RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8222
(198 letters)
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 71.6 bits (175), Expect = 1e-17
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 56 WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
W DNE CM C + F+V RRHHCR+CG++ CA CS K L PS S KP+RVC C+
Sbjct: 2 WAEDNEVQNCMACGK-GFSVTVRRHHCRQCGNIFCAECSAKNALTPS-SKKPVRVCDACF 59
Query: 116 DVL 118
+ L
Sbjct: 60 NDL 62
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 69.3 bits (169), Expect = 1e-16
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 49 AATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPS-QSAKP 107
A A W VC C+ +FT +R+HHCR CG V C C+ K+ LP K
Sbjct: 3 TADTAPNWADGR---VCHRCRV-EFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKE 58
Query: 108 LRVCLTCYDVLSR 120
+RVC C+ L R
Sbjct: 59 VRVCDGCFAALQR 71
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 68.9 bits (168), Expect = 2e-16
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR 120
+ C C +FT+ + + C+ CG C C + L+P +VC C+ +L+R
Sbjct: 8 MESRCYGCAV-KFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66
Query: 121 DK 122
Sbjct: 67 GS 68
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 63.5 bits (154), Expect = 1e-14
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 56 WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS-AKPLRVCLTC 114
WI + CM C + +F++L+R+HHCR CG V C S+ LP +P+RVC +C
Sbjct: 2 WIDSD---ACMICSK-KFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSC 57
Query: 115 YD 116
++
Sbjct: 58 FE 59
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 60.5 bits (146), Expect = 9e-13
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 56 WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
+ + C+ C + S C C VC C + + P+ +C C
Sbjct: 42 NVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---SNNRPHPVWLCKICL 98
Query: 116 D 116
+
Sbjct: 99 E 99
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 55.0 bits (132), Expect = 2e-11
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 65 CMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS 119
C C F +R+ C C C CS SQ R+CL C +
Sbjct: 3 CKSCG-AHFANTARKQTCLDCKKNFCMTCS-------SQVGNGPRLCLLCQRFRA 49
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 109
Score = 42.4 bits (99), Expect = 2e-06
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 1 MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK 43
+++ + + +S A + K+EW+ + + L K
Sbjct: 66 PPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSDK 108
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 142
Score = 42.9 bits (100), Expect = 3e-06
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 1 MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
+ I + + + A + E+ W+ I E + KK
Sbjct: 95 SGDEPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIETEKKK 141
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 140
Score = 37.8 bits (87), Expect = 2e-04
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 4 RNGWLIQTSS-----KSFAVHAATSTEKQEWMAHINKCIED 39
+ + I +S + + + A TS++K WM + + + +
Sbjct: 99 KRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 139
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 147
Score = 37.4 bits (86), Expect = 3e-04
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKS 44
+ + + + A T K W+ I K + L+
Sbjct: 92 TKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQAC 134
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 36.9 bits (85), Expect = 3e-04
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 5 NGWLIQTSS--KSFAVHAATSTEKQEWMAHINKCIED 39
W+ +T + + A++ KQ+W+ HI + I++
Sbjct: 83 ALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 119
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 132
Score = 36.6 bits (84), Expect = 5e-04
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPA 49
+ I S+ + VH + + QEWM +N+ KSG
Sbjct: 91 DCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT-----KSGPSSG 132
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein
SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 35.6 bits (81), Expect = 6e-04
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 7 WLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
L +++ A + E ++W+ I+ ++DL
Sbjct: 72 ELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL 105
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 162
Score = 35.5 bits (81), Expect = 0.002
Identities = 5/40 (12%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 1 MELRNGWLI--QTSSKSFAVHAATSTEKQEWMAHINKCIE 38
+ ++N + + + + + A EK W+ + +
Sbjct: 94 VSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERK 133
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange
factor 12 {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 114
Score = 34.6 bits (79), Expect = 0.002
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 4 RNGWLIQTSSKSFAV---HAATSTEKQEWMAHINK 35
+ ++I S + A T +EK W I +
Sbjct: 76 KALFVISMSDNGAQIYELVAQTVSEKTVWQDLICR 110
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 34.1 bits (77), Expect = 0.006
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 8 LIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
+ + + AA+ + +EW+ + ++DL
Sbjct: 176 ICAPDKRIYQFTAASPKDAEEWVQQLKFILQDL 208
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 32.8 bits (74), Expect = 0.006
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 5 NGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
