BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8224
(766 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TUA|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Ape0754 From Aeropyrum Pernix
Length = 191
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 67 LKSRNVEIRLSPETEDIS--NLQKAADFVKAFVYGFXXXXXXXXXXXXXXFIESFEIKDV 124
+ + N + + PE E I NL KAA+ VKA GF + + D+
Sbjct: 39 VDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEEDQILV----VVDL 94
Query: 125 KTLKGD---HLSRAIGRLAGKGGRTKFTIENITKTRIVIADSKIHVLGSYQNVQVALKAL 181
K + GD HL R GR+ G+GGR + TIE +T T I + + ++ ++G Y+ A +A+
Sbjct: 95 KQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAI 154
Query: 182 SNLILGSPPNKVY 194
L G + VY
Sbjct: 155 EMLAEGRMHSTVY 167
>pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus
Horikoshii Ot3
pdb|3AEV|B Chain B, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
Length = 219
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 2/162 (1%)
Query: 34 VPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFV 93
V +P R L + I + K ++ + ++ V I + ETED + KA D V
Sbjct: 38 VKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIV 97
Query: 94 KAFVYGFXXXXXXXXXXXXXXFIESFEIKDVKT-LKGDHLSRAIGRLAGKGGRTKFTIEN 152
A GF ++E + D+ + + L R GR+ G+ GRT+ IE
Sbjct: 98 LAIGRGFSPERAFRLLNEGE-YLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEE 156
Query: 153 ITKTRIVIADSKIHVLGSYQNVQVALKALSNLILGSPPNKVY 194
++ + + + ++G+ +++A A+ L GSP VY
Sbjct: 157 MSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVY 198
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLR 679
+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR LR
Sbjct: 198 LYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLR 255
Query: 680 MSKCFDCTCDRCK 692
CF+C C RC+
Sbjct: 256 DQYCFECDCFRCQ 268
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 555 GIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHL 614
G+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR L
Sbjct: 197 GLYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQL 254
Query: 615 R 615
R
Sbjct: 255 R 255
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 365 GRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
G + A +R GE++ PL + +C G + + E L +CS C
Sbjct: 16 GNGLRAVTPLRPGELLFRSDPL-------AYTVCKGSRGVVCDRCLLGKEKLX--RCSQC 66
Query: 425 GWP-LCAPRC--KSLPSHQKECKLMK 447
C+ +C K+ P H++ECK +K
Sbjct: 67 RVAKYCSAKCQKKAWPDHKRECKCLK 92
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLR 679
+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR LR
Sbjct: 199 LYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 256
Query: 680 MSKCFDCTCDRCK 692
CF+C C RC+
Sbjct: 257 DQYCFECDCFRCQ 269
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 555 GIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHL 614
G+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR L
Sbjct: 198 GLYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 255
Query: 615 R 615
R
Sbjct: 256 R 256
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 365 GRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
G + A +R GE++ PL + +C G + + E L +CS C
Sbjct: 17 GNGLRAVTPLRPGELLFRSDPL-------AYTVCKGSRGVVCDRCLLGKEKL--MRCSQC 67
Query: 425 GWP-LCAPRC--KSLPSHQKECKLMK 447
C+ +C K+ P H++ECK +K
Sbjct: 68 RVAKYCSAKCQKKAWPDHKRECKCLK 93
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLR 679
+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR LR
Sbjct: 197 LYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 254
Query: 680 MSKCFDCTCDRCK 692
CF+C C RC+
Sbjct: 255 DQYCFECDCFRCQ 267
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 555 GIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHL 614
G+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR L
Sbjct: 196 GLYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 253
Query: 615 R 615
R
Sbjct: 254 R 254
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 365 GRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
G + A +R GE++ PL + +C G + + E L +CS C
Sbjct: 15 GNGLRAVTPLRPGELLFRSDPL-------AYTVCKGSRGVVCDRCLLGKEKL--MRCSQC 65
Query: 425 GWP-LCAPRC--KSLPSHQKECKLMK 447
C+ +C K+ P H++ECK +K
Sbjct: 66 RVAKYCSAKCQKKAWPDHKRECKCLK 91
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLR 679
+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR LR
