999999874
No 381
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.31 E-value=0.39 Score=39.28 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=28.6
Q ss_pred cccCHHHHHHHHHhHhh----------cCCCCCceEEEEEeecCCCcccccC
Q psy8220 119 SCVGAELLMLLLGNYTR----------NKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 119 ~~~g~~~L~~~l~~~~~----------~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.-.|.++..+.|.+... ..+.+.+--|.+.|.|++|||+|+.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHH
Confidence 33577777777766431 1123345578999999999999874
No 382
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.30 E-value=0.3 Score=38.66 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=15.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.-|.|+|.+++|||||..
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468889999999999864
No 383
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.22 E-value=0.35 Score=40.37 Aligned_cols=20 Identities=0% Similarity=0.059 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+..|.++|.+++||||+..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~ 413 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSI 413 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHH
T ss_pred cceEEEecccCCCCHHHHHH
Confidence 34789999999999999863
No 384
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.12 E-value=0.37 Score=37.95 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=15.5
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
.-+.+.|.|++|||+|+.
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 458899999999999874
No 385
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.08 E-value=0.35 Score=40.89 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=17.1
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.+++||.++.|||||+.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 34589999999999999863
No 386
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.85 E-value=0.22 Score=39.28 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.9
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+--++|+|.|++|||||.+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34678999999999999964
No 387
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.76 E-value=0.23 Score=41.32 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|.|++|||||+.
T Consensus 40 e~~~l~G~nGsGKSTL~~ 57 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSI 57 (525)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 469999999999999974
No 388
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.48 E-value=0.27 Score=41.42 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||+.
T Consensus 369 G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4589999999999999974
No 389
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=83.40 E-value=0.22 Score=39.60 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=15.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||..
T Consensus 42 e~~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILR 59 (355)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 468999999999999964
No 390
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.39 E-value=0.24 Score=40.02 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=16.1
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+--+.|+|.|++|||||.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 3468899999999999964
No 391
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.29 E-value=0.4 Score=39.22 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=23.5
Q ss_pred cCHHHHH---HHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLM---LLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~---~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-+.++ ..|...+.... .-.+.+.|-|++|||||+.
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~---~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGH---LHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTC---CCEEEEECSTTSSHHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcCC---CcEEEEECCCCCcHHHHHH
Confidence 3444444 44444444332 1368899999999999874
No 392
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=83.08 E-value=0.28 Score=38.69 Aligned_cols=18 Identities=6% Similarity=0.124 Sum_probs=15.7
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..+.+.|.|++|||+|+.
T Consensus 73 ~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 468999999999999863
No 393
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=83.05 E-value=0.67 Score=38.27 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=15.5
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.++|.|++|||+|+.
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999999864
No 394
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.95 E-value=0.58 Score=38.05 Aligned_cols=40 Identities=13% Similarity=-0.101 Sum_probs=26.8
Q ss_pred cCHHHHHHHHHhHhh------cC---CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTR------NK---DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~------~~---~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+...+.|.+.+. .. ....+.-+.+.|.|++|||+|+.
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 567777777776541 00 01123568899999999999874
No 395
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.88 E-value=0.51 Score=38.59 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=27.2
Q ss_pred cCHHHHHHHHHhHhh----------cCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTR----------NKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~----------~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|+++..+.|.+... ..+.+.+--|.+.|.|++|||+|+.
T Consensus 184 gGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHH
Confidence 467777777765431 1123344568889999999999874
No 396
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.53 E-value=0.29 Score=41.03 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+=.+++||..++|||||+.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk 65 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVK 65 (538)
T ss_dssp TSEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999964
No 397
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.47 E-value=0.27 Score=39.10 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=24.4
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|..+|-+.|. .-+..++--+.|.|.|++|||||.+
T Consensus 44 TG~~~LD~~Lg----~GGi~~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 44 TGSLAIDIATG----VGGYPRGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp CSCHHHHHHTS----SSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CCCHHHHHHhc----cCCccCCcEEEEECCCCCCHHHHHH
Confidence 67777766653 0122233568888999999999964
No 398
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=82.33 E-value=0.31 Score=37.54 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=15.0
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.+.+.|-|++|||+|+.
T Consensus 47 ~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp CEEEECCGGGCTTHHHH
T ss_pred eEEEECCCCccHHHHHH
Confidence 39999999999999863
No 399
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=82.32 E-value=0.27 Score=39.36 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=15.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||..
T Consensus 38 e~~~llGpnGsGKSTLLr 55 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLR 55 (372)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCChHHHHHH
Confidence 468999999999999964
No 400
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.09 E-value=0.53 Score=38.55 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHhHhhc----------CCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRN----------KDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~----------~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|+++..+.|.+.... .+.+.+--|.+.|.|++|||+|+.
T Consensus 185 gGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 185 GGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHH
Confidence 5788888877765421 122334568999999999999874
No 401
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.94 E-value=0.75 Score=38.08 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=15.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.+.|.|++|||||+.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468888999999999874
No 402
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=81.58 E-value=0.14 Score=38.15 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=14.7
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
-+.+.|.|++|||+|+.
T Consensus 46 ~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCBCSSCSSHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 37889999999999874
No 403
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.56 E-value=0.7 Score=37.49 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=15.7
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--++|+|.+++|||||..
T Consensus 168 gii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999999863
No 404
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=81.46 E-value=0.4 Score=40.47 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.+++||.+++|||||+.
T Consensus 369 Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp TCEEEEECSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4589999999999999974
No 405
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.40 E-value=0.32 Score=38.48 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=23.2
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|...|-..|. .-+..++--+.|.|.|++|||||++
T Consensus 44 TG~~~LD~~Lg----~GGl~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 44 TGSISLDVALG----IGGLPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp CSCHHHHHHTS----SSSEETTSEEEEEESTTSSHHHHHH
T ss_pred cCCHHHHHHhc----cCCccCCeEEEEECCCCCCHHHHHH
Confidence 56666655543 0112223468888999999999964
No 406
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.24 E-value=0.48 Score=38.43 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=28.1
Q ss_pred ccCHHHHHHHHHhHhh----------cCCCCCceEEEEEeecCCCcccccC
Q psy8220 120 CVGAELLMLLLGNYTR----------NKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 120 ~~g~~~L~~~l~~~~~----------~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
-.|+++..+.|++... ..+.+.+--|.+.|.|++|||+|+.
