BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8225
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 148/357 (41%), Gaps = 47/357 (13%)
Query: 74 VEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILI 133
VE + R+A+ G+Q+GD + LF+ PE+V +LG S G + N L
Sbjct: 55 VELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELA 114
Query: 134 HSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL-----PSTTLLDE 188
K + K +I A E +VKD R+ KV+ P L
Sbjct: 115 KHAKASRAKLLITQACYYE---KVKD-----------FARESDVKVMCVDSAPDGCLHFS 160
Query: 189 ELPEVSA-KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG-- 245
EL + ++P DI P D +A Y+SGTTGLPK ++TH + + +++ +
Sbjct: 161 ELTQADENEAPQVDI---SPDDVVALPYSSGTTGLPKGVMLTH-KGLITSVAQQVDGDNP 216
Query: 246 ---LTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
S+DV+ LP++H + ++I KF + KY ++A
Sbjct: 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAP 276
Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN 360
+ + + P+ + S++M+ G L ++ + + +F R+ + YG TE
Sbjct: 277 VVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG 336
Query: 361 ANLMNA--------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCI 407
L D K GA G + A + DPET + RN+ G +CI
Sbjct: 337 PVLAMCLAFAKEPFDIKPGACGTVVRNA------EMKIVDPETGASLPRNQPGEICI 387
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/420 (23%), Positives = 155/420 (36%), Gaps = 68/420 (16%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
Q+ +NR A+ + G+ +GD VAL M E+ C++ G +K+G VA INT +
Sbjct: 48 QMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEV 107
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD----- 187
+ + K +IYGA + + ++ A+ P T+ D
Sbjct: 108 SFILSDSGSKVVIYGAPSAPVIDAIR------------------AQADPPGTVTDWIGAD 149
Query: 188 ---EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
E L +A P + + D L +YTSGTTG PK V TH A S
Sbjct: 150 SLAERLRSAAADEPAVECGGD---DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI 206
Query: 245 GLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
+ D + LP++H A T++ +F A+ W ++ + +
Sbjct: 207 DVRYRDRLLLPLPMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIGGAV 265
Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRI--CEFYGATE---G 359
+ ++ VPE E + I G + E K + I + Y TE G
Sbjct: 266 PAILNFMRQVPEFAELDAPDFRYFITGG--APMPEALIKIYAAKNIEVVQGYALTESCGG 323
Query: 360 NANLMNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGIL 417
L++ D K G+ G + T +R DG+ E I
Sbjct: 324 GTLLLSEDALRKAGSAG---------------RATMFTDVAVRGDDGVIREHGEGEVVI- 367
Query: 418 IGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+++ Y ++ + + N + F TGDI D Y Y KDR D
Sbjct: 368 -------KSDILLKEYWNRPEATRDAFDNGW------FRTGDIGEIDDEGYLYIKDRLKD 414
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 30/268 (11%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
Q+ +NR A+ + G+ +GD VAL M E+ C++ G +K+G VA INT +
Sbjct: 34 QMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEV 93
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD----- 187
+ + K +IYGA + + ++ A+ P T+ D
Sbjct: 94 SFILSDSGSKVVIYGAPSAPVIDAIR------------------AQADPPGTVTDWIGAD 135
Query: 188 ---EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
E L +A P + + D L +YTSGTTG PK V TH A S
Sbjct: 136 SLAERLRSAAADEPAVECGGD---DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI 192
Query: 245 GLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
+ D + LP++H A T++ +F A+ W ++ + +
Sbjct: 193 DVRYRDRLLLPLPMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIGGAV 251
Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMIGNG 332
+ ++ VPE E + I G
Sbjct: 252 PAILNFMRQVPEFAELDAPDFRYFITGG 279
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 152/407 (37%), Gaps = 51/407 (12%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
+ R+AN ++GLQ GD VA E E + ++L + G V +NT H L + I
Sbjct: 38 AGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFIT 97
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
AE K ++ + + + + G ++ G P + L + +A +
Sbjct: 98 DAEPKIVVCDPSKRDGIAAIAAKV-GATVETLG----PDGR---------GSLTDAAAGA 143
Query: 198 PTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTL 256
++ +D LA I YTSGTTG K A ++H +++ T DDV+ L
Sbjct: 144 SEAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHAL 203
Query: 257 PLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE 316
P+YHT + + KF + TV + LL P
