RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8224
(766 letters)
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 95.6 bits (238), Expect = 3e-24
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 114 LFIESFEIKDVKTLKGDHLSRAIGRLAGKGGRTKFTIENITKTRIVIADSKIHVLGSYQN 173
+ ++K V +HL R GR+ G+GGR + TIE +T T I + + ++ ++G Y+
Sbjct: 2 QILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYER 61
Query: 174 VQVALKALSNLILGSPPNKVYGGI 197
A +A+ L G + VY +
Sbjct: 62 AMAAKQAIEMLAEGRMHSTVYRHL 85
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 59.3 bits (143), Expect = 4e-12
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 313 DSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGC 353
+ +C C AS +C C +YC + Q +HW++H C
Sbjct: 7 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 47
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 57.3 bits (138), Expect = 2e-11
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 309 DKKMDSGKCEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGC 353
++ S C C AS C GCN YC Q + W++H C
Sbjct: 3 QQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 47
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 56.9 bits (137), Expect = 2e-11
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 317 CEVCKVAASLKCGGCNQVFYCSKSHQKQHWKEHKPGC 353
C C A +C GC++V YCS Q++ WK+H+ C
Sbjct: 2 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC 38
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 52.3 bits (124), Expect = 6e-08
Identities = 33/246 (13%), Positives = 77/246 (31%), Gaps = 49/246 (19%)
Query: 365 GRHMVATKDIREGEIILEE-KPLVVGPKTASVPLCLGCHRTLKPTSMEENEPLSFYKCSD 423
G +VA KDI ++IL+ K L + P + LKP + +
Sbjct: 32 GLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKP-----WLSVILFLI-- 84
Query: 424 CGWPLCAPRCKSLPSHQKECKLMKDNQYKSTIQFENETKKESAYCCIAPLRSPLRCLLLE 483
++ + Y + E ++ + + L+
Sbjct: 85 ---------------RERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGS------- 122
Query: 484 RPLLDELLTLDAHLNERINTKLYEIYRVNLVRFIKDVLHMDVSEETILRIAGILDTNAFD 543
LL +++ ++ ++ K + V+ + GIL + AF
Sbjct: 123 -QLLKTTVSVKEYVKNE-----CLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFS 176
Query: 544 IRRSVGKIKIRGIYMKTAMLSHNCKPNTKHV---------IVNEDFSLQLIALVNICKGD 594
R+ + +++H+ T+ + + D+ L + +++ G+
Sbjct: 177 RLRNEN----LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE 232
Query: 595 IISTTY 600
+ Y
Sbjct: 233 QVYIQY 238
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
Methyltransferase {Paramecium bursaria chlorella virus
1, PBCV-1 [TaxId: 10506]}
Length = 119
Score = 44.0 bits (103), Expect = 5e-06
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 584 LIALVNICKGDIISTTYTQPFWGTMDRRLHLRMSKWIYMKTAMLS-------HNCKPNTK 636
+ A + KG+++ +AM H+ PN +
Sbjct: 18 VFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNAR 77
Query: 637 HVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRR 675
H + +++ + I G+ I+ +Y +W + R
Sbjct: 78 HELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRL 116
Score = 37.9 bits (87), Expect = 8e-04
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 561 AMLSHNCKPNTKHVIVNEDFSLQLIALVNICKGDIISTTYTQPFWGTMDRR 611
A+ +H+ PN +H + +++ + I G+ I+ +Y +W + R
Sbjct: 66 AIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRL 116
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 34.4 bits (79), Expect = 0.005
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA-------DSKIHVLGSYQNVQVALKALSNLI 185
+G + G+GG I+ + +I IA + + G+ ++VQ A + L ++
Sbjct: 16 DGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIV 75
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 33.6 bits (77), Expect = 0.010
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 136 IGRLAGKGGRTKFTIENITKTRIVIADS-KIHVLGSYQNVQVALKALSNLI 185
+ R+ GK G +++ +IV+ + I V G + V +A +A+ +
Sbjct: 12 VPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNGDRRKVSIAEEAIYLIE 62
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 33.3 bits (76), Expect = 0.011
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVI----------ADSKIHVLGSYQNVQVALKALS 182
+G + GKGG+T + +T RI I + ++ + GS Q A +S
