RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8224
(766 letters)
>1tua_A Hypothetical protein APE0754; structural genomics, protein
structure initiative, MCSG, four layers alpha-beta
sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1
d.51.1.1
Length = 191
Score = 171 bits (434), Expect = 2e-49
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
Query: 32 RKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAAD 91
V V R G + ++ I+ + + ++ V + E NL KAA+
Sbjct: 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAE 65
Query: 92 FVKAFVYGFDVDDALALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIE 151
VKA GF + A LL D + ++K V +HL R GR+ G+GGR + TIE
Sbjct: 66 VVKAISLGFPPEKAFRLLEEDQIL-VVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIE 124
Query: 152 NITKTRIVIADSKIHVLGSYQNVQVALKALSNLILGSPPNKVYGGIL 198
+T T I + + ++ ++G Y+ A +A+ L G + VY +
Sbjct: 125 EMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLE 171
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing
factor, RNA binding protein; 2.30A {Pyrococcus
horikoshii} PDB: 3aev_B
Length = 219
Score = 169 bits (430), Expect = 1e-48
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 2/191 (1%)
Query: 6 RSADAMEVDDAKAQEPAVKKAKHVDMRKVPVPNHRYGPLKENWMKIFTPIVEHLKLQVRF 65
+ + + D ++ + V +P R L + I + K ++
Sbjct: 10 KKFENVNKDGEIVEDEDEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITI 69
Query: 66 NLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALALLRLDNLFIESFEIKDVK 125
+ ++ V I + ETED + KA D V A GF + A LL + ++E + D+
Sbjct: 70 DSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLN-EGEYLEIINLTDII 128
Query: 126 TLK-GDHLSRAIGRLAGKGGRTKFTIENITKTRIVIADSKIHVLGSYQNVQVALKALSNL 184
+ L R GR+ G+ GRT+ IE ++ + + + ++G+ +++A A+ L
Sbjct: 129 IGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKL 188
Query: 185 ILGSPPNKVYG 195
GSP VY
Sbjct: 189 ARGSPHGSVYR 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 157 bits (396), Expect = 3e-41
Identities = 62/391 (15%), Positives = 121/391 (30%), Gaps = 78/391 (19%)
Query: 352 GCAKYKVVRNDILGRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSME 411
+V ++ GR + ATK+ ++I E+ + + CH K
Sbjct: 5 SMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSL--INFVCHTCFKRQE-- 60
Query: 412 ENEPLSFYKCSDCGWP-LCAPRCKSL--PSHQKECKLMKDNQYKSTIQFENETKKESAYC 468
++C C + C C+ +H+ EC +K
Sbjct: 61 -----KLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIR--------LA 107
Query: 469 CIAPLRSPLRCLLLERPLLDELLTLDAHLNERINTKLYEIYRVNLVRFIKDVLH--MDVS 526
R L L + L H+ + E RV++ F++ S
Sbjct: 108 ARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKE-LRVDVDTFLQYWPPQSQQFS 166
Query: 527 EETILRIAGILDTNAFDIRRSVGKIKI-RGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLI 585
+ I I G+++ N F + G + GI+ +++H+C PN +
Sbjct: 167 MQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIF---------- 216
Query: 586 ALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWIYMKTAMLSHNCKPNTKHVIVNEDFS 645
+N + +
Sbjct: 217 -------------------------------------------NNGNHEAVKSMFHTQMR 233
Query: 646 LQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTCDRCKDPTELETYLGKSF 705
++L AL I +G+ ++ +Y + +RR L+ FDC+C+ C+ + + +L
Sbjct: 234 IELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKE 293
Query: 706 CLV-YCEIRSLASLVSLDNCEEAMRYLAEST 735
E+ S D E+ + +E
Sbjct: 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGL 324
Score = 40.3 bits (93), Expect = 0.002
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 308 VDKKMDSGKCEVC--KVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYK 357
V + + C C + +CG C YC ++ QK W HK CA K
Sbjct: 43 VFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIK 94
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 134 bits (338), Expect = 5e-34
Identities = 50/275 (18%), Positives = 96/275 (34%), Gaps = 27/275 (9%)
Query: 353 CAKYKVVRNDILGRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEE 412
K + G + A +R GE++ PL S + C R L
Sbjct: 4 PLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVV--CDRCLLGKE--- 58
Query: 413 NEPLSFYKCSDCG-WPLCAPRCKSL--PSHQKECKLMKDNQYKSTIQFENETKKESAYCC 469
+CS C C+ +C+ P H++ECK +K + + +S
Sbjct: 59 ----KLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYP--------PDSVRLL 106
Query: 470 IAPLRSPLRCLLLERPLLDELLTLDAHLNERINT--KLYEIYRVNLVRFIKDVL---HMD 524
+ + E L L++++N+ + + F+++ +
Sbjct: 107 GRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQL 166
Query: 525 VSEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQL 584
+ + N+F I + + G+Y ++L+H+C PN V L L
Sbjct: 167 PPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGP--HLLL 224
Query: 585 IALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKW 619
A+ +I G+ ++ Y + +RR LR
Sbjct: 225 RAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYC 259
Score = 36.0 bits (82), Expect = 0.042
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 321 KVAASLKCGGCNQVFYCSKSHQKQHWKEHK 350
++C C YCS QK+ W +HK
Sbjct: 56 GKEKLMRCSQCRVAKYCSAKCQKKAWPDHK 85
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 128 bits (321), Expect = 8e-32
Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 25/268 (9%)
Query: 358 VVRNDILGRHMVATKDIREGEIILEEKPLVVGPKTASVPL-CLGCHRTLKPTSMEENEPL 416
+ GR + A + G+++ C C +
Sbjct: 11 RFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKE---------- 60
Query: 417 SFYKCSDCGWPL-CAPRCKSL--PSHQKECKLMKDNQYKSTIQFENETKKESAYCCIAPL 473
KC C C C+ P H+ EC M + +
Sbjct: 61 GLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVV------LGENWNPSETVRLTARILA 114
