Query psy8224
Match_columns 766
No_of_seqs 569 out of 2613
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 21:52:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tua_A Hypothetical protein AP 100.0 4.3E-44 1.5E-48 353.1 13.1 168 32-200 6-173 (191)
2 2e3u_A PH-DIM2P, hypothetical 100.0 6.9E-39 2.4E-43 324.0 13.6 185 16-201 19-205 (219)
3 3n71_A Histone lysine methyltr 100.0 8.3E-39 2.8E-43 364.6 8.7 269 355-703 8-291 (490)
4 3qww_A SET and MYND domain-con 100.0 8E-39 2.7E-43 359.4 8.3 253 355-698 8-274 (433)
5 3qwp_A SET and MYND domain-con 100.0 4.4E-38 1.5E-42 353.7 3.6 257 356-703 7-279 (429)
6 2jvz_A KH type-splicing, FAR u 99.5 1.1E-13 3.9E-18 134.4 12.1 140 30-187 2-160 (164)
7 3rq4_A Histone-lysine N-methyl 99.5 5.5E-15 1.9E-19 151.7 1.6 104 584-698 122-240 (247)
8 2anr_A Neuro-oncological ventr 99.4 6.5E-13 2.2E-17 131.0 12.3 146 30-190 6-178 (178)
9 1j4w_A FUSE binding protein; s 99.4 7.4E-13 2.5E-17 130.1 11.3 140 30-185 3-174 (174)
10 3krm_A Insulin-like growth fac 99.4 1.4E-12 4.8E-17 126.6 12.4 136 30-187 3-156 (163)
11 3s8p_A Histone-lysine N-methyl 99.3 3.4E-13 1.2E-17 139.8 1.6 63 621-694 203-265 (273)
12 2jzx_A Poly(RC)-binding protei 99.3 9.2E-12 3.2E-16 120.4 10.6 137 30-185 5-157 (160)
13 1n3j_A A612L, histone H3 lysin 99.3 8.4E-13 2.9E-17 121.4 1.8 87 584-671 18-112 (119)
14 2w5y_A Histone-lysine N-methyl 99.1 4E-11 1.4E-15 119.1 5.5 61 623-692 124-188 (192)
15 2qnd_A FMR1 protein; KH domain 99.0 1.5E-09 5.2E-14 102.9 11.2 125 30-187 4-142 (144)
16 3ope_A Probable histone-lysine 98.9 8.1E-10 2.8E-14 112.5 5.5 59 623-690 146-206 (222)
17 3ooi_A Histone-lysine N-methyl 98.9 1.3E-09 4.6E-14 111.6 5.9 57 623-689 165-223 (232)
18 3f9x_A Histone-lysine N-methyl 98.8 2.4E-09 8.1E-14 104.1 3.7 56 624-679 108-165 (166)
19 3h6l_A Histone-lysine N-methyl 98.8 3.6E-09 1.2E-13 110.9 4.9 57 624-690 191-249 (278)
20 2f69_A Histone-lysine N-methyl 98.7 6.3E-09 2.2E-13 108.2 4.0 47 623-669 186-235 (261)
21 3hna_A Histone-lysine N-methyl 98.7 2.2E-09 7.4E-14 113.3 0.4 57 624-688 217-279 (287)
22 2odd_A Protein CBFA2T1; MYND z 98.7 3.4E-09 1.2E-13 86.0 0.8 44 314-357 17-60 (64)
23 2jw6_A Deformed epidermal auto 98.7 4.9E-09 1.7E-13 81.4 1.6 49 307-355 2-50 (52)
24 1n3j_A A612L, histone H3 lysin 98.6 8.3E-09 2.8E-13 94.6 2.7 57 553-609 58-114 (119)
25 1mvh_A Cryptic LOCI regulator 98.6 2.7E-08 9.2E-13 105.6 5.8 47 623-669 213-265 (299)
26 2d8q_A BLU protein, zinc finge 98.6 1.2E-08 4E-13 84.0 1.5 45 314-358 15-59 (70)
27 1ml9_A Histone H3 methyltransf 98.6 3.7E-08 1.3E-12 104.9 5.8 66 623-688 220-292 (302)
28 3rq4_A Histone-lysine N-methyl 98.6 2.2E-08 7.7E-13 102.6 3.9 67 539-607 156-223 (247)
29 1h3i_A Histone H3 lysine 4 spe 98.5 2.9E-08 9.8E-13 105.5 2.9 45 624-668 241-288 (293)
30 2od1_A Protein CBFA2T1; zinc f 98.5 2.7E-08 9.2E-13 79.5 1.2 45 312-356 11-55 (60)
31 1dtj_A RNA-binding neurooncolo 98.5 1.6E-07 5.4E-12 78.8 5.8 53 134-186 12-74 (76)
32 2dj8_A Protein CBFA2T1; zinc f 98.5 3.3E-08 1.1E-12 79.0 1.4 45 313-357 14-58 (60)
33 1ec6_A RNA-binding protein NOV 98.4 2.3E-07 7.8E-12 80.0 5.0 53 134-186 12-74 (87)
34 2r3a_A Histone-lysine N-methyl 98.4 2.4E-07 8.2E-12 98.2 6.2 66 623-688 215-290 (300)
35 2p2r_A Poly(RC)-binding protei 98.4 2.6E-07 8.8E-12 77.5 5.0 53 134-186 14-73 (76)
36 2opv_A KHSRP protein; KH domai 98.4 3E-07 1E-11 78.9 5.4 53 134-186 23-84 (85)
37 1x4n_A FAR upstream element bi 98.4 3.1E-07 1.1E-11 80.0 5.6 54 134-187 24-84 (92)
38 3bo5_A Histone-lysine N-methyl 98.4 3.4E-07 1.2E-11 96.7 6.2 66 623-688 205-276 (290)
39 1zzk_A Heterogeneous nuclear r 98.3 5.1E-07 1.7E-11 76.9 6.0 53 134-186 16-75 (82)
40 2hh2_A KH-type splicing regula 98.3 6.2E-07 2.1E-11 80.4 6.8 56 134-189 16-81 (107)
41 3s8p_A Histone-lysine N-methyl 98.3 2.2E-07 7.5E-12 96.3 3.8 50 557-607 203-252 (273)
42 2ctm_A Vigilin; K homology typ 98.3 5.9E-07 2E-11 78.6 5.4 53 134-186 26-84 (95)
43 1j5k_A Heterogeneous nuclear r 98.3 5E-07 1.7E-11 78.2 4.7 53 134-186 23-82 (89)
44 1we8_A Tudor and KH domain con 98.3 5.4E-07 1.8E-11 80.3 5.0 53 134-186 24-85 (104)
45 1x4m_A FAR upstream element bi 98.3 1E-06 3.6E-11 77.0 6.5 56 134-189 24-88 (94)
46 1wvn_A Poly(RC)-binding protei 98.3 7.9E-07 2.7E-11 75.7 5.4 55 134-188 15-76 (82)
47 2ctk_A Vigilin; K homology typ 98.3 8.2E-07 2.8E-11 79.1 5.4 53 134-186 26-83 (104)
48 3smt_A Histone-lysine N-methyl 98.2 7.3E-07 2.5E-11 101.3 6.1 63 619-688 268-330 (497)
49 3qxy_A N-lysine methyltransfer 98.2 3.6E-07 1.2E-11 102.7 3.2 64 616-687 215-278 (449)
50 1vig_A Vigilin; RNA-binding pr 98.2 1.1E-06 3.9E-11 72.5 5.4 52 134-185 14-70 (71)
51 2axy_A Poly(RC)-binding protei 98.2 1E-06 3.4E-11 73.3 4.9 53 134-186 14-71 (73)
52 2hh3_A KH-type splicing regula 98.2 1.4E-06 4.8E-11 77.8 5.4 55 134-188 20-81 (106)
53 2dgr_A Ring finger and KH doma 98.1 2.2E-06 7.5E-11 73.0 5.6 52 134-185 19-74 (83)
54 2ctl_A Vigilin; K homology typ 98.1 2.9E-06 9.8E-11 74.6 5.6 53 134-186 26-86 (97)
55 2qpw_A PR domain zinc finger p 98.1 2E-06 6.7E-11 81.7 4.9 45 624-670 100-147 (149)
56 3n89_A Defective in GERM LINE 98.1 1.7E-05 5.9E-10 85.6 11.7 156 25-185 25-259 (376)
57 2cte_A Vigilin; K homology typ 98.1 2.3E-06 7.9E-11 74.8 4.1 53 134-186 26-83 (94)
58 2opv_A KHSRP protein; KH domai 98.0 1.6E-05 5.4E-10 68.1 9.0 63 30-98 14-84 (85)
59 1dtj_A RNA-binding neurooncolo 98.0 9.1E-06 3.1E-10 67.9 7.0 63 30-97 3-73 (76)
60 2yqr_A KIAA0907 protein; struc 98.0 6.4E-06 2.2E-10 74.8 5.2 53 134-186 28-98 (119)
61 2cte_A Vigilin; K homology typ 97.9 1.1E-05 3.8E-10 70.4 5.8 63 30-97 17-82 (94)
62 1k1g_A SF1-BO isoform; splicin 97.9 8.9E-06 3E-10 75.3 5.4 54 134-187 22-99 (131)
63 1wvn_A Poly(RC)-binding protei 97.9 2E-05 6.8E-10 66.9 6.8 65 29-98 5-74 (82)
64 1we8_A Tudor and KH domain con 97.9 1.9E-05 6.6E-10 70.2 7.0 64 30-98 15-85 (104)
65 2p2r_A Poly(RC)-binding protei 97.9 1.6E-05 5.5E-10 66.5 5.5 64 30-98 5-73 (76)
66 3qww_A SET and MYND domain-con 97.8 2.3E-06 7.7E-11 95.8 -0.4 63 556-620 198-260 (433)
67 1x4n_A FAR upstream element bi 97.8 2.8E-05 9.6E-10 67.5 6.5 65 29-98 14-83 (92)
68 2cpq_A FragIle X mental retard 97.8 9.6E-06 3.3E-10 69.8 3.3 64 30-97 15-79 (91)
69 2dgr_A Ring finger and KH doma 97.8 2.5E-05 8.5E-10 66.4 5.6 64 29-97 9-74 (83)
70 1zzk_A Heterogeneous nuclear r 97.8 4.7E-05 1.6E-09 64.6 7.2 64 30-98 7-75 (82)
71 1ec6_A RNA-binding protein NOV 97.8 2.6E-05 8.7E-10 67.0 5.3 64 30-98 3-74 (87)
72 2odd_A Protein CBFA2T1; MYND z 97.8 1.8E-06 6.1E-11 69.8 -2.0 56 372-447 2-60 (64)
73 3qwp_A SET and MYND domain-con 97.7 2.7E-06 9.4E-11 95.0 -1.5 63 556-620 198-260 (429)
74 1x4m_A FAR upstream element bi 97.7 2.8E-05 9.7E-10 67.8 5.2 64 30-98 15-85 (94)
75 1j5k_A Heterogeneous nuclear r 97.7 2.7E-05 9.1E-10 67.2 4.9 64 30-98 14-82 (89)
76 2w5y_A Histone-lysine N-methyl 97.7 1E-05 3.6E-10 80.0 2.3 49 559-607 124-174 (192)
77 3f9x_A Histone-lysine N-methyl 97.7 7.3E-06 2.5E-10 79.3 1.1 49 559-607 107-157 (166)
78 2hh2_A KH-type splicing regula 97.7 5E-05 1.7E-09 67.9 6.2 64 30-98 7-78 (107)
79 2hh3_A KH-type splicing regula 97.7 6.6E-05 2.2E-09 66.9 6.7 64 30-98 11-79 (106)
80 2h21_A Ribulose-1,5 bisphospha 97.7 1.7E-05 5.9E-10 88.9 3.7 67 617-688 183-258 (440)
81 2bl5_A MGC83862 protein, quaki 97.6 5E-05 1.7E-09 70.7 5.8 55 134-188 17-102 (140)
82 1vig_A Vigilin; RNA-binding pr 97.6 7.5E-05 2.6E-09 61.5 6.3 62 30-96 5-69 (71)
83 3n71_A Histone lysine methyltr 97.6 5.9E-06 2E-10 93.9 -1.8 65 287-359 30-96 (490)
84 2cpq_A FragIle X mental retard 97.6 4E-05 1.4E-09 65.9 3.8 54 134-187 24-81 (91)
85 2ctj_A Vigilin; K homology typ 97.6 9.2E-05 3.2E-09 64.6 6.1 53 134-186 26-84 (95)
86 2axy_A Poly(RC)-binding protei 97.6 8.1E-05 2.8E-09 61.6 5.4 64 30-98 5-71 (73)
87 2ctm_A Vigilin; K homology typ 97.6 0.00022 7.5E-09 62.2 8.4 64 30-98 17-84 (95)
88 3ope_A Probable histone-lysine 97.6 2.4E-05 8.1E-10 79.4 2.6 49 559-607 146-196 (222)
89 2ctk_A Vigilin; K homology typ 97.6 6.9E-05 2.3E-09 66.6 5.2 67 30-101 17-86 (104)
90 2jvz_A KH type-splicing, FAR u 97.5 0.00011 3.6E-09 70.7 6.4 56 134-189 11-75 (164)
91 3ooi_A Histone-lysine N-methyl 97.5 3.3E-05 1.1E-09 78.8 2.7 49 559-607 165-215 (232)
92 2anr_A Neuro-oncological ventr 97.5 9.4E-05 3.2E-09 72.2 5.7 57 134-190 15-81 (178)
93 2jzx_A Poly(RC)-binding protei 97.5 8.4E-05 2.9E-09 71.3 5.1 53 134-186 14-71 (160)
94 1j4w_A FUSE binding protein; s 97.4 9.3E-05 3.2E-09 72.0 5.0 56 134-189 12-74 (174)
95 2ctl_A Vigilin; K homology typ 97.4 0.00024 8.3E-09 62.2 7.1 64 30-98 17-86 (97)
96 3bo5_A Histone-lysine N-methyl 97.4 6.4E-05 2.2E-09 79.2 3.1 49 559-607 205-256 (290)
97 3h6l_A Histone-lysine N-methyl 97.3 6.2E-05 2.1E-09 78.8 1.9 48 559-606 190-239 (278)
98 3krm_A Insulin-like growth fac 97.3 0.00019 6.6E-09 68.9 4.8 54 134-187 12-73 (163)
99 3qxy_A N-lysine methyltransfer 97.3 0.00014 4.7E-09 81.6 4.2 76 525-602 184-263 (449)
100 2f69_A Histone-lysine N-methyl 97.2 9.9E-05 3.4E-09 76.5 2.6 47 559-605 186-235 (261)
101 1ml9_A Histone H3 methyltransf 97.2 0.00011 3.7E-09 78.0 2.1 49 559-607 220-274 (302)
102 1h3i_A Histone H3 lysine 4 spe 97.1 0.00012 4E-09 77.5 1.4 45 559-603 240-287 (293)
103 1mvh_A Cryptic LOCI regulator 97.1 0.00019 6.7E-09 75.9 2.7 48 559-606 213-266 (299)
104 3hna_A Histone-lysine N-methyl 97.1 9.1E-05 3.1E-09 77.9 0.1 49 559-607 216-270 (287)
105 2ctj_A Vigilin; K homology typ 97.0 0.00072 2.5E-08 58.9 5.4 62 30-97 17-83 (95)
106 3u1k_A Polyribonucleotide nucl 97.0 0.00057 2E-08 79.1 5.7 64 29-97 566-629 (630)
107 2ctf_A Vigilin; K homology typ 96.9 0.0011 3.7E-08 58.6 5.4 53 134-186 36-91 (102)
108 3db5_A PR domain zinc finger p 96.9 0.00073 2.5E-08 64.1 4.5 45 623-669 97-144 (151)
109 2r3a_A Histone-lysine N-methyl 96.7 0.00064 2.2E-08 71.9 3.0 46 559-604 215-266 (300)
110 2e3u_A PH-DIM2P, hypothetical 96.7 0.0013 4.6E-08 66.1 4.9 58 134-191 43-107 (219)
111 3ep0_A PR domain zinc finger p 96.6 0.0016 5.3E-08 62.9 4.5 45 623-669 101-148 (170)
112 1k1g_A SF1-BO isoform; splicin 96.5 0.006 2.1E-07 56.2 8.1 66 30-99 7-99 (131)
113 2yqr_A KIAA0907 protein; struc 96.5 0.0062 2.1E-07 55.1 8.0 65 30-98 12-98 (119)
114 2qpw_A PR domain zinc finger p 96.5 0.00097 3.3E-08 63.1 2.4 45 560-606 100-147 (149)
115 2h21_A Ribulose-1,5 bisphospha 96.4 0.0011 3.8E-08 74.1 2.8 75 524-602 158-241 (440)
116 2od1_A Protein CBFA2T1; zinc f 96.4 0.00024 8.1E-09 56.4 -2.0 50 385-446 3-55 (60)
117 2ctf_A Vigilin; K homology typ 96.3 0.011 3.6E-07 52.1 8.1 64 30-98 27-91 (102)
118 3u1k_A Polyribonucleotide nucl 96.2 0.0018 6.2E-08 74.9 3.2 52 134-185 576-629 (630)
119 2dj8_A Protein CBFA2T1; zinc f 96.2 0.00057 2E-08 54.2 -0.7 42 394-447 14-58 (60)
120 2jw6_A Deformed epidermal auto 96.0 0.0014 4.8E-08 50.2 0.5 38 395-444 9-49 (52)
121 3dal_A PR domain zinc finger p 95.9 0.0045 1.5E-07 61.0 3.8 44 623-668 131-177 (196)
122 2d8q_A BLU protein, zinc finge 95.6 0.0014 4.7E-08 53.7 -1.1 42 395-448 15-59 (70)
123 3ihx_A PR domain zinc finger p 95.4 0.0093 3.2E-07 56.4 3.7 43 624-668 97-142 (152)
124 3n89_A Defective in GERM LINE 95.4 0.012 4E-07 63.6 4.8 53 132-184 37-103 (376)
125 2qnd_A FMR1 protein; KH domain 95.3 0.021 7.2E-07 53.5 5.9 62 32-98 69-141 (144)
126 3v69_A Protein filia; RNA-bind 95.3 0.018 6.3E-07 52.5 5.0 52 134-185 65-122 (140)
127 1tua_A Hypothetical protein AP 94.9 0.021 7.2E-07 56.0 4.8 59 134-192 13-78 (191)
128 3ray_A PR domain-containing pr 94.6 0.02 6.8E-07 57.8 3.9 44 623-668 140-186 (237)
129 4aid_A Polyribonucleotide nucl 94.1 0.01 3.5E-07 69.5 0.5 66 134-199 579-646 (726)
130 4aid_A Polyribonucleotide nucl 94.1 0.016 5.4E-07 67.9 2.0 64 30-98 570-633 (726)
131 2bl5_A MGC83862 protein, quaki 93.9 0.12 4.1E-06 47.9 7.2 66 31-100 3-102 (140)
132 3v69_A Protein filia; RNA-bind 93.9 0.33 1.1E-05 44.3 9.8 91 1-97 17-122 (140)
133 2yqq_A Zinc finger HIT domain- 88.5 0.16 5.5E-06 39.2 1.5 37 310-347 8-44 (56)
134 3db5_A PR domain zinc finger p 87.3 0.2 6.8E-06 47.2 1.7 47 559-607 97-146 (151)
135 2cxc_A NUSA; transcription ter 86.6 0.57 2E-05 43.6 4.4 102 30-161 36-139 (144)
136 3ep0_A PR domain zinc finger p 84.8 0.32 1.1E-05 46.7 1.7 47 559-607 101-150 (170)
137 2pt7_G HP1451, hypothetical pr 79.4 1.1 3.6E-05 42.2 3.0 92 86-189 4-105 (152)
138 1e3p_A Guanosine pentaphosphat 75.5 0.2 6.9E-06 59.1 -3.8 63 30-97 598-660 (757)
139 3dal_A PR domain zinc finger p 73.8 0.59 2E-05 45.9 -0.4 46 559-606 131-179 (196)
140 1x4s_A Protein FON, zinc finge 72.5 0.7 2.4E-05 35.9 -0.2 30 315-345 12-45 (59)
141 3cdi_A Polynucleotide phosphor 70.1 0.91 3.1E-05 53.3 0.0 63 30-97 560-622 (723)
142 3cdi_A Polynucleotide phosphor 65.6 1.3 4.4E-05 52.1 0.0 64 134-197 569-634 (723)
143 2yqq_A Zinc finger HIT domain- 63.9 2.2 7.4E-05 32.9 1.0 35 396-444 13-47 (56)
144 3gku_A Probable RNA-binding pr 63.6 2.2 7.4E-05 42.7 1.2 54 136-189 103-166 (225)
145 3ihx_A PR domain zinc finger p 58.3 3.5 0.00012 38.6 1.6 44 559-604 96-142 (152)
146 3ray_A PR domain-containing pr 55.6 2.2 7.4E-05 43.0 -0.4 46 559-606 140-188 (237)
147 1e3p_A Guanosine pentaphosphat 54.3 0.87 3E-05 53.7 -4.1 65 134-198 607-675 (757)
148 3j21_g 50S ribosomal protein L 51.9 6.4 0.00022 29.7 1.8 27 193-226 11-37 (51)
149 1k0r_A NUSA; two component arr 51.5 12 0.00042 39.9 4.6 93 39-162 249-344 (366)
150 1x4s_A Protein FON, zinc finge 51.2 3.2 0.00011 32.3 -0.0 38 396-444 12-49 (59)
151 1dl6_A Transcription factor II 49.1 8.6 0.00029 29.7 2.2 37 191-229 6-42 (58)
152 4e9j_A General secretion pathw 46.8 53 0.0018 32.8 8.4 101 60-185 139-241 (246)
153 1pft_A TFIIB, PFTFIIBN; N-term 39.8 9.5 0.00032 28.3 1.1 32 196-229 5-36 (50)
154 3j21_S 50S ribosomal protein L 37.0 27 0.00091 32.7 3.9 25 85-110 28-52 (155)
155 2asb_A Transcription elongatio 36.8 32 0.0011 34.7 4.7 93 39-161 126-220 (251)
156 3k3s_A Altronate hydrolase; st 34.4 26 0.00088 30.5 3.1 19 644-662 80-98 (105)
157 4a17_Q RPL17, 60S ribosomal pr 33.3 30 0.001 33.2 3.7 26 84-110 26-51 (183)
158 1vq8_R 50S ribosomal protein L 29.7 44 0.0015 31.2 4.1 26 84-110 24-49 (155)
159 3smt_A Histone-lysine N-methyl 29.3 14 0.00049 41.3 0.8 92 524-622 237-328 (497)
160 3ezj_A General secretion pathw 29.2 1.4E+02 0.0049 29.4 8.2 101 61-184 136-238 (241)
161 3laz_A D-galactarate dehydrata 27.8 34 0.0011 29.5 2.7 19 644-662 73-91 (99)
162 1vq8_Z 50S ribosomal protein L 27.7 12 0.00042 31.2 -0.1 31 196-229 27-57 (83)
163 4e9j_A General secretion pathw 25.8 90 0.0031 31.1 6.0 121 49-188 32-174 (246)
164 3u50_C Telomerase-associated p 24.6 73 0.0025 30.2 4.7 30 193-226 39-68 (172)
165 2jmk_A Hypothetical protein TA 23.7 63 0.0022 27.1 3.5 38 233-270 25-62 (111)
166 3iz5_V 60S ribosomal protein L 22.2 63 0.0021 30.6 3.7 25 85-110 25-49 (171)
167 2yrc_A Protein transport prote 22.1 18 0.00062 28.0 -0.1 36 191-226 4-42 (59)
168 1l1o_C Replication protein A 7 22.0 49 0.0017 31.6 3.0 28 196-227 43-72 (181)
169 3oss_D Type 2 secretion system 20.9 86 0.0029 29.9 4.4 29 156-184 148-178 (181)
170 2k1p_A Zinc finger RAN-binding 20.8 36 0.0012 23.0 1.2 12 215-226 4-15 (33)
171 3jyw_9 60S ribosomal protein L 20.7 48 0.0016 26.8 2.1 30 196-228 26-55 (72)
No 1
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=100.00 E-value=4.3e-44 Score=353.06 Aligned_cols=168 Identities=27% Similarity=0.374 Sum_probs=163.0
Q ss_pred EEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhhHHhhccc
Q psy8224 32 RKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALALLRL 111 (766)
Q Consensus 32 ~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~a~~ll~~ 111 (766)
.+|+||++|+|+|||+||+++++|++++|++|+||+++|.|+|+|+++|+||++++||+|||+||+|||+|++|++||+
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~- 84 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLE- 84 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGS-
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhccc-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeCceEEEEcchhhHHHHHHHHHHhhcCCCCc
Q psy8224 112 DNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIADSKIHVLGSYQNVQVALKALSNLILGSPPN 191 (766)
Q Consensus 112 d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~~~v~iiG~~~~l~~ar~~i~~~~~~~~p~ 191 (766)
||+++|+|+|.+++.++++|++|++|||||++|+|+++||++|||+|+|+|+||+|+|+|+++++||++|++|+.|++|+
T Consensus 85 Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~~v~i~G~~~~i~~Ar~~i~~li~g~~h~ 164 (191)
T 1tua_A 85 EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHS 164 (191)
T ss_dssp TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHH
T ss_pred CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCCEEEEEeChHHHHHHHHHHHHHHcCCCch
Confidence 88999999999996677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeec
Q psy8224 192 KVYGGILCS 200 (766)
Q Consensus 192 ~~~s~l~c~ 200 (766)
++|+.++..