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 3577888777776541 1123334458899999999999874
No 407
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=81.19 E-value=0.32 Score=39.14 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=16.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+=.++++|..+.|||||..
T Consensus 47 Ge~~~llGpsGsGKSTLLr 65 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLS 65 (390)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 3479999999999999864
No 408
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.87 E-value=0.51 Score=38.98 Aligned_cols=42 Identities=10% Similarity=0.020 Sum_probs=29.4
Q ss_pred cccCHHHHHHHHHhHhh----------cCCCCCceEEEEEeecCCCcccccC
Q psy8220 119 SCVGAELLMLLLGNYTR----------NKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 119 ~~~g~~~L~~~l~~~~~----------~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.-.|+++..+.|++... ..+...+--|.+.|.|++|||+|+.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 44678888888876531 1123345568899999999999864
No 409
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=80.44 E-value=0.45 Score=39.34 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=16.2
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-+++++|-|+||||||+.
T Consensus 152 q~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp CEEEEECCSSSCHHHHHH
T ss_pred CEEEEECCCCCCccHHHH
Confidence 479999999999999974
No 410
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=80.30 E-value=0.46 Score=40.69 Aligned_cols=18 Identities=22% Similarity=0.017 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++|+|..++|||||+.
T Consensus 349 e~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp SEEEEECSTTSSHHHHHT
T ss_pred CEEEEEeeCCCCHHHHHH
Confidence 478999999999999973
No 411
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=79.83 E-value=0.36 Score=38.13 Aligned_cols=17 Identities=24% Similarity=0.018 Sum_probs=14.5
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.+.+.|.|++|||+|+.
T Consensus 125 viLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp EEEEECSCSSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 46788999999999864
No 412
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=79.53 E-value=0.42 Score=39.35 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=16.1
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
-.-|+|+|.+++|||+|..
T Consensus 67 v~vvsv~G~~~~gks~l~N 85 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMD 85 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHH
T ss_pred eEEEEEECCCCCchhHHHH
Confidence 3678899999999999864
No 413
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=79.40 E-value=0.76 Score=38.00 Aligned_cols=40 Identities=8% Similarity=0.037 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHhHhhcC----------CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK----------DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~----------~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+..++.|.+.+... +...+..|.+.|-|++|||+|+.
T Consensus 207 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHH
Confidence 56666666665544210 12234569999999999999864
No 414
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=79.27 E-value=0.43 Score=40.61 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.9
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+=.++++|..++|||||+.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlk 135 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVK 135 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHH
Confidence 34579999999999999964
No 415
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.08 E-value=0.48 Score=39.49 Aligned_cols=17 Identities=24% Similarity=0.093 Sum_probs=15.2
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.++|+|-+++|||||+.
T Consensus 262 ~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 262 SAIVVGETASGKTTTLN 278 (511)
T ss_dssp CEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999999863
No 416
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.06 E-value=0.58 Score=43.36 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=17.2
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.++|||.++.|||||+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHH
T ss_pred CCcEEEEEecCCCcHHHHHH
Confidence 34589999999999999974
No 417
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=78.76 E-value=0.46 Score=39.51 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=15.1
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
-++++|.|++|||||+.
T Consensus 66 GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999999974
No 418
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.41 E-value=0.47 Score=39.42 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=16.3
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++|+|.|++|||||..
T Consensus 281 G~i~~i~G~~GsGKSTLl~ 299 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVS 299 (525)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHH
Confidence 3578999999999999964
No 419
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=78.41 E-value=0.034 Score=44.39 Aligned_cols=46 Identities=7% Similarity=-0.019 Sum_probs=30.0
Q ss_pred hhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 23 EAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 23 ~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
++.|.+++++|+............+++.. .+.|+++++||+|....
T Consensus 244 ~~i~~~~~~l~~~~~~~~g~l~~l~~l~~-~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 244 REIHPRVYQLNEGQTLFFGGLARLDYIKG-GRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCCCCEEEEECTTEEEEETTTEEEEEEES-SSEEEEEEECTTSCEEE
T ss_pred cccCceEEEEcCCceEEECCEEEEEEccC-CCceEEEEecCCccccc
Confidence 78999999999843211111111233443 46899999999998754
No 420
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.25 E-value=0.46 Score=36.87 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=15.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.|.|.|++|||||++
T Consensus 108 ~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHhHHHH
Confidence 468888999999999864
No 421
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=77.98 E-value=0.52 Score=38.64 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=15.7
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..+.+.|.|++||||++.
T Consensus 51 ~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 469999999999999864
No 422
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=77.96 E-value=0.5 Score=38.40 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=15.5
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.+.|.|++|||||+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999999874
No 423
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.92 E-value=0.95 Score=34.62 Aligned_cols=38 Identities=3% Similarity=-0.181 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|-+...+.|.+.+.... .+--+.+-|.|++|||+++.
T Consensus 29 vg~~~~~~~l~~~l~~~~--~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGK--IPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CCCHHHHHHHHHHHHTTC--CCSEEEECSSTTSSHHHHHH
T ss_pred hCcHHHHHHHHHHHHcCC--CCeEEEeeCcCCCCHHHHHH
Confidence 344566666666665332 11234555779999999864
No 424
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=77.88 E-value=0.64 Score=41.17 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=17.4
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.++|+|..++|||||+.
T Consensus 522 ~Geiv~I~G~nGSGKSTLl~ 541 (842)
T 2vf7_A 522 LGVMTSVTGVSGSGKSTLVS 541 (842)
T ss_dssp SSSEEEEECCTTSSHHHHCC
T ss_pred CCCEEEEEcCCCcCHHHHHH
Confidence 34589999999999999986
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=77.87 E-value=0.46 Score=40.47 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++++|..++|||||+.
T Consensus 103 Gei~~LvGpNGaGKSTLLk 121 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALK 121 (608)
T ss_dssp TSEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4579999999999999964
No 426
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=77.87 E-value=0.53 Score=39.87 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
+.|.++|-|++|||+|+.