Query: 474 RSPLRCLLLERPLLDELLTLDAHLNERINTKLYEIYR--VNLVRFIKDVLHMDVSEETIL 531
+ + L + ++HL++ N K I L +F L +++
Sbjct: 115 KQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFP-DHSSLV 173
Query: 532 RIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIC 591
+ ++ N F I I+ A+++H+C PN + ++ A+ I
Sbjct: 174 VLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTY--KGTLAEVRAVQEIH 231
Query: 592 KGDIISTTYTQPFWGTMDRRLHLRMSKW 619
GD + T+Y + T DR LR S +
Sbjct: 232 PGDEVFTSYIDLLYPTEDRNDRLRDSYF 259
Score = 93.8 bits (232), Expect = 2e-20
Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 2/136 (1%)
Query: 620 IYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLR 679
I+ A+++H+C PN + ++ A+ I GD + T+Y + T DR LR
Sbjct: 198 IFPDVALMNHSCCPNVIVTY--KGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLR 255
Query: 680 MSKCFDCTCDRCKDPTELETYLGKSFCLVYCEIRSLASLVSLDNCEEAMRYLAESTEIIK 739
S F C C C + + + + ++ +V A+ +
Sbjct: 256 DSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPS 315
Query: 740 TEPDLSTLLIDKAESL 755
++ L +K S+
Sbjct: 316 ELLEICELSQEKMSSV 331
Score = 38.3 bits (88), Expect = 0.009
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 317 CEVC--KVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYKVVRNDILGRHMV 369
CE C + KCG C Q FYC QK+ W HK C+ V+ + V
Sbjct: 52 CECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETV 106
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 68.5 bits (167), Expect = 1e-14
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 313 DSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
+ +C C AS +C C +YC + Q +HW++H C
Sbjct: 14 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVL 56
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 60
Score = 66.1 bits (161), Expect = 5e-14
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 313 DSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
S C C AS C GCN YC Q + W++H C+
Sbjct: 14 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSG 56
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 66.1 bits (161), Expect = 6e-14
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 313 DSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
S C C AS C GCN YC Q + W++H C +
Sbjct: 16 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQ 58
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding
protein; NMR {Homo sapiens}
Length = 60
Score = 66.1 bits (161), Expect = 6e-14
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 316 KCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
C C AS C GCN YC Q + W++H C +
Sbjct: 15 SCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQ 54
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Length = 52
Score = 65.6 bits (160), Expect = 7e-14
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 308 VDKKMDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAK 355
+D + C C A +C GC++V YCS Q++ WK+H+ C +
Sbjct: 3 MDAERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ 50
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 5e-07
Identities = 94/620 (15%), Positives = 178/620 (28%), Gaps = 165/620 (26%)
Query: 91 DFVKAFVYGFDVDDALALLR-------LDNLFIES---------FEI------KDVKTLK 128
F AFV FD D + + +D++ + F + V+
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 129 GDHLSRAIGRLA--------GKGGRTKFTIENITKT-RIVIADSKIHV------------ 167
+ L L T+ IE + +K +V
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 168 ---LGSYQNVQV-----------ALKALSNL-ILGSPPNKVYGGILCSRCRHHVISTNPL 212
L +NV + AL + + K++ + C L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEML 202
Query: 213 DNL-AKWKCIMCSHTLTAKQIAMGNDSIKSELAGL--DKTEPTGLEMFLD---------K 260
L + S + + I + SI++EL L K L + L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNA 261
Query: 261 FQAQDSVL---HDQNQHIVQAKLALLQIYETSVEDQKCQLNVDDQKCQL--NVDKKMDSG 315
F +L + V L+ S++ L D+ K L +D +
Sbjct: 262 FNLSCKILLTTRFKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 316 KCEVCK--------VAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYKVVRNDILGRH 367
EV +A S++ W +K V D L
Sbjct: 319 PREVLTTNPRRLSIIAESIR-------------DGLATWDN-------WKHVNCDKLTTI 358
Query: 368 MVATKDIREGEIILEE-KPLVVGPKTASVPLCLGCHRTLKP--TSMEENEPL----SFYK 420
+ ++ ++ E + L V P +A +P L + +++ + +K
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 421 CSDC-GWPLCAPRCKSLPSHQKECKLMKDNQY---KSTIQFENETKKESAYCCIAPLRSP 476
S P S+PS E K+ +N+Y +S + Y +
Sbjct: 414 YSLVEKQP--KESTISIPSIYLELKVKLENEYALHRSIVD---------HY-------NI 455
Query: 477 LRCLLLERPLLDELLTLDA--------HLNERINTKLYEIYR---VNLVRFIKD-VLHMD 524
+ + + LD HL + + ++R ++ RF++ + H
Sbjct: 456 PKTFDSDDLIPPY---LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDS 511
Query: 525 VSEETILRIAGILDTNAFDIRRSVGKI-KIRGIY-MKTAMLSHNCKPNTKHVIVNEDFSL 582
+ IL+T ++ I Y + +++I ++ L
Sbjct: 512 TAWNA---SGSILNTLQ-QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 583 QLIALVNICKGDIISTTYTQ 602
IAL+ I + Q
Sbjct: 568 LRIALMAE-DEAIFEEAHKQ 586
Score = 49.9 bits (118), Expect = 3e-06
Identities = 83/559 (14%), Positives = 154/559 (27%), Gaps = 170/559 (30%)
Query: 254 LEMFLDKFQA-------QD---SVLHDQN-QHIVQAKLALLQIYE--TSVEDQK---CQL 297
L +F D F QD S+L + HI+ +K A+ ++ ++ Q
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 298 NVDDQKCQLNVDKKMDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHK--PGCAK 355
V++ ++N M K E Q ++ + +Q + + AK
Sbjct: 82 FVEEV-LRINYKFLMSPIKTE------------QRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 356 YKVVRNDILGRHMVATKDIREGEIILEEKPLVV--GPKTASVPLCLGCHRT------LKP 407