T Consensus 165 ~vy~~~~~~ 173 (191)
T 1tua_A 165 TVYRHLERI 173 (191)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999988764
No 2
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=100.00 E-value=6.9e-39 Score=324.05 Aligned_cols=185 Identities=24% Similarity=0.330 Sum_probs=160.9
Q ss_pred CCCCCCcccc-CCCCceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHH
Q psy8224 16 AKAQEPAVKK-AKHVDMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVK 94 (766)
Q Consensus 16 ~~~~~~~~~~-~~~~~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ 94 (766)
.+|.++.... +..+.+..+.||++|+++|||+||++++.|++++|++|+||+++|.|+|++++.|+||.+++||+++|+
T Consensus 19 ~~~~~pr~e~s~~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~ 98 (219)
T 2e3u_A 19 GEIVEDEDEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVL 98 (219)
T ss_dssp --------------CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHH
T ss_pred CCCCCCccccCCCCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 4455543322 222478899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhhHHhhcccccceeeeeeeccc-cccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeCceEEEEcchhh
Q psy8224 95 AFVYGFDVDDALALLRLDNLFIESFEIKDV-KTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIADSKIHVLGSYQN 173 (766)
Q Consensus 95 ai~~gf~~~~a~~ll~~d~~~~~~~~i~~~-~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~~~v~iiG~~~~ 173 (766)
+|++||+||+|..||+ ||+++++|+|.++ +.++++|++|++|||||++|+|+++||++|||+|+|+|++|+|+|++++
T Consensus 99 ~i~rg~~~e~g~~ll~-dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~~v~i~G~~~~ 177 (219)
T 2e3u_A 99 AIGRGFSPERAFRLLN-EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQ 177 (219)
T ss_dssp HHHTTCCHHHHGGGGS-TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETTEEEEEECHHH
T ss_pred HHhccCCccccceecc-CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCeEEEEEeCHHH
Confidence 9999999999999997 8899999999998 7888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcccccceeecc
Q psy8224 174 VQVALKALSNLILGSPPNKVYGGILCSR 201 (766)
Q Consensus 174 l~~ar~~i~~~~~~~~p~~~~s~l~c~~ 201 (766)
++.||++|+++++|++|++||+.|+...
T Consensus 178 i~~A~~~i~~li~g~~~~~vy~~l~~~~ 205 (219)
T 2e3u_A 178 IEIAKTAIEKLARGSPHGSVYRYLERRK 205 (219)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999998753
No 3
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=100.00 E-value=8.3e-39 Score=364.64 Aligned_cols=269 Identities=20% Similarity=0.396 Sum_probs=203.7
Q ss_pred cccccccccccccccccccccCCceEeeecccccccC-CCCCCCcccccCCCCCCCcccCCCCCcccCCCCCc-cccCcc
Q psy8224 355 KYKVVRNDILGRHMVATKDIREGEIILEEKPLVVGPK-TASVPLCLGCHRTLKPTSMEENEPLSFYKCSDCGW-PLCAPR 432 (766)
Q Consensus 355 ~l~v~~s~~~GR~lvA~r~~~~ge~Il~e~P~~~~p~-~~~~~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~-~yCS~~ 432 (766)
.+++..++.+||+++|+++|++|++|+.+.|+++++. ......|.+|++... .+.+|++|++ +|||++
T Consensus 8 ~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~----------~~~~C~~C~~~~yCs~~ 77 (490)
T 3n71_A 8 NVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQE----------KLHRCGQCKFAHYCDRT 77 (490)
T ss_dssp TEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCS----------CCEECTTTSCCEESSHH
T ss_pred ceEEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCCCC----------CCCCCCCCCCcCcCCHH
Confidence 4667788999999999999999999999999987654 446799999998542 3789999999 799999
Q ss_pred CC--CCCCcHhhhhhhhhccccccccccccccccccccccccCchhhhhhccCh--------hhHHHHHhhhhhhhcccc
Q psy8224 433 CK--SLPSHQKECKLMKDNQYKSTIQFENETKKESAYCCIAPLRSPLRCLLLER--------PLLDELLTLDAHLNERIN 502 (766)
Q Consensus 433 C~--~~~~H~~EC~~l~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~lR~L~l~~--------~~~~~l~~L~sh~~~~~~ 502 (766)
|+ +|.+|+.||+++..+... |.+ .+|+++|+|+... +.|..+..|++|.+++.+
T Consensus 78 Cq~~~w~~Hk~eC~~~~~~~~~------p~~----------~~rl~lRiL~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~ 141 (490)
T 3n71_A 78 CQKDAWLNHKNECAAIKKYGKV------PNE----------NIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGE 141 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC------CCH----------HHHHHHHHHHHHHHTTSSBCTTCSSBGGGSCCCGGGCCH
T ss_pred HhhhhhhHHHHHhHHHHhcCcC------CCH----------HHHHHHHHHHHhhccCccCcchhhhHHHHHHhhhhhcCc
Confidence 98 488999999999987521 211 1345578776421 345678899999998876
Q ss_pred hhhHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHhhhccccccccccC-CceeEEEeecccccccccccCCceeeeecCc
Q psy8224 503 TKLYEIYRVNLVRFIKDVLH--MDVSEETILRIAGILDTNAFDIRRSV-GKIKIRGIYMKTAMLSHNCKPNTKHVIVNED 579 (766)
Q Consensus 503 ~~~~~~~~~~~~~~L~~~~~--l~~s~~~i~~i~~~l~~Naf~i~~~~-~~~~~~gLyp~~SllNHSC~PN~~~~f~~~~ 579 (766)
+. +..+...+..|+..+.. ..++.+++..+++++.+|+|++.+.. ....|.||||.+|++||||.||+...| +++
T Consensus 142 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~N~f~i~~~~g~~~~g~gl~p~~s~~NHSC~PN~~~~~-~~~ 219 (490)
T 3n71_A 142 EE-QKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIF-NNG 219 (490)
T ss_dssp HH-HHHHHHHHHHHHHHSCTTSCCCCHHHHHHHHHHHHTTEEEEECTTSCSEEEEEECTTGGGCEECSSCSEEEEE-ECC
T ss_pred hH-HHHHHHHHHHHHHHccccccCCCHHHHHHHHHHHhccCcccccCCCCccceEEEchhhhhcccCCCCCeeEEe-cCC
Confidence 43 44445556666654221 25788999999999999999997654 245667777777777777777776666 321
Q ss_pred cchhhhhhhcccCCCeeeecccCCCCCccccccccccchhhhhhhcccCCCCCCCeEEEEEeCCeEEEEEEecccCCCCe
Q psy8224 580 FSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDI 659 (766)
Q Consensus 580 ~~l~~~A~r~I~~GeeI~~sY~~~~~~~~~r~~~~~i~~glyp~~s~~NHsC~PN~~~~~~~~g~~l~vra~r~I~~Gee 659 (766)
+ |+-. + ..| .....+.|+|+|||++|||
T Consensus 220 ~------------------------------------------------~~~~-~--~~~-~~~~~~~v~A~rdI~~GEE 247 (490)
T 3n71_A 220 N------------------------------------------------HEAV-K--SMF-HTQMRIELRALGKISEGEE 247 (490)
T ss_dssp C------------------------------------------------CSSS-C--CCG-GGSCEEEEEESSCBCTTCB
T ss_pred c------------------------------------------------cccc-c--ccc-cccceEEEEECCCCCCCCE
Confidence 0 0000 0 000 0124899999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHhCCCCcEEeccCCCCCCcccccccc
Q psy8224 660 ISTTYTQPFWGTMDRRLHLRMSKCFDCTCDRCKDPTELETYLGK 703 (766)
Q Consensus 660 I~isY~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~e~~~~~~~ 703 (766)
|||||++..+++.+||+.|+++|+|+|.|++|.++++.+.+++.
T Consensus 248 ltisY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~ 291 (490)
T 3n71_A 248 LTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAA 291 (490)
T ss_dssp CEECSSCSCSCHHHHHHHHHHHHSSCCCCHHHHHTTTHHHHTCB
T ss_pred EEEeecCCCCCHHHHHHHHHCCCCeEeeCCCCCCCCcccchhhc
Confidence 99999999999999999999999999999999999887765554
No 4
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=100.00 E-value=8e-39 Score=359.38 Aligned_cols=253 Identities=21% Similarity=0.322 Sum_probs=189.9
Q ss_pred cccccccccccccccccccccCCceEeeecccccccCC-CCCCCcccccCCCCCCCcccCCCCCcccCCCCCc-cccCcc
Q psy8224 355 KYKVVRNDILGRHMVATKDIREGEIILEEKPLVVGPKT-ASVPLCLGCHRTLKPTSMEENEPLSFYKCSDCGW-PLCAPR 432 (766)
Q Consensus 355 ~l~v~~s~~~GR~lvA~r~~~~ge~Il~e~P~~~~p~~-~~~~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~-~yCS~~ 432 (766)
.+++..++.+||+++|+++|++|++|+.+.|++.++.. .....|.+|++... .+.+|++|++ +|||++
T Consensus 8 ~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~----------~~~~C~~C~~~~yCs~~ 77 (433)
T 3qww_A 8 GLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKE----------GLSKCGRCKQAFYCDVE 77 (433)
T ss_dssp TEEEEECTTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCS----------SCEECTTTSCCEESSHH
T ss_pred cEEEeecCCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCC----------CCCCCCCCcceeecChh
Confidence 45667789999999999999999999999999988854 46799999998643 3789999999 999999
Q ss_pred CC--CCCCcHhhhhhhhhccccccccccccccccccccccccCchhhhhhccC--------hhhHHHHHhhhhhhhcccc
Q psy8224 433 CK--SLPSHQKECKLMKDNQYKSTIQFENETKKESAYCCIAPLRSPLRCLLLE--------RPLLDELLTLDAHLNERIN 502 (766)
Q Consensus 433 C~--~~~~H~~EC~~l~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~lR~L~l~--------~~~~~~l~~L~sh~~~~~~ 502 (766)
|+ +|.+|+.||..+..+... ..|.+ .+|+++|+|+.. .+.+..+..|++|.+++..
T Consensus 78 Cq~~~w~~Hk~eC~~l~~~~~~----~~p~~----------~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~ 143 (433)
T 3qww_A 78 CQKEDWPLHKLECSSMVVLGEN----WNPSE----------TVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDN 143 (433)
T ss_dssp HHHHHHHHHTTTHHHHHHSSTT----CCCCH----------HHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGCCH
T ss_pred hhhhhhhHHHHHHHHHHHhCcc----CCCcH----------HHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhccCh
Confidence 98 489999999999987532 11211 134457776542 1234457789999988765
Q ss_pred hh--hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhccccccccccCCceeEEEeecccccccccccCCceeeeecCcc
Q psy8224 503 TK--LYEIYRVNLVRFIKDVLHMDVSEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDF 580 (766)
Q Consensus 503 ~~--~~~~~~~~~~~~L~~~~~l~~s~~~i~~i~~~l~~Naf~i~~~~~~~~~~gLyp~~SllNHSC~PN~~~~f~~~~~ 580 (766)
+. .+......+..|+...+. ..+.+++..+++++++|+|++........
T Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~N~f~i~~~~~~~~---------------------------- 194 (433)
T 3qww_A 144 EKKDLIQSDIAALHQFYSKYLE-FPDHSSLVVLFAQVNCNGFTIEDEELSHL---------------------------- 194 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC-CCCHHHHHHHHHHHHHHCEEEECTTCCEE----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccC-CCCHHHHHHHHHHHcCCceecccCCccce----------------------------
Confidence 32 122221222222222111 34788999999999999999865433333
Q ss_pred chhhhhhhcccCCCeeeecccCCCCCccccccccccchhhhhhhcccCCCCCCCeEEEEEeCCeEEEEEEecccCCCCeE
Q psy8224 581 SLQLIALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDII 660 (766)
Q Consensus 581 ~l~~~A~r~I~~GeeI~~sY~~~~~~~~~r~~~~~i~~glyp~~s~~NHsC~PN~~~~~~~~g~~l~vra~r~I~~GeeI 660 (766)
|.|+||.+|+|||||+||+.+.| +|..+.++|+|||++||||
T Consensus 195 ------------------------------------g~gl~p~~s~~NHsC~PN~~~~~--~~~~~~~~a~r~I~~Geel 236 (433)
T 3qww_A 195 ------------------------------------GSAIFPDVALMNHSCCPNVIVTY--KGTLAEVRAVQEIHPGDEV 236 (433)
T ss_dssp ------------------------------------EEEECTTGGGSEECSSCSEEEEE--ETTEEEEEESSCBCTTCEE
T ss_pred ------------------------------------eEEecccccccCCCCCCCceEEE--cCCEEEEEeccCcCCCCEE
Confidence 45555555566666666666555 3678999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHhCCCCcEEeccCCCCCCccc
Q psy8224 661 STTYTQPFWGTMDRRLHLRMSKCFDCTCDRCKDPTELE 698 (766)
Q Consensus 661 ~isY~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~e~~ 698 (766)
||||++..+++.+||+.|+++|+|+|.|++|.++++..
T Consensus 237 ~i~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~d~ 274 (433)
T 3qww_A 237 FTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKDKDK 274 (433)
T ss_dssp EECCSCTTSCHHHHHHHHHHHHSCCCCSHHHHHCTTHH
T ss_pred EEeecCCcCCHHHHHHHHhCcCCEEeECCCCCCCCcch
Confidence 99999999999999999999999999999999998755
No 5
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=100.00 E-value=4.4e-38 Score=353.68 Aligned_cols=257 Identities=21% Similarity=0.400 Sum_probs=191.2
Q ss_pred ccccccccccccccccccccCCceEeeecccccccCC-CCCCCcccccCCCCCCCcccCCCCCcccCCCCCc-cccCccC
Q psy8224 356 YKVVRNDILGRHMVATKDIREGEIILEEKPLVVGPKT-ASVPLCLGCHRTLKPTSMEENEPLSFYKCSDCGW-PLCAPRC 433 (766)
Q Consensus 356 l~v~~s~~~GR~lvA~r~~~~ge~Il~e~P~~~~p~~-~~~~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~-~yCS~~C 433 (766)
++...++.+||+++|+++|++|++|+.+.|++.++.. .....|.+|++... .+.+|++|++ +|||++|
T Consensus 7 i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~----------~~~~C~~C~~~~yCs~~C 76 (429)
T 3qwp_A 7 VEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKE----------KLMRCSQCRVAKYCSAKC 76 (429)
T ss_dssp EEEEECSSSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCS----------SCEECTTTSCCEESSHHH
T ss_pred eeecccCCCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCC----------CCCcCCCCCCcccCChhh
Confidence 3444578999999999999999999999999999875 46799999998643 2789999999 9999999
Q ss_pred C--CCCCcHhhhhhhhhccccccccccccccccccccccccCchhhhhhcc----C---hhhHHHHHhhhhhhhcccchh
Q psy8224 434 K--SLPSHQKECKLMKDNQYKSTIQFENETKKESAYCCIAPLRSPLRCLLL----E---RPLLDELLTLDAHLNERINTK 504 (766)
Q Consensus 434 ~--~~~~H~~EC~~l~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~lR~L~l----~---~~~~~~l~~L~sh~~~~~~~~ 504 (766)
+ +|.+|+.||+.+..+... . |.+. +|+++|+++. . .+.|..+.+|++|.+++....
T Consensus 77 q~~~w~~Hk~eC~~~~~~~~~----~-~~~~----------~rl~~rill~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~ 141 (429)
T 3qwp_A 77 QKKAWPDHKRECKCLKSCKPR----Y-PPDS----------VRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDR 141 (429)
T ss_dssp HHHTHHHHHHHHHHHHHTTTC----C-CCHH----------HHHHHHHHHHHHHSCCCGGGSSSCGGGCCCCGGGCCHHH
T ss_pred hhhhhhhhHHhhhhHHhcCcc----C-CChH----------HHHHHHHHHHHhcCCCCchhhhhhHHHHhhChhhcChhH
Confidence 8 588999999999988642 1 2111 2333454442 1 145667889999998875432
Q ss_pred --hHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHhhhccccccccccCCceeEEEeecccccccccccCCceeeeecCc
Q psy8224 505 --LYEIYRVNLVRFIKDVLH---MDVSEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNED 579 (766)
Q Consensus 505 --~~~~~~~~~~~~L~~~~~---l~~s~~~i~~i~~~l~~Naf~i~~~~~~~~~~gLyp~~SllNHSC~PN~~~~f~~~~ 579 (766)
.|......+..|+...+. ...+.+++.++++++.+|+|++........
T Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~N~f~i~~~~~~~~--------------------------- 194 (429)
T 3qwp_A 142 KEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEV--------------------------- 194 (429)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGSCTTCCHHHHHHHHHHHCEEEECTTSCEE---------------------------
T ss_pred HHHHHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHHHhcCccccccccccc---------------------------
Confidence 233333333444432211 023456789999999999998865433333
Q ss_pred cchhhhhhhcccCCCeeeecccCCCCCccccccccccchhhhhhhcccCCCCCCCeEEEEEeCCeEEEEEEecccCCCCe
Q psy8224 580 FSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDI 659 (766)
Q Consensus 580 ~~l~~~A~r~I~~GeeI~~sY~~~~~~~~~r~~~~~i~~glyp~~s~~NHsC~PN~~~~~~~~g~~l~vra~r~I~~Gee 659 (766)
|.|+||.+|+|||||.||+.+.| +|..++++|+|||++|||
T Consensus 195 -------------------------------------g~~l~~~~s~~NHsC~PN~~~~~--~~~~~~~~a~r~I~~GeE 235 (429)
T 3qwp_A 195 -------------------------------------GVGLYPSISLLNHSCDPNCSIVF--NGPHLLLRAVRDIEVGEE 235 (429)
T ss_dssp -------------------------------------EEEECTTGGGCEECSSCSEEEEE--ETTEEEEEECSCBCTTCE
T ss_pred -------------------------------------eEEEchhhHhhCcCCCCCeEEEE--eCCEEEEEEeeeECCCCE
Confidence 45555556666666666666665 367899999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHhCCCCcEEeccCCCCCCcccccccc
Q psy8224 660 ISTTYTQPFWGTMDRRLHLRMSKCFDCTCDRCKDPTELETYLGK 703 (766)
Q Consensus 660 I~isY~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~e~~~~~~~ 703 (766)
|||||++..+++.+||+.|+++|+|+|.|++|.++++.+.++++
T Consensus 236 l~isY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~ 279 (429)
T 3qwp_A 236 LTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTG 279 (429)
T ss_dssp EEECCSCSSCCHHHHHHHHHHHHCCCCCSHHHHHTTTHHHHTCS
T ss_pred EEEEecCCCCCHHHHHHHHhccCCeEeeCCCCCCCccccccccc
Confidence 99999999999999999999999999999999999876655543
No 6
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=134.39 Aligned_cols=140 Identities=17% Similarity=0.243 Sum_probs=110.6
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc-------cCeEEEEeCCCCCCHHHHHHHHHHHHHHHc----
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK-------SRNVEIRLSPETEDISNLQKAADFVKAFVY---- 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~-------~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~---- 98 (766)
.+.++.||++.++.|||+.|++++.|++.+|++|.++.. ++.|.|.+ ++..+.+|+++|..+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-----DPYKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-----CHHHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHHhccC
Confidence 367899999999999999999999999999999999643 34788876 78999999999999977
Q ss_pred -CCChhhHHhhcccccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeC-------ceEEEEcc
Q psy8224 99 -GFDVDDALALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIAD-------SKIHVLGS 170 (766)
Q Consensus 99 -gf~~~~a~~ll~~d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~-------~~v~iiG~ 170 (766)
||++.+.... + .... . .+ ......+|+|||++|++++.|+..|||+|.|.+ ++|.|.|+
T Consensus 77 ~~~~~~~~~~~-~-~~~~-~-----~i-----~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~ 143 (164)
T 2jvz_A 77 GGFGDRNEYGS-R-IGGG-I-----DV-----PVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP 143 (164)
T ss_dssp CCCSSCSSCTT-S-CSSS-B-----CC-----EEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC
T ss_pred CCCCCccccCC-C-CCce-E-----EE-----EEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC
Confidence 3433211100 0 0000 0 01 011256999999999999999999999999984 68999999
Q ss_pred hhhHHHHHHHHHHhhcC
Q psy8224 171 YQNVQVALKALSNLILG 187 (766)
Q Consensus 171 ~~~l~~ar~~i~~~~~~ 187 (766)
.++++.|+..|..+++.