Sbjct: 204 PIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTRLLQSPR 261
Query: 317 KPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNANLMN---ADGKVG 371
++T ++ I L + + G + E YG TE N N N D G
Sbjct: 262 LTKETTGHXRLFISGSAPLLADTHREWSAKTG-HAVLERYGXTETNXNTSNPYDGDRVPG 320
Query: 372 AVGYIPYIAIPFYP-VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF 430
AVG P P V DPET + + D IG I E + + F
Sbjct: 321 AVG-------PALPGVSARVTDPETGKELPRGD--------------IGXI-EVKGPNVF 358
Query: 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
GY K R+ D F TGD+ D+ Y + R D
Sbjct: 359 KGYWRXPEKTKSEFRD-----DGFFITGDLGKIDERGYVHILGRGKD 400
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/413 (22%), Positives = 158/413 (38%), Gaps = 43/413 (10%)
Query: 77 HSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSI 136
+S++ ANFF G+ +GD V L ++ + ++ LGL K+G +A + +++ I
Sbjct: 95 YSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRI 154
Query: 137 KVAECKAIIYGAE--LSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVS 194
+ A K I+ AE + E + E I L A K VL +EL E S
Sbjct: 155 EKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKA----KVGGDVLEGWIDFRKELEESS 210
Query: 195 A--KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
+ PT ++ L Y ++SGT G PK + + ++ +Y + D +
Sbjct: 211 PIFERPTGEVSTKNEDICLVY-FSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH 269
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVI--RSKFSASNFWKDCIKYNCTVAQYIGEMCRY 310
YT V + +F A N + KY T + R+
Sbjct: 270 YTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRF 329
Query: 311 LLAVPEKPEDTQH------SVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
L+ ED H ++ G L P+V+ F + G+ ++ E +G TE
Sbjct: 330 LIK-----EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGI-KLMEGFGQTE------ 377
Query: 365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
V + P++ P + K P + ++DG C+ E G ++ E
Sbjct: 378 ----TVVTIATFPWMEPK--PGSIGKPTPGYKIELMDRDGRL--CEVGEEGEIVINTMEG 429
Query: 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ F Y ++ + Y H TGD+ D+ Y +F R D
Sbjct: 430 KPVGLFVHYGKDPERTEETWHDGYYH------TGDMAWMDEDGYLWFVGRADD 476
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 149/367 (40%), Gaps = 36/367 (9%)
Query: 61 PMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA 120
P Y Y+ V S +IA F G+ + D V L + PE+V +L S G A
Sbjct: 84 PTGHVYTYS---DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATA 140
Query: 121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL 180
N + K + K II A + + +++ + + P +
Sbjct: 141 TAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVP----I 196
Query: 181 PSTTLLDEELPEVSAK-SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH---VRAMFM 236
P L EL + + + S D + P D +A Y+SGTTGLPK ++TH V ++
Sbjct: 197 PEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256
Query: 237 AISGRY-QTGLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIK 295
+ G SDDV+ LP++H + ++I KF + + +
Sbjct: 257 QVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQR 316
Query: 296 YNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMM--IGNGLRP---QVWEPFQKRFGLDRI 350
TVA + + +LA+ + E ++ + + + +G P ++ + +F ++
Sbjct: 317 CKVTVAPMVPPI---VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKL 373
Query: 351 CEFYGATEGNANLMNADG--------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RN 401
+ YG TE L + G K GA G + A + DP+T + + RN
Sbjct: 374 GQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNA------EMKIVDPDTGDSLSRN 427
Query: 402 KDG-LCI 407
+ G +CI
Sbjct: 428 QPGEICI 434
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 161/413 (38%), Gaps = 41/413 (9%)
Query: 73 QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHI 131
++ ++S + AN GLQRGD VA+ + PE+ + LG + G++ +
Sbjct: 78 ELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD 137
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
+++ +++++ KAI+ G E+ + + V P + + + + L LL+E
Sbjct: 138 ILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDG-WLNFKKLLNE--- 193
Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
S T + + A +TSGT+GLPK A ++ A TGL + D+
Sbjct: 194 ----ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
Query: 252 VYTT--LPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
++T + V + KF K Y + +G
Sbjct: 250 MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSY--PIKSMMGAPIV 307
Query: 310 YLLAVPE-----KPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