Sbjct: 11 ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLIS 70
Query: 183 NLI 185
+
Sbjct: 71 QRV 73
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 32.5 bits (74), Expect = 0.017
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA-------DSKIHVLGSYQNVQVALKALSNLI 185
A+G + G+ G I+N RI + + G Q A + +++L+
Sbjct: 11 RFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLL 70
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 32.4 bits (74), Expect = 0.021
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK-----IHVLGSYQNVQVALKALSNLI 185
+ +G + GK G + + + RI I++ I + G + A + + +
Sbjct: 12 GKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 69
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 32.5 bits (74), Expect = 0.024
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADSK-------IHVLGSYQNVQVALKALSNLI 185
G + GKGG+ I + + I I + I + G+ +Q A L N +
Sbjct: 12 KDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 71
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 32.1 bits (73), Expect = 0.028
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA-------DSKIHVLGSYQNVQVALKALSNLI 185
+ IG + G+ G I ++ +I IA ++ + GS ++ +A ++ +
Sbjct: 10 NNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 69
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 32.0 bits (73), Expect = 0.036
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVI-----ADSKIHVLGSYQNVQVALKALSNLI 185
+ GK G +E T T+I I ++I + G+ + ++ A + +
Sbjct: 18 KEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLIS 75
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 32.1 bits (73), Expect = 0.040
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS------KIHVLGSYQNVQVALKALSNLI 185
R R+ G G+ I + K I S + V G +NV+ A+ + NL
Sbjct: 18 HRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLE 76
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 31.4 bits (71), Expect = 0.045
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIA----------DSKIHVLGSYQNVQVALKALS 182
+ G + GKGG T +I + RI + + G+ Q + A + +
Sbjct: 9 TGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 68
Query: 183 NLI 185
I
Sbjct: 69 EKI 71
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 31.5 bits (71), Expect = 0.090
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS---------KIHVLGSYQNVQVALKALSN 183
R++GR+ G+GG T +I + +I I + G+ + V A +
Sbjct: 23 QRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82
Query: 184 LI 185
+
Sbjct: 83 KV 84
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 30.8 bits (70), Expect = 0.098
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 136 IGRLAGKGGRTKFTIENITKTRIVIADS-KIHVLGSYQNVQVALKALSNLI 185
+ R+ G+ T+E T+ +I +A + +IH+ ++++ +I
Sbjct: 12 VPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIKII 62
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 30.1 bits (68), Expect = 0.14
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLI 185
+ L GK G I++ K + I I + G Q VQ A + L L
Sbjct: 13 HKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 30.1 bits (68), Expect = 0.14
Identities = 8/52 (15%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 136 IGRLAGKGGRTKFTIENITKTRIVIADS-KIHVLGSYQ-NVQVALKALSNLI 185
+ R+ GK T+ + + I +A++ +I + + ++ ++A+ +
Sbjct: 12 VPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIE 63
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 30.2 bits (68), Expect = 0.19
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS--------KIHVLGSYQNVQVALKALSNL 184
+ ++ G+ G I I D +I + G +N + A A+ +
Sbjct: 18 PKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRI 77
Query: 185 I 185
+
Sbjct: 78 V 78
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 29.8 bits (67), Expect = 0.24
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 34 VPVPNHRYGPLKENWMKIFTPIVEHLKLQVRFNLKSRNVEIRLSPETEDISNLQKAADFV 93
V V R G + ++ I+ + + ++ V + E NL KAA+ V
Sbjct: 7 VKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVV 66
Query: 94 KAFVYGFDVDDALALL 109
KA GF + A LL
Sbjct: 67 KAISLGFPPEKAFRLL 82