Sbjct: 198 LYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 255
Query: 680 MSKCFDCTCDRCK 692
CF+C C RC+
Sbjct: 256 DQYCFECDCFRCQ 268
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 555 GIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHL 614
G+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR L
Sbjct: 197 GLYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 254
Query: 615 R 615
R
Sbjct: 255 R 255
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 365 GRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
G + A +R GE++ PL + +C G + + E L +CS C
Sbjct: 16 GNGLRAVTPLRPGELLFRSDPL-------AYTVCKGSRGVVCDRCLLGKEKL--MRCSQC 66
Query: 425 GWP-LCAPRC--KSLPSHQKECKLMK 447
C+ +C K+ P H++ECK +K
Sbjct: 67 RVAKYCSAKCQKKAWPDHKRECKCLK 92
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLR 679
+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR LR
Sbjct: 197 LYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 254
Query: 680 MSKCFDCTCDRCK 692
CF+C C RC+
Sbjct: 255 DQYCFECDCFRCQ 267
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 555 GIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHL 614
G+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR L
Sbjct: 196 GLYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 253
Query: 615 R 615
R
Sbjct: 254 R 254
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 365 GRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
G + A +R GE++ PL + +C G + + E L +CS C
Sbjct: 15 GNGLRAVTPLRPGELLFRSDPL-------AYTVCKGSRGVVCDRCLLGKEKL--MRCSQC 65
Query: 425 GWP-LCAPRC--KSLPSHQKECKLMK 447
C+ +C K+ P H++ECK +K
Sbjct: 66 RVAKYCSAKCQKKAWPDHKRECKCLK 91
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLR 679
+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR LR
Sbjct: 233 LYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 290
Query: 680 MSKCFDCTCDRCK 692
CF+C C RC+
Sbjct: 291 DQYCFECDCFRCQ 303
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 555 GIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHL 614
G+Y ++L+H+C PN IV L L A+ +I G+ ++ Y + +RR L
Sbjct: 232 GLYPSISLLNHSCDPNCS--IVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 289
Query: 615 R 615
R
Sbjct: 290 R 290
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 365 GRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
G + A +R GE++ PL + +C G + + E L +CS C
Sbjct: 51 GNGLRAVTPLRPGELLFRSDPL-------AYTVCKGSRGVVCDRCLLGKEKL--MRCSQC 101
Query: 425 GWP-LCAPRC--KSLPSHQKECKLMK 447
C+ +C K+ P H++ECK +K
Sbjct: 102 RVAKYCSAKCQKKAWPDHKRECKCLK 127
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSL-QLIALVNIRKGDIISTTYTQPFWGTMDRRLHL 678
I+ A+++H+C PN VIV +L ++ A+ I GD + T+Y + T DR L
Sbjct: 198 IFPDVALMNHSCCPN---VIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRL 254
Query: 679 RMSKCFDCTCDRC----KDPTELET 699
R S F C C C KD ++E
Sbjct: 255 RDSYFFTCECRECTTKDKDKAKVEV 279
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 304 CQLNVDKKMDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYKVV 359
C L V ++ +C + KCG C Q FYC QK+ W HK C+ V+
Sbjct: 41 CVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVL 96
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 555 GIYMKTAMLSHNCKPNTKHVIVNEDFSL-QLIALVNICKGDIISTTYTQPFWGTMDRRLH 613
I+ A+++H+C PN VIV +L ++ A+ I GD + T+Y + T DR
Sbjct: 197 AIFPDVALMNHSCCPN---VIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDR 253
Query: 614 LRMSKWI 620
LR S +
Sbjct: 254 LRDSYFF 260
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSL-QLIALVNIRKGDIISTTYTQPFWGTMDRRLHL 678
I+ A+++H+C PN VIV +L ++ A+ I+ G+ + T+Y + T DR L
Sbjct: 198 IFPDVALMNHSCCPN---VIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRL 254
Query: 679 RMSKCFDCTCDRC 691
R S F C C C
Sbjct: 255 RDSYFFTCECQEC 267
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 317 CEVC--KVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCA 354
CE C + KCG C Q FYC+ QK+ W HK C+
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLECS 91
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 528 ETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSL-QLIA 586
++++ + ++ N F I I+ A+++H+C PN VIV +L ++ A
Sbjct: 170 DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPN---VIVTYKGTLAEVRA 226
Query: 587 LVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWI 620