T Consensus 328 ~~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CCEEEEESSCCTHHHHHH
T ss_pred cceEEECCCchHHHHHHH
Confidence 479999999999999864
No 427
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=77.78 E-value=0.049 Score=43.45 Aligned_cols=47 Identities=6% Similarity=-0.017 Sum_probs=30.5
Q ss_pred hhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 22 i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
.++.+.+++++|+............+++.. .+.|+++|+||+|....
T Consensus 242 ~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~-~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 242 TKEIKPMVFQLNEEQTLFFSGLARFDYVSG-GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp SSCCCCEEEEECTTEEEEETTTEEEEEEES-SSEEEEEEECTTSCEEE
T ss_pred ccccCceEEEEcCCCEEEEcceEEEEEecC-CCceEEEEecCcccccc
Confidence 578899999999843211111111233443 46899999999998765
No 428
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.59 E-value=0.7 Score=37.62 Aligned_cols=18 Identities=11% Similarity=-0.128 Sum_probs=15.7
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+-.++++|.+++||||++
T Consensus 98 ~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888999999999986
No 429
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.32 E-value=0.56 Score=37.20 Aligned_cols=18 Identities=6% Similarity=-0.032 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++|+|.++.|||||+.
T Consensus 36 ~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 458999999999999864
No 430
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.01 E-value=0.52 Score=36.32 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=22.3
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|...|-+.|.- +...+--+.|.|.|++|||+|++
T Consensus 82 TG~~~LD~~l~G-----Gl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 82 TSSSELDSVLGG-----GLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp CSCHHHHHHTTS-----SEETTEEEEEEESTTSSHHHHHH
T ss_pred CCChhHHHhcCC-----CccCCeEEEEECCCCCCHHHHHH
Confidence 455555544421 12233467888999999999864
No 431
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=76.66 E-value=0.65 Score=38.84 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.4
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+=.++++|..++|||||+.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk 330 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVK 330 (538)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999964
No 432
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=76.64 E-value=0.65 Score=38.89 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=15.9
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
=.++++|..++|||||+.
T Consensus 295 ei~~i~G~nGsGKSTLl~ 312 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFAR 312 (538)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 468999999999999964
No 433
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=76.10 E-value=0.54 Score=36.86 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=22.4
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|...|-+.|. -+...+--+.|.|.|++|||||++
T Consensus 106 TG~~~LD~~Lg-----GGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 106 TGSQEFDKLLG-----GGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CSCHHHHHHTT-----SSBCSSEEEEEECCTTCTHHHHHH
T ss_pred cCChhHHHHhc-----CCCCCCeEEEEECCCCCCHHHHHH
Confidence 55555544432 122334567888999999999864
No 434
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=76.05 E-value=5.9 Score=33.50 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=35.7
Q ss_pred HHHHHHHHhh-hccEEEEEEeCCCCCCCCc-HHHHHHHhCCCCCcEEEEeecCCCCCc
Q psy8220 14 VQEIERSVVE-AADVILEVVDARDPMGTRC-KVAEDLVVGTPGKKLVIVINKAGKPST 69 (161)
Q Consensus 14 ~~~~~~~~i~-~aDviL~VvD~~~~~~~~~-~~i~~~l~~~~~k~~ilVlNK~Dl~~~ 69 (161)
+.++..+.+. ...+++.++++.......+ ..+.+.+.. .+.+.|+|+||+|+++.
T Consensus 173 i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~-~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 173 IKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP-EGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS-SCCSEEEEEECGGGSSS
T ss_pred HHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh-cCCceEEEecchhhcCc
Confidence 4444344343 4578888888765444322 345555544 57899999999999865
No 435
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=75.97 E-value=0.76 Score=42.46 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=17.1
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.+++||.++.|||||+.
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34589999999999999964
No 436
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=75.82 E-value=10 Score=28.90 Aligned_cols=45 Identities=18% Similarity=0.086 Sum_probs=28.3
Q ss_pred HhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCc-EEEEeecCCCCCc
Q psy8220 21 VVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKK-LVIVINKAGKPST 69 (161)
Q Consensus 21 ~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~-~ilVlNK~Dl~~~ 69 (161)
.+..+|.+++|+|+..+ .......+.+.+ ..+ ..+|+||+|....
T Consensus 209 ~~~~~d~vllVvda~~g--~~~~~~~~~~~~--~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 209 EAIKPDEVTLVIDASIG--QKAYDLASKFNQ--ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HHHCCSEEEEEEEGGGG--GGHHHHHHHHHH--TCTTEEEEEECGGGCTT
T ss_pred HHhcCCEEEEEeeCCch--HHHHHHHHHHHh--hCCCCEEEEeCCCCCcc
Confidence 34479999999998643 222222333332 355 7789999997654
No 437
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=75.51 E-value=0.76 Score=39.32 Aligned_cols=17 Identities=18% Similarity=-0.031 Sum_probs=15.5
Q ss_pred eEEEEEeecCCCccccc
Q psy8220 143 ITVGVVGECNIAGSIRD 159 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~ 159 (161)
-.+++||..++|||||+
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 47999999999999994
No 438
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.41 E-value=0.57 Score=37.15 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|...|-..|. .-+..++--+.|.|.|++|||||++
T Consensus 46 TG~~~LD~~Lg----~GGl~~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 46 TGSLSLDIALG----AGGLPMGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp CSCHHHHHHTS----SSSEETTSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHHHHhc----cCCccCCeEEEEECCCCCCHHHHHH
Confidence 56666655542 0111223457888999999999964
No 439
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=75.32 E-value=0.74 Score=39.16 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
=.++++|..++|||||+.
T Consensus 383 ei~~i~G~NGsGKSTLlk 400 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVK 400 (607)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999999964
No 440
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.28 E-value=0.8 Score=37.22 Aligned_cols=19 Identities=5% Similarity=-0.155 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++-+++|+|-|++|||||+
T Consensus 173 rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEecCCCCChhHHH
Confidence 3469999999999999986
No 441
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.03 E-value=1.8 Score=37.46 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=15.3
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.+.+.|.|+||||+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999864
No 442
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.03 E-value=5.4 Score=27.81 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=31.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC----CCCcEEEEeecCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT----PGKKLVIVINKAGKP 67 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~----~~k~~ilVlNK~Dl~ 67 (161)
..++..||.++.++++...- ..-..+.+.+... .+.++.+|+|++|-.