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998854
No 7
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.5e-15 Score=151.69 Aligned_cols=104 Identities=21% Similarity=0.351 Sum_probs=75.1
Q ss_pred hhhhhcccCCCeeeecccCCC-CCc-cc------------cccccccchhhhhh-hcccCCCCCCCeEEEEEeCCeEEEE
Q psy8224 584 LIALVNICKGDIISTTYTQPF-WGT-MD------------RRLHLRMSKWIYMK-TAMLSHNCKPNTKHVIVNEDFSLQL 648 (766)
Q Consensus 584 ~~A~r~I~~GeeI~~sY~~~~-~~~-~~------------r~~~~~i~~glyp~-~s~~NHsC~PN~~~~~~~~g~~l~v 648 (766)
|+|.++|++||.|..--|... .+. .+ .........++|+. ++++||||+||+...+. .+.++.+
T Consensus 122 v~A~~~I~kGE~I~ey~Geli~~t~~e~~~~~~~~n~f~i~~~~~~~~~~l~~~~ar~iNHSC~PN~~~~~~-~~~~i~v 200 (247)
T 3rq4_A 122 IVSTRAWKKNEKLELLVGCIAELREADEGLLRAGENDFSIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPA-DGNAACV 200 (247)
T ss_dssp EEESSCBCTTCEEEEEEEEEEECCGGGGGGCCTTTSCTTEEEETTTTEEEEEESGGGGCEECSSCSEEEEEE-TTTEEEE
T ss_pred EEeCCccCCCCEEEEEEeEEEeCcHHHHHhhhccCCcEEEEecCCcccceeecchhhhcCCCCCCCEEEEEe-CCCEEEE
Confidence 567788889988855222111 000 00 00112245677776 88999999999977764 4679999
Q ss_pred EEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEeccCCCCCCccc
Q psy8224 649 IALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTCDRCKDPTELE 698 (766)
Q Consensus 649 ra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~e~~ 698 (766)
+|+|||++|||||++|++.+|+ .+.|.|.|.+|..+.+.+
T Consensus 201 ~A~rdI~~GEElt~~Y~~~~~~----------~~~f~C~C~~C~~~~~g~ 240 (247)
T 3rq4_A 201 KVLRDIEPGDEVTCFYGEGFFG----------EKNEHCECHTCERKGEGA 240 (247)
T ss_dssp EESSCBCTTCBCEECCCTTSSS----------GGGTTCCCHHHHHHTCGG
T ss_pred EECCcCCCCCEEEEecCchhcC----------CCCCEEECCCCCCCCCCc
Confidence 9999999999999999999774 368999999998876543
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.42 E-value=6.5e-13 Score=130.96 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=113.7
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc--------cCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK--------SRNVEIRLSPETEDISNLQKAADFVKAFVYGFD 101 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~--------~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~ 101 (766)
.+..+.||.+.+|.|||+.|++++.|++.+|++|+|+.. ++.|+|.+ ++..+.+|+++|..+.+.++
T Consensus 6 ~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 6 YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG-----TIEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEE-----CHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEe-----CHHHHHHHHHHHHHHHhccC
Confidence 578999999999999999999999999999999999743 34678887 57899999999999988775
Q ss_pred hhhHH----hhcc------cccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeCc--------
Q psy8224 102 VDDAL----ALLR------LDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIADS-------- 163 (766)
Q Consensus 102 ~~~a~----~ll~------~d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~~-------- 163 (766)
...+. .++. .+......+.| -...+|+|||++|++++.|++.||++|.|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V----------p~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~ 150 (178)
T 2anr_A 81 QNVAKTEPVSILQPQTTVNPDRANQVKIIV----------PNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQN 150 (178)
T ss_dssp CC-----------------CGGGGEEEEEE----------EHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCE
T ss_pred CccccCCcccccCCccCCCCCCceEEEEEE----------chhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCc
Confidence 43221 0110 00001111111 12458999999999999999999999999754
Q ss_pred -eEEEEcchhhHHHHHHHHHHhhcCCCC
Q psy8224 164 -KIHVLGSYQNVQVALKALSNLILGSPP 190 (766)
Q Consensus 164 -~v~iiG~~~~l~~ar~~i~~~~~~~~p 190 (766)
+|.|.|+.++++.|+..|..+++..+|
T Consensus 151 ~~v~I~G~~~~v~~A~~~I~~~i~e~p~ 178 (178)
T 2anr_A 151 RVVTVSGEPEQNRKAVELIIQKIQEDPQ 178 (178)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCC
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHhCCC
Confidence 799999999999999999999876554
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.41 E-value=7.4e-13 Score=130.06 Aligned_cols=140 Identities=19% Similarity=0.266 Sum_probs=107.9
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEccc-----CeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhh
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKS-----RNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDD 104 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~-----~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~ 104 (766)
.+..+.||++.++.|||+.|++++.|++.++++|+|+... +.|.|.+ ++..+.+|+++|..+.+.+....
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~~~~~~~~~ 77 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG-----PPDRAQHAAEIITDLLRSVQAGN 77 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHHC---
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHHhcccCC
Confidence 5788999999999999999999999999999999998543 5788877 68999999999998876542110
Q ss_pred ---------HHhhcccccc--------eeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeC-----
Q psy8224 105 ---------ALALLRLDNL--------FIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIAD----- 162 (766)
Q Consensus 105 ---------a~~ll~~d~~--------~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~----- 162 (766)
+...+. +++ ....|.| . ...+|+|||++|++++.|++.||++|.|.+
T Consensus 78 ~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~i~v-----p-----~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~ 146 (174)
T 1j4w_A 78 PGGPGPGGRGRGRGQ-GNWNMGPPGGLQEFNFIV-----P-----TGKTGLIIGKGGETIKSISQQSGARIELQRNPPPN 146 (174)
T ss_dssp ---------------------------CEEEEEE-----E-----TTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTT
T ss_pred CCCCCCCCCCCCCCC-CccccCCCCCcEEEEEEE-----C-----hHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCC
Confidence 011111 110 0111111 1 255999999999999999999999999986
Q ss_pred -----ceEEEEcchhhHHHHHHHHHHhh
Q psy8224 163 -----SKIHVLGSYQNVQVALKALSNLI 185 (766)
Q Consensus 163 -----~~v~iiG~~~~l~~ar~~i~~~~ 185 (766)
++|.|.|+.++++.|+..|..++
T Consensus 147 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 56999999999999999998764
No 10
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=126.60 Aligned_cols=136 Identities=18% Similarity=0.290 Sum_probs=109.5
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc------cCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC---C
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK------SRNVEIRLSPETEDISNLQKAADFVKAFVYG---F 100 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~------~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~g---f 100 (766)
++..+.||.+.+|.|||+.|++++.|.+.+|++|.|+.. ++.|.|.+ ++..+.+|+..|..+... +
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-----~~e~v~~A~~~I~~~~~e~~~~ 77 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-----PPEAQFKAQGRIYGKLKEENFF 77 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHTTSS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999999999999999753 34688887 789999999999877542 1
Q ss_pred ChhhHHhhcccccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeCc---------eEEEEcch
Q psy8224 101 DVDDALALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIADS---------KIHVLGSY 171 (766)
Q Consensus 101 ~~~~a~~ll~~d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~~---------~v~iiG~~ 171 (766)
++.. +..+...|.|. ...+|+|||++|++++.|++.|||+|.|.+. .|.|.|+.
T Consensus 78 ~~~~-------~~~~~~~i~vp----------~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~ 140 (163)
T 3krm_A 78 GPKE-------EVKLETHIRVP----------ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHF 140 (163)
T ss_dssp CSSC-------CCCEEEEEEEE----------TTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECH
T ss_pred cccc-------CCceEEEEEcC----------hhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCH
Confidence 2210 11111112221 2569999999999999999999999999865 79999999
Q ss_pred hhHHHHHHHHHHhhcC
Q psy8224 172 QNVQVALKALSNLILG 187 (766)
Q Consensus 172 ~~l~~ar~~i~~~~~~ 187 (766)
++++.|+..|..+++.
T Consensus 141 ~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 141 YASQMAQRKIRDILAQ 156 (163)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998853
No 11
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=99.30 E-value=3.4e-13 Score=139.78 Aligned_cols=63 Identities=30% Similarity=0.537 Sum_probs=53.3
Q ss_pred hhhhcccCCCCCCCeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEeccCCCCC
Q psy8224 621 YMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTCDRCKDP 694 (766)
Q Consensus 621 yp~~s~~NHsC~PN~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~ 694 (766)
...++++||||+||+..++.+ +.++.++|+|||++|||||++|++.+|+. +.|.|.|.+|.-.
T Consensus 203 g~~arfiNHSC~PN~~~~~~~-~~~i~i~A~RdI~~GEELt~~Y~~~~~~~----------~~f~C~C~~c~cr 265 (273)
T 3s8p_A 203 LGPAAFINHDCRPNCKFVSTG-RDTACVKALRDIEPGEEISCYYGDGFFGE----------NNEFCECYTCERR 265 (273)
T ss_dssp ESGGGGCEECSSCSEEEEEEE-TTEEEEEESSCBCTTCBCEECCCTTTTSG----------GGTTCCCHHHHHH
T ss_pred cchHHhhCCCCCCCeEEEEcC-CCEEEEEECceeCCCCEEEEecCchhcCC----------CCeEEECCCCcCC
Confidence 345689999999999887743 45899999999999999999999987763 5799999999643
No 12
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=9.2e-12 Score=120.44 Aligned_cols=137 Identities=14% Similarity=0.141 Sum_probs=105.8
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc---cCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhhHH
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK---SRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDAL 106 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~---~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~a~ 106 (766)
-+..+.||++.+|.|||+.|++++.|++.+|++|+++.. ++.|.|.+ ++..+.+|+.+|..+... +..
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~e----~~~ 75 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKLEE----DIS 75 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEE-----EHHHHHHHHHHHHHHHHH----HHT
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHHh----hcc
Confidence 567899999999999999999999999999999999865 24788887 578999999988755321 000
Q ss_pred hhcc-----cccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeC--------ceEEEEcchhh
Q psy8224 107 ALLR-----LDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIAD--------SKIHVLGSYQN 173 (766)
Q Consensus 107 ~ll~-----~d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~--------~~v~iiG~~~~ 173 (766)
.-.. ...-....+.|. ...+|+|||++|++++.|++.|||+|.|.+ ++|.|.|+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~i~vp----------~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~ 145 (160)
T 2jzx_A 76 SSMTNSTAASRPPVTLRLVVP----------ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQS 145 (160)
T ss_dssp SCCCSSSCCCCCSEEEEEEEE----------HHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHH
T ss_pred ccCCCCccCCCCCEEEEEEEC----------hhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHH
Confidence 0000 000011111111 256999999999999999999999999974 67999999999
Q ss_pred HHHHHHHHHHhh
Q psy8224 174 VQVALKALSNLI 185 (766)
Q Consensus 174 l~~ar~~i~~~~ 185 (766)
++.|+..|..++
T Consensus 146 v~~A~~~I~~~i 157 (160)
T 2jzx_A 146 IIECVKQICVVM 157 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998776
No 13
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=99.26 E-value=8.4e-13 Score=121.37 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=64.0
Q ss_pred hhhhhcccCCCeeeecccCCCCCccccc--------cccccchhhhhhhcccCCCCCCCeEEEEEeCCeEEEEEEecccC
Q psy8224 584 LIALVNICKGDIISTTYTQPFWGTMDRR--------LHLRMSKWIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIR 655 (766)
Q Consensus 584 ~~A~r~I~~GeeI~~sY~~~~~~~~~r~--------~~~~i~~glyp~~s~~NHsC~PN~~~~~~~~g~~l~vra~r~I~ 655 (766)
|+|.++|++|+.|.. |.-......+.. .....+..++|.++++||||+||+...+...+.++.++|+|||+
T Consensus 18 vfA~~~I~~G~~I~e-y~g~vi~~~e~~~~~~~y~f~~~~d~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~ 96 (119)
T 1n3j_A 18 VFARKSFEKGELVEE-CLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIA 96 (119)
T ss_dssp EEECCCBCSCEEECC-CCCEEECSHHHHHHSCSEEEEETTEEEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBC
T ss_pred EEECCcCCCCCEEEE-eeEEEECHHHHhhccCCeEEEeCCccccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccC
Confidence 556778888888863 432211111100 00114567789999999999999999985445789999999999
Q ss_pred CCCeEEeecCCCCCCH
Q psy8224 656 KGDIISTTYTQPFWGT 671 (766)
Q Consensus 656 ~GeeI~isY~~~~~~~ 671 (766)
+|||||++|++.+|..
T Consensus 97 ~GeElt~~Y~~~~~~~ 112 (119)
T 1n3j_A 97 IGEEITISYGDDYWLS 112 (119)
T ss_dssp SSEEECCCCCCCCCCC
T ss_pred CCCEEEEecCchhhcC
Confidence 9999999999999876
No 14
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=99.11 E-value=4e-11 Score=119.10 Aligned_cols=61 Identities=23% Similarity=0.635 Sum_probs=45.3
Q ss_pred hhcccCCCCCCCeEEEEEe-CC-eEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEec--cCCC
Q psy8224 623 KTAMLSHNCKPNTKHVIVN-ED-FSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTC--DRCK 692 (766)
Q Consensus 623 ~~s~~NHsC~PN~~~~~~~-~g-~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~C--~rC~ 692 (766)
.+.++||||+||+...+.. +| .++.++|+|+|++|||||++|+...|.. .+.|.|.| +.|.
T Consensus 124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~---------~~~~~C~Cgs~~Cr 188 (192)
T 2w5y_A 124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA---------SNKLPCNCGAKKCR 188 (192)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC----------------CCBCCCCCTTCC
T ss_pred hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcC---------CCCceeECCCCCCc
Confidence 4678999999999876421 23 5899999999999999999999987753 36899999 4564
No 15
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.00 E-value=1.5e-09 Score=102.85 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=94.5
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEc-ccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhhHHhh
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNL-KSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALAL 108 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~-~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~a~~l 108 (766)
.+.++.||++.+|.+||+.|..++.|++.+|+.+...+ ....+.+.+ .+|..+.+|+.++. +
T Consensus 4 ~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~----~~p~~v~~~~~~l~-------------~ 66 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYG----EDQDAVKKARSFLE-------------F 66 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHC-------------E
T ss_pred eEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCCchheeecc----CCHHHHHHHHHhhh-------------c
Confidence 45689999999999999999999999999996543333 333444443 57888888876432 1
Q ss_pred cccccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCc-eEEEeCc------------eEEEEcchhhHH
Q psy8224 109 LRLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKT-RIVIADS------------KIHVLGSYQNVQ 175 (766)
Q Consensus 109 l~~d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~-~I~v~~~------------~v~iiG~~~~l~ 175 (766)
++.. +.+ . ...+|++|||+|++++.|.++||+ +|.|.+. +|.|+|+.++++
T Consensus 67 ---~e~~---v~V-----p-----~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~ 130 (144)
T 2qnd_A 67 ---AEDV---IQV-----P-----RNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIA 130 (144)
T ss_dssp ---EEEE---EEE-----E-----GGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHH
T ss_pred ---ceEE---EEE-----C-----HHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHH
Confidence 1110 111 1 155999999999999999999996 9999631 388999999999
Q ss_pred HHHHHHHHhhcC
Q psy8224 176 VALKALSNLILG 187 (766)
Q Consensus 176 ~ar~~i~~~~~~ 187 (766)
.|+..|+..+..
T Consensus 131 ~Ak~li~~~l~~ 142 (144)
T 2qnd_A 131 NATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 16
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=98.90 E-value=8.1e-10 Score=112.51 Aligned_cols=59 Identities=22% Similarity=0.423 Sum_probs=47.4
Q ss_pred hhcccCCCCCCCeEEEEE--eCCeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEeccC
Q psy8224 623 KTAMLSHNCKPNTKHVIV--NEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTCDR 690 (766)
Q Consensus 623 ~~s~~NHsC~PN~~~~~~--~~g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~C~r 690 (766)
.+.++||||+||+..... +...++.++|+|||++|||||++|....|.. ...|.|.|-.
T Consensus 146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~---------~~~~~C~CGs 206 (222)
T 3ope_A 146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNV---------EKQQLCKCGF 206 (222)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCC---------SCCCBCCCCC
T ss_pred cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCC---------cCCCEeeCCC
Confidence 345789999999977652 3346899999999999999999999987753 2468888863
No 17
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=111.56 Aligned_cols=57 Identities=28% Similarity=0.526 Sum_probs=46.7
Q ss_pred hhcccCCCCCCCeEEEE--EeCCeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEecc
Q psy8224 623 KTAMLSHNCKPNTKHVI--VNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTCD 689 (766)
Q Consensus 623 ~~s~~NHsC~PN~~~~~--~~~g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~C~ 689 (766)
.+.++||||+||+.... .+...++.++|+|||++|||||++|....++ ...|.|.|-
T Consensus 165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~----------~~~~~C~CG 223 (232)
T 3ooi_A 165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLG----------NGKTVCKCG 223 (232)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTT----------CTTCBCCCC
T ss_pred ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCC----------CCCcEeECC
Confidence 35688999999997754 3344789999999999999999999987754 346999994
No 18
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=98.77 E-value=2.4e-09 Score=104.08 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=46.1
Q ss_pred hcccCCCCCCCeEEEE--EeCCeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHh
Q psy8224 624 TAMLSHNCKPNTKHVI--VNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLR 679 (766)
Q Consensus 624 ~s~~NHsC~PN~~~~~--~~~g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~ 679 (766)
+.++||||+||+.... .+...++.++|+|||++|||||++|++.......|+..|+
T Consensus 108 aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~L~ 165 (166)
T 3f9x_A 108 GRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIEAHPWLK 165 (166)
T ss_dssp GGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCHHHHHHCGGGG
T ss_pred hheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChhhHhhhCchhc
Confidence 4678999999986654 2333689999999999999999999999887777776665
No 19
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=98.76 E-value=3.6e-09 Score=110.92 Aligned_cols=57 Identities=19% Similarity=0.487 Sum_probs=45.1
Q ss_pred hcccCCCCCCCeEEEE--EeCCeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEeccC
Q psy8224 624 TAMLSHNCKPNTKHVI--VNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTCDR 690 (766)
Q Consensus 624 ~s~~NHsC~PN~~~~~--~~~g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~C~r 690 (766)
+.++||||+||+.... ++...++.++|+|||++|||||++|....++ ...|.|.|-.
T Consensus 191 aRFiNHSC~PN~~~~~~~v~g~~ri~~fA~RdI~~GEELT~dY~~~~~~----------~~~~~C~CGs 249 (278)
T 3h6l_A 191 SRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYG----------KEAQKCFCGS 249 (278)
T ss_dssp GGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTTEEC----------SSCEECCCCC
T ss_pred hhhcccCCCCCceeEEEEeCCceEEEEEECCccCCCCEEEEecCCCcCC----------CCCcEeECCC
Confidence 4578999999975443 3334689999999999999999999976543 3469999954
No 20
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.69 E-value=6.3e-09 Score=108.18 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=38.6
Q ss_pred hhcccCCCCCCCeEEEEE-eC--CeEEEEEEecccCCCCeEEeecCCCCC
Q psy8224 623 KTAMLSHNCKPNTKHVIV-NE--DFSLQLIALVNIRKGDIISTTYTQPFW 669 (766)
Q Consensus 623 ~~s~~NHsC~PN~~~~~~-~~--g~~l~vra~r~I~~GeeI~isY~~~~~ 669 (766)
.+.++||||+||+...+. +. +..+.++|+|||++|||||++|.....
T Consensus 186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~~ 235 (261)
T 2f69_A 186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHS 235 (261)
T ss_dssp CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSC
T ss_pred ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCccc
Confidence 356889999999988763 22 344599999999999999999997765
No 21
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=98.69 E-value=2.2e-09 Score=113.28 Aligned_cols=57 Identities=25% Similarity=0.603 Sum_probs=43.8
Q ss_pred hcccCCCCCCCeEEE--EEeC----CeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEec
Q psy8224 624 TAMLSHNCKPNTKHV--IVNE----DFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTC 688 (766)
Q Consensus 624 ~s~~NHsC~PN~~~~--~~~~----g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~C 688 (766)
+.++||||+||+... |... ..++.++|+|+|++|||||++|++.+|.. ....|.|.|
T Consensus 217 aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~--------~~~~~~C~C 279 (287)
T 3hna_A 217 SRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDI--------KGKLFSCRC 279 (287)
T ss_dssp GGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHH--------HTTTCCCCC
T ss_pred hheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCccccc--------CCCcCEeeC
Confidence 457799999999753 3221 14999999999999999999999654432 134799999
No 22
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=98.66 E-value=3.4e-09 Score=85.99 Aligned_cols=44 Identities=34% Similarity=0.721 Sum_probs=40.7
Q ss_pred CCcccccCCcccCCCCCCCCcccCCchhhccccccccCCCcccc
Q psy8224 314 SGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYK 357 (766)
Q Consensus 314 ~~~C~~C~~~~~~~C~~C~~v~YCs~~cq~~~w~~Hk~~C~~l~ 357 (766)
.+.|..|+..+..+|++|+.++|||++||..||+.|+.+|..+.
T Consensus 17 ~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~ 60 (64)
T 2odd_A 17 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL 60 (64)
T ss_dssp SSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSC
T ss_pred CCcCccccCCCcccCCCCCChhhCCHHHHHHHHHHHhHHHhccc
Confidence 46899999999999999999999999999999999999998653
No 23
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.66 E-value=4.9e-09 Score=81.35 Aligned_cols=49 Identities=33% Similarity=0.766 Sum_probs=38.3
Q ss_pred cccccCCCCcccccCCcccCCCCCCCCcccCCchhhccccccccCCCcc
Q psy8224 307 NVDKKMDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355 (766)
Q Consensus 307 ~~~~~~~~~~C~~C~~~~~~~C~~C~~v~YCs~~cq~~~w~~Hk~~C~~ 355 (766)
++|+....+.|..|+.++..+|++|+.++|||++||..||+.|+.+|..
T Consensus 2 ~~~~~~~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~~ 50 (52)
T 2jw6_A 2 AMDAERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ 50 (52)
T ss_dssp ---------CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTTGGGTTTC
T ss_pred CcCccccCCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHHHHCHHHcc
Confidence 3556667789999999999999999999999999999999999999974
No 24
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=98.64 E-value=8.3e-09 Score=94.55 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=48.8
Q ss_pred EEEeecccccccccccCCceeeeecCccchhhhhhhcccCCCeeeecccCCCCCccc
Q psy8224 553 IRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMD 609 (766)
Q Consensus 553 ~~gLyp~~SllNHSC~PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~~~ 609 (766)
+..+++.++++||||.||+...+......+.++|+|+|++||||+++|++.||....
T Consensus 58 ~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~r~ 114 (119)
T 1n3j_A 58 SAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRP 114 (119)
T ss_dssp EEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCCCCCCC
T ss_pred cccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchhhcCcc
Confidence 456788999999999999998872234478899999999999999999999998843
No 25
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=98.60 E-value=2.7e-08 Score=105.58 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=39.1
Q ss_pred hhcccCCCCCCCeEEE--EEeC----CeEEEEEEecccCCCCeEEeecCCCCC
Q psy8224 623 KTAMLSHNCKPNTKHV--IVNE----DFSLQLIALVNIRKGDIISTTYTQPFW 669 (766)
Q Consensus 623 ~~s~~NHsC~PN~~~~--~~~~----g~~l~vra~r~I~~GeeI~isY~~~~~ 669 (766)
.+.++||||+||+... +.+. ..++.++|+|+|++|||||++|.+..+
T Consensus 213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~ 265 (299)
T 1mvh_A 213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD 265 (299)
T ss_dssp GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCccc
Confidence 4568999999999764 3221 258999999999999999999999887
No 26
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=98.57 E-value=1.2e-08 Score=84.04 Aligned_cols=45 Identities=29% Similarity=0.803 Sum_probs=41.7
Q ss_pred CCcccccCCcccCCCCCCCCcccCCchhhccccccccCCCccccc
Q psy8224 314 SGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYKV 358 (766)
Q Consensus 314 ~~~C~~C~~~~~~~C~~C~~v~YCs~~cq~~~w~~Hk~~C~~l~v 358 (766)
.+.|..|+.++.++|++|+.++|||++||..||+.|+.+|..+..