Y + + + K Q+ V +G L P+ E ++ + GLD I E YG TE M
Sbjct: 308 YRMLLQQDLSSYKFPHLQNCVT--VGESLLPETLENWRAQTGLD-IRESYGQTETGLTCM 364
Query: 365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
+ GY+ A Y V +I +K + P + GI +K
Sbjct: 365 VSKTMKIKPGYMG-TAASCYDVQIID----------DKGNVLPPGTEGDIGI---RVKPI 410
Query: 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
R F+GY D +R + + GD IKD+ YF F R D
Sbjct: 411 RPIGIFSGYVDNPDKTAANIRGDF------WLLGDRGIKDEDGYFQFMGRADD 457
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 161/413 (38%), Gaps = 41/413 (9%)
Query: 73 QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHI 131
++ ++S + AN GLQRGD VA+ + PE+ + LG + G++ +
Sbjct: 78 ELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD 137
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
+++ +++++ KAI+ G E+ + + V P + + + + L LL+E
Sbjct: 138 ILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDG-WLNFKKLLNE--- 193
Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
S T + + A +TSGT+GLPK A ++ A TGL + D+
Sbjct: 194 ----ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
Query: 252 VYTT--LPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
++T + V + KF K Y + +G
Sbjct: 250 MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSY--PIKSMMGAPIV 307
Query: 310 YLLAVPE-----KPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
Y + + + K Q+ V +G L P+ E ++ + GLD I E YG TE M
Sbjct: 308 YRMLLQQDLSSYKFPHLQNCVT--VGESLLPETLENWRAQTGLD-IRESYGQTETGLTCM 364
Query: 365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
+ GY+ A Y V +I +K + P + GI +K
Sbjct: 365 VSKTMKIKPGYMG-TAASCYDVQIID----------DKGNVLPPGTEGDIGI---RVKPI 410
Query: 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
R F+GY D +R + + GD IKD+ YF F R D
Sbjct: 411 RPIGIFSGYVDNPDKTAANIRGDF------WLLGDRGIKDEDGYFQFMGRADD 457
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 93/432 (21%), Positives = 156/432 (36%), Gaps = 74/432 (17%)
Query: 87 SKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAII- 145
S G+++GD VA++M PE + L +S+IG + + + + L I + K +I
Sbjct: 133 SMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVIT 192
Query: 146 -----YGAELSEALTEVKDSI---PGIS--LYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
G ++ E V D++ PG+ L T A P E +
Sbjct: 193 TDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKT 252
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFM---AISGRYQTGLTSDDVV 252
P + P L +YTSG+TG PK + H A ++ ++ RY +DV
Sbjct: 253 YYPCTPVDSEDP---LFLLYTSGSTGAPKG--VQHSTAGYLLGALLTMRYTFDTHQEDVF 307
Query: 253 YTTLPL-YHTAXXXXXXXXXXXXXSTVVIRSKFSASNF--WKDCIKYNCTVAQYIGEMCR 309
+T + + T +T+V + N+ + D I + Y+
Sbjct: 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTAL 367
Query: 310 YLLAVPEKPEDTQHSVKMM-----IGNGLRPQVWEPFQKRFGLDR--ICEFYGATEGNAN 362
LL HS+K + +G + +VWE + ++ G + I + Y TE ++
Sbjct: 368 RLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 427
Query: 363 LMNADGKVGAVGYIPY----IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILI 418
L+ A G P + PF+ + + DP T E +
Sbjct: 428 LVTP----LAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT----------------- 466
Query: 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFN-----------TGDILIKDKFQ 467
SH G KA+ R ++ + D + TGD KDK
Sbjct: 467 ---------SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDG 517
Query: 468 YFYFKDRTGDAC 479
Y + R D
Sbjct: 518 YIWILGRVDDVV 529
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 150/409 (36%), Gaps = 55/409 (13%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
+ R+AN ++GLQ GD VA E E + ++L + G V +NT H L + I
Sbjct: 38 AGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFIT 97
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK--PQAKVLPSTTLLDEELPEVSA 195
AE ++ +D I I+ T P + L + +A
Sbjct: 98 DAEPXIVVCDP-------SXRDGIAAIAAXVGATVETLGPDGR---------GSLTDAAA 141
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
+ ++ +D LA I YTSGTTG A+++H +++ T DDV+
Sbjct: 142 GASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIH 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
LP+YHT +++ F + TV + LL
Sbjct: 202 ALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQS 259
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGL--DRICEFYGATEGNANLMN---ADGK 369
P +T +++ I +G P + + ++ + E YG TE N N N D
Sbjct: 260 PRLTXETTGHMRLFI-SGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRV 318
