RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8222
(198 letters)
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 118 bits (297), Expect = 6e-32
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK-------------- 47
++ I+TS + A++ E+ EW +++ + + +
Sbjct: 301 KVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGV 360
Query: 48 PAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKP 107
+P +CM+C F++ RRHHC CG +VC CS ++ L +
Sbjct: 361 SLGERPPTLVPVTHVMMCMNCGCD-FSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRM 419
Query: 108 LRVCLTCYDVLSR 120
+VC C+ L +
Sbjct: 420 AKVCDGCFGELKK 432
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 108 bits (272), Expect = 5e-31
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 21 ATSTEKQEWMAHINKCIEDLLRKSGK---KPAATHAAVWIPDNEAAVCMHCKRTQFTVLS 77
E Q + + +++L R++ K W DNE CM C F+V
Sbjct: 25 TKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMAC-GKGFSVTV 83
Query: 78 RRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVL 118
RRHHCR+CG++ CA CS K L PS S KP+RVC C++ L
Sbjct: 84 RRHHCRQCGNIFCAECSAKNALTPS-SKKPVRVCDACFNDL 123
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania
major}
Length = 84
Score = 100 bits (250), Expect = 3e-28
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 45 GKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS 104
G W D +A C C FT RRHHCR CG V+C CS R +P +
Sbjct: 4 GSMGEKQSKGYWQEDEDAPACNGC-GCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRG 62
Query: 105 -AKPLRVCLTCYDVLSR 120
+P RVC CY L
Sbjct: 63 ITEPERVCDACYLALRS 79
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics
consortium, SGC, lipid BIND protein, transport protein;
1.09A {Homo sapiens}
Length = 90
Score = 97.6 bits (243), Expect = 5e-27
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 48 PAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKP 107
W+PD+EA CM+C + +FT RRHHCR CG V C C N++ L K
Sbjct: 6 VLGQKQPTWVPDSEAPNCMNC-QVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQ-YLEKE 63
Query: 108 LRVCLTCYDVLSRDKTVSGKP 128
RVC+ CY+ +S+ +
Sbjct: 64 ARVCVVCYETISKAQAFERMM 84
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics,
structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB:
2yqm_A
Length = 82
Score = 93.3 bits (232), Expect = 2e-25
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 50 ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLR 109
A W+ D+EA C C +F++ R+HHCR CG + C CS+ LPS KP+R
Sbjct: 7 ALKGHAWLKDDEATHCRQC-EKEFSISRRKHHCRNCGHIFCNTCSSNELALPS-YPKPVR 64
Query: 110 VCLTCYDVLSR 120
VC +C+ +L +
Sbjct: 65 VCDSCHTLLLQ 75
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide
binding, zinc binding, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 84
Score = 91.9 bits (228), Expect = 7e-25
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 49 AATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPS------ 102
++ ++ P N C C F+VL +R C CG+ C+ C + + S
Sbjct: 1 GSSGSSGRYPTNNFGNCTGC-SATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAP 59
Query: 103 -QSAKPLRVCLTCYDVLSRDKTVSG 126
+ + VC +C LS+ SG
Sbjct: 60 EAQRETVFVCASCNQTLSKSGPSSG 84
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Mus musculus} SCOP:
g.50.1.1
Length = 88
Score = 87.5 bits (217), Expect = 3e-23
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 56 WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
+ C C +FT+ + + C+ CG C C + L+P +VC C+
Sbjct: 3 SGSSGMESRCYGC-AVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCH 61
Query: 116 DVLSRDKTVSG 126
+L+R + +
Sbjct: 62 TILTRGSSDNA 72
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 87.0 bits (216), Expect = 4e-23
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 50 ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS-AKPL 108
+ A WI + CM C +F++L+R+HHCR CG V C S+ LP +P+
Sbjct: 2 SKTPADWIDSDA---CMICS-KKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPV 57
Query: 109 RVCLTCYDVLSRDKT 123
RVC +C++ T
Sbjct: 58 RVCDSCFEDYEFIVT 72
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 90.7 bits (225), Expect = 7e-22
Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 2 ELRNGWLI--QTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPD 59
+ + +L+ ++ + + T K++WM I ++ ++ H
Sbjct: 297 KWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATAN--GHDFQMFSF 354
Query: 60 NEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNK 96