Y V R +R+ + L V+ G G +T
Sbjct: 129 YNVSRLQPY-------LKLRQALLELRPAKNVLIDGVL--------GSGKTWVALDVCLS 173
Query: 408 TSMEENEP-----LSFYKCSDCG------WPLCAPRCKSLPSHQKECKLMKDNQYKSTIQ 456
++ L+ C+ L +Q + + + S I+
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL---------YQIDPNWTSRSDHSSNIK 224
Query: 457 FENETKKESAYCCIAPLRSPLRCLLLERPLLDELLTLDAHLNERINTKLYEIYRVNLVRF 516
+ + LR LL +P + LL L
Sbjct: 225 LRIHSIQAE-----------LRRLLKSKPYENCLLVLL---------------------- 251
Query: 517 IKDVLHMDVSEETILRIAGILDTNAFDIR-------RSVGKI-KIRGIYMKTAMLSHNCK 568
+V NAF++ R + L H+
Sbjct: 252 -------NVQNAKAW--------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 569 PNTKHVIVNEDFSLQLIAL-VNICKGDI-ISTTYTQPFWGTM-DRRLHLRMSKWIYMKTA 625
T D L+ ++ D+ T P ++ + ++ W K
Sbjct: 297 TLT------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-- 348
Query: 626 MLSHNCKPNTKHVI---VN----EDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRR-LH 677
H +I +N ++ L I T W + + +
Sbjct: 349 ---HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 678 LRMSKCFDCTCDRC---KDPTELETYLGKSFCLVYCEIRSLASLVSLDNCEEAMRYLAES 734
+ ++K K P E + +Y E++ V L+N R + +
Sbjct: 406 VVVNKL----HKYSLVEKQPKESTISIP----SIYLELK-----VKLENEYALHRSIVDH 452
Query: 735 TEIIKTEP--DLSTLLIDK 751
I KT DL +D+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQ 471
Score = 42.5 bits (99), Expect = 6e-04
Identities = 42/319 (13%), Positives = 89/319 (27%), Gaps = 82/319 (25%)
Query: 493 LDAHLNERINTKLYEIYRVNLVRFIKDVLHMDVSEETILRIAGILDTNAFDIRRSVGKIK 552
+D E + +I V F+ + DV + IL D
Sbjct: 7 MDFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMP----KSILSKEEIDHIIMSKDAV 61
Query: 553 IRGIYMKTAMLSHNCKPNTKHVIVNE----DFSLQLIALVNICKG-DIISTTYTQ---PF 604
+ + +LS V E ++ + + + +++ Y +
Sbjct: 62 SGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 605 WGTMD--RRLHL-RMSKWIYMKTAMLSHNCKPNT-----------KHVIVNE---DFSLQ 647
+ + ++ R+ ++ ++ A+L +P K + + + +Q
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 648 LIALVNIRKGDIISTTYTQPFWGTMDR------------RLHLRMSKCFDCTCDRCKDPT 695
I FW + +L ++ + D +
Sbjct: 178 CKMDFKI-------------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 696 ----ELETYLGKSFCL-VYCEIRSLASLVSLDNCEEAMRYLAESTEIIKTEPDLS--TLL 748
++ L + Y L LV L N ++ + +LS LL
Sbjct: 225 LRIHSIQAELRRLLKSKPYE--NCL--LV-LLN--------VQNAKAWNAF-NLSCKILL 270
Query: 749 I--DKAESLNLKNEKTTPI 765
K + L TT I
Sbjct: 271 TTRFKQVTDFLSAATTTHI 289
Score = 33.7 bits (76), Expect = 0.26
Identities = 45/305 (14%), Positives = 81/305 (26%), Gaps = 89/305 (29%)
Query: 55 IVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALALL----- 109
L + L +R ++ T+ +S + D+ +LL
Sbjct: 258 AWNAFNLSCKILLTTRFKQV-----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 110 ---------------RLDNLFIESFE-----IKDVKTLKGDHLSRAIGRLAGKGGRTKFT 149
R ++ ES + K + D L+ I + +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII----------ESS 362
Query: 150 IENITKT-------RIVI--ADSKI--HVLG------SYQNVQVALKALSN--LILGSPP 190
+ + R+ + + I +L +V V + L L+ P
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 191 NKVYG--GILCSRCR--------HHVISTNPLDNLAKWKCIMCSHTLTAKQIAMGNDS-- 238
I H I +D+ K S L + D
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSI----VDHYNIPKT-FDSDDLIPPYL----DQYF 473
Query: 239 ---IKSELAGLDKTEPTGL--EMFLD-KFQAQDSVLHDQNQHIVQAKLALLQ---IYETS 289
I L ++ E L +FLD +F Q + + L LQ Y+
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 290 VEDQK 294
+ D
Sbjct: 534 ICDND 538
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-06
Identities = 54/303 (17%), Positives = 95/303 (31%), Gaps = 91/303 (30%)
Query: 505 LYEIYRVNLVRFIKDVLH-MDVSEETIL--RIAGILDTN------AFDIRRSVGKIKIRG 555
LY+ + +DV + D + I I+ N F + GK +IR
Sbjct: 1635 LYKTSKA-----AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK--GK-RIRE 1686
Query: 556 IYMKTAMLSHNC---KPNTKHVI--VNEDFSLQLIALVNIC----KGDIISTTYTQPFWG 606
Y AM+ K T+ + +NE + + KG + +T +TQP
Sbjct: 1687 NYS--AMIFETIVDGKLKTEKIFKEINEHST-------SYTFRSEKGLLSATQFTQP--- 1734
Query: 607 TMDRRLHLRMSKWIYMKTAMLSHNCKPNTK----H--------VIVNEDFSLQ-LIALVN 653
L M K + + S P H + + S++ L+ +V
Sbjct: 1735 ----AL-TLMEKAAF--EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 654 IRKGDIISTTYTQPFWGTMDRRLHLRMSKCFDCTCDRCKDPTELETYLGKSFCLVYCEIR 713
R G + + G R + M +P + + E
Sbjct: 1788 YR-GMTMQVAVPRDELG----RSNYGMIAI---------NPGRVAASFSQEALQYVVERV 1833
Query: 714 SLAS--LVSL--DNCE----------EAMRYLAESTEIIKTEP-DLSTLLIDKAESLNLK 758
+ LV + N E A+ + IK + D+ L +SL+L+
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL----QKSLSLE 1889
Query: 759 NEK 761
+
Sbjct: 1890 EVE 1892
Score = 42.3 bits (99), Expect = 6e-04
Identities = 56/344 (16%), Positives = 96/344 (27%), Gaps = 105/344 (30%)
Query: 39 HRYGPLKENWMKIFTPIVEHLKLQVR---------FNLKS--RNVEIRLSPETED----- 82
Y L + +K + L N+ N P+ +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--PDKDYLLSIP 235
Query: 83 -----ISNLQKAADFVKAFVYGFDVDDALALLR---------LDNLFI------ESFEIK 122
I +Q A V A + GF + + L+ + + I ESF
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF-- 293
Query: 123 DVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIADSKIH----------VLG-SY 171
+ +AI L G R N + ++ DS + + +
Sbjct: 294 -------VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 172 QNVQVALKALSNLILGSPPNK-VYGGILCSRCRHHVISTNPLD------NLAKWKCIMCS 224
+ VQ + N L P K V ++ ++ V+S P L K K
Sbjct: 347 EQVQDYVNKT-NSHL--PAGKQVEISLVNGA-KNLVVSGPPQSLYGLNLTLRKAKA---- 398
Query: 225 HTLTAKQIAMGNDSIKSELAGLDKTEPTGLEMFLDKF---------QAQDSVLHDQNQHI 275
G D + + + FL A D + D ++