Query: 370 VGAVGYIPYIAIPFYP-VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES 428
GAVG P P V DPET + D IGMI E +
Sbjct: 319 PGAVG-------PALPGVSARVTDPETGXELPRGD--------------IGMI-EVXGPN 356
Query: 429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
F GY R+ D F TGD+ D+ Y + R D
Sbjct: 357 VFXGYWRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXD 400
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 150/409 (36%), Gaps = 55/409 (13%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
+ R+AN ++GLQ GD VA E E + ++L + G V +NT H L + I
Sbjct: 38 AGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFIT 97
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK--PQAKVLPSTTLLDEELPEVSA 195
AE ++ +D I I+ T P + L + +A
Sbjct: 98 DAEPXIVVCDP-------SXRDGIAAIAAXVGATVETLGPDGR---------GSLTDAAA 141
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
+ ++ +D LA I YTSGTTG A+++H +++ T DDV+
Sbjct: 142 GASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIH 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
LP+YHT +++ F + TV + LL
Sbjct: 202 ALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQS 259
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGL--DRICEFYGATEGNANLMN---ADGK 369
P +T +++ I +G P + + ++ + E YG TE N N N D
Sbjct: 260 PRLTXETTGHMRLFI-SGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRV 318
Query: 370 VGAVGYIPYIAIPFYP-VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES 428
GAVG P P V DPET + D IGMI E +
Sbjct: 319 PGAVG-------PALPGVSARVTDPETGXELPRGD--------------IGMI-EVXGPN 356
Query: 429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
F GY R+ D F TGD+ D+ Y + R D
Sbjct: 357 VFXGYWRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXD 400
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/407 (20%), Positives = 152/407 (37%), Gaps = 39/407 (9%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
S R+A K GL + + E ++ LG IGV A N + L++S+
Sbjct: 65 SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 124
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
+++ + + + + V+ +P I + T + LP +
Sbjct: 125 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP--PGFN 182
Query: 198 PTEDIKKNKPSDK-LAYIY-TSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
+ + ++ DK +A I +SG+TGLPK + H A R + + D +
Sbjct: 183 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 242
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
+ +P +H VV+ +F F + Y A + + +
Sbjct: 243 LSVVPFHH-GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 301
Query: 313 --AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM---NAD 367
+ +K + + G L +V E KRF L I + YG TE + ++ D
Sbjct: 302 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 361
Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
K GAVG + +PF+ ++ D + + + LC+ P I+ G + A
Sbjct: 362 DKPGAVGKV----VPFFEAKVVDLDTGKTLGVNQRGELCV----RGPMIMSGYVNNPEAT 413
Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
N DK D ++GDI D+ ++F+ DR
Sbjct: 414 ---NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDR 442
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/407 (20%), Positives = 152/407 (37%), Gaps = 39/407 (9%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
S R+A K GL + + E ++ LG IGV A N + L++S+
Sbjct: 60 SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 119
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
+++ + + + + V+ +P I + T + LP +
Sbjct: 120 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP--PGFN 177
Query: 198 PTEDIKKNKPSDK-LAYIY-TSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
+ + ++ DK +A I +SG+TGLPK + H A R + + D +
Sbjct: 178 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 237
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
+ +P +H VV+ +F F + Y A + + +
Sbjct: 238 LSVVPFHH-GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 296
Query: 313 --AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM---NAD 367
+ +K + + G L +V E KRF L I + YG TE + ++ D
Sbjct: 297 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 356
Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
K GAVG + +PF+ ++ D + + + LC+ P I+ G + A
Sbjct: 357 DKPGAVGKV----VPFFEAKVVDLDTGKTLGVNQRGELCV----RGPMIMSGYVNNPEAT 408
Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
N DK D ++GDI D+ ++F+ DR
Sbjct: 409 ---NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDR 437