E C C+ + + C +C + C +
Sbjct: 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 82.9 bits (204), Expect = 7e-20
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 29 WMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSV 88
I K + + + A A +A C C R QF V++R+HHCR CG +
Sbjct: 131 DTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRC-RVQFGVMTRKHHCRACGQI 189
Query: 89 VCAPCSNKRFLLPS-QSAKPLRVCLTCYDVLSRDK 122
C CS+K +P K +RVC CY+ L+R
Sbjct: 190 FCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKA 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 79.0 bits (194), Expect = 2e-18
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 1 MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDN 60
+R L + ++A ++ + + I K + + A A
Sbjct: 100 ENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTADTAPNWA 159
Query: 61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPS-QSAKPLRVCLTCYDVLS 119
+ VC C R +FT +R+HHCR CG V C C+ K+ LP K +RVC C+ L
Sbjct: 160 DGRVCHRC-RVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQ 218
Query: 120 R 120
R
Sbjct: 219 R 219
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 78.9 bits (194), Expect = 2e-17
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 2 ELRNGWLI--QTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPD 59
+ + +L+ ++ + + T K++WM I ++ ++ H
Sbjct: 469 KWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATAN--GHDFQMFSF 526
Query: 60 NEAAVCMHCK---RTQFTVLSRRHHCRKCGSVVCA----PCSNKRFLLPSQSAKP 107
E C C+ R F R H CR C PC P K
Sbjct: 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVPPCGRHGQDFPGTMKKD 581
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 54.5 bits (131), Expect = 3e-10
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK 43
+++ + + +S A + K+EW+ + + L K
Sbjct: 71 PMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSDK 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 54.0 bits (129), Expect = 6e-10
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 54 AVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLT 113
+ P C C F +R+ C C C CS++ R+CL
Sbjct: 11 SFPSPTGLEPSCKSC-GAHFANTARKQTCLDCKKNFCMTCSSQV-------GNGPRLCLL 62
Query: 114 CYDVLSRDKTVS 125
C +
Sbjct: 63 CQRFRATAFQRE 74
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 51.2 bits (122), Expect = 4e-08
Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 22/160 (13%)
Query: 4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAA--------- 54
+ I + + + E+ W+ I E + K+ + A
Sbjct: 328 EPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKQREKAYQARSQKTSGIG 387
Query: 55 -VWIPDNEAAVCMHCKRT-------QFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAK 106
+ + EA CK + ++ S+ + R + P N +
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLN-PKWNFNCQFFIKDLY 446
Query: 107 PLRVCLTCYDVLSRDKTVSGKPMAGNTATADKDVSRTSRS 146
+CLT +D RD S G T + S
Sbjct: 447 QDVLCLTLFD---RD-QFSPDDFLGRTEIPVAKIRTEQES 482
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 46.8 bits (111), Expect = 1e-06
Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 1 MELRNGWLI--QTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIP 58
+ ++N + + + + + A EK W+ + + + +
Sbjct: 324 VSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQ---- 379
Query: 59 DNEAAVCMHCKRTQFTVLSRRHH 81
+AA+ + ++ V R+ H
Sbjct: 380 KRQAAMTVRKA-SKQKVTQRKWH 401
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 44.6 bits (105), Expect = 2e-06
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 2 ELRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE 38
+ I S+ + VH + + QEWM +N+ +
Sbjct: 89 GSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK 126
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 43.5 bits (102), Expect = 9e-06
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 2 ELRNGWLIQTSSKS---FAVHAATSTEKQEWMAHINKCIEDLLRKSGKKP 48
E + +LI VHA++ E+ W+ I I L R +
Sbjct: 133 EEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGI 182
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 42.2 bits (98), Expect = 1e-05
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 3/75 (4%)
Query: 42 RKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLP 101
R + + C+ C + S C C VC C
Sbjct: 35 RIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC---GVETS 91
Query: 102 SQSAKPLRVCLTCYD 116
+ P+ +C C +