T Consensus 15 ~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~ 59 (70)
T 2d8q_A 15 RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ 59 (70)
T ss_dssp CCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred CCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999987653
No 27
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=98.57 E-value=3.7e-08 Score=104.86 Aligned_cols=66 Identities=26% Similarity=0.453 Sum_probs=36.7
Q ss_pred hhcccCCCCCCCeEEEEEeCC------eEEEEEEecccCCCCeEEeecCCCCCCHHH-HHHHHhCCCCcEEec
Q psy8224 623 KTAMLSHNCKPNTKHVIVNED------FSLQLIALVNIRKGDIISTTYTQPFWGTMD-RRLHLRMSKCFDCTC 688 (766)
Q Consensus 623 ~~s~~NHsC~PN~~~~~~~~g------~~l~vra~r~I~~GeeI~isY~~~~~~~~~-Rr~~L~~~y~F~C~C 688 (766)
.+.++||||+||+.......+ .++.++|+|+|++|||||++|.+.+|.... .....+....|.|.|
T Consensus 220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~C 292 (302)
T 1ml9_A 220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 292 (302)
T ss_dssp GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeC
Confidence 356899999999987543111 489999999999999999999998875422 222222335689998
No 28
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=98.57 E-value=2.2e-08 Score=102.63 Aligned_cols=67 Identities=28% Similarity=0.517 Sum_probs=54.2
Q ss_pred cccccccccCCceeEEEeecc-cccccccccCCceeeeecCccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 539 TNAFDIRRSVGKIKIRGIYMK-TAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 539 ~Naf~i~~~~~~~~~~gLyp~-~SllNHSC~PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.|.|.+..+. .....++|+. ++++||||.||+...+ ..+..+.++|+++|++||||+++|++.+|+.
T Consensus 156 ~n~f~i~~~~-~~~~~~l~~~~ar~iNHSC~PN~~~~~-~~~~~i~v~A~rdI~~GEElt~~Y~~~~~~~ 223 (247)
T 3rq4_A 156 ENDFSIMYST-RKRSAQLWLGPAAFINHDCKPNCKFVP-ADGNAACVKVLRDIEPGDEVTCFYGEGFFGE 223 (247)
T ss_dssp TSCTTEEEET-TTTEEEEEESGGGGCEECSSCSEEEEE-ETTTEEEEEESSCBCTTCBCEECCCTTSSSG
T ss_pred CCcEEEEecC-CcccceeecchhhhcCCCCCCCEEEEE-eCCCEEEEEECCcCCCCCEEEEecCchhcCC
Confidence 4666665432 3456788886 8999999999997776 4456899999999999999999999998865
No 29
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=98.51 E-value=2.9e-08 Score=105.47 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=36.7
Q ss_pred hcccCCCCCCCeEEEEE-eCC-eE-EEEEEecccCCCCeEEeecCCCC
Q psy8224 624 TAMLSHNCKPNTKHVIV-NED-FS-LQLIALVNIRKGDIISTTYTQPF 668 (766)
Q Consensus 624 ~s~~NHsC~PN~~~~~~-~~g-~~-l~vra~r~I~~GeeI~isY~~~~ 668 (766)
+.++||||+||+...+. ..+ .+ +.++|+|||++|||||++|....
T Consensus 241 ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~~ 288 (293)
T 1h3i_A 241 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH 288 (293)
T ss_dssp GGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred eeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCCC
Confidence 55889999999988873 222 34 58999999999999999998654
No 30
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=98.48 E-value=2.7e-08 Score=79.49 Aligned_cols=45 Identities=33% Similarity=0.702 Sum_probs=41.2
Q ss_pred CCCCcccccCCcccCCCCCCCCcccCCchhhccccccccCCCccc
Q psy8224 312 MDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKY 356 (766)
Q Consensus 312 ~~~~~C~~C~~~~~~~C~~C~~v~YCs~~cq~~~w~~Hk~~C~~l 356 (766)
...+.|..|+..+.++|++|+.++|||++||..||+.|+.+|..+
T Consensus 11 ~~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~ 55 (60)
T 2od1_A 11 DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQT 55 (60)
T ss_dssp CCSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHHHHTTTSSCS
T ss_pred CCCCccccCCCcccccCCCCCCeeecCHHHHHHHHHHHhHHHccc
Confidence 345789999999999999999999999999999999999999765
No 31
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.47 E-value=1.6e-07 Score=78.82 Aligned_cols=53 Identities=28% Similarity=0.462 Sum_probs=48.8
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC----------ceEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD----------SKIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~----------~~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|++++.|+..|||+|.|.+ ..|.|.|+.++++.|+..|..++.
T Consensus 12 ~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 12 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred HHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999986 479999999999999999998764
No 32
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.46 E-value=3.3e-08 Score=79.02 Aligned_cols=45 Identities=33% Similarity=0.701 Sum_probs=41.2
Q ss_pred CCCcccccCCcccCCCCCCCCcccCCchhhccccccccCCCcccc
Q psy8224 313 DSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYK 357 (766)
Q Consensus 313 ~~~~C~~C~~~~~~~C~~C~~v~YCs~~cq~~~w~~Hk~~C~~l~ 357 (766)
..+.|..|+..+..+|++|+.++|||++||..||+.|+.+|..+.
T Consensus 14 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~ 58 (60)
T 2dj8_A 14 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS 58 (60)
T ss_dssp CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSS
T ss_pred CCcccccCCCCCcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999999999999999997663
No 33
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.39 E-value=2.3e-07 Score=80.01 Aligned_cols=53 Identities=28% Similarity=0.462 Sum_probs=49.2
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC----------ceEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD----------SKIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~----------~~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|++++.|+..|||+|.|.+ ..|.|.|+.++++.|+..|..++.
T Consensus 12 ~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 12 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (87)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999986 379999999999999999999874
No 34
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=98.39 E-value=2.4e-07 Score=98.18 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=44.7
Q ss_pred hhcccCCCCCCCeEEEE--EeC----CeEEEEEEecccCCCCeEEeecCCCCCCHHHH----HHHHhCCCCcEEec
Q psy8224 623 KTAMLSHNCKPNTKHVI--VNE----DFSLQLIALVNIRKGDIISTTYTQPFWGTMDR----RLHLRMSKCFDCTC 688 (766)
Q Consensus 623 ~~s~~NHsC~PN~~~~~--~~~----g~~l~vra~r~I~~GeeI~isY~~~~~~~~~R----r~~L~~~y~F~C~C 688 (766)
.+.++||||+||+.... .+. ..++.++|+|+|++|||||++|........+. ...-+....|.|.|
T Consensus 215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~d~~~~~~~~~~~C~C 290 (300)
T 2r3a_A 215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKC 290 (300)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGSSCC--------------CCCCBCCC
T ss_pred hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCCccccccccccccccccccCCCEeeC
Confidence 45689999999998753 221 25899999999999999999999874321110 01112235689988
No 35
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.38 E-value=2.6e-07 Score=77.52 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=49.2
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC-------ceEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD-------SKIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~-------~~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|++++.|+..|||+|.|.+ ..|.|.|+.++++.|+..|..++.
T Consensus 14 ~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 14 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999986 679999999999999999998875
No 36
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.38 E-value=3e-07 Score=78.86 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=48.1
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-e--------EEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-K--------IHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-~--------v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|+|++.|++.|||+|.|.++ + |.|.|+.++++.|+++|..++.
T Consensus 23 ~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 23 GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 459999999999999999999999999753 3 9999999999999999998763
No 37
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.38 E-value=3.1e-07 Score=80.00 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=50.1
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-------eEEEEcchhhHHHHHHHHHHhhcC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-------KIHVLGSYQNVQVALKALSNLILG 187 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-------~v~iiG~~~~l~~ar~~i~~~~~~ 187 (766)
..+|+|||++|+|++.|++.|||+|.|.+. +|.|.|+.++++.|+..|..++..
T Consensus 24 ~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 24 GMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 569999999999999999999999999874 799999999999999999999854
No 38
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=98.35 E-value=3.4e-07 Score=96.71 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=47.3
Q ss_pred hhcccCCCCCCCeEEEEEe-CC--eEEEEEEecccCCCCeEEeecCCCCCCHHH--HHHHHh-CCCCcEEec
Q psy8224 623 KTAMLSHNCKPNTKHVIVN-ED--FSLQLIALVNIRKGDIISTTYTQPFWGTMD--RRLHLR-MSKCFDCTC 688 (766)
Q Consensus 623 ~~s~~NHsC~PN~~~~~~~-~g--~~l~vra~r~I~~GeeI~isY~~~~~~~~~--Rr~~L~-~~y~F~C~C 688 (766)
.+.++||||+||+....+. ++ .++.++|+|+|++|||||++|.+.+|.... ..+.+. ....|.|.|
T Consensus 205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~C 276 (290)
T 3bo5_A 205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYC 276 (290)
T ss_dssp GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCC
T ss_pred chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccC
Confidence 4568999999999876432 22 689999999999999999999998875310 000111 124688988
No 39
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.34 E-value=5.1e-07 Score=76.88 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=49.0
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-------eEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-------KIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-------~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|++++.|++.|||+|.|.+. .|.|.|+.++++.|+..|..++.
T Consensus 16 ~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 16 DLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp TTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999873 79999999999999999998874
No 40
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.34 E-value=6.2e-07 Score=80.37 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=51.1
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC----------ceEEEEcchhhHHHHHHHHHHhhcCCC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD----------SKIHVLGSYQNVQVALKALSNLILGSP 189 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~----------~~v~iiG~~~~l~~ar~~i~~~~~~~~ 189 (766)
..+|+||||+|+|++.|++.|||+|.|.+ ++|.|.|+.++++.|+..|..++....
T Consensus 16 ~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 16 HKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred HHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 45999999999999999999999999986 469999999999999999999996543
No 41
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=98.32 E-value=2.2e-07 Score=96.28 Aligned_cols=50 Identities=32% Similarity=0.502 Sum_probs=43.8
Q ss_pred ecccccccccccCCceeeeecCccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 557 YMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 557 yp~~SllNHSC~PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
...++++||||.||+...+ ++...+.++|+|+|++||||+++|++.+|+.
T Consensus 203 g~~arfiNHSC~PN~~~~~-~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~~ 252 (273)
T 3s8p_A 203 LGPAAFINHDCRPNCKFVS-TGRDTACVKALRDIEPGEEISCYYGDGFFGE 252 (273)
T ss_dssp ESGGGGCEECSSCSEEEEE-EETTEEEEEESSCBCTTCBCEECCCTTTTSG
T ss_pred cchHHhhCCCCCCCeEEEE-cCCCEEEEEECceeCCCCEEEEecCchhcCC
Confidence 3467999999999998887 5555789999999999999999999998875
No 42
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.29 E-value=5.9e-07 Score=78.64 Aligned_cols=53 Identities=28% Similarity=0.306 Sum_probs=49.3
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc------eEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS------KIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~------~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
+.+|+|||++|++++.|++.|||+|.|.+. +|.|.|..++++.|++.|..+..
T Consensus 26 ~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 26 RVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEE 84 (95)
T ss_dssp TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999875 79999999999999999999873
No 43
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.29 E-value=5e-07 Score=78.22 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=49.3
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC-------ceEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD-------SKIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~-------~~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|++++.|++.|||+|.|.+ +.|.|.|+.++++.|+..|..++.
T Consensus 23 ~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 23 DLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999986 579999999999999999998874
No 44
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.29 E-value=5.4e-07 Score=80.35 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=49.2
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC---------ceEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD---------SKIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~---------~~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|+|++.|+..|||+|.|.+ .+|.|.|+.++++.|+..|..++.
T Consensus 24 ~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 24 RSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVS 85 (104)
T ss_dssp TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999984 579999999999999999999885
No 45
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.27 E-value=1e-06 Score=76.98 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=50.5
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc---------eEEEEcchhhHHHHHHHHHHhhcCCC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS---------KIHVLGSYQNVQVALKALSNLILGSP 189 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~---------~v~iiG~~~~l~~ar~~i~~~~~~~~ 189 (766)
..+|+||||+|+|++.|++.|||+|.|.+. .|.|.|+.++++.|+..|..++....
T Consensus 24 ~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 24 SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 459999999999999999999999999753 39999999999999999999996543
No 46
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.27 E-value=7.9e-07 Score=75.67 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=49.2
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC-------ceEEEEcchhhHHHHHHHHHHhhcCC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD-------SKIHVLGSYQNVQVALKALSNLILGS 188 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~-------~~v~iiG~~~~l~~ar~~i~~~~~~~ 188 (766)
..+|+|||++|++++.|++.|||+|.|.+ ..|.|.|+.++++.|+..|..++...
T Consensus 15 ~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 15 NLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred HhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999976 36999999999999999999988644
No 47
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.25 E-value=8.2e-07 Score=79.07 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=49.3
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-----eEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-----~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|++++.|+..|||+|.|.+. +|.|.|+.+++..|+..|..++.
T Consensus 26 ~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 26 DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVK 83 (104)
T ss_dssp HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 559999999999999999999999999875 89999999999999999998874
No 48
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=98.24 E-value=7.3e-07 Score=101.28 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=42.6
Q ss_pred hhhhhhcccCCCCCCCeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEec
Q psy8224 619 WIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTC 688 (766)
Q Consensus 619 glyp~~s~~NHsC~PN~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~C 688 (766)
+++|.+.++||||.||...+. .+++.+.++|.++|++||||||||++. + ...|...|||.+.-
T Consensus 268 ~LvP~~Dm~NH~~~~~~~~~~-~~~~~~~~~a~~~i~~Geei~isYG~~--~----n~~Ll~~YGFv~~~ 330 (497)
T 3smt_A 268 ALIPLWDMCNHTNGLITTGYN-LEDDRCECVALQDFRAGEQIYIFYGTR--S----NAEFVIHSGFFFDN 330 (497)
T ss_dssp EECTTGGGCEECSCSEEEEEE-TTTTEEEEEESSCBCTTCEEEECCCSC--C----HHHHHHHHSCCCTT
T ss_pred eeechHHhhcCCCcccceeee-ccCCeEEEEeCCccCCCCEEEEeCCCC--C----hHHHHHHCCCCCCC
Confidence 455555555555555433222 135678899999999999999999974 2 35666679998754
No 49
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=98.23 E-value=3.6e-07 Score=102.70 Aligned_cols=64 Identities=23% Similarity=0.174 Sum_probs=55.6
Q ss_pred cchhhhhhhcccCCCCCCCeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEe
Q psy8224 616 MSKWIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCT 687 (766)
Q Consensus 616 i~~glyp~~s~~NHsC~PN~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~ 687 (766)
.+.++.|.+.++||||.||+...| +++.+.++|.++|++||||++||++. + ...|...|||...
T Consensus 215 ~~~~LvP~~D~~NH~~~~~~~~~~--~~~~~~~~a~~~i~~Geei~~~YG~~--~----n~~ll~~YGF~~~ 278 (449)
T 3qxy_A 215 NSPVMVPAADILNHLANHNANLEY--SANCLRMVATQPIPKGHEIFNTYGQM--A----NWQLIHMYGFVEP 278 (449)
T ss_dssp CCCBBCTTGGGCEECSSCSEEEEE--CSSEEEEEESSCBCTTCEEEECCSSC--C----HHHHHHHHSCCCC
T ss_pred CceeEeecHHHhcCCCCCCeEEEE--eCCeEEEEECCCcCCCchhhccCCCC--C----HHHHHHhCCCCCC
Confidence 467899999999999999999888 46789999999999999999999983 2 4666777999874
No 50
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.23 E-value=1.1e-06 Score=72.54 Aligned_cols=52 Identities=29% Similarity=0.307 Sum_probs=47.3
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-----eEEEEcchhhHHHHHHHHHHhh
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLI 185 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-----~v~iiG~~~~l~~ar~~i~~~~ 185 (766)
..+|+|||++|++++.|++.|||+|.|.+. +|.|.|+.+.+..|+..|..+.
T Consensus 14 ~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 14 KFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred HHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 459999999999999999999999999753 8999999999999999998764
No 51
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.22 E-value=1e-06 Score=73.30 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=48.9
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-----eEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-----~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|++++.|++.|||+|.|.+. .|.|.|+.+++..|+..|...++
T Consensus 14 ~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 14 KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 559999999999999999999999999875 59999999999999999988774
No 52
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.19 E-value=1.4e-06 Score=77.81 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=49.6
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-------eEEEEcchhhHHHHHHHHHHhhcCC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-------KIHVLGSYQNVQVALKALSNLILGS 188 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-------~v~iiG~~~~l~~ar~~i~~~~~~~ 188 (766)
..+|+||||+|+|++.|++.|||+|.|.++ +|.|.|+.++++.|++.|..++...
T Consensus 20 ~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 20 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp TTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 459999999999999999999999999742 6999999999999999999998543
No 53
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=2.2e-06 Score=72.98 Aligned_cols=52 Identities=31% Similarity=0.365 Sum_probs=48.1
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEe----CceEEEEcchhhHHHHHHHHHHhh
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIA----DSKIHVLGSYQNVQVALKALSNLI 185 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~----~~~v~iiG~~~~l~~ar~~i~~~~ 185 (766)
..+|.||||+|+|++.||+.|||+|.|. +..|.|.|+.+++..|++.|...+
T Consensus 19 ~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 19 RVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHI 74 (83)
T ss_dssp HHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEECTTTHHHHHHHHHHHH
T ss_pred HHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcCHHHHHHHHHHHHHHH
Confidence 5599999999999999999999999997 356999999999999999999975
No 54
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.10 E-value=2.9e-06 Score=74.57 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=48.1
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc--------eEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS--------KIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~--------~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|++++.|+..|||+|.|.+. .|.|.|+.+++..|+..|..++.
T Consensus 26 ~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 26 KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVG 86 (97)
T ss_dssp TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999653 79999999999999999998863
No 55
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=98.10 E-value=2e-06 Score=81.70 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=39.3
Q ss_pred hcccCCCCCC---CeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCCCC
Q psy8224 624 TAMLSHNCKP---NTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWG 670 (766)
Q Consensus 624 ~s~~NHsC~P---N~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~~~ 670 (766)
+-++||||.| |+..+- .++++.++|+|||++||||+..|.+..++
T Consensus 100 ~RfINhSc~p~eqNl~~~~--~~~~I~~~A~RdI~~GEEL~~dY~~~~~~ 147 (149)
T 2qpw_A 100 LRYVNWACSGEEQNLFPLE--INRAIYYKTLKPIAPGEELLVWYNGEDNP 147 (149)
T ss_dssp GGGCEECBTTBTCCEEEEE--ETTEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred eeeeeccCChhhcCEEEEE--ECCEEEEEEccCCCCCCEEEEccCCccCC
Confidence 5688999999 998754 36899999999999999999999987764
No 56
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.06 E-value=1.7e-05 Score=85.59 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=106.6
Q ss_pred cCCCCceEEEecCCCcchhhhccCc--ccHHHHHHhcCcEEEEEc----------ccCeEEEEeCCCCCCHHHHHHHHHH
Q psy8224 25 KAKHVDMRKVPVPNHRYGPLKENWM--KIFTPIVEHLKLQVRFNL----------KSRNVEIRLSPETEDISNLQKAADF 92 (766)
Q Consensus 25 ~~~~~~~~~i~iP~~r~~~l~~~~~--~i~~~i~~~~~~~i~i~~----------~~~~v~i~~~~~t~d~~~~~ka~~~ 92 (766)
.....-|.++.||+.-.+.|||+.| .-++.|++.++++|.+-- +...|+|.+ .+..+.+|+..
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG-----~~enVE~AR~~ 99 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITG-----YFGDVDRARML 99 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEE-----EHHHHHHHHHH
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEc-----CHHHHHHHHHH
Confidence 3344478899999999999999999 999999999999999932 234688987 88999999999
Q ss_pred HHHHH---c-------CCChhhHHhhcc-ccccee---------------eeeeecccccccc----c---hh-------
Q psy8224 93 VKAFV---Y-------GFDVDDALALLR-LDNLFI---------------ESFEIKDVKTLKG----D---HL------- 132 (766)
Q Consensus 93 i~ai~---~-------gf~~~~a~~ll~-~d~~~~---------------~~~~i~~~~~~~~----~---~~------- 132 (766)
|+++. . +.+..+--+.+. .+.+-+ +.+-|.....+-. . .+
T Consensus 100 I~~l~Pl~i~~elp~~~i~~~~l~~~I~qq~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e 179 (376)
T 3n89_A 100 MRRNCHFTVFMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRES 179 (376)
T ss_dssp HHHSCEEEEEEECTTCSSCHHHHHHHHHHCCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--
T ss_pred HHhcCCceEEEEccccccCcchhhhhhccceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhh
Confidence 98841 0 111101001111 011112 2222222110000 0 00
Q ss_pred --------------hhhhccccCCCC--cHHHHHHHhhCceEEEeC-----------ceEEEEcchhhHHHHHHHHHHhh
Q psy8224 133 --------------SRAIGRLAGKGG--RTKFTIENITKTRIVIAD-----------SKIHVLGSYQNVQVALKALSNLI 185 (766)
Q Consensus 133 --------------~r~~griiG~~G--~t~~~ie~~t~~~I~v~~-----------~~v~iiG~~~~l~~ar~~i~~~~ 185 (766)
....++|||++| .+++-|.+-|||+|.+.+ .+|.|.|+.+++..||+.|..++
T Consensus 180 ~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 180 PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 124567999998 677999999999999863 25999999999999999999876
No 57
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.06 E-value=2.3e-06 Score=74.77 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=48.5
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC-----ceEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD-----SKIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~-----~~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..+|.|||++|+|++.|+..|||+|.|.+ .+|.|.|+.+++..|+..|..++.
T Consensus 26 ~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 26 EHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISA 83 (94)
T ss_dssp TTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999973 689999999999999999998873
No 58
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.04 E-value=1.6e-05 Score=68.07 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=56.9
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcccCe--------EEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRN--------VEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~--------v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||+++++.|||+.|++++.|++.+|++|.|+. ++. |.|.+ +|..+.+|+++|.++.+
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~-~~~~~~~~er~v~I~G-----~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ-DGSQNTNVDKPLRIIG-----DPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS-SSCSSTTSCEEEEEEE-----CHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcC-CCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999986 344 88886 88999999999998853
No 59
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.03 E-value=9.1e-06 Score=67.93 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=57.1
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc--------cCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK--------SRNVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~--------~~~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
.+..+.||++.+|.|||+.|++++.|.+.+|++|.|+.. ++.|.|.+ ++.++.+|+++|.++.
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEE-----SHHHHHHHHHHHHHHC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999864 47888987 6899999999999874
No 60
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=6.4e-06 Score=74.75 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=47.3
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-----------------eEEEEcc-hhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-----------------KIHVLGS-YQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-----------------~v~iiG~-~~~l~~ar~~i~~~~~ 186 (766)
..+|+|||++|+|++.||..|||+|.|.|+ +|.|.+. .+.++.|+..|+.++.