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/407 (20%), Positives = 152/407 (37%), Gaps = 39/407 (9%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
S R+A K GL + + E ++ LG IGV A N + L++S+
Sbjct: 60 SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 119
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
+++ + + + + V+ +P I + T + LP +
Sbjct: 120 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP--PGFN 177
Query: 198 PTEDIKKNKPSDK-LAYIY-TSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
+ + ++ DK +A I +SG+TGLPK + H A R + + D +
Sbjct: 178 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 237
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
+ +P +H VV+ +F F + Y A + + +
Sbjct: 238 LSVVPFHH-GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 296
Query: 313 --AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM---NAD 367
+ +K + + G L +V E KRF L I + YG TE + ++ D
Sbjct: 297 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 356
Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
K GAVG + +PF+ ++ D + + + LC+ P I+ G + A
Sbjct: 357 DKPGAVGKV----VPFFEAKVVDLDTGKTLGVNQRGELCV----RGPMIMSGYVNNPEAT 408
Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
N DK D ++GDI D+ ++F+ DR
Sbjct: 409 ---NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDR 437
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 150/409 (36%), Gaps = 55/409 (13%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
+ R+AN ++GLQ GD VA E E + ++L + G V +NT H L + I
Sbjct: 38 AGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFIT 97
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK--PQAKVLPSTTLLDEELPEVSA 195
AE ++ +D I I+ T P + L + +A
Sbjct: 98 DAEPXIVVCDP-------SXRDGIAAIAAXVGATVETLGPDGR---------GSLTDAAA 141
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
+ ++ +D LA I YTSGTTG A+++H +++ T DDV+
Sbjct: 142 GASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIH 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
LP+YHT +++ F + TV + LL
Sbjct: 202 ALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQS 259
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGL--DRICEFYGATEGNANLMN---ADGK 369
P +T +++ I +G P + + ++ + E YG TE N N N D
Sbjct: 260 PRLTXETTGHMRLFI-SGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRV 318
Query: 370 VGAVGYIPYIAIPFYP-VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES 428
GAVG P P V DPET + D IGMI E +
Sbjct: 319 PGAVG-------PALPGVSARVTDPETGXELPRGD--------------IGMI-EVXGPN 356
Query: 429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
F GY R+ D F TGD+ D+ Y + R D
Sbjct: 357 VFXGYWRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXD 400
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/408 (21%), Positives = 155/408 (37%), Gaps = 41/408 (10%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
S R+A K GL + + E ++ LG IGV A N + L++S+
Sbjct: 65 SVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMN 124
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
+++ + + + + V+ +P I + T + LP +
Sbjct: 125 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP--PGFN 182
Query: 198 PTEDIKKNKPSDK-LAYIY-TSGTTGLPKAAVMTHVRAMFMAISGR----YQTGLTSDDV 251
+ + ++ DK +A I +SG+TGLPK + H RA+ + S + + D
Sbjct: 183 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH-RALAVRFSHARDPIFGNQIAPDTA 241
Query: 252 VYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYL 311
+ + +P +H VV+ +F F + Y A + + +L
Sbjct: 242 ILSVVPFHH-GFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFL 300
Query: 312 L--AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM---NA 366
+ +K + + G L +V E KRF L I + YG TE + ++
Sbjct: 301 AKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKG 360
Query: 367 DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA 426
D K GAVG + +PF+ ++ D + + + L + P I+ G + A
Sbjct: 361 DDKPGAVGKV----VPFFEAKVVDLDTGKTLGVNQRGELSV----RGPMIMSGYVNNPEA 412
Query: 427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
N DK D ++GDI D+ ++F+ DR
Sbjct: 413 T---NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDR 442
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/441 (20%), Positives = 160/441 (36%), Gaps = 72/441 (16%)
Query: 63 TGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122
TG T +V + R+ ++ G+ GD VA ++ + + +G V
Sbjct: 42 TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT 101