Sbjct: 92 NNRPHPVWLCKICLE 106
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 39.2 bits (91), Expect = 4e-04
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 1 MELRNGWLIQTSS--KSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
+ ++N + + + S + +KQ W+ + E +
Sbjct: 401 VSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETG 449
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 37.7 bits (86), Expect = 7e-04
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 56 WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
C C + +L+ R C +C VC CS+ + + +C C+
Sbjct: 62 DTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH------AHPEEQGWLCDPCH 115
Query: 116 D 116
Sbjct: 116 L 116
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 36.2 bits (84), Expect = 0.001
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAA 50
L++ K+F + A+ +KQEW+ I+ I LL+ P++
Sbjct: 73 LVKCFDKTFEISASDKKKKQEWIQAIHSTIH-LLKLGSSGPSS 114
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 36.8 bits (85), Expect = 0.003
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATH 52
+ ++ + + A T +EK W I + + +S H
Sbjct: 339 MSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQSVDGGHHHH 383
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 36.5 bits (84), Expect = 0.003
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 10 QTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMH 67
+ + + A T K W+ I K + L+ + A+ H A+ + H
Sbjct: 297 NAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQA--CREASQHRALEQSHSLEHHHHH 352
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 36.4 bits (84), Expect = 0.004
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 10 QTSSKSFAVHAATSTEKQEWMAHINKCIED--LLRKSGKKPAATH 52
+ + + + AA Q W+ H+ + +E + + P
Sbjct: 290 EGGIQRYVLQAADPAISQAWIKHVAQILESQRDFLNALQSPIEYQ 334
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 36.1 bits (83), Expect = 0.005
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 2 ELRNGWLIQTSSK-SFAVHAATSTEKQEWMAHINKCIE 38
E ++ + I + S A ++ EK WMA +
Sbjct: 312 EYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 349
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 34.4 bits (79), Expect = 0.005
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPA 49
+I + + A + E EWM H+ + + + G P+
Sbjct: 71 VILSDRPCLELSAESEAEMAEWMQHLCQAVSKGVIPQGVAPS 112
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 35.5 bits (82), Expect = 0.007
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 2 ELRNGWLI----QTSSKSFAVHAATSTEKQEWMAHINKCIE 38
++N + + + S++ ++ A + KQ+W+ I + E
Sbjct: 306 RVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAKE 346
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 34.3 bits (79), Expect = 0.007
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
+ ++F + A T E EW+ + + +
Sbjct: 83 LVFPFRTFYLCAKTGVEADEWIKILRWKLSQI 114
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 35.4 bits (81), Expect = 0.009
Identities = 4/37 (10%), Positives = 17/37 (45%)
Query: 11 TSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
+ F + ++ +++++ ++ + D R+ K
Sbjct: 339 RPERVFHLCCSSPESRKDFLKSVHSILRDKHRRQLLK 375
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 33.6 bits (77), Expect = 0.012
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINKCI 37
++T+ + + A Q+W+ I C+
Sbjct: 82 VKTTRRVYNFCAQDVPSAQQWVDRIQSCL 110
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 34.9 bits (80), Expect = 0.013
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 13 SKSFAVHAATSTEKQEWMAHINKCIEDLLRKSG 45
+ + + A TS++K WM + + + +
Sbjct: 383 PQIYELVALTSSDKNTWMELLEEAVRNAHHHHH 415
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 34.8 bits (80), Expect = 0.014
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 14 KSFAVHAATSTEKQEWMAHINKCIE 38
+ + + A TS++K WM + + +
Sbjct: 342 QIYELVALTSSDKNTWMELLEEAVR 366
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 33.1 bits (76), Expect = 0.014
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
+ T + AA E+ W+ INK I+ +
Sbjct: 71 ITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI 103
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 34.4 bits (79), Expect = 0.015
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINKCIED 39
TS + A++ KQ+W+ HI + I++
Sbjct: 279 TPTSDNKIVLKASSIENKQDWIKHIREVIQE 309