T Consensus 28 n~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 28 NVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp CHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 459999999999999999999999999855 7999865 6789999999999875
No 61
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.92 E-value=1.1e-05 Score=70.38 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=57.7
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc---cCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK---SRNVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~---~~~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
.+..+.||++.++.|||++|++++.|++.+|++|.|+.. ++.|.|.+ ++..+.+|+++|.++.
T Consensus 17 ~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G-----~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 17 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-----TKEGIEKARHEVLLIS 82 (94)
T ss_dssp EEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE-----CHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999753 58999987 4899999999999985
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.91 E-value=8.9e-06 Score=75.27 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=47.8
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-----------------------eEEEEcc-hhhHHHHHHHHHHhhcC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-----------------------KIHVLGS-YQNVQVALKALSNLILG 187 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-----------------------~v~iiG~-~~~l~~ar~~i~~~~~~ 187 (766)
..+|||||++|+|+|.||..|||+|.|.|+ +|.|.|+ .+.+..|+..|+.++.-
T Consensus 22 n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 22 NFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred ceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 359999999999999999999999999763 6888884 56899999999999865
No 63
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=97.89 E-value=2e-05 Score=66.93 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred CceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc-----cCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 29 VDMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK-----SRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 29 ~~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~-----~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
..+..+.||++.+|.|||+.|++++.|.+.+|++|.|+.. ++.|+|.+ ++.++.+|+++|.++..
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG-----SAASISLAQYLINARLS 74 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHTC
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999752 67899987 67999999999998853
No 64
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.89 E-value=1.9e-05 Score=70.21 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=58.1
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEc-------ccCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNL-------KSRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~-------~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||+++++.|||+.|++++.|++.+|++|.|+. .++.|+|.+ ++..+.+|+++|.++..
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G-----~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG-----TQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEc-----CHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999986 478999987 55689999999999864
No 65
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=97.85 E-value=1.6e-05 Score=66.47 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=58.4
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEc-----ccCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNL-----KSRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~-----~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||++.+|.|||+.|+.++.|.+.+|++|.|+. .++.|.|.+ ++.++.+|+++|.++..
T Consensus 5 ~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 5 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG-----SAASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999985 478999987 68999999999998754
No 66
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.82 E-value=2.3e-06 Score=95.76 Aligned_cols=63 Identities=29% Similarity=0.424 Sum_probs=55.6
Q ss_pred eecccccccccccCCceeeeecCccchhhhhhhcccCCCeeeecccCCCCCccccccccccchhh
Q psy8224 556 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWI 620 (766)
Q Consensus 556 Lyp~~SllNHSC~PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~~~r~~~~~i~~gl 620 (766)
|||.+|++||||.||+.+.| ++ ..+.++|+++|++||||+++|++..|+..+|+..+...++|
T Consensus 198 l~p~~s~~NHsC~PN~~~~~-~~-~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~~F 260 (433)
T 3qww_A 198 IFPDVALMNHSCCPNVIVTY-KG-TLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFF 260 (433)
T ss_dssp ECTTGGGSEECSSCSEEEEE-ET-TEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHHSC
T ss_pred ecccccccCCCCCCCceEEE-cC-CEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcCCE
Confidence 79999999999999999999 54 47899999999999999999999999888887776655554
No 67
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=97.81 E-value=2.8e-05 Score=67.54 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=58.4
Q ss_pred CceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc-----cCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 29 VDMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK-----SRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 29 ~~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~-----~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
..+..+.||.+.++.|||+.|++++.|++.++++|.|+.. ++.|+|.+ ++..+.+|+++|.++..
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G-----~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTG-----TPESVQSAKRLLDQIVE 83 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999864 36888987 68999999999998854
No 68
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.80 E-value=9.6e-06 Score=69.76 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=58.7
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcE-EEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQ-VRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~-i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
.+..+.||+++++.+||..|++++.|.+.+|++ |.|+.++|.|.|.. .|..++.+|+++|..+-
T Consensus 15 ~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g----~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 15 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYG----ESADAVKKARGFLEFVE 79 (91)
T ss_dssp EEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHSCCC
T ss_pred eEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEE----CCHHHHHHHHHHHHhhh
Confidence 677899999999999999999999999999998 99997779999997 58899999999998653
No 69
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=2.5e-05 Score=66.41 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=56.0
Q ss_pred CceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEE--cccCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 29 VDMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFN--LKSRNVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 29 ~~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~--~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
..+..+.||++.++.|||++|++++.|++.++++|+|. ..++.|+|.+ ++.++.+|+++|..+.
T Consensus 9 ~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG-----~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTG-----MPENVDRAREEIEAHI 74 (83)
T ss_dssp SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEE-----CTTTHHHHHHHHHHHH
T ss_pred ceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEc-----CHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999999999998 3455667766 6789999999999863
No 70
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=97.77 E-value=4.7e-05 Score=64.58 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=57.4
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc-----cCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK-----SRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~-----~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||++.++.|||+.|++++.|.+.+|++|.|+.. ++.|+|.+ ++.++.+|+++|..+..
T Consensus 7 ~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp EEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999753 46888987 68999999999998753
No 71
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=97.76 E-value=2.6e-05 Score=67.03 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=57.5
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc--------cCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK--------SRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~--------~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||++.+|.|||+.|++++.|.+.+|++|.|+.. ++.|.|.+ ++.++.+|+++|.++..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRVT 74 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999864 36888876 68999999999998854
No 72
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=97.75 E-value=1.8e-06 Score=69.82 Aligned_cols=56 Identities=21% Similarity=0.424 Sum_probs=34.8
Q ss_pred ccccCCceEeeecccccccCCCCCCCcccccCCCCCCCcccCCCCCcccCCCCCc-cccCccCC--CCCCcHhhhhhhh
Q psy8224 372 KDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDCGW-PLCAPRCK--SLPSHQKECKLMK 447 (766)
Q Consensus 372 r~~~~ge~Il~e~P~~~~p~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~-~yCS~~C~--~~~~H~~EC~~l~ 447 (766)
++|.+|++|+.+.|. ...|..|... .+.+|++|+. .|||.+|+ +|..|+.+|..+.
T Consensus 2 ~~~~~G~~il~~~~~--------~~~C~~C~~~------------~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~ 60 (64)
T 2odd_A 2 NLYFQGENLYFQGDS--------SESCWNCGRK------------ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL 60 (64)
T ss_dssp -------------CC--------SSSCTTTSSC------------CCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSC
T ss_pred CcCCCCCEEeeCCCC--------CCcCccccCC------------CcccCCCCCChhhCCHHHHHHHHHHHhHHHhccc
Confidence 579999999999882 4689999873 2789999998 89999998 4888999998543
No 73
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.73 E-value=2.7e-06 Score=95.02 Aligned_cols=63 Identities=29% Similarity=0.453 Sum_probs=55.3
Q ss_pred eecccccccccccCCceeeeecCccchhhhhhhcccCCCeeeecccCCCCCccccccccccchhh
Q psy8224 556 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWI 620 (766)
Q Consensus 556 Lyp~~SllNHSC~PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~~~r~~~~~i~~gl 620 (766)
|||.+|++||||.||+...| + +..+.++|+++|++||||+++|++..++..+|+..+...++|
T Consensus 198 l~~~~s~~NHsC~PN~~~~~-~-~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~~~~~F 260 (429)
T 3qwp_A 198 LYPSISLLNHSCDPNCSIVF-N-GPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCF 260 (429)
T ss_dssp ECTTGGGCEECSSCSEEEEE-E-TTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHHHHHCC
T ss_pred EchhhHhhCcCCCCCeEEEE-e-CCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHhccCCe
Confidence 69999999999999999999 5 457999999999999999999999998888887766655544
No 74
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.73 E-value=2.8e-05 Score=67.77 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=57.2
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc-------cCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK-------SRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~-------~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||+++++.|||+.|++++.|++.++++|.|+.. ++.|.|.+ ++..+.+|+++|.++.+
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-----DPYKVQQAKEMVLELIR 85 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-----CTTTHHHHHHHHHHHHC
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999999753 34588887 66799999999999865
No 75
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=97.72 E-value=2.7e-05 Score=67.22 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=58.1
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc-----cCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK-----SRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~-----~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+.++.||++.++.|||+.|++++.|++.++++|+|+.. ++.|+|.+ ++.++.+|+++|..+..
T Consensus 14 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G-----~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEc-----CHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999863 68899987 58899999999998853
No 76
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=97.70 E-value=1e-05 Score=80.02 Aligned_cols=49 Identities=18% Similarity=0.482 Sum_probs=36.6
Q ss_pred ccccccccccCCceeeee--cCccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCKPNTKHVIV--NEDFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~f~--~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||||.||+...++ +....+.++|+|+|++||||+++|+..+|..
T Consensus 124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~ 174 (192)
T 2w5y_A 124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA 174 (192)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC-----
T ss_pred hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcC
Confidence 467899999999976431 3334688999999999999999999987753
No 77
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=97.70 E-value=7.3e-06 Score=79.28 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=38.0
Q ss_pred ccccccccccCCceee--eecCccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCKPNTKHV--IVNEDFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~--f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||||.||+... +.+...++.++|+|+|.+||||+++|+..++..
T Consensus 107 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~ 157 (166)
T 3f9x_A 107 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKAS 157 (166)
T ss_dssp SGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCHHH
T ss_pred hhheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChhhH
Confidence 3567999999997643 212334688999999999999999999876544
No 78
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.68 E-value=5e-05 Score=67.89 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=57.2
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcc--------cCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLK--------SRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~--------~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+.++.||.+.++.|||+.|++++.|++.++++|+|+.. ++.|+|.+ ++.++.+|+++|..+..
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-----~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-----SPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-----CHHHHHHHHHHHHHHSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-----CHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999999999865 37888876 88999999999998753
No 79
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.67 E-value=6.6e-05 Score=66.92 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=56.2
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEccc-----CeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKS-----RNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~-----~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||++.++.|||+.|++++.|++.++++|+|+.+. +.|+|.. ++.++.+|+++|..+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G-----~~e~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-----PPDRCEHAARIINDLLQ 79 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999997543 3688886 58999999999998853
No 80
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=97.67 E-value=1.7e-05 Score=88.85 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=50.1
Q ss_pred chhhhhhhcccCCCCCCCe---EEEEE------eCCeEEEEEEecccCCCCeEEeecCCCCCCHHHHHHHHhCCCCcEEe
Q psy8224 617 SKWIYMKTAMLSHNCKPNT---KHVIV------NEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCT 687 (766)
Q Consensus 617 ~~glyp~~s~~NHsC~PN~---~~~~~------~~g~~l~vra~r~I~~GeeI~isY~~~~~~~~~Rr~~L~~~y~F~C~ 687 (766)
+.++.|.+-|+||+|.||. .+.+. +.+..++++|.++|++||||++||++.. + ...|...|||...
T Consensus 183 ~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~sYG~~~-~----N~~LL~~YGFv~~ 257 (440)
T 2h21_A 183 NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNK-S----NAELALDYGFIEP 257 (440)
T ss_dssp CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEECSCTTC-C----HHHHHHHSSCCCS
T ss_pred ceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEeCCCCC-C----HHHHHHhCCCCcC
Confidence 4689999999999999974 22221 1246799999999999999999999752 1 3455667999765
Q ss_pred c
Q psy8224 688 C 688 (766)
Q Consensus 688 C 688 (766)
-
T Consensus 258 ~ 258 (440)
T 2h21_A 258 N 258 (440)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.65 E-value=5e-05 Score=70.67 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=46.1
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-------------------------eEEEEcch-h-----hHHHHHHHHH
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-------------------------KIHVLGSY-Q-----NVQVALKALS 182 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-------------------------~v~iiG~~-~-----~l~~ar~~i~ 182 (766)
..+|||||++|.|.|.||..|||+|.|.|+ .|.|.|.- + .+..|++.|.
T Consensus 17 NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~ 96 (140)
T 2bl5_A 17 NFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVK 96 (140)
T ss_dssp CHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred CeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHH
Confidence 349999999999999999999999999872 67788843 3 6888999999
Q ss_pred HhhcCC
Q psy8224 183 NLILGS 188 (766)
Q Consensus 183 ~~~~~~ 188 (766)
.++.-.
T Consensus 97 ~lL~p~ 102 (140)
T 2bl5_A 97 KLLVPA 102 (140)
T ss_dssp HHSSCC
T ss_pred HHCCCC
Confidence 988543
No 82
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=97.64 E-value=7.5e-05 Score=61.49 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=54.8
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEccc---CeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKS---RNVEIRLSPETEDISNLQKAADFVKAF 96 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~---~~v~i~~~~~t~d~~~~~ka~~~i~ai 96 (766)
.+..+.||+..++.|||++|+.++.|++.+|++|.|+... +.|.|.+ ++.++.+|+++|..+
T Consensus 5 ~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G-----~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEG-----DPQGVQQAKRELLEL 69 (71)
T ss_dssp EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEE-----SSHHHHHHHHHHHHT
T ss_pred EEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEc-----CHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999997543 2899998 357899999999875
No 83
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=5.9e-06 Score=93.86 Aligned_cols=65 Identities=25% Similarity=0.480 Sum_probs=51.2
Q ss_pred hhhccccccccccccccccccccccCCCCcccccCCc--ccCCCCCCCCcccCCchhhccccccccCCCcccccc
Q psy8224 287 ETSVEDQKCQLNVDDQKCQLNVDKKMDSGKCEVCKVA--ASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYKVV 359 (766)
Q Consensus 287 g~~ll~e~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~--~~~~C~~C~~v~YCs~~cq~~~w~~Hk~~C~~l~v~ 359 (766)
|.+++.+++.+ .++........|..|+.. ...+|++|+.++|||++||+.+|+.|+.+|+.+...
T Consensus 30 Ge~Il~e~P~~--------~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~ 96 (490)
T 3n71_A 30 ADVIFAERAYS--------AVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKY 96 (490)
T ss_dssp TCEEEEECCSE--------EEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCce--------EEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHhc
Confidence 55566665543 334445677899999875 467899999999999999999999999999887543
No 84
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.58 E-value=4e-05 Score=65.90 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=47.6
Q ss_pred hhhccccCCCCcHHHHHHHhhCce-EEEeC--ceEEEEc-chhhHHHHHHHHHHhhcC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTR-IVIAD--SKIHVLG-SYQNVQVALKALSNLILG 187 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~-I~v~~--~~v~iiG-~~~~l~~ar~~i~~~~~~ 187 (766)
..+|-+||++|++++.|.+.||++ |.|.+ .+|.|.| +.+.++.|+..|+.+.+-
T Consensus 24 dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 24 DLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp HHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred HHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 448999999999999999999998 99983 8999999 788999999998776543
No 85
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.57 E-value=9.2e-05 Score=64.57 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=48.6
Q ss_pred hhhccccCCCCcHHHHHHHhh-CceEEEeC-c----eEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENIT-KTRIVIAD-S----KIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t-~~~I~v~~-~----~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
..++.|||++|++++.|++.| |++|.|.+ . +|.|.|+...+..|+..|..+..
T Consensus 26 ~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 26 KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 458999999999999999999 99999975 3 89999999999999999999875
No 86
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=97.56 E-value=8.1e-05 Score=61.64 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=56.6
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEccc---CeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKS---RNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~---~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||++.+|.|||+.|++++.|.+.+|++|.|+... +.|+|.+ ++.++.+|.++|..+.+
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999999998652 3688887 68999999999987653
No 87
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.56 E-value=0.00022 Score=62.19 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=56.6
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEccc----CeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKS----RNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~----~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
-+..+.||+..++.|||+.|++++.|++.++++|.|.... +.|.|.+ .+..+.+|+++|..+..
T Consensus 17 vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G-----~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 17 VSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTG-----LPENVEEAIDHILNLEE 84 (95)
T ss_dssp CCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEES-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEc-----CHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999997542 2799987 57899999999999853
No 88
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=97.56 E-value=2.4e-05 Score=79.42 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=39.7
Q ss_pred ccccccccccCCceeeee--cCccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCKPNTKHVIV--NEDFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~f~--~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||||.||+..... +...++.++|+|+|++||||+++|+..+|..
T Consensus 146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~ 196 (222)
T 3ope_A 146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNV 196 (222)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCC
T ss_pred cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCC
Confidence 456889999999875431 3334688999999999999999999988765
No 89
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.55 E-value=6.9e-05 Score=66.57 Aligned_cols=67 Identities=12% Similarity=0.023 Sum_probs=58.5
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEccc---CeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKS---RNVEIRLSPETEDISNLQKAADFVKAFVYGFD 101 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~---~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~ 101 (766)
-+..+.||++.++.|||++|++++.|++.+|++|.|+... +.|.|.+ .+..+.+|+++|..+...+.
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G-----~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITG-----LAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEE-----CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEc-----CHHHHHHHHHHHHHHHhhHH
Confidence 6788999999999999999999999999999999997542 3899998 45899999999999975443
No 90
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.52 E-value=0.00011 Score=70.71 Aligned_cols=56 Identities=18% Similarity=0.356 Sum_probs=50.1
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC---------ceEEEEcchhhHHHHHHHHHHhhcCCC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD---------SKIHVLGSYQNVQVALKALSNLILGSP 189 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~---------~~v~iiG~~~~l~~ar~~i~~~~~~~~ 189 (766)
...|+|||++|++++.|++.||++|.|.. +.|.|.|+.+++..|+.+|..++...+
T Consensus 11 ~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 11 GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERD 75 (164)
T ss_dssp TCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSS
T ss_pred hheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Confidence 45999999999999999999999999952 379999999999999999999987554
No 91
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=97.50 E-value=3.3e-05 Score=78.84 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=40.0
Q ss_pred ccccccccccCCceeee--ecCccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCKPNTKHVI--VNEDFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~f--~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||||.||+...+ .+...++.++|+|+|.+||||+++|+..+|..
T Consensus 165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~ 215 (232)
T 3ooi_A 165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGN 215 (232)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTTC
T ss_pred ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCCC
Confidence 56789999999986532 14445788999999999999999999887754
No 92
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.49 E-value=9.4e-05 Score=72.22 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=51.1
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc----------eEEEEcchhhHHHHHHHHHHhhcCCCC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS----------KIHVLGSYQNVQVALKALSNLILGSPP 190 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~----------~v~iiG~~~~l~~ar~~i~~~~~~~~p 190 (766)
..+|+|||++|++++.|+..||++|.|.+. .|.|.|+.+++..|+..|...+...++
T Consensus 15 ~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 15 YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 569999999999999999999999999742 589999999999999999999876544
No 93
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.48 E-value=8.4e-05 Score=71.25 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=48.2
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc-----eEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~-----~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
...|+|||++|++++.|++.||++|.|.+. .|.|.|+.+++..|+..|...+.
T Consensus 14 ~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 14 KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (160)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 559999999999999999999999999865 79999999999999998887663
No 94
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.45 E-value=9.3e-05 Score=72.02 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=50.2
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC-------ceEEEEcchhhHHHHHHHHHHhhcCCC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD-------SKIHVLGSYQNVQVALKALSNLILGSP 189 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~-------~~v~iiG~~~~l~~ar~~i~~~~~~~~ 189 (766)
..+|+|||++|++++.|++.|||+|.|.+ +.|.|.|+.+++..|+..|..+++...
T Consensus 12 ~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 12 FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred hheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 45999999999999999999999999974 369999999999999999999886543
No 95
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.44 E-value=0.00024 Score=62.17 Aligned_cols=64 Identities=17% Similarity=0.045 Sum_probs=57.1
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEccc------CeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKS------RNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~------~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||+..++.|||+.|++++.|.+.+|++|.|.... +.|.|.+ .+.++.+|+++|..+..
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G-----~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITG-----YEKNTEAARDAILRIVG 86 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEES-----CHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999997543 3788987 47899999999999863
No 96
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=97.37 E-value=6.4e-05 Score=79.23 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=40.2
Q ss_pred ccccccccccCCceeeee--cC-ccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCKPNTKHVIV--NE-DFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~f~--~~-~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||||.||+....+ +. ..++.++|+|+|++||||+++|+..||..
T Consensus 205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~ 256 (290)
T 3bo5_A 205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNL 256 (290)
T ss_dssp GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTTCC
T ss_pred chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccccc
Confidence 567899999999976421 32 13688999999999999999999999875
No 97
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=97.30 E-value=6.2e-05 Score=78.76 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=37.7
Q ss_pred ccccccccccCCcee--eeecCccchhhhhhhcccCCCeeeecccCCCCC
Q psy8224 559 KTAMLSHNCKPNTKH--VIVNEDFSLQLIALVNICKGDIISTTYTQPFWG 606 (766)
Q Consensus 559 ~~SllNHSC~PN~~~--~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~ 606 (766)
.+.++||||.||+.. .+++...++.++|+++|.+||||+++|+..+|+
T Consensus 190 ~aRFiNHSC~PN~~~~~~~v~g~~ri~~fA~RdI~~GEELT~dY~~~~~~ 239 (278)
T 3h6l_A 190 CSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYG 239 (278)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTTEEC
T ss_pred hhhhcccCCCCCceeEEEEeCCceEEEEEECCccCCCCEEEEecCCCcCC
Confidence 456889999999643 332344468899999999999999999987654
No 98
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.27 E-value=0.00019 Score=68.90 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=48.4
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeCc--------eEEEEcchhhHHHHHHHHHHhhcC
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIADS--------KIHVLGSYQNVQVALKALSNLILG 187 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~~--------~v~iiG~~~~l~~ar~~i~~~~~~ 187 (766)
...|.|||++|++++.|+..||++|.|.+. .|.|.|+.+++..|+..|...+..
T Consensus 12 ~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e 73 (163)
T 3krm_A 12 QAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKE 73 (163)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999763 499999999999999999887743
No 99
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=97.26 E-value=0.00014 Score=81.60 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=60.9
Q ss_pred CCHHHHHHHHhhhccccccccccC----CceeEEEeecccccccccccCCceeeeecCccchhhhhhhcccCCCeeeecc
Q psy8224 525 VSEETILRIAGILDTNAFDIRRSV----GKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTY 600 (766)
Q Consensus 525 ~s~~~i~~i~~~l~~Naf~i~~~~----~~~~~~gLyp~~SllNHSC~PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY 600 (766)
++.+.+....+.+..-+|.+.... .+..+.+|.|.+.|+||+|.||+...| ++ +.+.++|.++|++||||+++|
T Consensus 184 ~t~e~f~wA~~~v~SRsf~~~~~~~~~~~~~~~~~LvP~~D~~NH~~~~~~~~~~-~~-~~~~~~a~~~i~~Geei~~~Y 261 (449)
T 3qxy_A 184 RSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEY-SA-NCLRMVATQPIPKGHEIFNTY 261 (449)
T ss_dssp CCHHHHHHHHHHHHHHCBCCCCC-----CCCCCCBBCTTGGGCEECSSCSEEEEE-CS-SEEEEEESSCBCTTCEEEECC
T ss_pred CcHHHHHHHHHHHHHHhcccccCcccccccCCceeEeecHHHhcCCCCCCeEEEE-eC-CeEEEEECCCcCCCchhhccC
Confidence 566777777777777777664321 124567899999999999999999888 54 478999999999999999999
Q ss_pred cC
Q psy8224 601 TQ 602 (766)
Q Consensus 601 ~~ 602 (766)
|+
T Consensus 262 G~ 263 (449)
T 3qxy_A 262 GQ 263 (449)
T ss_dssp SS
T ss_pred CC
Confidence 97
No 100
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=97.24 E-value=9.9e-05 Score=76.54 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=36.5
Q ss_pred ccccccccccCCceeeee-cC--ccchhhhhhhcccCCCeeeecccCCCC
Q psy8224 559 KTAMLSHNCKPNTKHVIV-NE--DFSLQLIALVNICKGDIISTTYTQPFW 605 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~f~-~~--~~~l~~~A~r~I~~GeeI~~sY~~~~~ 605 (766)
.+.++||||.||+...+. ++ +..+.++|+|+|++||||+++|+..+-
T Consensus 186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~~ 235 (261)
T 2f69_A 186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHS 235 (261)
T ss_dssp CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSC
T ss_pred ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCccc
Confidence 357899999999987652 22 223478999999999999999997543
No 101
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=97.17 E-value=0.00011 Score=78.03 Aligned_cols=49 Identities=29% Similarity=0.466 Sum_probs=35.2
Q ss_pred ccccccccccCCceeeeecCc------cchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCKPNTKHVIVNED------FSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~f~~~~------~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||||.||+....+..+ .++.++|+|+|++||||+++|+..+|..