Score = 27.1 bits (60), Expect = 2.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 136 IGRLAGKGGRTKFTIENITKTRIVI 160
+G + G G K I T T I +
Sbjct: 14 LGAVIGPRGEVKAEIMRRTGTVITV 38
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 29.4 bits (66), Expect = 0.33
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVIADS-----KIHVLGSYQNVQVALKALSNLI 185
+ G+ G + + + I + I + G N+ A L +
Sbjct: 18 FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERV 75
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 29.1 bits (65), Expect = 0.43
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 133 SRAIGRLAGKGGRTKFTIENITKTRIVI---------ADSKIHVLGSYQNVQVALKALSN 183
+ G + GKGG T ++ ++V+ AD + + G VQ A + +
Sbjct: 16 ASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLE 75
Query: 184 LI 185
LI
Sbjct: 76 LI 77
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing
protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 54
Score = 27.5 bits (61), Expect = 0.69
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 317 CEVCKVAASLKCGGCNQVFYCSK----SHQKQHWKEHKPGCAKYK 357
C +C A+L+C GC+ YC++ H KEH+ + Y
Sbjct: 4 CCICNEDATLRCAGCDGDLYCARCFREGHDNFDLKEHQT--SPYH 46
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 29.5 bits (65), Expect = 1.4
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 331 CNQVFYCSKSHQKQHWKEHKPGCAKYKVVRNDILGRHMVATKDIREGEIILEEKPLVVGP 390
C+Q CSK + + + ++ R G + +I+ G+ + ++
Sbjct: 104 CHQGCACSKDCPNRVVERGR--TVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITS 161
Query: 391 KTA 393
+ A
Sbjct: 162 EEA 164
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 26.5 bits (59), Expect = 1.9
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 136 IGRLAGKGGRTKFTIENITKTRIVIAD 162
IG + G + I+ T I I D
Sbjct: 14 IGEVIGPKRQMINQIQEDTGAEITIED 40
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 28.6 bits (63), Expect = 2.0
Identities = 6/69 (8%), Positives = 15/69 (21%), Gaps = 3/69 (4%)
Query: 626 MLSHNCKPN---TKHVIVNEDFSLQLIALVNIRKGDIISTTYTQPFWGTMDRRLHLRMSK 682
+H+ PN V + L + + ++ Y
Sbjct: 101 KANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWY 160
Query: 683 CFDCTCDRC 691
+ +
Sbjct: 161 QVELKAFQA 169
>d1os6a_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Geobacter sulfurreducens, PpcA [TaxId: 35554]}
Length = 71
Score = 26.1 bits (57), Expect = 4.0
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 13/45 (28%)
Query: 382 EEKPLVVGPKTASVPLCLGCHRTLK--PTSMEENEPLSFYKCSDC 424
K G + A C GCH +K PT KC +C
Sbjct: 35 PGKIEGFGKEMAHGKGCKGCHEEMKKGPT-----------KCGEC 68
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 26.6 bits (58), Expect = 4.2
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 13/59 (22%)
Query: 315 GKCEVCKVAASLK------CGGCNQVFYCS-------KSHQKQHWKEHKPGCAKYKVVR 360
G+C VC AS + C GC F + + K + + R
Sbjct: 1 GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCR 59
>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 112
Score = 26.9 bits (59), Expect = 4.5
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 324 ASLKCGGCNQVFYCSKSHQKQHWKEHKPGCA 354
AS+ C +Q S +W +PG +
Sbjct: 19 ASISCKS-SQRLLNSNGKTFLNWLLQRPGQS 48
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 25.4 bits (55), Expect = 7.5
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 316 KCEVCKVAASLK------CGGCNQVFYCSKSHQKQHWKEHKPGCAKYKVVRN 361
C +C AS CG C F + ++++ + C K R
Sbjct: 4 TCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRK 55
>d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide biosynthesis
protein SpsE, C-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 72
Score = 25.0 bits (55), Expect = 7.9
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 362 DILGRHMVATKDIREGEIILEE 383
+ R + T I++GE E+
Sbjct: 4 NFAYRGIFTTAPIQKGEAFSED 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,769,118
Number of extensions: 133863
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 45
Length of query: 766
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 674
Effective length of database: 1,144,436
Effective search space: 771349864
Effective search space used: 771349864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)