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 32.5 bits (74), Expect = 0.022
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
LI + F + A + E+Q W+ + L
Sbjct: 63 LIIPGEQHFYMKAVNAAERQRWLVALGSSKASLTDTRLVP 102
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 33.6 bits (76), Expect = 0.022
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
+ + + AA+ + +EW+ + ++DL
Sbjct: 178 ICAPDKRIYQFTAASPKDAEEWVQQLKFILQDL 210
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 34.1 bits (78), Expect = 0.023
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPA 49
++ + + A T +E++ W A I + L K PA
Sbjct: 341 TWDQEAQIYELVAQTVSERKNWCALITETAGSL-----KVPA 377
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 32.4 bits (74), Expect = 0.027
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
L +++ A + E ++W+ I+ ++DL
Sbjct: 75 LTSQDRRTYEFTATSPAEARDWVDQISFLLKDL 107
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 32.3 bits (73), Expect = 0.035
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 5 NGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+G +++ + + + A + EK+EWM I I
Sbjct: 87 DGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 119
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 32.1 bits (72), Expect = 0.039
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLL 41
++ ++ +++ AA+ E+ W+ I I L
Sbjct: 94 IVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 31.6 bits (72), Expect = 0.052
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 5 NGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED 39
N + + T+ ++F E+ +W++ + ++
Sbjct: 66 NKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS 100
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 32.8 bits (74), Expect = 0.056
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLL 41
+G I T + F T ++++EW+A K ++ +
Sbjct: 336 HWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPM 375
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 31.8 bits (72), Expect = 0.064
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
+I + + A++ E+ EW+ I K
Sbjct: 94 VITKDDTHYYIQASSKAERAEWIEAIKKLTSGP 126
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 31.7 bits (72), Expect = 0.064
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
+I + + AAT E+ EW+ I KSG
Sbjct: 90 IITADEVHYFLQAATPKERTEWIKAIQMASRTG--KSGPS 127
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 31.5 bits (71), Expect = 0.065
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSG 45
I S+ + + A + ++W+ +N+ + SG
Sbjct: 91 INALSQRYFLQANDQKDLKDWVEALNQASK-SGPSSG 126
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 32.3 bits (73), Expect = 0.099
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
++ + + A T +E++ W A I + L +
Sbjct: 494 TWDQEAQIYELVAQTVSERKNWCALITETAGSLKVPAHHH 533
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.10
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 46 KKPAATHAAVWIPD-NEAAVCMHCKRTQFTVLSRRHH----CRKCGSVV 89
++ A P+ N C CK ++ R C CG V+
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 30.5 bits (69), Expect = 0.15
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+ +++ T E + WM +
Sbjct: 89 AAHPNMRTYYFCTDTGKEMELWMKAMLDAA 118
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 30.1 bits (68), Expect = 0.19
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+I + + AAT E+ EW+ I
Sbjct: 79 IITADEVHYFLQAATPKERTEWIKAIQMAS 108
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 30.4 bits (68), Expect = 0.20
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 20 AATSTEKQEWMAHINKCIEDL 40
A T E+ WM +N+ + D+
Sbjct: 110 ADTKEERDLWMQKLNQVLVDI 130
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 30.1 bits (68), Expect = 0.22
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHA 53
I+T S+ + AAT W+ + + S P+ +
Sbjct: 75 IKTPSRVITLKAATKQAMLYWLQQLQMKRWE-FHNSPPAPSGPSS 118
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 31.0 bits (69), Expect = 0.26
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 26 KQEWMAHINKC--IEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHC- 82
K + + +C + + L +GK+ + A C C+ F +L +
Sbjct: 423 KYCLLRTLKQCQTLREALIAAGKEIIWHGR---TKEEPAHYCSICEVEVFDLLFVTNESN 479
Query: 83 -RKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYD 116
RK V C C+ K V L Y
Sbjct: 480 SRKTYIVHCQDCARKTSGNLEN-----FVVLEQYK 509
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 29.9 bits (67), Expect = 0.26