+ I G+ + T+Y + T DR LR S +
Sbjct: 227 VQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFF 260
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSL-QLIALVNIRKGDIISTTYTQPFWGTMDRRLHL 678
I+ A+++H+C PN VIV +L ++ A+ I+ G+ + T+Y + T DR L
Sbjct: 198 IFPDVALMNHSCCPN---VIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRL 254
Query: 679 RMSKCFDCTCDRC 691
R S F C C C
Sbjct: 255 RDSYFFTCECQEC 267
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 317 CEVC--KVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCA 354
CE C + KCG C Q FYC+ QK+ W HK C+
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLECS 91
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 528 ETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSL-QLIA 586
++++ + ++ N F I I+ A+++H+C PN VIV +L ++ A
Sbjct: 170 DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPN---VIVTYKGTLAEVRA 226
Query: 587 LVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWI 620
+ I G+ + T+Y + T DR LR S +
Sbjct: 227 VQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFF 260
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSL-QLIALVNIRKGDIISTTYTQPFWGTMDRRLHL 678
I+ A+++H+C PN VIV +L ++ A+ I+ G+ + T+Y + T DR L
Sbjct: 198 IFPDVALMNHSCCPN---VIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRL 254
Query: 679 RMSKCFDCTCDRC 691
R S F C C C
Sbjct: 255 RDSYFFTCECQEC 267
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 317 CEVC--KVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCA 354
CE C + KCG C Q FYC+ QK+ W HK C+
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLECS 91
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 528 ETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSL-QLIA 586
++++ + ++ N F I I+ A+++H+C PN VIV +L ++ A
Sbjct: 170 DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPN---VIVTYKGTLAEVRA 226
Query: 587 LVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWI 620
+ I G+ + T+Y + T DR LR S +
Sbjct: 227 VQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFF 260
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 27/141 (19%)
Query: 577 NEDFSLQLIA----LVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWIYMKTAMLSHNCK 632
++ FS+Q I+ ++N C G +S D+R + I+ +++H+C
Sbjct: 162 SQQFSMQYISHIFGVIN-CNGFTLS-----------DQRGLQAVGVGIFPNLGLVNHDCW 209
Query: 633 PNTKHVIVNED-----------FSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMS 681
PN + N + ++L AL I +G+ ++ +Y + +RR L+
Sbjct: 210 PNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQ 269
Query: 682 KCFDCTCDRCKDPTELETYLG 702
FDC+C+ C+ + + +L
Sbjct: 270 YYFDCSCEHCQKGLKDDLFLA 290
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 526 SEETILRIAGILDTNAFDI--RRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNED---- 579
S + I I G+++ N F + +R + + + GI+ +++H+C PN + N +
Sbjct: 166 SMQYISHIFGVINCNGFTLSDQRGLQAVGV-GIFPNLGLVNHDCWPNCTVIFNNGNHEAV 224
Query: 580 -------FSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHLR 615
++L AL I +G+ ++ +Y + +RR L+
Sbjct: 225 KSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLK 267
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 327 KCGGCNQVFYCSKSHQKQHWKEHKPGCA---KYKVVRND 362
+CG C YC ++ QK W HK CA KY V N+
Sbjct: 64 RCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNE 102
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain (Leu384-Cys430)
Of Human Zinc Finger Mynd Domain Containing Protein 10
Length = 60
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 316 KCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCA 354
+C C AS +C C +YC + Q +HW++H C+
Sbjct: 17 RCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCS 55
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 316 KCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGC 353
+C C AS +C C +YC + Q +HW++H C
Sbjct: 17 RCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 54
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And Bs69
Mynd Domains
Length = 47
Score = 35.8 bits (81), Expect = 0.098, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 317 CEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
C C A +C GC++V YCS Q++ WK+H+ C +
Sbjct: 7 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ 45