Sbjct: 399 --------PSGLDQSRIP---FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 276 VQAKLALLQI--YETSVED----QKCQLNVD----DQKCQLNVD 309
V +QI Y+T D + ++ D +L V
Sbjct: 448 VSFNAKDIQIPVYDT--FDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 39.6 bits (92), Expect = 0.004
Identities = 53/349 (15%), Positives = 102/349 (29%), Gaps = 139/349 (39%)
Query: 487 LDELLTLDAHLNERINTKLYEIYRVNLVRFIKDVLHMDVSEETILRIAGILDTNAFDIRR 546
+EL R LY+ Y V + IK A L
Sbjct: 170 FEEL---------R---DLYQTYHVLVGDLIK-------------FSAETLSELIRT-TL 203
Query: 547 SVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDF------SLQLIALV------NICK-- 592
K+ +G+ + L + P+ ++D+ S LI ++ K
Sbjct: 204 DAEKVFTQGLNIL-EWLEN---PSNTP---DKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 593 ----GDIIS-----TTYTQ-----------PFWGTMDRRLH--LRMSKWI-------Y-- 621
G++ S T ++Q W + + + + +I Y
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 622 -----------------MKTAMLS-HNCKPNT--KHV-IVN----EDFSLQLIALVNIRK 656
+ + MLS N +V N ++ I+LVN K
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVNGAK 375
Query: 657 GDIISTTYTQPFWG---TMDR-RLHLRMSKCFDCTCDRCKDP-TELETYLGKSFCLVYCE 711
++S G ++ L LR +K D+ + P +E + F
Sbjct: 376 NLVVS--------GPPQSLYGLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNRF------ 420
Query: 712 IRSLASLV---SLDNCEEAMRYLAESTEIIKTEPDLSTLLIDKAESLNL 757
L S L ++++I + + + + A+ + +
Sbjct: 421 ---LPVASPFHS--------HLLVPASDLINKDLVKNNVSFN-AKDIQI 457
Score = 37.3 bits (86), Expect = 0.020
Identities = 48/301 (15%), Positives = 88/301 (29%), Gaps = 113/301 (37%)
Query: 91 DFVKAFVYGFDV-DDALALLRLDNLFIES--FEIKDVKTLKGDHLSRAIGRLAGKGGR-- 145
D K DV + A DN F ++ F I D+ + + ++ I G+ G+
Sbjct: 1634 DLYKTSKAAQDVWNRA------DNHFKDTYGFSILDI--VINNPVNLTI-HFGGEKGKRI 1684
Query: 146 ----TKFTIENI----TKTRIVIADSKIHVLGSY------------QNVQVALKALSNLI 185
+ E I KT + + H SY Q Q AL +
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEH-STSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 186 L-------GSPPNKVYGGILCSRCRHH-------------VISTNPLDNLAKWKCIMCSH 225
P + + G H V+S +++L +
Sbjct: 1744 FEDLKSKGLIPADATFAG--------HSLGEYAALASLADVMS---IESLVE-------- 1784
Query: 226 TLTAK-----QIAMGNDSIKSELAGLDKTEPTGLEMFLDKFQAQDSVLHDQNQHIVQAKL 280
+ Q+A+ D + G+ P + L + + +
Sbjct: 1785 -VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS-----QEALQYVVERVGKRTG 1838
Query: 281 ALLQI--YETSVEDQKCQLNVDDQKCQL-------NVD------KKMDSGKCEVCKVAAS 325
L++I Y NV++Q Q +D + K ++ ++ S
Sbjct: 1839 WLVEIVNY-----------NVENQ--QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 326 L 326
L
Sbjct: 1886 L 1886
Score = 32.3 bits (73), Expect = 0.78
Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 41/144 (28%)
Query: 8 ADAMEVDDA--------KAQEPAVKK----AKHVDMRKVPVPNHRYGPLKENWMKIFTPI 55
AD M ++ + AV + + M + P + + +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-NPGRVAASFSQ---EALQYV 1829
Query: 56 VEHLK------LQ-VRFNLKSRNVEIRLSPETEDISNLQKAADFVKAFVYGFDVDDALAL 108
VE + ++ V +N N + + + + + +F+K + +
Sbjct: 1830 VERVGKRTGWLVEIVNYN--VENQQYVAAGDLRALDTVTNVLNFIKL--------QKIDI 1879
Query: 109 LRLDNLFIESFEIKDVKTLKGDHL 132
+ L +S +++V+ HL
Sbjct: 1880 IELQ----KSLSLEEVE----GHL 1895
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 42.3 bits (100), Expect = 6e-05
Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 584 LIALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWIYMKT------------AMLSHNC 631
+ A + KG+++ + + Y+ + A+ +H+
Sbjct: 18 VFARKSFEKGELVEE-CL----CIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSK 72
Query: 632 KPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRR 675
PN +H + +++ + I G+ I+ +Y +W + R
Sbjct: 73 DPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRL 116
Score = 39.2 bits (92), Expect = 6e-04
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 552 KIRGIYMKTAML-SHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDR 610
+ + + + +H+ PN +H + +++ + I G+ I+ +Y +W + R
Sbjct: 56 NMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPR 115
Query: 611 R 611
Sbjct: 116 L 116
Score = 27.3 bits (61), Expect = 8.5
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 355 KYKVVRNDILGRHMVATKDIREGEIILE 382
+ V ++ + G + A K +GE++ E
Sbjct: 5 RVIVKKSPLGGYGVFARKSFEKGELVEE 32
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 44.1 bits (103), Expect = 1e-04
Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 42/263 (15%)
Query: 346 W-KEHKPGCAKYKVVRNDILGRHMVATKDIREGEIILE--EKPLVVGPKTASVPLCLGCH 402
W E+ +++V G + AT+DI+ E+ L K L++ ++A + +
Sbjct: 84 WASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRK-LLMTVESAKNSVLGPLY 142
Query: 403 RTLKPTSMEENEPLSFY-----KCSDCGWPLCAPRCKSLPSHQKECKLMKDNQYKSTIQF 457
+ N L+F+ + W P ++LPS +Y + + F
Sbjct: 143 SQDRILQAMGNIALAFHLLCERASPNSFW---QPYIQTLPS-----------EYDTPLYF 188
Query: 458 ENETKKESAYCCIAPLRSPLRCLLLERPLLDELLTLDAHLNERINTKLYEIYRVNLVRFI 517
E + + L + ++ + + R Y++ + +
Sbjct: 189 EEDEVR----------------YLQSTQAIHDVFSQYKNT-ARQYAYFYKVIQTHPHAN- 230
Query: 518 KDVLHMDVSEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVN 577
K L + E + T I G + M +H T
Sbjct: 231 KLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYN-L 289
Query: 578 EDFSLQLIALVNICKGDIISTTY 600
ED + +AL + G+ I Y
Sbjct: 290 EDDRCECVALQDFRAGEQIYIFY 312
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 94
Score = 36.6 bits (85), Expect = 0.003
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVI-----ADSKIHVLGSYQNVQVALKALSNLI 185
+ GK G +E T T+I I ++I + G+ + ++ A + +
Sbjct: 25 KEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLIS 82