T Consensus 220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~ 274 (302)
T 1ml9_A 220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGL 274 (302)
T ss_dssp GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----
T ss_pred HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCcccc
Confidence 467899999999965431111 2578999999999999999999988764
No 102
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=97.09 E-value=0.00012 Score=77.52 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=35.3
Q ss_pred ccccccccccCCceeeee-cCc-cc-hhhhhhhcccCCCeeeecccCC
Q psy8224 559 KTAMLSHNCKPNTKHVIV-NED-FS-LQLIALVNICKGDIISTTYTQP 603 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~f~-~~~-~~-l~~~A~r~I~~GeeI~~sY~~~ 603 (766)
.+.++||||.||+...++ ++. .. +.++|+|+|++||||+++|+-.
T Consensus 240 ~ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~ 287 (293)
T 1h3i_A 240 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 287 (293)
T ss_dssp CGGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETT
T ss_pred ceeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCC
Confidence 356889999999987652 211 23 4789999999999999999854
No 103
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=97.06 E-value=0.00019 Score=75.87 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=38.1
Q ss_pred ccccccccccCCceee--eecC----ccchhhhhhhcccCCCeeeecccCCCCC
Q psy8224 559 KTAMLSHNCKPNTKHV--IVNE----DFSLQLIALVNICKGDIISTTYTQPFWG 606 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~--f~~~----~~~l~~~A~r~I~~GeeI~~sY~~~~~~ 606 (766)
.+.++||||.||+... +.+. ..++.++|+|+|++||||+++|+..+|.
T Consensus 213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~ 266 (299)
T 1mvh_A 213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDF 266 (299)
T ss_dssp GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSSS
T ss_pred hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCcccc
Confidence 5668999999999652 2121 1267899999999999999999998883
No 104
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=97.06 E-value=9.1e-05 Score=77.91 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=37.5
Q ss_pred ccccccccccCCcee--eeecCc----cchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCKPNTKH--VIVNED----FSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~PN~~~--~f~~~~----~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||||.||+.. .+.... .++.++|+|+|++||||+++|+..+|..
T Consensus 216 ~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~ 270 (287)
T 3hna_A 216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDI 270 (287)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHH
T ss_pred chheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCccccc
Confidence 456789999999863 231221 2678999999999999999999876643
No 105
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.01 E-value=0.00072 Score=58.89 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=55.4
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhc-CcEEEEEcccC----eEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHL-KLQVRFNLKSR----NVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~-~~~i~i~~~~~----~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
.+..+.||+..++.|||..|++++.|++.+ |++|.|.. .| .|.|.+ ....+.+|++.|+.+.
T Consensus 17 vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~-~g~~~~~V~I~G-----~~~~v~~A~~~I~~iv 83 (95)
T 2ctj_A 17 AEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV-EGSGSDTVVIRG-----PSSDVEKAKKQLLHLA 83 (95)
T ss_dssp CCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC-TTTTCCEEEEES-----CHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC-CCCCcceEEEEc-----CHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999 99999974 45 999998 3349999999999885
No 106
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.96 E-value=0.00057 Score=79.07 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=57.6
Q ss_pred CceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 29 VDMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 29 ~~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
+-+..+.||+++++.|||+.|++++.|++.+|++|.|+ ++|.|.|.. .|+.++.+|+++|++|.
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-d~G~V~I~~----~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-DEETFSVFA----PTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-SSSEEEEEE----SSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-CCcEEEEEe----CCHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999998 679999998 58899999999998774
No 107
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.88 E-value=0.0011 Score=58.56 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=48.1
Q ss_pred hhhccccCCCCcHHHHHHH-hhCceEEEe--CceEEEEcchhhHHHHHHHHHHhhc
Q psy8224 134 RAIGRLAGKGGRTKFTIEN-ITKTRIVIA--DSKIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~-~t~~~I~v~--~~~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
+..+.|||++|.+++.|+. .++++|.+. ++.|.|-|+.+.+..|+..|..+++
T Consensus 36 ~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 36 WLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp TTHHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999 589999998 6779999999999999999988874
No 108
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=96.85 E-value=0.00073 Score=64.11 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=36.8
Q ss_pred hhcccCCCCCC---CeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCCC
Q psy8224 623 KTAMLSHNCKP---NTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFW 669 (766)
Q Consensus 623 ~~s~~NHsC~P---N~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~~ 669 (766)
.+.++||+|.+ |+...-. ++++.++|+|+|++||||++-|++.++
T Consensus 97 WmR~Vn~A~~~~eqNl~a~q~--~~~I~~~a~rdI~pGeELlv~Yg~~y~ 144 (151)
T 3db5_A 97 WMMFVRKARNREEQNLVAYPH--DGKIFFCTSQDIPPENELLFYYSRDYA 144 (151)
T ss_dssp GGGGCEECSSTTTCCEEEEEE--TTEEEEEESSCBCTTCBCEEEECC---
T ss_pred ceeEEEecCCcccCceEEEEE--CCEEEEEEccccCCCCEEEEecCHHHH
Confidence 45689999965 9987653 789999999999999999999998875
No 109
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=96.70 E-value=0.00064 Score=71.88 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=36.7
Q ss_pred ccccccccccCCceee--eecC----ccchhhhhhhcccCCCeeeecccCCC
Q psy8224 559 KTAMLSHNCKPNTKHV--IVNE----DFSLQLIALVNICKGDIISTTYTQPF 604 (766)
Q Consensus 559 ~~SllNHSC~PN~~~~--f~~~----~~~l~~~A~r~I~~GeeI~~sY~~~~ 604 (766)
.+.++||||.||+... +++. ..++.++|+|+|++||||+++|+..+
T Consensus 215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~ 266 (300)
T 2r3a_A 215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKG 266 (300)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGSS
T ss_pred hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCCc
Confidence 5678999999999753 2121 13678999999999999999999864
No 110
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.66 E-value=0.0013 Score=66.07 Aligned_cols=58 Identities=31% Similarity=0.342 Sum_probs=52.3
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEe--CceEEEEcch-----hhHHHHHHHHHHhhcCCCCc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIA--DSKIHVLGSY-----QNVQVALKALSNLILGSPPN 191 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~--~~~v~iiG~~-----~~l~~ar~~i~~~~~~~~p~ 191 (766)
..+|-|||++|+|++.|++.||++|.|. +.+|.|-|+. +.+..|+.+|..+.+|.+|.
T Consensus 43 ~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e 107 (219)
T 2e3u_A 43 DRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPE 107 (219)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCcc
Confidence 5699999999999999999999999998 5679998874 89999999999999988773
No 111
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=96.57 E-value=0.0016 Score=62.92 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=36.6
Q ss_pred hhcccCCCCC---CCeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCCC
Q psy8224 623 KTAMLSHNCK---PNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFW 669 (766)
Q Consensus 623 ~~s~~NHsC~---PN~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~~ 669 (766)
.+-++||+|. +|+...-. ++++.++|+|+|++||||++-|++.+.
T Consensus 101 WmR~Vn~A~~~~eqNl~a~q~--~~~I~~~a~RdI~pGeELlvwYg~~y~ 148 (170)
T 3ep0_A 101 WMTYIKCARNEQEQNLEVVQI--GTSIFYKAIEMIPPDQELLVWYGNSHN 148 (170)
T ss_dssp GGGGCEECSSTTTCCEEEEEE--TTEEEEEESSCBCTTCBCEEEECC---
T ss_pred eeeeEEecCCcccCCeeeEEE--CCEEEEEECcCcCCCCEEEEeeCHHHH
Confidence 3467899997 89876653 689999999999999999999998764
No 112
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.54 E-value=0.006 Score=56.23 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=56.8
Q ss_pred ceEEEecCCC------cchhhhccCcccHHHHHHhcCcEEEEEcc---------------------cCeEEEEeCCCCCC
Q psy8224 30 DMRKVPVPNH------RYGPLKENWMKIFTPIVEHLKLQVRFNLK---------------------SRNVEIRLSPETED 82 (766)
Q Consensus 30 ~~~~i~iP~~------r~~~l~~~~~~i~~~i~~~~~~~i~i~~~---------------------~~~v~i~~~~~t~d 82 (766)
-+.+|.||.+ .+|.|+|..|.+.+.|++.+|++|.|.-+ .+.|.|.. .|
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a----~~ 82 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTA----NT 82 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEE----SS
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEE----CC
Confidence 3567888887 78899999999999999999999999752 56788877 57
Q ss_pred HHHHHHHHHHHHHHHcC
Q psy8224 83 ISNLQKAADFVKAFVYG 99 (766)
Q Consensus 83 ~~~~~ka~~~i~ai~~g 99 (766)
+..+.+|.++|+.|..-
T Consensus 83 ~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 83 MENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 89999999999998754
No 113
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.54 E-value=0.0062 Score=55.08 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=55.0
Q ss_pred ceEEEecCCC-------cchhhhccCcccHHHHHHhcCcEEEEEc---------------ccCeEEEEeCCCCCCHHHHH
Q psy8224 30 DMRKVPVPNH-------RYGPLKENWMKIFTPIVEHLKLQVRFNL---------------KSRNVEIRLSPETEDISNLQ 87 (766)
Q Consensus 30 ~~~~i~iP~~-------r~~~l~~~~~~i~~~i~~~~~~~i~i~~---------------~~~~v~i~~~~~t~d~~~~~ 87 (766)
-+.+|+||-+ .++.|+|..|++.+.|++.+|++|.|.- +.+.|.|.. .|+..+.
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a----~~~e~i~ 87 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISH----PKPEGLA 87 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEE----SSHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEe----CCHHHHH
Confidence 4566777654 7899999999999999999999999972 347888887 5889999
Q ss_pred HHHHHHHHHHc
Q psy8224 88 KAADFVKAFVY 98 (766)
Q Consensus 88 ka~~~i~ai~~ 98 (766)
+|+.+|+.|..
T Consensus 88 ~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 88 AAKKLCENLLQ 98 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 114
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=96.48 E-value=0.00097 Score=63.07 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=37.4
Q ss_pred cccccccccC---CceeeeecCccchhhhhhhcccCCCeeeecccCCCCC
Q psy8224 560 TAMLSHNCKP---NTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWG 606 (766)
Q Consensus 560 ~SllNHSC~P---N~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~ 606 (766)
+.++||||.| |+...- .+..+.++|.|+|.+|||++..|+...+.
T Consensus 100 ~RfINhSc~p~eqNl~~~~--~~~~I~~~A~RdI~~GEEL~~dY~~~~~~ 147 (149)
T 2qpw_A 100 LRYVNWACSGEEQNLFPLE--INRAIYYKTLKPIAPGEELLVWYNGEDNP 147 (149)
T ss_dssp GGGCEECBTTBTCCEEEEE--ETTEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred eeeeeccCChhhcCEEEEE--ECCEEEEEEccCCCCCCEEEEccCCccCC
Confidence 5689999999 887543 34578899999999999999999987553
No 115
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=96.43 E-value=0.0011 Score=74.09 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHhhhccccccccccCCceeEEEeecccccccccccCCce---eeee------cCccchhhhhhhcccCCC
Q psy8224 524 DVSEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTK---HVIV------NEDFSLQLIALVNICKGD 594 (766)
Q Consensus 524 ~~s~~~i~~i~~~l~~Naf~i~~~~~~~~~~gLyp~~SllNHSC~PN~~---~~f~------~~~~~l~~~A~r~I~~Ge 594 (766)
.++.+.+....+++...+|.... ....+|.|.+.|+||+|.||+. ..+. +.+..+.++|.++|++||
T Consensus 158 ~~t~~~f~wA~~~v~SRaf~~~~----~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Ge 233 (440)
T 2h21_A 158 PVTLDDFFWAFGILRSRAFSRLR----NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE 233 (440)
T ss_dssp CCCHHHHHHHHHHHHHHCBCCC-------CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTS
T ss_pred CCCHHHHHHHHHHhcccceeccC----CCceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCC
Confidence 35677788888888888886532 2346899999999999998752 1110 123468899999999999
Q ss_pred eeeecccC
Q psy8224 595 IISTTYTQ 602 (766)
Q Consensus 595 eI~~sY~~ 602 (766)
||+++||+
T Consensus 234 ei~~sYG~ 241 (440)
T 2h21_A 234 QVYIQYDL 241 (440)
T ss_dssp BCEECSCT
T ss_pred EEEEeCCC
Confidence 99999996
No 116
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=96.41 E-value=0.00024 Score=56.44 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=35.0
Q ss_pred ccccccCCCCCCCcccccCCCCCCCcccCCCCCcccCCCCCc-cccCccCC--CCCCcHhhhhhh
Q psy8224 385 PLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDCGW-PLCAPRCK--SLPSHQKECKLM 446 (766)
Q Consensus 385 P~~~~p~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~-~yCS~~C~--~~~~H~~EC~~l 446 (766)
|-+..|.......|..|... .+.+|.+|+. .|||.+|+ +|..|+.+|..+
T Consensus 3 ~~~~~~~~~~~~~C~~C~~~------------~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~ 55 (60)
T 2od1_A 3 PNSGSPNSDSSESCWNCGRK------------ASETCSGCNTARYCGSFCQHKDWEKHHHICGQT 55 (60)
T ss_dssp --------CCSSCCTTTSSC------------CCEECTTTSCCEESSHHHHHHHHHHHTTTSSCS
T ss_pred CcccCcCCCCCCccccCCCc------------ccccCCCCCCeeecCHHHHHHHHHHHhHHHccc
Confidence 33445555566899999873 2789999998 89999997 488899999754
No 117
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.34 E-value=0.011 Score=52.14 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=58.1
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhc-CcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHL-KLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~-~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+..+.||+.--+.|||+.|..++.|++++ ++.|.+...++.|+|++ ++..+.+|+..|.++..
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G-----~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEG-----PTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEEC-----CHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999975 99999987788999998 68999999999988764
No 118
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.23 E-value=0.0018 Score=74.92 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=43.9
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEe-CceEEEEcch-hhHHHHHHHHHHhh
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIA-DSKIHVLGSY-QNVQVALKALSNLI 185 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~-~~~v~iiG~~-~~l~~ar~~i~~~~ 185 (766)
..+|+|||+||++++.|++.||++|.|. +.+|.|.|+- +.++.|+++|..+.
T Consensus 576 ~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 576 SKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred hHhheeECCCChhHHHHHHHHCCEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999995 5789999975 57888888887654
No 119
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=96.23 E-value=0.00057 Score=54.19 Aligned_cols=42 Identities=26% Similarity=0.582 Sum_probs=34.5
Q ss_pred CCCCcccccCCCCCCCcccCCCCCcccCCCCCc-cccCccCC--CCCCcHhhhhhhh
Q psy8224 394 SVPLCLGCHRTLKPTSMEENEPLSFYKCSDCGW-PLCAPRCK--SLPSHQKECKLMK 447 (766)
Q Consensus 394 ~~~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~-~yCS~~C~--~~~~H~~EC~~l~ 447 (766)
....|..|... .+.+|.+|+. .|||.+|+ +|..|+.+|..+.
T Consensus 14 ~~~~C~~C~~~------------~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~ 58 (60)
T 2dj8_A 14 SSESCWNCGRK------------ASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS 58 (60)
T ss_dssp CSCCCSSSCSC------------CCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSS
T ss_pred CCcccccCCCC------------CcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhcc
Confidence 34789999872 2789999998 89999997 5888999997654
No 120
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=95.98 E-value=0.0014 Score=50.22 Aligned_cols=38 Identities=26% Similarity=0.739 Sum_probs=31.0
Q ss_pred CCCcccccCCCCCCCcccCCCCCcccCCCCCc-cccCccCC--CCCCcHhhhh
Q psy8224 395 VPLCLGCHRTLKPTSMEENEPLSFYKCSDCGW-PLCAPRCK--SLPSHQKECK 444 (766)
Q Consensus 395 ~~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~-~yCS~~C~--~~~~H~~EC~ 444 (766)
...|..|... .+.+|++|+. .|||.+|+ +|..|+.+|.
T Consensus 9 ~~~C~~C~~~------------~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~ 49 (52)
T 2jw6_A 9 EQSCVNCGRE------------AMSECTGCHKVNYCSTFCQRKDWKDHQHICG 49 (52)
T ss_dssp --CCSSSSSS------------CSEECTTTCSSEESSHHHHHHHTTTGGGTTT
T ss_pred CCcCCCCCCC------------CcCcCCCCCCEeecCHHHHHHHHHHHCHHHc
Confidence 4689999873 2789999998 89999998 4888999996
No 121
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=95.88 E-value=0.0045 Score=60.98 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=37.1
Q ss_pred hhcccCCCCC---CCeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCC
Q psy8224 623 KTAMLSHNCK---PNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPF 668 (766)
Q Consensus 623 ~~s~~NHsC~---PN~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~ 668 (766)
.+-++||+|. +|+...-. ++++.++|+|+|++||||++-|++.+
T Consensus 131 WmRfVn~A~~~~eqNl~a~q~--~~~I~y~a~RdI~pGeELlvwYg~~Y 177 (196)
T 3dal_A 131 WMRYVNPAHSPREQNLAACQN--GMNIYFYTIKPIPANQELLVWYCRDF 177 (196)
T ss_dssp GGGGCEECSSTTTCCEEEEEE--TTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred eEEeEEecCCcccCCcEEEEE--CCEEEEEECcccCCCCEEEEecCHHH
Confidence 3568899996 79877653 78999999999999999999999543
No 122
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=95.59 E-value=0.0014 Score=53.66 Aligned_cols=42 Identities=29% Similarity=0.631 Sum_probs=34.7
Q ss_pred CCCcccccCCCCCCCcccCCCCCcccCCCCCc-cccCccCC--CCCCcHhhhhhhhh
Q psy8224 395 VPLCLGCHRTLKPTSMEENEPLSFYKCSDCGW-PLCAPRCK--SLPSHQKECKLMKD 448 (766)
Q Consensus 395 ~~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~-~yCS~~C~--~~~~H~~EC~~l~~ 448 (766)
...|..|... .+.+|.+|+. .|||.+|| +|..|+.+|..+..
T Consensus 15 ~~~C~~C~~~------------~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~ 59 (70)
T 2d8q_A 15 RPRCAYCSAE------------ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ 59 (70)
T ss_dssp CCBCSSSCCB------------CCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred CCcCCCCCCc------------ccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence 4689999773 2689999998 89999998 58779999987654
No 123
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=95.38 E-value=0.0093 Score=56.45 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=37.5
Q ss_pred hcccCCCCC---CCeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCC
Q psy8224 624 TAMLSHNCK---PNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPF 668 (766)
Q Consensus 624 ~s~~NHsC~---PN~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~ 668 (766)
+.++||+|. +|+...- .++++.++|+|+|++|+||++-|.+.+
T Consensus 97 mr~vn~a~~~~eqNl~a~q--~~~~I~~~~~r~I~pGeELlv~Y~~~y 142 (152)
T 3ihx_A 97 MMFVRPAQNHLEQNLVAYQ--YGHHVYYTTIKNVEPKQELKVWYAASY 142 (152)
T ss_dssp GGGCCBCCSTTTCCEEEEE--CSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred eeeeeccCCccCCCcEEEE--eCCeEEEEEeeecCCCCEEEEechHHH
Confidence 568999998 7988765 478999999999999999999998654
No 124
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=95.36 E-value=0.012 Score=63.63 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=47.3
Q ss_pred hhhhhccccCCCC--cHHHHHHHhhCceEEEeCc------------eEEEEcchhhHHHHHHHHHHh
Q psy8224 132 LSRAIGRLAGKGG--RTKFTIENITKTRIVIADS------------KIHVLGSYQNVQVALKALSNL 184 (766)
Q Consensus 132 ~~r~~griiG~~G--~t~~~ie~~t~~~I~v~~~------------~v~iiG~~~~l~~ar~~i~~~ 184 (766)
...-.+.|||++| .+++.|..-|||+|.+.+. .|.|-|..++++.||..|..+
T Consensus 37 p~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 37 ESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp CGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred chhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 3455788999999 9999999999999999653 399999999999999999885
No 125
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.31 E-value=0.021 Score=53.52 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=52.6
Q ss_pred EEEecCCCcchhhhccCcccHHHHHHhcCc-EEEEEccc--------C--eEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 32 RKVPVPNHRYGPLKENWMKIFTPIVEHLKL-QVRFNLKS--------R--NVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 32 ~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~-~i~i~~~~--------~--~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
.+|.||++.++.+||+.|...+.+.+.+|+ +|.|.... + .|+|.+ ++.++.+|+.+|.....
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G-----~~~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVG-----TKDSIANATVLLDYHLN 141 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEE-----EHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999996 89886532 2 366776 88999999999987643
No 126
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=95.26 E-value=0.018 Score=52.47 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=45.3
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEe------CceEEEEcchhhHHHHHHHHHHhh
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIA------DSKIHVLGSYQNVQVALKALSNLI 185 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~------~~~v~iiG~~~~l~~ar~~i~~~~ 185 (766)
...|+|+|++|.-++.||.+|+|.|.|. ...|.|.|++.-=+.|+..|..+.
T Consensus 65 ~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA 122 (140)
T 3v69_A 65 RLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLA 122 (140)
T ss_dssp GGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999995 234999999998888888887765
No 127
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=94.92 E-value=0.021 Score=55.98 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=53.2
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC--ceEEEE-----cchhhHHHHHHHHHHhhcCCCCcc
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD--SKIHVL-----GSYQNVQVALKALSNLILGSPPNK 192 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~--~~v~ii-----G~~~~l~~ar~~i~~~~~~~~p~~ 192 (766)
.+.|-|||++|.+++.||+.+|++|.|.. +.|.|- |+...+..|+++|..+.+|-+|..