N + I T+S++F V A + E W+ ++ I
Sbjct: 67 NLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAI 99
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 33.1 bits (75), Expect = 0.008
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 7 WLIQTSSKSFAVHAATSTEKQEWMAHINK 35
+I S A ++ EK WMA +
Sbjct: 98 EIILKDENSVIFSAKSAEEKNNWMAALIS 126
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein
APS {Mouse (Mus musculus) [TaxId: 10090]}
Length = 136
Score = 28.6 bits (63), Expect = 0.30
Identities = 7/36 (19%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 4 RNGWLIQTSSKS-FAVHAATSTEKQEWMAHINKCIE 38
N ++++ + + + + S +K W+A I C++
Sbjct: 95 DNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD 130
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 113
Score = 28.0 bits (61), Expect = 0.37
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 9 IQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
T + AA E+ W+ INK I+ +
Sbjct: 72 TTTKQQDHFFQAAFLEERDAWVRDINKAIKCI 103
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 117
Score = 28.0 bits (61), Expect = 0.42
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+ + ++T+ + + A Q+W+ I C+
Sbjct: 77 KAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL 110
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 116
Score = 27.9 bits (61), Expect = 0.44
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 7 WLIQTSSKSFAVHAATSTEKQEWMAHINK 35
+I + + A++ E+ EW+ I K
Sbjct: 86 KVITKDDTHYYIQASSKAERAEWIEAIKK 114
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding
protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 27.2 bits (59), Expect = 0.68
Identities = 3/31 (9%), Positives = 12/31 (38%)
Query: 7 WLIQTSSKSFAVHAATSTEKQEWMAHINKCI 37
+++ + A T + + W+ + +
Sbjct: 76 TAEHPGMRTYVLAADTLEDLRGWLRALGRAS 106
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing
protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 26.8 bits (58), Expect = 0.74
Identities = 6/32 (18%), Positives = 20/32 (62%)
Query: 4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINK 35
+ W +Q + +S+ + A+++ +Q+W+ ++
Sbjct: 65 GHVWKLQWAKQSWYLSASSAELQQQWLETLST 96
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 25.7 bits (56), Expect = 0.94
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 63 AVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNK 96
C +C + ++++ C CG V CS
Sbjct: 16 HWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKH 49
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 24.6 bits (53), Expect = 2.1
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 63 AVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNK 96
C HC + ++ + C CG V C K
Sbjct: 12 TFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 25.4 bits (54), Expect = 3.0
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 7 WLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSG 45
++I S+ + + A + ++W+ +N+ SG
Sbjct: 89 FVINALSQRYFLQANDQKDLKDWVEALNQAS-KSGPSSG 126
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 23.7 bits (50), Expect = 5.3
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 57 IPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYD 116
+ D + VC C R C V C + + +A +C Y+
Sbjct: 1 MEDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQ--ICGVVYN 58
Query: 117 V 117
Sbjct: 59 T 59
>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 119
Score = 24.5 bits (53), Expect = 5.8
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 16 FAVHAATSTEKQEWMAHINKCIEDLLRK 43
+ ++ W+ I + E +
Sbjct: 90 PKDFETSEYVRKAWLRDIAEEQEKYAAE 117
>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 24.7 bits (52), Expect = 6.3
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 7 WLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
L S+ + A + E +EW+ +NK ++ + ++
Sbjct: 93 ELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQE 133
>d2ae0x1 b.52.1.4 (X:3-337) Membrane-bound lytic murein
transglycosylase A, MLTA {Escherichia coli [TaxId: 562]}
Length = 335
Score = 25.2 bits (55), Expect = 6.4
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 185 GYYCPEIEGTRK 196
GYY P I+
Sbjct: 98 GYYTPVIQARHT 109
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus
suis [TaxId: 1307]}
Length = 151
Score = 24.3 bits (52), Expect = 8.4
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 16 FAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPA 49
H +E ++++ E L+ G +
Sbjct: 35 MIWHPKMDEYMEEIDGYLDEMSERLITLGGAPFS 68
>d2bk6a1 a.25.1.1 (A:7-156) Dodecameric ferritin homolog {Listeria
innocua [TaxId: 1642]}
Length = 150
Score = 24.3 bits (52), Expect = 8.6
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 16 FAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAA 50
F +H E+ +++ E LL G +
Sbjct: 34 FTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFST 68
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo
sapiens) [TaxId: 9606]}
Length = 56
Score = 22.9 bits (49), Expect = 8.7
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 79 RHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTC 114
+ C + VC PC + L CL C
Sbjct: 23 KEACGELTGTVCEPCPPGTY---IAHLNGLSKCLQC 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.403
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 722,590
Number of extensions: 30874
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 51
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)