T Consensus 92 ~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 92 SAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp HHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred HHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 45677899999999876543 3334445555431 135678999999953
No 443
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=74.35 E-value=0.76 Score=42.45 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=16.1
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
=++|+||..+.|||||+.
T Consensus 1060 e~v~ivG~sGsGKSTl~~ 1077 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQ 1077 (1284)
T ss_dssp SEEEEECSSSTTHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 489999999999999964
No 444
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.06 E-value=1 Score=39.53 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=17.5
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
..+-.|+++|.|++|||||+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 344679999999999999874
No 445
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=74.03 E-value=0.71 Score=41.57 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=16.0
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++++|..++|||||+.
T Consensus 462 e~v~LiGpNGsGKSTLLk 479 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMR 479 (986)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 446
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=73.55 E-value=0.51 Score=37.51 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=16.1
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
.+ .++++|..+.|||||+
T Consensus 60 ~G-~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIV 77 (415)
T ss_dssp SS-EEEEEESHHHHHHHHT
T ss_pred CC-cEEEECCCCCCHHHHH
Confidence 45 8899999999999997
No 447
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=72.74 E-value=0.9 Score=40.93 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=17.3
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+-.++|+|..++|||||+.
T Consensus 667 ~GeivaI~G~nGSGKSTLl~ 686 (993)
T 2ygr_A 667 LGVLTSVTGVSGSGKSTLVN 686 (993)
T ss_dssp SSSEEEEECSTTSSHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 34589999999999999985
No 448
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=72.08 E-value=1.2 Score=36.01 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=18.4
Q ss_pred CCceEEEEEeecCCCcccccC
Q psy8220 140 KTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 140 ~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+.+++.++|...+||||++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~K 58 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVK 58 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHH
T ss_pred hccceEEEecCCCCchhhHHH
Confidence 457999999999999999863
No 449
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=72.07 E-value=0.53 Score=38.77 Aligned_cols=18 Identities=11% Similarity=-0.130 Sum_probs=14.7
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
--+.|.|.|++|||||++
T Consensus 243 ~l~li~G~pG~GKT~lal 260 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVR 260 (503)
T ss_dssp CEEEEEESSCHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHH
Confidence 346777999999999864
No 450
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=71.79 E-value=0.99 Score=38.43 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=15.1
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.++++|..++|||||+.
T Consensus 380 iv~iiG~NGsGKSTLlk 396 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIK 396 (608)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47999999999999964
No 451
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=71.37 E-value=0.5 Score=42.55 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.7
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+=.++|+|..++|||||+.
T Consensus 699 GeivaIiGpNGSGKSTLLk 717 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLIN 717 (986)
T ss_dssp TCEEEECSCCCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3589999999999999974
No 452
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=70.12 E-value=5.3 Score=30.01 Aligned_cols=20 Identities=5% Similarity=0.288 Sum_probs=9.7
Q ss_pred HHHHHHHHhhhccEEEEEEeCC
Q psy8220 14 VQEIERSVVEAADVILEVVDAR 35 (161)
Q Consensus 14 ~~~~~~~~i~~aDviL~VvD~~ 35 (161)
+.++..+.-++.|+| ++|+.
T Consensus 181 l~~ll~~l~~~yD~V--IIDtp 200 (271)
T 3bfv_A 181 FANLYDTLLMNYNFV--IIDTP 200 (271)
T ss_dssp HHHHHHHHHHHCSEE--EEECC
T ss_pred HHHHHHHHHhCCCEE--EEeCC
Confidence 444433333456754 45653
No 453
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=69.95 E-value=1.1 Score=36.47 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=15.0
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
-+.|.|.|++||||++.
T Consensus 47 ~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 47 HVTINGPAGTGATTLTK 63 (459)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 68889999999999864
No 454
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=69.49 E-value=1.1 Score=37.76 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=14.5
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.+.|.|.|++||||++.
T Consensus 206 ~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 57788999999999863
No 455
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.42 E-value=0.48 Score=41.63 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHhHhhcC----------CCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNK----------DIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~----------~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|.+...+.|.++.... +...+-.++++|.|++|||||+.
T Consensus 480 ~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lak 529 (806)
T 1ypw_A 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp SCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHH
T ss_pred ccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHH
Confidence 35555666666554210 11233458899999999999874
No 456
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=69.38 E-value=0.87 Score=40.92 Aligned_cols=19 Identities=21% Similarity=0.024 Sum_probs=16.9
Q ss_pred ceEEEEEeecCCCcccccC
Q psy8220 142 SITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~~ 160 (161)
+-.++|+|..++|||||+.
T Consensus 650 Geiv~I~G~nGSGKSTLl~ 668 (972)
T 2r6f_A 650 GTFVAVTGVSGSGKSTLVN 668 (972)
T ss_dssp SSEEECCBCTTSSHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4579999999999999985
No 457
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=68.43 E-value=1.2 Score=39.86 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=16.1
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+-.++|+|..++|||||+
T Consensus 610 Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 610 GVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CcEEEEEccCCCChhhhH
Confidence 457899999999999996
No 458
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=68.31 E-value=12 Score=26.73 Aligned_cols=29 Identities=10% Similarity=-0.174 Sum_probs=20.2
Q ss_pred CHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCc
Q psy8220 122 GAELLMLLLGNYTRNKDIKTSITVGVVGECNIAG 155 (161)
Q Consensus 122 g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGK 155 (161)
+.-++++.|....... -+|++||++|+-.
T Consensus 79 s~~Dil~al~~a~~~~-----~kIavvg~~~~~~ 107 (196)
T 2q5c_A 79 TRFDTMRAVYNAKRFG-----NELALIAYKHSIV 107 (196)
T ss_dssp CHHHHHHHHHHHGGGC-----SEEEEEEESSCSS
T ss_pred CHhHHHHHHHHHHhhC-----CcEEEEeCcchhh
Confidence 4456777777664432 3899999999754
No 459
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=68.24 E-value=6.6 Score=27.46 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=28.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHH--HHhCCCCCcEEEEeecC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAED--LVVGTPGKKLVIVINKA 64 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~--~l~~~~~k~~ilVlNK~ 64 (161)
.+.+++||++|.++|...+...+.-...+ +... .+||++++.+..