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 624 TAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKC 683
A ++H+C+PN K V D + + AL +I G+ IS Y F+G + +C
Sbjct: 206 AAFINHDCRPNCKFVSTGRDTAC-VKALRDIEPGEEISCYYGDGFFGENN-----EFCEC 259
Query: 684 FDCTCDR 690
+ TC+R
Sbjct: 260 Y--TCER 264
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 524 DVSEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQ 583
++ E +LR N F + S K + A ++H+C+PN K V D +
Sbjct: 174 EIEENXLLRHG----ENDFSVXYSTRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTAC- 228
Query: 584 LIALVNICKGDIISTTYTQPFWG 606
+ AL +I G+ IS Y F+G
Sbjct: 229 VKALRDIEPGEEISCYYGDGFFG 251
>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti
(Protein Mtg8)
Length = 60
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 308 VDKKMDSGK-CEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCA 354
++++ DS + C C AS C GCN YC Q + W++H C+
Sbjct: 8 INQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICS 55
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 314 SGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
S C C AS C GCN YC Q + W++H C +
Sbjct: 17 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQ 58
>pdb|2OD1|A Chain A, Solution Structure Of The Mynd Domain From Human Aml1-Eto
Length = 60
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 314 SGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
S C C AS C GCN YC Q + W++H C +
Sbjct: 13 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQ 54
>pdb|2D8V|A Chain A, Solution Structure Of The B-Box Domain Of The Zinc Finger
Fyve Domain-Containing Protein 19 From Mus Musculus
Length = 67
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 317 CEVCKVAASLKCGGCNQVFYCSKSHQKQH----WKEHK 350
C +C A+L+C GC+ YC++ ++ H KEH+
Sbjct: 11 CCICNEDATLRCAGCDGDLYCARCFREGHDNFDLKEHQ 48
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 625 AMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCF 684
A ++H+CKPN K V + + + + L +I GD ++ Y + F+G +
Sbjct: 178 AFINHDCKPNCKFVPADGNAAC-VKVLRDIEPGDEVTCFYGEGFFGEKNEH--------- 227
Query: 685 DCTCDRCKDPTE 696
C C C+ E
Sbjct: 228 -CECHTCERKGE 238
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 526 SEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLI 585
++E +LR AG N F I S K + A ++H+CKPN K V + + + +
Sbjct: 147 ADEGLLR-AG---ENDFSIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPADGNAAC-VK 201
Query: 586 ALVNICKGDIISTTYTQPFWG 606
L +I GD ++ Y + F+G
Sbjct: 202 VLRDIEPGDEVTCFYGEGFFG 222
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 306 LNVDKKMDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
++ ++K S C C A +C GC++V YCS Q++ WK+H+ C +
Sbjct: 3 MDAERKEQS--CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ 50
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 494 DAHLNERINTKLYEIYRVNLVRFIKDVLHMDVSEETILRIAGILDTNAFDIRRSVGKIKI 553
DA + +L+E +L FI + +SE L + I + +
Sbjct: 116 DAMRTTQNPDELWEFIADSLKAFIDEQFPQGISEPIPLGFTFSFPASQNKINEGILQRWT 175
Query: 554 RGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQP 603
+G + + +H+ P + I + ++++AL+N G ++++ YT P
Sbjct: 176 KGFDIPN-IENHDVVPMLQKQITKRNIPIEVVALINDTTGTLVASYYTDP 224
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 282 LLQIYETSVEDQKCQLNVDDQKCQLNVDKKMDSGKCEVCKVAASLKCGGC-NQVFYCSKS 340
+ QI++T +Q + DD++ + N K+ G CEVC+ KC C + V +
Sbjct: 26 VYQIFDTFFAEQ---IEKDDREDKENAFKRRRCGVCEVCQQPECGKCKACKDMVKFGGSG 82
Query: 341 HQKQHWKEHK 350
KQ +E +
Sbjct: 83 RSKQACQERR 92
>pdb|3KRM|A Chain A, Imp1 Kh34
pdb|3KRM|B Chain B, Imp1 Kh34
pdb|3KRM|C Chain C, Imp1 Kh34
Length = 163
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK---------IHVLGSYQNVQVALKALSN 183
+ A GR+ GKGG+T ++N+T +V+ + + ++G + Q+A + + +
Sbjct: 93 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152
Query: 184 LI 185
++
Sbjct: 153 IL 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,699,542
Number of Sequences: 62578
Number of extensions: 793955
Number of successful extensions: 1857
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1788
Number of HSP's gapped (non-prelim): 58
length of query: 766
length of database: 14,973,337
effective HSP length: 106
effective length of query: 660
effective length of database: 8,340,069
effective search space: 5504445540
effective search space used: 5504445540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)