RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8220
         (161 letters)



>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
           [TaxId: 1423]}
          Length = 273

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 19  RSVVEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQ 78
              ++  D++ E+VDAR PM +R  + ED++     K  ++++NKA K    +       
Sbjct: 10  TEKLKLIDIVYELVDARIPMSSRNPMIEDIL---KNKPRIMLLNKADKADAAVTQQWKEH 66

Query: 79  IFQTWIPYNSIQSIYSSPRFSSRSQKDAQTERDLKAINVSSCVGAELLMLLLGNYTRNK 137
                I   SI S+                +     +         +  L++G     K
Sbjct: 67  FENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGK 125


>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ),
          C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 225

 Score = 27.4 bits (60), Expect = 0.64
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 16 EIERSVVEAADVILEVVDARDPMGTRCKVAEDLVVG-TPGKKLVIVINKAGKPSTKIQSG 74
           + +  V   D ++ VV  + P  +   + + LV+      + V+VINK           
Sbjct: 2  LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK 61

Query: 75 SMAQIFQTWIPYNSI 89
                     Y  +
Sbjct: 62 VRELEEIYSGLYPIV 76


>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ),
          C-terminal domain {Bacillus subtilis [TaxId: 1423]}
          Length = 231

 Score = 25.8 bits (56), Expect = 2.2
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 16 EIERSVVEAADVILEVVDARDPMGTRCKVAEDLVV--GTPGKKLVIVINKAG 65
          E+ R  +   D  + V  A  P      + +  +V       + +I I K  
Sbjct: 2  ELIRPPICNVDQAVLVFSAVQPS-FSTALLDRFLVLVEANDIQPIICITKMD 52


>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase
          inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 96

 Score = 24.9 bits (54), Expect = 3.0
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 22 VEAADVILEVVDARDPMGTRCKVAEDLVVGTPGKKLVIVINKAGKPST 69
          +   D+I+E+        +  +V + L     G +  ++I++   PS+
Sbjct: 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGPSS 95


>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 85

 Score = 23.9 bits (52), Expect = 5.2
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 43 KVAEDLVVGTPGKKLVIVINKAGKPSTKIQSGSMAQIFQTWIPYNSIQSIYSSP 96
          K A +L V T  + L++V+++ G   T   +     I       N IQ+  ++P
Sbjct: 31 KKAFELSVLTGTQVLLLVVSETGLVYT-FSTPKFEPIVTQQEGRNLIQACLNAP 83


>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase
           subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
          Length = 363

 Score = 24.3 bits (52), Expect = 9.0
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 125 LLMLLLGNYTRNKDIKTSITVGVVGE 150
            LM +LG+    ++++  +     GE
Sbjct: 326 KLMWVLGHTQNLEEVRKMMLTNYAGE 351


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,897
Number of extensions: 22647
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 18
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.2 bits)