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A-lgKPVi~l~~d~ 108 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA-LNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH-TTCEEEEECSCC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH-CCCEEEEEEcCc
Confidence 58999999999999953332222222222 2222 589999987643
No 460
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=67.73 E-value=3 Score=35.93 Aligned_cols=18 Identities=6% Similarity=0.003 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..+.+.|.|+||||+|+.
T Consensus 489 ~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999999863
No 461
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=67.71 E-value=1.2 Score=35.49 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=22.6
Q ss_pred cCHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCcccccC
Q psy8220 121 VGAELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~~ 160 (161)
.|...|-..|. .-+..++--+.|.|.|++|||||++
T Consensus 57 TG~~~LD~~Lg----~GGl~~G~li~I~G~pGsGKTtlal 92 (366)
T 1xp8_A 57 TGSLSLDLALG----VGGIPRGRITEIYGPESGGKTTLAL 92 (366)
T ss_dssp CSCHHHHHHTS----SSSEETTSEEEEEESTTSSHHHHHH
T ss_pred CCCHHHHHHhC----CCCccCCcEEEEEcCCCCChHHHHH
Confidence 56666655543 0111222356778999999999864
No 462
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.16 E-value=13 Score=24.44 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=36.0
Q ss_pred CcCCCCcchHHHHHHHHHHHhhhccEEEEEEeCCCCCCCCcHH-HHHHHhCC--CCCcEEEEeecCC
Q psy8220 2 RSVKPMEMRGVVVQEIERSVVEAADVILEVVDARDPMGTRCKV-AEDLVVGT--PGKKLVIVINKAG 65 (161)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~i~~aDviL~VvD~~~~~~~~~~~-i~~~l~~~--~~k~~ilVlNK~D 65 (161)
|.+.-.+...+-++++| +...+-|+++.|.- .+.+ +..++.+. .+..+++|.|--|
T Consensus 56 rtvedkedfrenireiw-erypqldvvvivtt-------ddkewikdfieeakergvevfvvynnkd 114 (162)
T 2l82_A 56 RTVEDKEDFRENIREIW-ERYPQLDVVVIVTT-------DDKEWIKDFIEEAKERGVEVFVVYNNKD 114 (162)
T ss_dssp EECCSHHHHHHHHHHHH-HHCTTCCEEEEEEC-------CCHHHHHHHHHHHHHTTCEEEEEEECSC
T ss_pred eeeccHHHHHHHHHHHH-HhCCCCcEEEEEec-------CcHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 33444555667789995 88889999888852 2333 33333221 5788888988665
No 463
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=66.92 E-value=1.3 Score=39.27 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=14.4
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
=+.|-|.+++|||||+-
T Consensus 38 l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 38 LVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp EEEEESSTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46677999999999973
No 464
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.92 E-value=1.5 Score=35.20 Aligned_cols=18 Identities=17% Similarity=0.015 Sum_probs=15.8
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
...++|+|.|++|||+++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 357999999999999975
No 465
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=66.91 E-value=1.5 Score=36.04 Aligned_cols=37 Identities=16% Similarity=0.012 Sum_probs=21.5
Q ss_pred HHHHHHHHhHhhcCCC-CCceEE-EEEeecCCCcccccC
Q psy8220 124 ELLMLLLGNYTRNKDI-KTSITV-GVVGECNIAGSIRDL 160 (161)
Q Consensus 124 ~~L~~~l~~~~~~~~~-~~~~~v-~vvG~pNVGKSsl~~ 160 (161)
..+++.|.+.++.... ....++ .|.|.|+.||||+|.
T Consensus 141 ~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~ 179 (446)
T 3vkw_A 141 MAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEIL 179 (446)
T ss_dssp HHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHH
Confidence 3445555555432111 122344 556999999999874
No 466
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=66.72 E-value=5.1 Score=31.50 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=23.8
Q ss_pred cCHHHHHHHHHhHhh----cC-----CCCCceEEEEE-eecCCCccccc
Q psy8220 121 VGAELLMLLLGNYTR----NK-----DIKTSITVGVV-GECNIAGSIRD 159 (161)
Q Consensus 121 ~g~~~L~~~l~~~~~----~~-----~~~~~~~v~vv-G~pNVGKSsl~ 159 (161)
...+.+.+.+.+... .. .....-.|+|. |..+|||||++
T Consensus 113 q~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a 161 (373)
T 3fkq_A 113 QRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVA 161 (373)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHH
Confidence 456666666654431 11 11234567777 59999999986
No 467
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.27 E-value=3.8 Score=36.02 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=15.8
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
..+.+.|-|+|||++|+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999999863
No 468
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.85 E-value=1.3 Score=36.97 Aligned_cols=18 Identities=17% Similarity=0.040 Sum_probs=15.5
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++|.|.|+.|||+++.
T Consensus 168 pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp CSEEEECCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999999863
No 469
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=65.51 E-value=8.1 Score=27.14 Aligned_cols=41 Identities=10% Similarity=-0.007 Sum_probs=26.1
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEe
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVI 61 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVl 61 (161)
.+.+.+||+++.++|+..+...---++- +... .++|++++-
T Consensus 76 ~~~i~~aD~vVA~ldg~~~D~GTa~EiG-yA~a-lgKPVv~l~ 116 (167)
T 1s2d_A 76 LTGISNATCGVFLYDMDQLDDGSAFXIG-FMRA-MHKPVILVP 116 (167)
T ss_dssp HHHHHHCSEEEEEEESSSCCHHHHHHHH-HHHH-TTCCEEEEE
T ss_pred HHHHHhCCEEEEECCCCCCCCCceeehh-hHhh-CCCeEEEEE
Confidence 5789999999999997544221111221 2222 589998873
No 470
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=65.08 E-value=1.9 Score=35.01 Aligned_cols=19 Identities=5% Similarity=-0.192 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++-|++|+|-|++|||+|+
T Consensus 174 rGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp TTCEEEEEECTTCCHHHHH
T ss_pred CCceEEEecCCCCChhHHH
Confidence 3579999999999999986
No 471
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=64.28 E-value=6.6 Score=27.55 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=27.6
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKA 64 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~ 64 (161)
.+.+.+||+++.++|+..+...---++ .+... .++|++++.+-.