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA
binding protein; NMR {Homo sapiens}
Length = 106
Score = 36.7 bits (85), Expect = 0.004
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA-------DSKIHVLGSYQNVQVALKALSNLI 185
++G + G+ G I+N RI + H++G + A + +++L+
Sbjct: 19 RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLL 78
Query: 186 L---GSPPNKVYG 195
PP G
Sbjct: 79 QSLRSGPPGPPGG 91
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA
binding protein; NMR {Homo sapiens}
Length = 107
Score = 36.4 bits (84), Expect = 0.004
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK----------IHVLGSYQNVQVALKALS 182
+ G + G+GG I T + I+ + GS Q + A + +
Sbjct: 15 THKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIE 74
Query: 183 NLILGSPP 190
I G
Sbjct: 75 EKIEGPLC 82
>1x4n_A FAR upstream element binding protein 1; KH domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.51.1.1 PDB: 2opu_A
Length = 92
Score = 35.9 bits (83), Expect = 0.005
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-------KIHVLGSYQNVQVALKALSNLI 185
+G + G+GG I+ + +I IA + G+ ++VQ A + L ++
Sbjct: 23 DGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIV 82
>1x4m_A FAR upstream element binding protein 1; KH domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.51.1.1
Length = 94
Score = 35.5 bits (82), Expect = 0.008
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA---------DSKIHVLGSYQNVQVALKALSN 183
+ G + GKGG T ++ ++V+ D + + G VQ A + +
Sbjct: 23 ASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLE 82
Query: 184 LILGSPPN 191
LI
Sbjct: 83 LIRDQGSG 90
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA
binding protein, KH domain, KSRP, posttranscriptional
regulation, mRNA decay; NMR {Homo sapiens}
Length = 164
Score = 36.3 bits (84), Expect = 0.013
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVI-------ADSKIHVLGSYQNVQVALKALSNLI 185
++G + G+ G I+N RI + H++G + A + +++L+
Sbjct: 99 RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLL 158
Score = 33.6 bits (77), Expect = 0.11
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK---------IHVLGSYQNVQVALKALSN 183
+ G + GKGG T ++ ++++ + ++G VQ A + + +
Sbjct: 10 AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 69
Query: 184 LILGSPPNKVYGG 196
++
Sbjct: 70 ILRERDQGGFGDR 82
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain,
cell projection, cytoplasm, nucleus, phosphoprotein,
translation regulation; 2.75A {Homo sapiens}
Length = 163
Score = 35.9 bits (83), Expect = 0.015
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA---------DSKIHVLGSYQNVQVALKALSN 183
+ A GR+ GKGG+T ++N+T +V+ + ++G + Q+A + + +
Sbjct: 93 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152
Query: 184 LI 185
++
Sbjct: 153 IL 154
Score = 31.7 bits (72), Expect = 0.42
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK--------IHVLGSYQNVQVALKALSNL 184
++A+G + GK G+ + I IA + + + G + A +
Sbjct: 11 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGK 70
Query: 185 ILGSPPN 191
+
Sbjct: 71 LKEENFF 77
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 37.1 bits (85), Expect = 0.019
Identities = 39/250 (15%), Positives = 75/250 (30%), Gaps = 57/250 (22%)
Query: 365 GRHMVATKDIREGEIILE--EKPLVVGPKTASVPLCLGCHRTLKPTSM-------EENEP 415
G +VA KDI ++IL+ ++ L + P + LKP E +
Sbjct: 33 GLGLVALKDISRNDVILQVPKR-LWINPDAVAASEIGRVCSELKPWLSVILFLIRERSRE 91
Query: 416 LSFYKCSDCGWPLCAPRCKSLPSHQKECKLMKDNQYKSTIQFENETKKESAYCCIAPLRS 475
S +K LP + STI + E +E
Sbjct: 92 DSVWK----------HYFGILPQ-----------ETDSTIYWSEEELQE----------- 119
Query: 476 PLRCLLLERPLLDELLTLDAHLNERINTKLYEIYRVNLVRFIKDVLHMDVSEETILRIAG 535
L LL +++ ++ ++ K + V+ + G
Sbjct: 120 -----LQGSQLLKTTVSVKEYVKNE-----CLKLEQEIILPNKRLFPDPVTLDDFFWAFG 169
Query: 536 ILDTNAFDIRRSVG-----KIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNI 590
IL + AF R+ + H + + + D+ L + +++
Sbjct: 170 ILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSV 229
Query: 591 CKGDIISTTY 600
G+ + Y
Sbjct: 230 KAGEQVYIQY 239
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH
domain, hairpin, RNA-binding protein complex; HET: 5BU;
1.94A {Homo sapiens} PDB: 2ann_A*
Length = 178
Score = 36.0 bits (83), Expect = 0.022
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA---------DSKIHVLGSYQNVQVALKALSN 183
+ G + GKGG T I + + ++ + + V G + + A++ +
Sbjct: 112 NSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQ 171
Query: 184 LILGSP 189
I P
Sbjct: 172 KIQEDP 177
Score = 31.7 bits (72), Expect = 0.45
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK----------IHVLGSYQNVQVALKALS 182
S A G + GKGG+T ++ T I ++ SK + G+ + + ++
Sbjct: 14 SYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIA 73
Query: 183 NLILGSPPN 191
I P N
Sbjct: 74 EKIREMPQN 82
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta
fold, DNA binding protein; 0.95A {Homo sapiens} SCOP:
d.51.1.1 PDB: 1zzj_A 1zzi_A
Length = 82
Score = 33.4 bits (77), Expect = 0.029
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-------KIHVLGSYQNVQVALKALSNLI 185
G + GKGG+ I + + I I + I + G+ +Q A L N +
Sbjct: 15 KDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 74
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding,
DNA-binding, nucleus, phosph ribonucleoprotein,
RNA-binding, RNA binding protein; NMR {Homo sapiens}
Length = 160
Score = 35.1 bits (81), Expect = 0.030
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA--------DSKIHVLGSYQNVQVALKALSNL 184
+ G L GKGG I T ++ +A + I + G Q++ +K + +