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
+ S + + + A + E+Q W++ + C + GK
Sbjct: 74 VNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKN 113
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 29.7 bits (67), Expect = 0.31
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+++ A + E++ W+ + +
Sbjct: 90 AEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 29.5 bits (66), Expect = 0.34
Identities = 1/43 (2%), Positives = 10/43 (23%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAAT 51
+ + ++ W+ + + + +
Sbjct: 81 AVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGP 123
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 29.3 bits (66), Expect = 0.37
Identities = 4/44 (9%), Positives = 15/44 (34%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAAT 51
+++ + A T + + W+ + + G+ +
Sbjct: 79 AEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYGQPRSPA 122
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 30.0 bits (67), Expect = 0.39
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINK---CIEDLLRKSGKKPAATHAAVWIPDNEAA 63
I + ++F + A + + +W + +++ + +R+ + A AV D
Sbjct: 126 IIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVGLI 183
Score = 28.8 bits (64), Expect = 1.0
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINK 35
N ++I T+++ +A T E W+ + +
Sbjct: 195 PNSFVIITANRVLHCNADTPEEMHHWITLLQR 226
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger
domain, metal binding protein; NMR {Rattus norvegicus}
PDB: 2cjs_C
Length = 62
Score = 27.8 bits (61), Expect = 0.48
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 60 NEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTC 114
+A C C +T+F H+C C + CA C + + +S K + VC C
Sbjct: 7 GDAPTCGICHKTKFADGCG-HNCSYCQTKFCARCGGR---VSLRSNKVMWVCNLC 57
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 28.9 bits (65), Expect = 0.55
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+++ A + E++ W+ + +
Sbjct: 79 AEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 29.4 bits (66), Expect = 0.84
Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 10/51 (19%)
Query: 42 RKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHH-----CRKCGS 87
S + PD VC C R RR+ C CG
Sbjct: 96 VGSKEDGGFVPV---SPD--MGVCEDCLRELKDPKDRRYRYPFINCTNCGP 141
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 28.2 bits (63), Expect = 0.84
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 5 NGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+ + S+ + A++ E +EW+ + +
Sbjct: 79 SWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 27.8 bits (62), Expect = 0.90
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINK 35
I + + + A +Q+W+ I +
Sbjct: 65 ISVNDSVWYLRAQDPDHRQQWIDAIEQ 91
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 76
Score = 27.2 bits (60), Expect = 0.94
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 64 VCMHCKRTQFTVLSRRHHCRKCGSVVCAPCS 94
C C+ + + + + CR C +VC C
Sbjct: 27 TCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 28.3 bits (63), Expect = 0.97
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 19 HAATSTEKQEWMAHINKCIEDLLR 42
+ TE + W + IE L+R
Sbjct: 105 QSDHETELRAWHRALRTVIERLVR 128
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 28.8 bits (64), Expect = 1.2
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+G +++ + + + A + EK+EWM I I
Sbjct: 294 ADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 327
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase;
HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 28.6 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 58 PDNEAAVCMHCKRTQFTVLSRRHH-----CRKCG 86
PD AA C C T RR+ C CG
Sbjct: 15 PD--AATCPACLAEMNTPGERRYRYPFINCTHCG 46
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 27.6 bits (61), Expect = 2.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIE 38
L S+ + A + E +EW+ +NK ++
Sbjct: 94 LKMQDKSSYLLAADSEVEMEEWITILNKILQ 124
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 28.3 bits (62), Expect = 2.1
Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 11/92 (11%)
Query: 27 QEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKC- 85
+ M H E L+R K + D A C C F +L
Sbjct: 402 LQSMKHCQVQRESLVRAGKKIAYQGR----VKDEPAYYCNECDVEVFNILFVTSENGSRN 457
Query: 86 -GSVVCAPCSNKRFLLPSQSAKPLRVCLTCYD 116
V C C+ +R V L Y