T Consensus 64 ~~~i~~aD~viA~ldg~~~D~Gt~~Ei-G~A~a-~gkPVi~~~~D~ 107 (162)
T 3ehd_A 64 TENVLASDLLVALLDGPTIDAGVASEI-GVAYA-KGIPVVALYTDS 107 (162)
T ss_dssp HHHHHTCSEEEEECCSSSCCHHHHHHH-HHHHH-TTCCEEEECCCG
T ss_pred HHHHHHCCEEEEECCCCCCCCCHHHHH-HHHHH-CCCEEEEEEcCc
Confidence 578999999999998654321111122 22223 589998887643
No 472
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=61.83 E-value=6.2 Score=27.44 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=28.0
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKA 64 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~ 64 (161)
.+.+.+||++|.++|+..+...---++- +... .+||++++...-
T Consensus 73 ~~~i~~aD~vvA~ldg~~~D~GT~~EiG-yA~A-~gkPVv~~~~~~ 116 (157)
T 1f8y_A 73 LNGIKTNDIMLGVYIPDEEDVGLGMELG-YALS-QGKYVLLVIPDE 116 (157)
T ss_dssp HHHHHTSSEEEEECCGGGCCHHHHHHHH-HHHH-TTCEEEEEECGG
T ss_pred HHHHHhCCEEEEEcCCCCCCccHHHHHH-HHHH-CCCeEEEEEcCC
Confidence 5789999999999997544221112222 2222 589998887554
No 473
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=61.72 E-value=2.5 Score=35.03 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=16.5
Q ss_pred ceEEEEEeecCCCccccc
Q psy8220 142 SITVGVVGECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vvG~pNVGKSsl~ 159 (161)
+-|++|+|-++||||+|+
T Consensus 153 GQr~~Ifgg~G~GKT~L~ 170 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLI 170 (482)
T ss_dssp TCEEEEEECTTSSHHHHH
T ss_pred CCeeeeecCCCCChHHHH
Confidence 469999999999999986
No 474
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.66 E-value=2 Score=37.78 Aligned_cols=20 Identities=5% Similarity=-0.031 Sum_probs=16.7
Q ss_pred CceEEEEEeecCCCcccccC
Q psy8220 141 TSITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~~ 160 (161)
.+--|.+-|.|++|||+|+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 44568899999999999874
No 475
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=61.15 E-value=4.3 Score=29.05 Aligned_cols=50 Identities=4% Similarity=0.030 Sum_probs=30.5
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCCCCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPS 68 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~Dl~~ 68 (161)
..++..||.+|.++++...-...-..+.+.+....+.+..+|+|+.|-..
T Consensus 85 ~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 85 EALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred HHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 45677899999999864321111123334443312467889999999654
No 476
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=60.75 E-value=2.1 Score=38.53 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=13.6
Q ss_pred EEEEEeecCCCccccc
Q psy8220 144 TVGVVGECNIAGSIRD 159 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~ 159 (161)
=|.|-|.+++|||||+
T Consensus 48 lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 48 LIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3567799999999996
No 477
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=60.42 E-value=2.2 Score=38.38 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=13.7
Q ss_pred EEEEEeecCCCccccc
Q psy8220 144 TVGVVGECNIAGSIRD 159 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~ 159 (161)
=|.|-|.+++|||||+
T Consensus 46 lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 46 LVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999996
No 478
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=60.04 E-value=9.3 Score=28.14 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=6.5
Q ss_pred CCcEE-EEeecCC
Q psy8220 54 GKKLV-IVINKAG 65 (161)
Q Consensus 54 ~k~~i-lVlNK~D 65 (161)
+.+++ +|+|+.|
T Consensus 181 ~~~~~gvV~N~~~ 193 (262)
T 2ph1_A 181 NTSVLGLVENMSY 193 (262)
T ss_dssp TCCEEEEEETTCC
T ss_pred CCCEEEEEECCCc
Confidence 44444 5666655
No 479
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=59.01 E-value=14 Score=28.07 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhccEEEEEEeCC
Q psy8220 13 VVQEIERSVVEAADVILEVVDAR 35 (161)
Q Consensus 13 ~~~~~~~~~i~~aDviL~VvD~~ 35 (161)
.+.++..+.-++.|+| ++|+.
T Consensus 202 ~l~~ll~~l~~~yD~V--IIDtp 222 (299)
T 3cio_A 202 RMRQLLEWANDHYDLV--IVDTP 222 (299)
T ss_dssp HHHHHHHHHHHHCSEE--EEECC
T ss_pred HHHHHHHHHHhCCCEE--EEcCC
Confidence 3555533334567854 56764
No 480
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=58.69 E-value=2.7 Score=30.63 Aligned_cols=17 Identities=12% Similarity=0.052 Sum_probs=14.4
Q ss_pred eEEEEEeecCCCccccc
Q psy8220 143 ITVGVVGECNIAGSIRD 159 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~ 159 (161)
-.++++|.+++||||+.