Sbjct: 97 ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVV 156
Query: 185 IL 186
+L
Sbjct: 157 ML 158
Score = 34.4 bits (79), Expect = 0.057
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK-----IHVLGSYQNVQVALKALSNLILG 187
+ +G + GK G + + + RI I++ I + G + A + + +
Sbjct: 13 GKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 72
Query: 188 SPPNKVYGG 196
+ +
Sbjct: 73 DISSSMTNS 81
>2dgr_A Ring finger and KH domain-containing protein 1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 83
Score = 33.4 bits (76), Expect = 0.040
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 134 RAIGRLAGKGGRTKFTIENITKTRIVIADSK----IHVLGSYQNVQVALKALSNLI 185
R +G + G G T I+ T T IV V G +NV A + + I
Sbjct: 19 RVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHI 74
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA
binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Length = 82
Score = 33.0 bits (76), Expect = 0.046
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-------KIHVLGSYQNVQVALKALSNLI 185
+ IG + G+ G I ++ +I IA+ ++ + GS ++ +A ++ +
Sbjct: 14 NNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 73
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET:
DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Length = 174
Score = 34.8 bits (80), Expect = 0.050
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS----------KIHVLGSYQNVQVALKALS 182
+ G + GKGG T +I + RI + + + G+ Q + A + +
Sbjct: 112 TGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 171
Query: 183 NLI 185
I
Sbjct: 172 EKI 174
Score = 32.5 bits (74), Expect = 0.29
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 9/118 (7%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK-------IHVLGSYQNVQVALKALSNLI 185
A+G + G+ G I+N RI + G Q A + +++L+
Sbjct: 11 RFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLL 70
Query: 186 LGSPPNKVYGGILCSRCRHHVISTNPLDNLAKWK--CIMCSHTLTAKQIAMGNDSIKS 241
G R R + + + T I G ++IKS
Sbjct: 71 RSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKS 128
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 35.0 bits (80), Expect = 0.067
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 624 TAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSKC 683
A ++H+CKPN K V + + + L +I GD ++ Y + F+G K
Sbjct: 177 AAFINHDCKPNCKFV-PADGNAACVKVLRDIEPGDEVTCFYGEGFFGE----------KN 225
Query: 684 FDCTCDRCKD 693
C C C+
Sbjct: 226 EHCECHTCER 235
Score = 31.2 bits (70), Expect = 1.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 542 FDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYT 601
F I S K + A ++H+CKPN K V + + + L +I GD ++ Y
Sbjct: 159 FSIMYSTRKRSAQLWLGPAAFINHDCKPNCKFV-PADGNAACVKVLRDIEPGDEVTCFYG 217
Query: 602 QPFWG 606
+ F+G
Sbjct: 218 EGFFG 222
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo
sapiens}
Length = 85
Score = 32.7 bits (75), Expect = 0.069
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVI---------ADSKIHVLGSYQNVQVALKALSN 183
+ G + GKGG T ++ ++++ D + ++G VQ A + + +
Sbjct: 22 AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 81
Query: 184 LI 185
++
Sbjct: 82 IL 83
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA
binding protein/DNA complex; 1.60A {Homo sapiens}
Length = 76
Score = 32.3 bits (74), Expect = 0.075
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-------KIHVLGSYQNVQVALKALSNLI 185
+ IG + G+ G I ++ +I IA+ ++ + GS ++ +A ++ +
Sbjct: 13 NDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRL 72
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding
protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1
PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Length = 73
Score = 32.2 bits (74), Expect = 0.079
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLI 185
+ +G + GK G + + + RI I++ I + G + A + + +
Sbjct: 13 GKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 70
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 104
Score = 32.8 bits (75), Expect = 0.081
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLI 185
+ G+ G + + + I + I + G N+ A L +
Sbjct: 25 FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERV 82
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding
motif, protein/RNA structure, RNA binding protein/RNA
complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Length = 87
Score = 32.3 bits (74), Expect = 0.092
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS----------KIHVLGSYQNVQVALKALS 182
+G + GKGG+T + +T RI I+ ++ + GS Q A +S
Sbjct: 11 ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLIS 70
Query: 183 NLI 185
+
Sbjct: 71 QRV 73
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens}
SCOP: d.51.1.1 PDB: 1vih_A
Length = 71
Score = 31.6 bits (72), Expect = 0.11
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLI 185
+ L GK G I++ K + I I + G Q VQ A + L L
Sbjct: 13 HKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 97
Score = 32.1 bits (73), Expect = 0.13
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS--------KIHVLGSYQNVQVALKALSNL 184
+ ++ G+ G I I D +I + G +N + A A+ +
Sbjct: 25 PKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRI 84
Query: 185 I 185
+
Sbjct: 85 V 85
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
g.43.1.1
Length = 67
Score = 31.1 bits (70), Expect = 0.14
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 317 CEVCKVAASLKCGGCNQVFYCS----KSHQKQHWKEHK 350
C +C A+L+C GC+ YC+ + H KEH+
Sbjct: 11 CCICNEDATLRCAGCDGDLYCARCFREGHDNFDLKEHQ 48
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 32.1 bits (73), Expect = 0.15