T Consensus 13 ~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~ 78 (191)
T 1tua_A 13 ERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEK 78 (191)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 66999999999999999999999999985 568888 888899999999999999988744
No 128
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=94.63 E-value=0.02 Score=57.77 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=37.4
Q ss_pred hhcccCCCCC---CCeEEEEEeCCeEEEEEEecccCCCCeEEeecCCCC
Q psy8224 623 KTAMLSHNCK---PNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPF 668 (766)
Q Consensus 623 ~~s~~NHsC~---PN~~~~~~~~g~~l~vra~r~I~~GeeI~isY~~~~ 668 (766)
.+.++||+|. +|+..... ++++.++|+|+|.+|+||++-|++.+
T Consensus 140 WmRfVn~Ar~~~EqNL~A~q~--~~~Iyy~a~RdI~pGeELlVwYg~~Y 186 (237)
T 3ray_A 140 WMRYVVISREEREQNLLAFQH--SERIYFRACRDIRPGEWLRVWYSEDY 186 (237)
T ss_dssp GGGGCEECCCTTTCCEEEEEE--TTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred ceeEEEcCCCcccccceeEEe--CCEEEEEEccccCCCCEEEEeeCHHH
Confidence 3468999996 68877653 78999999999999999999999654
No 129
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=94.11 E-value=0.01 Score=69.46 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=10.5
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEe-CceEEEEcc-hhhHHHHHHHHHHhhcCCCCcccccceee
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIA-DSKIHVLGS-YQNVQVALKALSNLILGSPPNKVYGGILC 199 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~-~~~v~iiG~-~~~l~~ar~~i~~~~~~~~p~~~~s~l~c 199 (766)
..+|.|||+||++++.|++-||+.|.|. +.+|.|.+. .+.++.|+..|..+..--..|.+|..-..
T Consensus 579 ~ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~ 646 (726)
T 4aid_A 579 DKIREVIGSGGKVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVV 646 (726)
T ss_dssp -----------------------------------CCSCHHHHHHHHHC-------------------
T ss_pred HHHHhhcCCCchhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEE
Confidence 4489999999999999999999999997 467888776 45788999999999987777776655444
No 130
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=94.05 E-value=0.016 Score=67.89 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=13.1
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVY 98 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~ 98 (766)
-...+.||+++++.+||..|++++.|.+.+|++|.|+ ++|.|.|.. .|..++.+|+++|++|..
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-ddG~v~I~~----~~~~~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-DDGVVKVSA----SDGAKIKAAIDWIKSITD 633 (726)
T ss_dssp C--------------------------------------------CC----SCHHHHHHHHHC------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-CCceEEEEe----CCHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999998 679999987 588999999999998864
No 131
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=93.92 E-value=0.12 Score=47.88 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=51.7
Q ss_pred eEEEecCCCc------chhhhccCcccHHHHHHhcCcEEEEEccc------------C-----------eEEEEeCCCCC
Q psy8224 31 MRKVPVPNHR------YGPLKENWMKIFTPIVEHLKLQVRFNLKS------------R-----------NVEIRLSPETE 81 (766)
Q Consensus 31 ~~~i~iP~~r------~~~l~~~~~~i~~~i~~~~~~~i~i~~~~------------~-----------~v~i~~~~~t~ 81 (766)
+.+|.||-+. +|.|+|..|.+.+.|++.+|++|.|.-+. | .|.|.. .
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa----~ 78 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITV----E 78 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEE----C
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEe----c
Confidence 4577888655 99999999999999999999999998532 1 666776 2
Q ss_pred CH-----HHHHHHHHHHHHHHcCC
Q psy8224 82 DI-----SNLQKAADFVKAFVYGF 100 (766)
Q Consensus 82 d~-----~~~~ka~~~i~ai~~gf 100 (766)
|+ ..+.+|.++|+.+..-+
T Consensus 79 ~~~~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 79 DAQNRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CchhhHHHHHHHHHHHHHHHCCCC
Confidence 33 37899999999886533
No 132
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=93.88 E-value=0.33 Score=44.30 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=65.3
Q ss_pred CCccccccCcccccc------------C-CCCCCccccCCCCceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEc
Q psy8224 1 MKTTKRSADAMEVDD------------A-KAQEPAVKKAKHVDMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNL 67 (766)
Q Consensus 1 ~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~ 67 (766)
|.++++-.+.+++++ . ++=|+|++-.+. .-+.+...-+++|+|..|+-++.|+..+++.|++|.
T Consensus 17 m~~~~~~~t~~~~~~~~~~~~~~~g~~~~PwW~~~e~L~dP---lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~ 93 (140)
T 3v69_A 17 MASLKRFQTLVPLDHKQGTLFEIIGEPKLPKWFHVECLEDP---KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNV 93 (140)
T ss_dssp -CCSCCCCCSSCEEEEETTEEEECSCCCCCTTCCGGGGSSC---EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEEC
T ss_pred cccccccchHHhhhhccCceeeccCCCCCCCccCHHHCCCC---eEEEEehhhhhcccCCCcCccchHHhhcceeEEEec
Confidence 445555556666553 2 334444433333 566789999999999999999999999999999985
Q ss_pred cc--CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 68 KS--RNVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 68 ~~--~~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
-+ |..+|.- .+.|.+-.+|+++|..++
T Consensus 94 ~~s~g~tEVtI---fG~~~~Q~rak~MI~sLA 122 (140)
T 3v69_A 94 WGPERRAEIWI---FGPPPFRRDVDRMLTDLA 122 (140)
T ss_dssp CCTTSCEEEEE---ESCHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEE---ECCHHHHHHHHHHHHHHH
Confidence 43 3444333 248999999999999876
No 133
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.51 E-value=0.16 Score=39.23 Aligned_cols=37 Identities=27% Similarity=0.583 Sum_probs=30.5
Q ss_pred ccCCCCcccccCCcccCCCCCCCCcccCCchhhccccc
Q psy8224 310 KKMDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWK 347 (766)
Q Consensus 310 ~~~~~~~C~~C~~~~~~~C~~C~~v~YCs~~cq~~~w~ 347 (766)
.+..+..|..|+..+..+|++|. +.|||-+|-+.|-.
T Consensus 8 ~~~~~~~C~vC~~~~kY~CPrC~-~~yCSl~C~k~Hk~ 44 (56)
T 2yqq_A 8 LKCSTVVCVICLEKPKYRCPACR-VPYCSVVCFRKHKE 44 (56)
T ss_dssp CCCCCCCCTTTCSCCSEECTTTC-CEESSHHHHHHHHH
T ss_pred cCCCCCccCcCcCCCeeeCCCCC-CCeeCHHHHHHHHh
Confidence 34556689999998889999997 88999999877644
No 134
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=87.33 E-value=0.2 Score=47.20 Aligned_cols=47 Identities=9% Similarity=-0.003 Sum_probs=34.6
Q ss_pred ccccccccccC---CceeeeecCccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCKP---NTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~P---N~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||+|.+ |+...- .+..+.++|.|+|.+|||+...|++.++..
T Consensus 97 WmR~Vn~A~~~~eqNl~a~q--~~~~I~~~a~rdI~pGeELlv~Yg~~y~~~ 146 (151)
T 3db5_A 97 WMMFVRKARNREEQNLVAYP--HDGKIFFCTSQDIPPENELLFYYSRDYAQQ 146 (151)
T ss_dssp GGGGCEECSSTTTCCEEEEE--ETTEEEEEESSCBCTTCBCEEEECC-----
T ss_pred ceeEEEecCCcccCceEEEE--ECCEEEEEEccccCCCCEEEEecCHHHHHH
Confidence 45788999965 776543 345788999999999999999999987643
No 135
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=86.64 E-value=0.57 Score=43.57 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhhHHhhc
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALALL 109 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~a~~ll 109 (766)
....+.|++..+|..+|.+|...+.|++.+|-+|+|= . -+.||. .||... ++|..-..+-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV--------~---~s~d~~------~fI~na---LsPA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV--------E---YSSDLE------RIVKNL---FPGVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE--------E---CCSSHH------HHHHHH---STTSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE--------E---cCCCHH------HHHHHh---cCCceEEEEE
Confidence 5577899999999999999999999999988777552 1 234653 344332 4554422221
Q ss_pred cc--ccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEe
Q psy8224 110 RL--DNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIA 161 (766)
Q Consensus 110 ~~--d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~ 161 (766)
-+ |+- ..-.+. - ..+.+++.|||+|++.+....+||.+|-|.
T Consensus 96 i~~~~~~-----~~~~V~-V----~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 96 VRERNGV-----KQVVIK-V----SEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEETTE-----EEEEEE-E----CTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EeecCCc-----EEEEEE-E----ChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 00 000 000011 1 124588999999999999999999988664
No 136
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=84.81 E-value=0.32 Score=46.73 Aligned_cols=47 Identities=13% Similarity=-0.051 Sum_probs=34.4
Q ss_pred cccccccccc---CCceeeeecCccchhhhhhhcccCCCeeeecccCCCCCc
Q psy8224 559 KTAMLSHNCK---PNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGT 607 (766)
Q Consensus 559 ~~SllNHSC~---PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~~ 607 (766)
.+.++||+|. +|+...- .+..+.++|.|+|.+|+|+...|++.++..
T Consensus 101 WmR~Vn~A~~~~eqNl~a~q--~~~~I~~~a~RdI~pGeELlvwYg~~y~~~ 150 (170)
T 3ep0_A 101 WMTYIKCARNEQEQNLEVVQ--IGTSIFYKAIEMIPPDQELLVWYGNSHNTF 150 (170)
T ss_dssp GGGGCEECSSTTTCCEEEEE--ETTEEEEEESSCBCTTCBCEEEECC-----
T ss_pred eeeeEEecCCcccCCeeeEE--ECCEEEEEECcCcCCCCEEEEeeCHHHHHH
Confidence 4467899996 7866543 345788999999999999999999976543
No 137
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=79.37 E-value=1.1 Score=42.17 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCChhh-HHhhc-ccccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEE-eC
Q psy8224 86 LQKAADFVKAFVYGFDVDD-ALALL-RLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVI-AD 162 (766)
Q Consensus 86 ~~ka~~~i~ai~~gf~~~~-a~~ll-~~d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v-~~ 162 (766)
+.++++|+.-|...+.++- ++... .+++.+ .|+|. ++ --|.||||.|+|..|||-++.-.+.= ++
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i--~i~i~------ge----d~glLIGK~G~TL~ALQyL~~~~vn~~~~ 71 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPGVL--LIDID------GE----DSALLIGEKGYRYKALSYLLFNWIHPTYG 71 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETTEE--EEEEE------EG----GGTTTTCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCCEE--EEEEe------cC----CcceEECCCCcchHHHHHHHHHHhhhcCC
Confidence 4578888888866554432 23331 222211 12222 22 26999999999999999998544432 23
Q ss_pred ceEEE-Ecchhh------HHHHHHHHHHhhcCCC
Q psy8224 163 SKIHV-LGSYQN------VQVALKALSNLILGSP 189 (766)
Q Consensus 163 ~~v~i-iG~~~~------l~~ar~~i~~~~~~~~ 189 (766)
..|.+ ++.|.. -+.|+++.....+-..
T Consensus 72 ~~V~LDve~YRerReetL~~lA~~~A~kV~~tgk 105 (152)
T 2pt7_G 72 YSIRLEISTFLQNQEKVMDTQLQSVIMTVHEVGK 105 (152)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ceEEEEhHHhHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44555 677753 2367777776654433
No 138
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=75.45 E-value=0.2 Score=59.05 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=22.3
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
-...+.||+++++.+||..|++++.|.+.+|+.|.|+. +|.|.|.. .|.....+|++.|+++.
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-dG~v~Is~----~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-DGTIYIGA----ADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC---------CCCB----SSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-CceEEEec----CCHHHHHHHHHHHHHhc
Confidence 34568899999999999999999999999999999995 79998875 46677788888887764
No 139
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=73.85 E-value=0.59 Score=45.86 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=36.3
Q ss_pred cccccccccc---CCceeeeecCccchhhhhhhcccCCCeeeecccCCCCC
Q psy8224 559 KTAMLSHNCK---PNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWG 606 (766)
Q Consensus 559 ~~SllNHSC~---PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~ 606 (766)
.+.++||+|. +|+...- .+..+.++|.|+|.+|||+...|++.++.
T Consensus 131 WmRfVn~A~~~~eqNl~a~q--~~~~I~y~a~RdI~pGeELlvwYg~~Y~~ 179 (196)
T 3dal_A 131 WMRYVNPAHSPREQNLAACQ--NGMNIYFYTIKPIPANQELLVWYCRDFAE 179 (196)
T ss_dssp GGGGCEECSSTTTCCEEEEE--ETTEEEEEESSCBCTTCBCEEEECHHHHH
T ss_pred eEEeEEecCCcccCCcEEEE--ECCEEEEEECcccCCCCEEEEecCHHHHH
Confidence 4567899996 6776543 34578899999999999999999986543
No 140
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=72.54 E-value=0.7 Score=35.94 Aligned_cols=30 Identities=37% Similarity=0.842 Sum_probs=25.4
Q ss_pred CcccccCC----cccCCCCCCCCcccCCchhhccc
Q psy8224 315 GKCEVCKV----AASLKCGGCNQVFYCSKSHQKQH 345 (766)
Q Consensus 315 ~~C~~C~~----~~~~~C~~C~~v~YCs~~cq~~~ 345 (766)
..|..|+. ++..+|++|. +.|||-.|.+.|
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~H 45 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRTH 45 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTC-CEESSHHHHHHH
T ss_pred CcCcCCCCCcCCCccccCcCCC-CCccChHHHHHH
Confidence 46999984 5788999997 889999999864
No 141
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=70.13 E-value=0.91 Score=53.31 Aligned_cols=63 Identities=8% Similarity=0.111 Sum_probs=0.0
Q ss_pred ceEEEecCCCcchhhhccCcccHHHHHHhcCcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy8224 30 DMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFV 97 (766)
Q Consensus 30 ~~~~i~iP~~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~ 97 (766)
-...+.||+++++.+||..|++++.|.+.+|+.|.|+. +|.|.|.. .|...+.+|++.|+.+.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-dg~v~I~~----~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAA----TDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-CccEEEec----CCHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999985 68888876 35567788888777653
No 142
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=65.57 E-value=1.3 Score=52.06 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=0.0
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC-ceEEEEcch-hhHHHHHHHHHHhhcCCCCcccccce
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD-SKIHVLGSY-QNVQVALKALSNLILGSPPNKVYGGI 197 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~-~~v~iiG~~-~~l~~ar~~i~~~~~~~~p~~~~s~l 197 (766)
..+|.+||++|+|++.|..-||+.|-|.+ .+|+|.+.- ..++.|++.|..+..-...|.+|..-
T Consensus 569 ~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~ 634 (723)
T 3cdi_A 569 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 634 (723)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHhcccccccceeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEE
Confidence 34789999999999999999999999975 557776653 46778888888877655666655443
No 143
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.85 E-value=2.2 Score=32.91 Aligned_cols=35 Identities=29% Similarity=0.860 Sum_probs=25.9
Q ss_pred CCcccccCCCCCCCcccCCCCCcccCCCCCccccCccCCCCCCcHhhhh
Q psy8224 396 PLCLGCHRTLKPTSMEENEPLSFYKCSDCGWPLCAPRCKSLPSHQKECK 444 (766)
Q Consensus 396 ~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~~yCS~~C~~~~~H~~EC~ 444 (766)
..|..|.. . ..+.||+|..+|||-.|. ..|+..|.
T Consensus 13 ~~C~vC~~-~-----------~kY~CPrC~~~yCSl~C~--k~Hk~~C~ 47 (56)
T 2yqq_A 13 VVCVICLE-K-----------PKYRCPACRVPYCSVVCF--RKHKEQCN 47 (56)
T ss_dssp CCCTTTCS-C-----------CSEECTTTCCEESSHHHH--HHHHHHCC
T ss_pred CccCcCcC-C-----------CeeeCCCCCCCeeCHHHH--HHHHhhCc
Confidence 46888876 2 268999999999999994 34554464
No 144
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=63.64 E-value=2.2 Score=42.69 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=39.7
Q ss_pred hccccCCCCcHHHHHHHhhCceEEEe-Cc--eEEE-Ecchhh------HHHHHHHHHHhhcCCC
Q psy8224 136 IGRLAGKGGRTKFTIENITKTRIVIA-DS--KIHV-LGSYQN------VQVALKALSNLILGSP 189 (766)
Q Consensus 136 ~griiG~~G~t~~~ie~~t~~~I~v~-~~--~v~i-iG~~~~------l~~ar~~i~~~~~~~~ 189 (766)
.|+|||++|+|..+||.++...+.-. +. .|.+ ++.|.. .++|+++.....+...
T Consensus 103 ~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~~tg~ 166 (225)
T 3gku_A 103 MGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRERRKETLETLAKNIAYKVKRTKR 166 (225)
T ss_dssp HHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 79999999999999999998766543 32 3555 677763 3378888888875443
No 145
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=58.28 E-value=3.5 Score=38.60 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=34.9
Q ss_pred cccccccccc---CCceeeeecCccchhhhhhhcccCCCeeeecccCCC
Q psy8224 559 KTAMLSHNCK---PNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPF 604 (766)
Q Consensus 559 ~~SllNHSC~---PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~ 604 (766)
.+.++||+|. +|+...- .+..+...|.++|.+|+|+...|++.+
T Consensus 96 Wmr~vn~a~~~~eqNl~a~q--~~~~I~~~~~r~I~pGeELlv~Y~~~y 142 (152)
T 3ihx_A 96 WMMFVRPAQNHLEQNLVAYQ--YGHHVYYTTIKNVEPKQELKVWYAASY 142 (152)
T ss_dssp GGGGCCBCCSTTTCCEEEEE--CSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred ceeeeeccCCccCCCcEEEE--eCCeEEEEEeeecCCCCEEEEechHHH
Confidence 3567899997 6776543 455788999999999999999998743
No 146
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=55.57 E-value=2.2 Score=42.96 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=36.3
Q ss_pred cccccccccc---CCceeeeecCccchhhhhhhcccCCCeeeecccCCCCC
Q psy8224 559 KTAMLSHNCK---PNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWG 606 (766)
Q Consensus 559 ~~SllNHSC~---PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~~~~ 606 (766)
.+.++||+|. +|....- .+..+..+|.++|.+|+|+...|++.+|.
T Consensus 140 WmRfVn~Ar~~~EqNL~A~q--~~~~Iyy~a~RdI~pGeELlVwYg~~Y~~ 188 (237)
T 3ray_A 140 WMRYVVISREEREQNLLAFQ--HSERIYFRACRDIRPGEWLRVWYSEDYMK 188 (237)
T ss_dssp GGGGCEECCCTTTCCEEEEE--ETTEEEEEESSCBCTTCBCEEEECHHHHH
T ss_pred ceeEEEcCCCcccccceeEE--eCCEEEEEEccccCCCCEEEEeeCHHHHH
Confidence 5578999996 5765543 34578899999999999999999986543
No 147
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=54.26 E-value=0.87 Score=53.73 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=17.6
Q ss_pred hhhccccCCCCcHHHHHHHhhCceEEEeC-ceEEEEcch-hhHHHHHHHHHHhh--cCCCCccccccee
Q psy8224 134 RAIGRLAGKGGRTKFTIENITKTRIVIAD-SKIHVLGSY-QNVQVALKALSNLI--LGSPPNKVYGGIL 198 (766)
Q Consensus 134 r~~griiG~~G~t~~~ie~~t~~~I~v~~-~~v~iiG~~-~~l~~ar~~i~~~~--~~~~p~~~~s~l~ 198 (766)
..+|.+||++|++++.|..-||+.|.|.+ .+|+|.+.- ..++.|++.|..+. .-...|.+|..-.
T Consensus 607 ~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V 675 (757)
T 1e3p_A 607 DKIGEVIGPKRQMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSV 675 (757)
T ss_dssp --------------CTTCCCCCSCC--------CCCBSSHHHHCC---------------------CBE
T ss_pred HHeehcccccceeeehhhHhhCCEEEecCCceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEE
Confidence 56899999999999999999999999985 456665443 34556777777776 3333355554433
No 148
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.86 E-value=6.4 Score=29.66 Aligned_cols=27 Identities=30% Similarity=0.724 Sum_probs=20.9
Q ss_pred cccceeecccCCceecCCCCCCCCCcccCCCCCc
Q psy8224 193 VYGGILCSRCRHHVISTNPLDNLAKWKCIMCSHT 226 (766)
Q Consensus 193 ~~s~l~c~~c~g~~l~~~pl~~~~~W~C~~C~~~ 226 (766)
.+....|++|... +| .+-|.|.+|+++
T Consensus 11 ~~~k~iCpkC~a~----~~---~gaw~CrKCG~~ 37 (51)
T 3j21_g 11 IFKKYVCLRCGAT----NP---WGAKKCRKCGYK 37 (51)
T ss_dssp SSSEEECTTTCCE----EC---TTCSSCSSSSSC
T ss_pred HhCCccCCCCCCc----CC---CCceecCCCCCc
Confidence 4667789999765 33 468999999987
No 149
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=51.47 E-value=12 Score=39.90 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=58.2
Q ss_pred CcchhhhccCcccHHHHHHhc-CcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhhHHhh--cccccce
Q psy8224 39 HRYGPLKENWMKIFTPIVEHL-KLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALAL--LRLDNLF 115 (766)
Q Consensus 39 ~r~~~l~~~~~~i~~~i~~~~-~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~a~~l--l~~d~~~ 115 (766)
+-+|+.+|..|...+.|.+.+ |=+ |.|.. -+.||.. ||. .-++|.....+ ++.|+-.
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gek---------IDIi~--~s~dp~~------fi~---nalsPA~V~~V~~~~~~~~~ 308 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEK---------IDIID--YDDDPAR------FVA---NALSPAKVVSVSVIDQTARA 308 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCE---------EEEEE--CCSSHHH------HHH---HHTTTSCCSEEEEEETTTTE
T ss_pred CCcccccCCcchHHHHHHHHhCCCe---------EEEEE--cCCCHHH------HHH---HhcCCcceeEEEEEcCCCcE
Confidence 457889999999999999888 444 44333 2346533 332 22455544333 2211111
Q ss_pred eeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeC
Q psy8224 116 IESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIAD 162 (766)
Q Consensus 116 ~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~ 162 (766)
. .+.-. ....++.|||+|++.+-.-.+||.+|-|..
T Consensus 309 a------~V~V~-----~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 309 A------RVVVP-----DFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp E------EEEEC-----GGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred E------EEEEC-----hHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 0 11111 145788999999999999999999998853
No 150
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=51.25 E-value=3.2 Score=32.27 Aligned_cols=38 Identities=29% Similarity=0.655 Sum_probs=26.0
Q ss_pred CCcccccCCCCCCCcccCCCCCcccCCCCCccccCccCCCCCCcHhhhh
Q psy8224 396 PLCLGCHRTLKPTSMEENEPLSFYKCSDCGWPLCAPRCKSLPSHQKECK 444 (766)
Q Consensus 396 ~~C~~C~~~~~~~~~~~~~~~~~~~C~~C~~~yCS~~C~~~~~H~~EC~ 444 (766)
..|..|...... ...+.||+|..+|||-.|.. .|+ +|.