T Consensus 77 ~~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQV 93 (235)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CEEEEEeCCCCCcHHhH
Confidence 36899999999999853
No 481
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=58.08 E-value=4.3 Score=32.17 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=21.9
Q ss_pred HHHHHHHHHhHhhcCCCCCceEEEEEeecCCCccccc
Q psy8220 123 AELLMLLLGNYTRNKDIKTSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 123 ~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGKSsl~ 159 (161)
+.++.+.+...++.. ..|.+.|-+++||++++
T Consensus 146 m~~l~~~i~~~a~~~-----~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 146 MKEILEKIKKISCAE-----CPVLITGESGVGKEVVA 177 (387)
T ss_dssp HHHHHHHHHHHTTCC-----SCEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHhcCCC-----CCeEEecCCCcCHHHHH
Confidence 445555555544332 45799999999999875
No 482
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=55.73 E-value=8.9 Score=29.20 Aligned_cols=17 Identities=6% Similarity=0.045 Sum_probs=13.5
Q ss_pred eEEEEEe-ecCCCccccc
Q psy8220 143 ITVGVVG-ECNIAGSIRD 159 (161)
Q Consensus 143 ~~v~vvG-~pNVGKSsl~ 159 (161)
-.++|.| .|++||||++
T Consensus 105 kvI~vts~kgG~GKTtva 122 (299)
T 3cio_A 105 NILMITGATPDSGKTFVS 122 (299)
T ss_dssp CEEEEEESSSSSCHHHHH
T ss_pred eEEEEECCCCCCChHHHH
Confidence 4677777 4899999975
No 483
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=55.55 E-value=2.9 Score=35.43 Aligned_cols=16 Identities=6% Similarity=-0.062 Sum_probs=13.8
Q ss_pred EEEEEeecCCCccccc
Q psy8220 144 TVGVVGECNIAGSIRD 159 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~ 159 (161)
-+.+.|.|++||||++
T Consensus 166 ~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 166 ISVISGGPGTGKTTTV 181 (608)
T ss_dssp EEEEECCTTSTHHHHH
T ss_pred CEEEEeCCCCCHHHHH
Confidence 5777899999999875
No 484
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=55.12 E-value=18 Score=28.95 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=41.2
Q ss_pred CCcEEEEeecCCC--C-CcccccccHHHHHHHHhhhhccCCCCceeEEeecCCCCcc----hhhhhhhhccccccCHHHH
Q psy8220 54 GKKLVIVINKAGK--P-STKIQSGSMAQIFQTWIPYNSIQSIYSSPRFSSRSQKDAQ----TERDLKAINVSSCVGAELL 126 (161)
Q Consensus 54 ~k~~ilVlNK~Dl--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~~~~~~----~~~~~~~~~~~~~~g~~~L 126 (161)
.+|+++++|+.|- . +.+ ... +.+..|..... .+.+++++||.....-. .+...++.......|++.|
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~---~~~-~~~~~~~~~~~--p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~ 297 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKN---KYL-PKIKKWIDENS--PGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKI 297 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCC---SSH-HHHHHHHHTTS--TTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHH
T ss_pred cCceEEEEEecchhhcccch---HHH-HHHHHHHHhcC--CCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHH
Confidence 4899999999983 2 111 011 22344433211 13678999987531100 0112222222235789999
Q ss_pred HHHHHhHhh
Q psy8220 127 MLLLGNYTR 135 (161)
Q Consensus 127 ~~~l~~~~~ 135 (161)
.+...+.+.
T Consensus 298 i~~~~~~L~ 306 (392)
T 1ni3_A 298 IVTGYNALN 306 (392)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888877664
No 485
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=55.11 E-value=2.9 Score=34.91 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=16.7
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++-|++|+|-++||||+|+
T Consensus 174 rGQR~~I~g~~g~GKT~La 192 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIA 192 (515)
T ss_dssp TTCBEEEEEETTSSHHHHH
T ss_pred cCCEEEEEcCCCCCccHHH
Confidence 3468999999999999995
No 486
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=54.73 E-value=3 Score=34.65 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=17.0
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++-|++|+|-++||||+|+
T Consensus 164 kGqr~gIfgg~GvGKT~L~ 182 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLI 182 (498)
T ss_dssp TTCCEEEEECSSSSHHHHH
T ss_pred cCCeEEeecCCCCCchHHH
Confidence 4569999999999999986
No 487
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=54.16 E-value=18 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=19.1
Q ss_pred CHHHHHHHHHhHhhcCCCCCceEEEEEeecCCCc
Q psy8220 122 GAELLMLLLGNYTRNKDIKTSITVGVVGECNIAG 155 (161)
Q Consensus 122 g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pNVGK 155 (161)
+.-++++.|....... -+|++||++|+-.
T Consensus 91 s~~Dil~aL~~a~~~~-----~kIavVg~~~~~~ 119 (225)
T 2pju_A 91 SGYDVLQFLAKAGKLT-----SSIGVVTYQETIP 119 (225)
T ss_dssp CHHHHHHHHHHTTCTT-----SCEEEEEESSCCH
T ss_pred CHHHHHHHHHHHHhhC-----CcEEEEeCchhhh
Confidence 3456667776653321 3899999999743
No 488
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=53.81 E-value=2.7 Score=36.79 Aligned_cols=17 Identities=18% Similarity=-0.121 Sum_probs=15.0
Q ss_pred EEEEEeecCCCcccccC
Q psy8220 144 TVGVVGECNIAGSIRDL 160 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~~ 160 (161)
.++|+|..+.|||||+.
T Consensus 578 i~~I~GpNGsGKSTlLr 594 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLR 594 (765)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCCChHHHHH
Confidence 68899999999999864
No 489
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=53.61 E-value=15 Score=25.48 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCCCcEEEEeecCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAG 65 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~k~~ilVlNK~D 65 (161)
.+.+.+||+|+.++|..+.-+. -++ .+... .++|++++.+..+
T Consensus 72 ~~~i~~aD~vva~~~~~d~Gt~--~Ei-GyA~a-lgKPVi~l~~~~~ 114 (165)
T 2khz_A 72 LNWLQQADVVVAEVTQPSLGVG--YEL-GRAVA-LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHHCSEEEEECSSCCHHHH--HHH-HHHHH-TCSSEEEEECTTT
T ss_pred HHHHHhCCEEEEECCCCCCCHH--HHH-HHHHH-CCCEEEEEEcCCC
Confidence 5789999999998872111111 111 22223 5899999987765
No 490
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=51.94 E-value=3.1 Score=36.56 Aligned_cols=18 Identities=11% Similarity=-0.201 Sum_probs=15.4
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++|+|..+.|||||+.