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS------KIHVLGSYQNVQVALKALSNLI 185
R R+ G G+ I + K I S + V G +NV+ A+ + NL
Sbjct: 25 HRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLE 83
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain,
alpha-beta fold RNA-binding motif, immune system; 2.00A
{Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Length = 76
Score = 31.1 bits (71), Expect = 0.19
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS----------KIHVLGSYQNVQVALKALS 182
+G + GKGG+T + +T RI I+ ++ + GS Q A +S
Sbjct: 11 ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLIS 70
Query: 183 NLI 185
+
Sbjct: 71 QRV 73
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA methyllysine
signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Length = 449
Score = 33.3 bits (75), Expect = 0.26
Identities = 36/251 (14%), Positives = 72/251 (28%), Gaps = 44/251 (17%)
Query: 360 RNDILGRHMVATKDIREGEIILE-EKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSF 418
+ + G MVA + ++ GE++ + ++ T S+ L R + S PL
Sbjct: 45 QGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLLERER-VALQSQSGWVPLLL 103
Query: 419 Y-----KCSDCGWPLCAPRCKSLPSHQKECKLMKDNQYKSTIQFENETKKESAYCCIAPL 473
+ W P P + + + + E
Sbjct: 104 ALLHELQAPASRW---RPYFALWPELG---------RLEHPMFWPEEE------------ 139
Query: 474 RSPLRCLLLERPLLDELLTLDAHLNERINTKLYEIYRVNLVRFIKDVLHMDVSEETILRI 533
RCLL + + + A++ + + + F S E ++
Sbjct: 140 ---RRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFSLR----VRSLELYHQL 192
Query: 534 AGILDTNAFDIRRSVGKIKIRGIYMKTA----MLSHNCKPNTKHVIVNEDFSLQLIALVN 589
++ +F + + +L+H N ++A
Sbjct: 193 VALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLR--MVATQP 250
Query: 590 ICKGDIISTTY 600
I KG I TY
Sbjct: 251 IPKGHEIFNTY 261
>1we8_A Tudor and KH domain containing protein; structural genomics, riken
structural genomics/proteomics initiative, RSGI, RNA
binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Length = 104
Score = 30.6 bits (69), Expect = 0.47
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS---------KIHVLGSYQNVQVALKALSN 183
R++GR+ G+GG T +I + +I I + G+ + V A +
Sbjct: 23 QRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82
Query: 184 LI 185
+
Sbjct: 83 KV 84
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 28.8 bits (64), Expect = 0.83
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 307 NVDKKMDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKP 351
+ K + C +C +C C V YCS ++H ++ P
Sbjct: 5 SSGLKCSTVVCVICLEKPKYRCPACR-VPYCSVVCFRKHKEQCNP 48
>1wad_A Cytochrome C3; electron transport, calcium binding; HET: HEM; 1.80A
{Desulfovibrio gigas} SCOP: a.138.1.1 PDB: 1qn0_A*
1qn1_A*
Length = 112
Score = 29.9 bits (66), Expect = 1.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 391 KTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
K + P C+ CH+ E + L+ K S C
Sbjct: 76 KGGAKPTCISCHKDKAGDDKELKKKLTGCKGSAC 109
>1j0p_A Cytochrome C3; high resolution Y43L mutant, electron transport;
HET: HEM; 0.91A {Desulfovibrio vulgaris} SCOP: a.138.1.1
PDB: 1it1_A* 1j0o_A* 2ffn_A* 1wr5_A* 2ewi_A* 2cdv_A*
2ewk_A* 2yyw_A* 2yxc_A* 2z47_A* 2yyx_A* 2ewu_A* 1a2i_A*
1gx7_E* 2bpn_A* 2cth_A* 2cym_A* 1mdv_A*
Length = 108
Score = 29.5 bits (65), Expect = 1.3
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 390 PKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
K C+GCH + + L+ K S C
Sbjct: 72 DKGTKFKSCVGCHLETAGADAAKKKELTGCKGSKC 106
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
{Toxoplasma gondii}
Length = 178
Score = 30.0 bits (68), Expect = 1.9
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 84 SNLQKAADFVKAFVYGFDVDDA---LALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRLA 140
N + F+ F+ + A++ ++++ + + A+ +
Sbjct: 33 QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMP 92
Query: 141 GKGGRT 146
K G T
Sbjct: 93 YKKGST 98
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 30.0 bits (68), Expect = 2.3
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 317 CEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGCAKYKVVRNDILGRHMVATKDIRE 376
E ++ ++ + + H K+ K V R+ I GR + ++I
Sbjct: 21 EEEVQLKSARRATSMDLPMPMRFRHLKKTSK------EAVGVYRSPIHGRGLFCKRNIDA 74
Query: 377 GEIILE 382
GE+++E
Sbjct: 75 GEMVIE 80
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 30.4 bits (68), Expect = 2.6
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 110 RLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIADSKIHV 167
RL L +++ +IK V + G +R IG K G T + + K++ +IA+ +IH
Sbjct: 217 RLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHG 274
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease
5'-3', R interference; 3.20A {Drosophila melanogaster}
Length = 1140
Score = 30.3 bits (67), Expect = 2.7
Identities = 10/85 (11%), Positives = 23/85 (27%)
Query: 621 YMKTAMLSHNCKPNTKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRM 680
Y++ + PNT+H + D +L ++ L ++ + +
Sbjct: 183 YIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEETR 242
Query: 681 SKCFDCTCDRCKDPTELETYLGKSF 705
R E +
Sbjct: 243 FFLLHLGLLREYLELEFDALRTDEH 267
Score = 30.3 bits (67), Expect = 3.0
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 7/120 (5%)
Query: 503 TKLYEIYRVNLVRFIKDVLHMDVSEETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAM 562
T+ + L F+K + D + I + G+ KI Y++
Sbjct: 136 TEFMVRLQEGLRAFLKTKISTDPLWQRCTVI--LSGQE----APGEGEHKIMD-YIRYMK 188
Query: 563 LSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWIYM 622
+ PNT+H + D +L ++ L ++ + + +++