Sbjct: 458 TYLVHCEGCARRRSAGLQG-----VVVLEQYR 484
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 26.8 bits (59), Expect = 2.4
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 4 RNGWLIQTSSKS-FAVHAATSTEKQEWMAHINKCI 37
++ + + + A E W+ +N I
Sbjct: 82 KHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 2.7
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 20 AATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAA 63
AA+ +QEW K +E+ ++ ++ +N A
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI-----NNRIA 141
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 26.4 bits (58), Expect = 4.0
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIE 38
L + + + W I + I+
Sbjct: 93 LRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ 123
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 27.2 bits (59), Expect = 4.1
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 10 QTSSKSFAVHAATSTEKQEWMAH-----INKCIEDLLRKSGKKPAATHAAVWIPDN-EAA 63
SK V + T + E +NK +E + + + A + + +
Sbjct: 737 AAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRD 796
Query: 64 VCMHCKRTQFTVLSRRHHCRKCGSVVC 90
+ + + C KC + C
Sbjct: 797 SRRKEIKPKVVEGQKNLLCGKCKAYAC 823
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 26.0 bits (57), Expect = 4.3
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINK 35
++ K+ ++ A ++ + W +
Sbjct: 81 IVCRDGKTISLCAESTDDCLAWKFTLQD 108
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 26.1 bits (57), Expect = 4.4
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINKCIE 38
I ++ A + W ++
Sbjct: 89 IIRRGHNWVFKADSYESMMSWFDNLKILTS 118
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 25.2 bits (55), Expect = 7.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 65 CMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRF 98
C +C LS + G + C P N+ F
Sbjct: 45 CSYCNNK----LSLGTYASLHGRIYCKPHFNQLF 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 7.7
Identities = 25/189 (13%), Positives = 50/189 (26%), Gaps = 54/189 (28%)
Query: 1 MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDN 60
++LR L +K+ + + K W+A D+ + W+ N
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKT-WVA------LDVCLSYKVQCKMDFKIFWL--N 188
Query: 61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSN---------------KRFLLPSQSA 105
+C + + + + + + +R L +
Sbjct: 189 LK----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL----KS 240
Query: 106 KPLRVCLTCYD------------------VLSRDKTVSGKPMAGNTATADKDVSRTSRSD 147
KP CL + +R K V+ A T +S S
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT----THISLDHHSM 296
Query: 148 SSGEDDSDD 156
+ D+
Sbjct: 297 TLTPDEVKS 305
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A
{Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Length = 308
Score = 26.1 bits (57), Expect = 8.1
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEA 62
+ G I + + + ++ H+ + I L +G++P + P+
Sbjct: 117 VAAGHEICSHGYRWIDYQYMDEAQER--EHMLEAIRILTELTGERPLGWYTGRTGPNTRR 174
Query: 63 AVCMH 67
V
Sbjct: 175 LVMEE 179
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 26.2 bits (58), Expect = 8.5
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 5/81 (6%)
Query: 78 RRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTVSGKPM---AGNTA 134
HC CG V P + L K C C +++ G+ + T
Sbjct: 135 AHCHCIGCGKVY--PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETW 192
Query: 135 TADKDVSRTSRSDSSGEDDSD 155
D + R + S
Sbjct: 193 LNDSEWLREKITTSGKHPQQP 213
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 26.0 bits (57), Expect = 9.1
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 47 KPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAK 106
K H C +C + ++++ C CG V CS K
Sbjct: 205 KYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLK 264
Query: 107 PLR 109
++
Sbjct: 265 HVK 267
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 25.5 bits (55), Expect = 9.9
Identities = 3/39 (7%), Positives = 17/39 (43%)
Query: 1 MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED 39
+ + + + + + + A + + W+ + + I++
Sbjct: 84 CQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKN 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.403
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,881,117
Number of extensions: 154299
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 117
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)