T Consensus 12 ~~C~vC~~~~~~--------~akY~CPrC~~rYCSl~C~k--~Hk-~Cs 49 (59)
T 1x4s_A 12 GPCGFCPAGEVQ--------PARYTCPRCNAPYCSLRCYR--THG-TCA 49 (59)
T ss_dssp EEECSSCTTCCE--------EECEECTTTCCEESSHHHHH--HHC-CGG
T ss_pred CcCcCCCCCcCC--------CccccCcCCCCCccChHHHH--HHh-HhC
Confidence 478888742111 12689999999999999953 344 563
No 151
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=49.12 E-value=8.6 Score=29.73 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=26.3
Q ss_pred cccccceeecccCCceecCCCCCCCCCcccCCCCCcccH
Q psy8224 191 NKVYGGILCSRCRHHVISTNPLDNLAKWKCIMCSHTLTA 229 (766)
Q Consensus 191 ~~~~s~l~c~~c~g~~l~~~pl~~~~~W~C~~C~~~~~~ 229 (766)
+.....+.|+.|.+..+-.|+ ..++|.|..|+..+..
T Consensus 6 ~~ll~~~~Cp~C~~~~lv~D~--~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 6 LDALPRVTCPNHPDAILVEDY--RAGDMICPECGLVVGD 42 (58)
T ss_dssp CCCCSCCSBTTBSSSCCEECS--SSCCEECTTTCCEECC
T ss_pred hhccccccCcCCCCCceeEeC--CCCeEEeCCCCCEEec
Confidence 346667789999864344443 3578999999988753
No 152
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=46.75 E-value=53 Score=32.81 Aligned_cols=101 Identities=8% Similarity=0.043 Sum_probs=68.0
Q ss_pred CcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhhHHhhcccccceeeeeeeccccccccchhhhhhccc
Q psy8224 60 KLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRL 139 (766)
Q Consensus 60 ~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~a~~ll~~d~~~~~~~~i~~~~~~~~~~~~r~~gri 139 (766)
+..+..|..++.+.|+. .|..+.+.+++|+.+=.-.. ...++|.++.. +-..+......+
T Consensus 139 ~g~v~~d~~tN~Liv~g-----~~~~i~~i~~li~~lD~p~~------------~~~~vi~l~~a---~A~dl~~~L~~~ 198 (246)
T 4e9j_A 139 YGHLAAVPSANALIISD-----RSANIARIEDVIRQLDQKGS------------HDYSVINLRYG---WVMDAAEVLNNA 198 (246)
T ss_dssp TSEEEEEGGGTEEEEEE-----CHHHHHHHHHHHHHHHTCSC------------CCEEEEECSSS---CHHHHHHHHHHH
T ss_pred CceEEEcCCCCEEEEEc-----CHHHHHHHHHHHHHhccccc------------cceEEEEecCC---CHHHHHHHHHHH
Confidence 46889999999999987 88999999999999864321 12455555543 223343444444
Q ss_pred cCCCCcHHHHHHHhhCceEEEeCc--eEEEEcchhhHHHHHHHHHHhh
Q psy8224 140 AGKGGRTKFTIENITKTRIVIADS--KIHVLGSYQNVQVALKALSNLI 185 (766)
Q Consensus 140 iG~~G~t~~~ie~~t~~~I~v~~~--~v~iiG~~~~l~~ar~~i~~~~ 185 (766)
.|++|.. ...+..|+.++. ++-|.|+.+.++.++..|..+-
T Consensus 199 ~~~~~~~-----~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~LD 241 (246)
T 4e9j_A 199 MSRGQAK-----GAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLD 241 (246)
T ss_dssp HHHTCST-----TCTTCEEEEEGGGTEEEEESSHHHHHHHHHHHHHHT
T ss_pred hccCCCC-----CCCceEEEEeCCCCeEEEECCHHHHHHHHHHHHHhC
Confidence 4433211 123467777764 4888899999999999988764
No 153
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=39.82 E-value=9.5 Score=28.29 Aligned_cols=32 Identities=16% Similarity=0.447 Sum_probs=21.5
Q ss_pred ceeecccCCceecCCCCCCCCCcccCCCCCcccH
Q psy8224 196 GILCSRCRHHVISTNPLDNLAKWKCIMCSHTLTA 229 (766)
Q Consensus 196 ~l~c~~c~g~~l~~~pl~~~~~W~C~~C~~~~~~ 229 (766)
.+.|+.|++.-|-.|+. .+.+.|..|+..+..
T Consensus 5 ~~~CP~C~~~~l~~d~~--~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIYDPE--RGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEEETT--TTEEEESSSCCBCCC
T ss_pred cEeCcCCCCcceEEcCC--CCeEECcccCCcccc
Confidence 46788887644444443 467889988887654
No 154
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.97 E-value=27 Score=32.67 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCChhhHHhhcc
Q psy8224 85 NLQKAADFVKAFVYGFDVDDALALLR 110 (766)
Q Consensus 85 ~~~ka~~~i~ai~~gf~~~~a~~ll~ 110 (766)
+..|++.+.++| ||.++++|+..|+
T Consensus 28 S~kk~r~va~~I-rG~~v~~A~~~L~ 52 (155)
T 3j21_S 28 SPKLAVEVCREL-RGMMLNDALRYLD 52 (155)
T ss_dssp CHHHHHHHHHHH-TTCBHHHHHHHHH
T ss_pred CHHHHHHHHHHH-CCCcHHHHHHHHH
Confidence 567888888866 6888888888876
No 155
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=36.75 E-value=32 Score=34.71 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=56.4
Q ss_pred CcchhhhccCcccHHHHHHhcCcEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhhHHhh--ccccccee
Q psy8224 39 HRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALAL--LRLDNLFI 116 (766)
Q Consensus 39 ~r~~~l~~~~~~i~~~i~~~~~~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~a~~l--l~~d~~~~ 116 (766)
+-+|+-+|..|.-.+.|.+.+ ....|+|.. -+.||. .||. .-++|.+...+ .+.++-.
T Consensus 126 DpvGacIG~~G~rI~~i~~eL--------~gekIDIi~--~s~dp~------~fi~---nalsPA~V~~V~i~~~~~~~- 185 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSEL--------SGEKIDIID--YDDDPA------RFVA---NALSPAKVVSVSVIDQTARA- 185 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHT--------TTCEEEEEE--CCSSHH------HHHH---HHTTTSCCSEEEEEETTTTE-
T ss_pred CHHHHHhCCCchHHHHHHHHh--------CCCeEEEEE--ecCCHH------HHHH---hccCCcceEEEEEEcCCCcE-
Confidence 457889999999999885433 234555443 134553 3332 23455544333 2212210
Q ss_pred eeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEe
Q psy8224 117 ESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIA 161 (766)
Q Consensus 117 ~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~ 161 (766)
..+.-.. ..++.-|||+|++.+---.|||-+|-|.
T Consensus 186 -----a~V~V~~-----~qlslAIGk~GqNvrLA~~Ltg~~idI~ 220 (251)
T 2asb_A 186 -----ARVVVPD-----FQLSLAIGKEGQNARLAARLTGWRIDIR 220 (251)
T ss_dssp -----EEEEECG-----GGHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred -----EEEEECh-----HHhhhhhcCCcCcHHHHHHHHCCEecce
Confidence 1111111 4478899999999999999999999885
No 156
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=34.43 E-value=26 Score=30.49 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=13.7
Q ss_pred eEEEEEEecccCCCCeEEe
Q psy8224 644 FSLQLIALVNIRKGDIIST 662 (766)
Q Consensus 644 ~~l~vra~r~I~~GeeI~i 662 (766)
+...=+|++||++||-+..
T Consensus 80 G~~IG~At~dI~~GehVH~ 98 (105)
T 3k3s_A 80 GLPIGYALADIAAGEHVHA 98 (105)
T ss_dssp TEEEEEESSCBCTTCEEST
T ss_pred CceeEEEccccCCCCeEEe
Confidence 4556678888888886643
No 157
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=33.32 E-value=30 Score=33.18 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHhhcc
Q psy8224 84 SNLQKAADFVKAFVYGFDVDDALALLR 110 (766)
Q Consensus 84 ~~~~ka~~~i~ai~~gf~~~~a~~ll~ 110 (766)
.+..|++.++.+| ||.++++|+++|+
T Consensus 26 vS~kk~reva~~I-RG~~v~~A~~~L~ 51 (183)
T 4a17_Q 26 VHFKNTYEVVRAI-KGLNLENAKRYLK 51 (183)
T ss_dssp SCHHHHHHHHHHH-TTSBHHHHHHHHH
T ss_pred CchHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 3567888888766 7888888888776
No 158
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=29.74 E-value=44 Score=31.18 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHhhcc
Q psy8224 84 SNLQKAADFVKAFVYGFDVDDALALLR 110 (766)
Q Consensus 84 ~~~~ka~~~i~ai~~gf~~~~a~~ll~ 110 (766)
.+..|++.+.++| ||.++++|+..|+
T Consensus 24 vS~kk~r~va~~I-rG~~v~~A~~~L~ 49 (155)
T 1vq8_R 24 MSFKHSKAIAREI-KGKTAGEAVDYLE 49 (155)
T ss_dssp SCHHHHHHHHHHH-TTSBHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 3567888888876 7999999998887
No 159
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=29.33 E-value=14 Score=41.30 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHhhhccccccccccCCceeEEEeecccccccccccCCceeeeecCccchhhhhhhcccCCCeeeecccCC
Q psy8224 524 DVSEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQP 603 (766)
Q Consensus 524 ~~s~~~i~~i~~~l~~Naf~i~~~~~~~~~~gLyp~~SllNHSC~PN~~~~f~~~~~~l~~~A~r~I~~GeeI~~sY~~~ 603 (766)
.++.+.+....+++..++|.+....+.....+|+|.+.|+||+|.|++.... ..++.+.++|.++|++||||+++||+.
T Consensus 237 ~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~-~~~~~~~~~a~~~i~~Geei~isYG~~ 315 (497)
T 3smt_A 237 SFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYN-LEDDRCECVALQDFRAGEQIYIFYGTR 315 (497)
T ss_dssp CCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEE-TTTTEEEEEESSCBCTTCEEEECCCSC
T ss_pred ccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeee-ccCCeEEEEeCCccCCCCEEEEeCCCC
Confidence 3678888888899999999886554445577999999999999999765544 345578899999999999999999973
Q ss_pred CCCccccccccccchhhhh
Q psy8224 604 FWGTMDRRLHLRMSKWIYM 622 (766)
Q Consensus 604 ~~~~~~r~~~~~i~~glyp 622 (766)
.-..+...+||.+
T Consensus 316 ------~n~~Ll~~YGFv~ 328 (497)
T 3smt_A 316 ------SNAEFVIHSGFFF 328 (497)
T ss_dssp ------CHHHHHHHHSCCC
T ss_pred ------ChHHHHHHCCCCC
Confidence 1234455555554
No 160
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=29.20 E-value=1.4e+02 Score=29.41 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=64.1
Q ss_pred cEEEEEcccCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChhhHHhhcccccceeeeeeeccccccccchhhhhhcccc
Q psy8224 61 LQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRLA 140 (766)
Q Consensus 61 ~~i~i~~~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~gf~~~~a~~ll~~d~~~~~~~~i~~~~~~~~~~~~r~~grii 140 (766)
-.+..|..++.+.|++ .|..+.+++++|+.+-.- .+...++|.++.. +-..+......+.
T Consensus 136 g~v~~d~~~N~Liv~g-----~~~~i~~i~~li~~lD~~------------~~~~~~v~~L~~a---~A~dla~~L~~~~ 195 (241)
T 3ezj_A 136 GNVVNYDPSNVIMLTG-----RASVVERLTEVIQRVDHA------------GNRTEEVIPLDNA---SASEIARVLESLT 195 (241)
T ss_dssp SCEEEEETTTEEEEEE-----EHHHHHHHHHHHHHHHHH------------TTCEEEEEECSSS---CHHHHHHHHHTTC
T ss_pred ceEEEcCCccEEEEEC-----CHHHHHHHHHHHHHhCcC------------CCCceEEEEEecC---CHHHHHHHHHHHh
Confidence 4788898999999987 789999999999988541 1123555656543 2234555566666
Q ss_pred CCCCcHHHHHHHhhCceEEEeCce--EEEEcchhhHHHHHHHHHHh
Q psy8224 141 GKGGRTKFTIENITKTRIVIADSK--IHVLGSYQNVQVALKALSNL 184 (766)
Q Consensus 141 G~~G~t~~~ie~~t~~~I~v~~~~--v~iiG~~~~l~~ar~~i~~~ 184 (766)
|.+|... -...+..|+.++.| +-|.|+.+.++.++..|..+
T Consensus 196 ~~~~~~~---~~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~L 238 (241)
T 3ezj_A 196 KNSGENQ---PATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRL 238 (241)
T ss_dssp ----------------CEEEETTTTEEEEEECHHHHHHHHHHHHHT
T ss_pred cccccCC---CCCCceEEEEcCCcCeEEEECCHHHHHHHHHHHHHh
Confidence 5543210 01234578888755 77789999999999988775
No 161
>3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.92A {Escherichia coli}
Probab=27.80 E-value=34 Score=29.47 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=12.8
Q ss_pred eEEEEEEecccCCCCeEEe
Q psy8224 644 FSLQLIALVNIRKGDIIST 662 (766)
Q Consensus 644 ~~l~vra~r~I~~GeeI~i 662 (766)
+...=+|+++|++||-+..
T Consensus 73 G~~IG~A~~dI~~Ge~VH~ 91 (99)
T 3laz_A 73 GEVIGYAVRAIPRGSWIDE 91 (99)
T ss_dssp TEEEEEESSCBCTTCBCCG
T ss_pred CcChhhccccCCCCCeEEe
Confidence 4555677788888876543
No 162
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.66 E-value=12 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.583 Sum_probs=21.1
Q ss_pred ceeecccCCceecCCCCCCCCCcccCCCCCcccH
Q psy8224 196 GILCSRCRHHVISTNPLDNLAKWKCIMCSHTLTA 229 (766)
Q Consensus 196 ~l~c~~c~g~~l~~~pl~~~~~W~C~~C~~~~~~ 229 (766)
.-.|+.|.+..+ .+|. .+.|.|..|++++.+
T Consensus 27 ~y~Cp~CG~~~v-~r~a--tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACPNCGEDRV-DRQG--TGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECSSSCCEEE-EEEE--TTEEEETTTCCEEEC
T ss_pred cCcCCCCCCcce-eccC--CCeEECCCCCCEecC
Confidence 448999975432 2333 468999999998443
No 163
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=25.78 E-value=90 Score=31.10 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=69.9
Q ss_pred cccHHHHHHhcCcEEEEEc-ccCeEEEEeCCCCCCHHHHHHHHHHHHHHHc--CCChhh---HHhhcc------------
Q psy8224 49 MKIFTPIVEHLKLQVRFNL-KSRNVEIRLSPETEDISNLQKAADFVKAFVY--GFDVDD---ALALLR------------ 110 (766)
Q Consensus 49 ~~i~~~i~~~~~~~i~i~~-~~~~v~i~~~~~t~d~~~~~ka~~~i~ai~~--gf~~~~---a~~ll~------------ 110 (766)
.++.+.|-+.+|..+-+|. -+|+|+++. .+|..-..+.+++..+.+ ||.... .+.+..
T Consensus 32 ~~vl~~la~~~g~nivvdp~V~G~VTl~~----~~pv~~~~~~~~l~~vL~~~gl~~~~~g~v~~V~p~~~~~~~~~~~~ 107 (246)
T 4e9j_A 32 REFIDQISEITGETFVVDPRVKGQVSVVS----KAQLSLSEVYQLFLSVMSTHGFTVVAQGDQARIVPNAEAKTEAGGGQ 107 (246)
T ss_dssp HHHHHHHHHHHCCCEEECTTCCCEEEEEE----EEEEEHHHHHHHHHHHHHHTTEEEEECSSSEEEEECC----------
T ss_pred HHHHHHHHHHhCCeEEECCCCceEEEEEe----CCCCCHHHHHHHHHHHHHHCCCEEEEeCCEEEEeehhhhhccccccc
Confidence 3467788899999999986 479999986 344445556566665543 543211 000000
Q ss_pred --cccceeeeeeeccccccccchhhhhhccccCCCCcHHHHHHHhhCceEEEeC--ceEEEEcchhhHHHHHHHHHHhhc
Q psy8224 111 --LDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIAD--SKIHVLGSYQNVQVALKALSNLIL 186 (766)
Q Consensus 111 --~d~~~~~~~~i~~~~~~~~~~~~r~~griiG~~G~t~~~ie~~t~~~I~v~~--~~v~iiG~~~~l~~ar~~i~~~~~ 186 (766)
.+++...+|.+.... -..+.+....++.+ +..|.+++ +++.|-|+...++.+++.|..+-.
T Consensus 108 ~~~~~~~t~vi~L~~~~---a~~l~~~L~~lls~------------~g~v~~d~~tN~Liv~g~~~~i~~i~~li~~lD~ 172 (246)
T 4e9j_A 108 SAPDRLETRVIQVQQSP---VSELIPLIRPLVPQ------------YGHLAAVPSANALIISDRSANIARIEDVIRQLDQ 172 (246)
T ss_dssp -CCSCCEEEEEECSSSC---HHHHHHHHGGGSCT------------TSEEEEEGGGTEEEEEECHHHHHHHHHHHHHHHT
T ss_pred cCCCccEEEEEEecCCC---HHHHHHHHHHhcCC------------CceEEEcCCCCEEEEEcCHHHHHHHHHHHHHhcc
Confidence 012222333333221 11222222233322 35677775 568899999999999999999875
Q ss_pred CC
Q psy8224 187 GS 188 (766)
Q Consensus 187 ~~ 188 (766)
..
T Consensus 173 p~ 174 (246)
T 4e9j_A 173 KG 174 (246)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 164
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=24.55 E-value=73 Score=30.22 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=23.1
Q ss_pred cccceeecccCCceecCCCCCCCCCcccCCCCCc
Q psy8224 193 VYGGILCSRCRHHVISTNPLDNLAKWKCIMCSHT 226 (766)
Q Consensus 193 ~~s~l~c~~c~g~~l~~~pl~~~~~W~C~~C~~~ 226 (766)
.+-+.-|+.|..+++.. .++.|.|.+|+..
T Consensus 39 ~~~Y~ACp~CnKKV~~~----~~g~~~CekC~~~ 68 (172)
T 3u50_C 39 KLYYYRCTCQGKSVLKY----HGDSFFCESCQQF 68 (172)
T ss_dssp CCEEEECTTSCCCEEEE----TTTEEEETTTTEE
T ss_pred cEEehhchhhCCEeeeC----CCCeEECCCCCCC
Confidence 45677899998887742 2468999999986
No 165
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=23.72 E-value=63 Score=27.12 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcccCCChhhHHHHHHHHhccccccCC
Q psy8224 233 AMGNDSIKSELAGLDKTEPTGLEMFLDKFQAQDSVLHD 270 (766)
Q Consensus 233 ~~~~~~~~~e~~~~~~~~~~~~e~~l~k~~~~~~~l~p 270 (766)
.+.++.+.+-++-++.++.+.++.|+.+|+.++.+.+.
T Consensus 25 dkF~dSf~el~dv~~~~~~Del~dFIsryARTDEImPE 62 (111)
T 2jmk_A 25 DRFLESFSELYDIIDENDTDVMMDFISRFARTDEIMPE 62 (111)
T ss_dssp GGHHHHHHHHHHHTTSCCSSHHHHHHHHHCCCSCCCSS
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHhhcccccCCC
Confidence 45667777777778778888899999999977655444
No 166
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=22.21 E-value=63 Score=30.64 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHcCCChhhHHhhcc
Q psy8224 85 NLQKAADFVKAFVYGFDVDDALALLR 110 (766)
Q Consensus 85 ~~~ka~~~i~ai~~gf~~~~a~~ll~ 110 (766)
+..|++.+.++| ||.++++|+..|+
T Consensus 25 S~kk~r~va~~I-rG~~v~~A~~~L~ 49 (171)
T 3iz5_V 25 HFKNTRETAFAI-RKLPLGKAKRYLE 49 (171)
T ss_dssp CHHHHHHHHHHS-CSCCSHHHHHHHH
T ss_pred CHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 456677776655 6777777777765
No 167
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.06 E-value=18 Score=28.03 Aligned_cols=36 Identities=28% Similarity=0.595 Sum_probs=26.1
Q ss_pred cccccceeecc--cCCceecCCCCCC-CCCcccCCCCCc
Q psy8224 191 NKVYGGILCSR--CRHHVISTNPLDN-LAKWKCIMCSHT 226 (766)
Q Consensus 191 ~~~~s~l~c~~--c~g~~l~~~pl~~-~~~W~C~~C~~~ 226 (766)
|.-|.-++|.+ |++.+=|--..+. ...|.|.-|...
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence 44577899988 9887655554444 347999999865
No 168
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=22.01 E-value=49 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.589 Sum_probs=20.9
Q ss_pred ceeecc--cCCceecCCCCCCCCCcccCCCCCcc
Q psy8224 196 GILCSR--CRHHVISTNPLDNLAKWKCIMCSHTL 227 (766)
Q Consensus 196 ~l~c~~--c~g~~l~~~pl~~~~~W~C~~C~~~~ 227 (766)
+--|+. |..++... .++.|.|.+|+...
T Consensus 43 Y~aC~~~~CnKKv~~~----~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQ----QNGLYRCEKCDTEF 72 (181)
T ss_dssp EEBCCSTTCCCBCEEE----TTTEEEETTTTEEE
T ss_pred ECCCCchhcCCccccC----CCCeEECCCCCCcC
Confidence 677888 98776642 24579999999764
No 169
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=20.89 E-value=86 Score=29.87 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.1
Q ss_pred ceEEEeC--ceEEEEcchhhHHHHHHHHHHh
Q psy8224 156 TRIVIAD--SKIHVLGSYQNVQVALKALSNL 184 (766)
Q Consensus 156 ~~I~v~~--~~v~iiG~~~~l~~ar~~i~~~ 184 (766)
-.|.+++ +++-|-|+.++++..++.|..+
T Consensus 148 g~v~~d~~tN~Liv~d~~~~i~~i~~lI~~l 178 (181)
T 3oss_D 148 GNVVNYDPSNVIMLTGRASVVERLTEVIQRV 178 (181)
T ss_dssp TCEEEEETTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 4688876 6688999999999999988765
No 170
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.84 E-value=36 Score=22.96 Aligned_cols=12 Identities=33% Similarity=1.066 Sum_probs=9.6
Q ss_pred CCCcccCCCCCc
Q psy8224 215 LAKWKCIMCSHT 226 (766)
Q Consensus 215 ~~~W~C~~C~~~ 226 (766)
.+||.|..|+..
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 468999999865
No 171
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.65 E-value=48 Score=26.75 Aligned_cols=30 Identities=23% Similarity=0.630 Sum_probs=19.2
Q ss_pred ceeecccCCceecCCCCCCCCCcccCCCCCccc
Q psy8224 196 GILCSRCRHHVISTNPLDNLAKWKCIMCSHTLT 228 (766)
Q Consensus 196 ~l~c~~c~g~~l~~~pl~~~~~W~C~~C~~~~~ 228 (766)
.-.|+.|...-+-. ...+-|+|.+|++++-
T Consensus 26 ky~C~fCgk~~vkR---~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 26 RYDCSFCGKKTVKR---GAAGIWTCSCCKKTVA 55 (72)
T ss_dssp CBCCSSCCSSCBSB---CSSSCBCCSSSCCCCC
T ss_pred CccCCCCCCceeEe---cCCCeEECCCCCCEEe
Confidence 34578886432222 2257899999998864
Done!