T Consensus 608 ~i~~ItGpNGsGKSTlLr 625 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMR 625 (800)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCChHHHHH
Confidence 368899999999999864
No 491
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=51.69 E-value=15 Score=26.87 Aligned_cols=47 Identities=9% Similarity=0.025 Sum_probs=26.3
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCC-CCCcEEEEeecCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGT-PGKKLVIVINKAG 65 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~-~~k~~ilVlNK~D 65 (161)
..++..||.+|.++.+...-...-..+.+.+... .+.++.+|+|+.+
T Consensus 161 ~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 161 KNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp HHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred HHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 3456668888888876432111112334444442 2456778899984
No 492
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=51.64 E-value=30 Score=26.73 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=24.6
Q ss_pred cccCHHHHHHHHHhHhhcCCCCCceEEEEEeecC
Q psy8220 119 SCVGAELLMLLLGNYTRNKDIKTSITVGVVGECN 152 (161)
Q Consensus 119 ~~~g~~~L~~~l~~~~~~~~~~~~~~v~vvG~pN 152 (161)
...|++.+.++|..........-+++|-.||.|.
T Consensus 198 ~~dGIe~Ik~aL~~~~~~~~~~~~i~i~~v~~P~ 231 (308)
T 1q8k_A 198 GYEGIDAVKEALRAGLNCSTENMPIKINLIAPPR 231 (308)
T ss_dssp STTTHHHHHHHHHHHHHSSBTTBCEEEEEEETTE
T ss_pred CCChHHHHHHHHHHhhhccCcCccEEEEEECCCE
Confidence 3489999999998664433223458999999883
No 493
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=50.24 E-value=3.5 Score=34.93 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=15.5
Q ss_pred eEEEEEeecCCCcccccC
Q psy8220 143 ITVGVVGECNIAGSIRDL 160 (161)
Q Consensus 143 ~~v~vvG~pNVGKSsl~~ 160 (161)
-.++|.|.|+.|||+++.
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 468999999999999863
No 494
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=49.92 E-value=4 Score=34.58 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=13.5
Q ss_pred EEEEEeecCCCccccc
Q psy8220 144 TVGVVGECNIAGSIRD 159 (161)
Q Consensus 144 ~v~vvG~pNVGKSsl~ 159 (161)
-..|.|.|++|||+++
T Consensus 197 ~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTS 212 (624)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred CeEEECCCCCCHHHHH
Confidence 3667899999999875
No 495
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=49.68 E-value=2.9 Score=34.78 Aligned_cols=19 Identities=5% Similarity=0.052 Sum_probs=16.8
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++-|++|+|-++||||+|+
T Consensus 161 rGQR~~Ifg~~g~GKT~La 179 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIA 179 (502)
T ss_dssp TTCBCEEEECSSSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHH
Confidence 4568999999999999995
No 496
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=48.51 E-value=4.3 Score=34.43 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=12.6
Q ss_pred EEEEeecCCCcccccC
Q psy8220 145 VGVVGECNIAGSIRDL 160 (161)
Q Consensus 145 v~vvG~pNVGKSsl~~ 160 (161)
..|-|.|++|||+.|.
T Consensus 208 ~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred eEEECCCCCCHHHHHH
Confidence 3456999999998653
No 497
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=48.32 E-value=5.6 Score=31.41 Aligned_cols=18 Identities=0% Similarity=0.060 Sum_probs=14.0
Q ss_pred ceEEEEE-eecCCCccccc
Q psy8220 142 SITVGVV-GECNIAGSIRD 159 (161)
Q Consensus 142 ~~~v~vv-G~pNVGKSsl~ 159 (161)
...|+|. |..+|||||++
T Consensus 108 ~~vIav~s~KGGvGKTT~a 126 (398)
T 3ez2_A 108 AYVIFISNLKGGVSKTVST 126 (398)
T ss_dssp CEEEEECCSSSSSSHHHHH
T ss_pred CeEEEEEeCCCCccHHHHH
Confidence 3456666 89999999975
No 498
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=47.94 E-value=14 Score=26.38 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCC--CCcEEEEeecCCCCC
Q psy8220 20 SVVEAADVILEVVDARDPMGTRCKVAEDLVVGTP--GKKLVIVINKAGKPS 68 (161)
Q Consensus 20 ~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~--~k~~ilVlNK~Dl~~ 68 (161)
.++..||.+++++.+...-...-..+.+.+.... ....-+|+|++|-..
T Consensus 136 ~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 136 WVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred HHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 4566777777777654211111123344454311 345788999998543
No 499
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=47.80 E-value=3.2 Score=34.60 Aligned_cols=19 Identities=5% Similarity=0.031 Sum_probs=16.8
Q ss_pred CceEEEEEeecCCCccccc
Q psy8220 141 TSITVGVVGECNIAGSIRD 159 (161)
Q Consensus 141 ~~~~v~vvG~pNVGKSsl~ 159 (161)
++-|++|+|-++||||+|+
T Consensus 161 rGQR~~I~g~~g~GKT~La 179 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIA 179 (510)
T ss_dssp TTCBCEEEESTTSSHHHHH
T ss_pred cCCEEEEecCCCCCchHHH
Confidence 3568999999999999995
No 500
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=47.06 E-value=9.8 Score=27.59 Aligned_cols=46 Identities=7% Similarity=-0.011 Sum_probs=25.2
Q ss_pred HHHhhhccEEEEEEeCCCCCCCCcHHHHHHHhCCCC---------CcEEEEeecCC
Q psy8220 19 RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPG---------KKLVIVINKAG 65 (161)
Q Consensus 19 ~~~i~~aDviL~VvD~~~~~~~~~~~i~~~l~~~~~---------k~~ilVlNK~D 65 (161)
..++..||.+++|+++...-...-..+.+.+.. .+ ...-+|+|+.|
T Consensus 130 ~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~v~N~~~ 184 (260)
T 3q9l_A 130 LMALYFADEAIITTNPEVSSVRDSDRILGILAS-KSRRAENGEEPIKEHLLLTRYN 184 (260)
T ss_dssp HHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTT-SSHHHHTTCSCCEEEEEEEEEC
T ss_pred HHHHHhCCEEEEEecCChhHHHHHHHHHHHHHH-hccccccccCCcceEEEEecCC
Confidence 345567888888877542111111223344433 11 46788999987
Done!