Sbjct: 189 TQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEETRFFLLHL 248
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 30.2 bits (67), Expect = 3.0
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 147 KFTIENITKTRIVIADSKIHVLGSYQNVQVALKALSNLILGSPPNKVYGGILCSRCRHHV 206
+ T+ + K ++ SK+ + + L + I P N+ + C RCR ++
Sbjct: 183 RSTLNAVPKNSSLLKKSKLPFGLVIR----PYQHLYDDIDPPPLNEDGLIVRCRRCRSYM 238
Query: 207 ISTNPLDNLAK-WKCIMCSHT 226
+ W+C C
Sbjct: 239 NPFVTFIEQGRRWRCNFCRLA 259
>1up9_A Cytochrome C3; electron transport; HET: HEC; 1.35A {Desulfovibrio
desulfuricans} SCOP: a.138.1.1 PDB: 1gm4_A* 1gmb_A*
1upd_A* 2kmy_A* 2ksu_A* 3cyr_A* 1i77_A*
Length = 107
Score = 28.3 bits (62), Expect = 3.3
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 391 KTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
CL CH + E + L+ S C
Sbjct: 72 GELKHTSCLACHSKVVAEKPELKKDLTGCAKSKC 105
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
1bhq_1 1bho_1 1idn_1 3qa3_G
Length = 194
Score = 28.9 bits (65), Expect = 4.5
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 84 SNLQKAADFVKAFVYGFDVDDAL-ALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGK 142
+ ++ +FV + L +L++ F F K+ + + + +
Sbjct: 21 HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNN--PNPRSLVKPITQL 78
Query: 143 GGRTK 147
GRT
Sbjct: 79 LGRTH 83
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 28.9 bits (65), Expect = 5.1
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 84 SNLQKAADFVKAFVYGFDVDDA-LALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGK 142
N +FV+A + F +L++ N F F ++ + + + +
Sbjct: 25 RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRS--SNPLSLLASVHQL 82
Query: 143 GGRTK 147
G T
Sbjct: 83 QGFTY 87
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite,
phosphodiesterases,, hydrolase; 2.00A {Trypanosoma
cruzi} PDB: 3v94_A*
Length = 345
Score = 29.0 bits (65), Expect = 5.8
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 517 IKDVLHMDVSE--ETILRIAGILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKH- 573
+ H D+S ET+ + L FD +++ + + A + + +
Sbjct: 205 SHLIGHTDMSLHSETVAKHGAKLSAGGFDCTCKEDRLEALSLLLHAADIGASSRGVAIAR 264
Query: 574 --VIVNEDFSLQ 583
+++ ++F+ Q
Sbjct: 265 KWLVILQEFADQ 276
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 29.4 bits (65), Expect = 6.4
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 536 ILDTNAFDIRRSVGKIKIRGIYMKTAMLSHNCKPNTKHV----IVNEDFSLQ 583
++ N F++ K + M LS KP +V +F Q
Sbjct: 741 LIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQ 792
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger,
ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding
protein, USP; NMR {Homo sapiens}
Length = 126
Score = 27.8 bits (61), Expect = 7.5
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 293 QKCQLNVDDQKCQ-LNVDKKMDSGKCEVCKVAAS----LKCGGCNQVFYCSKSHQKQHWK 347
+K +NV+ CQ D K+ E + S LKCG + H +H+
Sbjct: 20 KKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYL 79
Query: 348 EHK 350
+
Sbjct: 80 TPR 82
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 28.0 bits (61), Expect = 7.7
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 357 KVVRNDILGRHMVATKDIREGEIILEEKPLVVGPKTASVPLCLGCHRTLKPTSMEENEPL 416
VV+ D R + I +E + C R L+P + N
Sbjct: 27 AVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLN--- 83
Query: 417 SFYKCSDCGWPLCAPRCKSLPSHQ----KECKLMKDNQYKSTIQFENETKK 463
S +C +C +C + P Q C L + + S + +
Sbjct: 84 SRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARVVKIGSLEWYYQHVRA 134
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase;
1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Length = 129
Score = 27.7 bits (61), Expect = 7.9
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 305 QLNVDKKMDS--GKCEVCKVAAS----LKCG--GCNQVFYCS---KSHQKQHWKE 348
QL+ ++ KC C + + L G C + ++ +H +H++E
Sbjct: 23 QLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRE 77
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 28.8 bits (63), Expect = 8.6
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 20/101 (19%)
Query: 84 SNLQKAADFVKAFVYGFDVDDA-LALLRLDNLFIESFEIKDVKTLKGDHLSRAIGRLAGK 142
N +FV+A + F +L++ N F F ++ + + + +
Sbjct: 146 RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRR--SSNPLSLLASVHQL 203
Query: 143 GGRTK------------FTIE-----NITKTRIVIADSKIH 166
G T F + K IVI D K
Sbjct: 204 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKE 244
>2cy3_A Cytochrome C3; electron transport (heme protein); HET: HEM; 1.70A
{Desulfomicrobium norvegicum} SCOP: a.138.1.1 PDB:
1w7o_A*
Length = 118
Score = 27.2 bits (59), Expect = 9.1
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 391 KTASVPLCLGCHRTLKPTSMEENEPLSFYKCSDC 424
+ A C+ CH+ LK ++ +P C C
Sbjct: 85 ENAFHTQCIDCHKALK----KDKKPTGPTACGKC 114
>3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.92A {Escherichia coli}
Length = 99
Score = 27.0 bits (60), Expect = 9.3
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 358 VVRNDILGRHMVATKDIREGEIIL 381
+ I H VA DI I+
Sbjct: 47 ELIEHIPQGHKVALLDIPANGEII 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,219,257
Number of extensions: 683075
Number of successful extensions: 1890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1858
Number of HSP's successfully gapped: 113
Length of query: 766
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 665
Effective length of database: 3,881,772
Effective search space: 2581378380
Effective search space used: 2581378380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)