Query: 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPS 182
N + + + AE K +++ L + ++ + + + + P+ +
Sbjct: 102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161
Query: 183 TTLLDE----ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF--- 235
L +E +PE +A YT+GTTGLPK V +H RA+
Sbjct: 162 EALGEEADPVRVPERAA---------------CGMAYTTGTTGLPKGVVYSH-RALVLHS 205
Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASN----FWK 291
+A S T L+ DVV +P++H V+ + ++ F
Sbjct: 206 LAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDG 265
Query: 292 DCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVK----MMIGNGLRPQVWEPFQKRFGL 347
+ + + V + YL E T H +K +++G P+ +R G+
Sbjct: 266 EGVTFTAGVPTVWLALADYL-------ESTGHRLKTLRRLVVGGSAAPRSLIARFERMGV 318
Query: 348 DRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI 407
+ + + YG TE + P + F L E ++ K GL I
Sbjct: 319 E-VRQGYGLTETS----------------PVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 361
Query: 408 PC----KAEEPGILIGMIKESRAESHFNG-------YADKKASEKKILRNVYSHGDAAFN 456
P A+E G + ++ E G Y +++A+ + D F
Sbjct: 362 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP------DGFFR 415
Query: 457 TGDILIKDKFQYFYFKDRTGD 477
TGDI + D+ Y KDR D
Sbjct: 416 TGDIAVWDEEGYVEIKDRLKD 436
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/411 (19%), Positives = 151/411 (36%), Gaps = 43/411 (10%)
Query: 76 DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
+ S + ++ GL +AL E E+ + IGV A N L+HS
Sbjct: 60 EKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
+ +++ + + + + V+ ++ I + T + P
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQ 179
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
S + ++ ++ + +SG+TGLPK +TH + R Y ++ V
Sbjct: 180 ASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
T +P +H VV+ +KF F K Y CT + L
Sbjct: 240 LTVVPFHH-GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVI----LVPTLF 294
Query: 313 AVPEKPE-----DTQHSVKMMIGNG-LRPQVWEPFQKRFGLDRICEFYGATEGNANLM-- 364
A+ K E D + V++ G L +V E +RF L + + YG TE + ++
Sbjct: 295 AILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354
Query: 365 -NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE 423
D K GA G + +P + +I D + S + +C+
Sbjct: 355 PEGDDKPGASGKV----VPLFKAKVIDLDTKKSLGPNRRGEVCV---------------- 394
Query: 424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
+ GY + + K+++ + +TGDI D+ ++F+ DR
Sbjct: 395 -KGPMLMKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/411 (19%), Positives = 151/411 (36%), Gaps = 43/411 (10%)
Query: 76 DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
+ S + ++ GL +AL E E+ + IGV A N L+HS
Sbjct: 60 EKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
+ +++ + + + + V+ ++ I + T + P
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQ 179
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
S + ++ ++ + +SG+TGLPK +TH + R Y ++ V
Sbjct: 180 ASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
T +P +H VV+ +KF F K Y CT + L
Sbjct: 240 LTVVPFHH-GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVI----LVPTLF 294
Query: 313 AVPEKPE-----DTQHSVKMMIGNG-LRPQVWEPFQKRFGLDRICEFYGATEGNANLM-- 364
A+ K E D + V++ G L +V E +RF L + + YG TE + ++
Sbjct: 295 AILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354
Query: 365 -NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE 423
D K GA G + +P + +I D + S + +C+
Sbjct: 355 PEGDDKPGASGKV----VPLFKAKVIDLDTKKSLGPNRRGEVCV---------------- 394
Query: 424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
+ GY + + K+++ + +TGDI D+ ++F+ DR
Sbjct: 395 -KGPMLMKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 82/411 (19%), Positives = 151/411 (36%), Gaps = 43/411 (10%)
Query: 76 DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
+ S + ++ GL +AL E E+ + IGV A N L+HS
Sbjct: 60 EKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
+ +++ + + + + V+ ++ I + T + P
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGYQ 179
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
S + ++ ++ + +SG+TGLPK +TH + R Y ++ V
Sbjct: 180 ASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
T +P +H VV+ +KF F K Y CT + L
Sbjct: 240 LTVVPFHH-GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVI----LVPTLF 294
Query: 313 AVPEKPE-----DTQHSVKMMIGNG-LRPQVWEPFQKRFGLDRICEFYGATEGNANLM-- 364
A+ K E D + V++ G L +V E +RF L + + YG TE + ++
Sbjct: 295 AILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354
Query: 365 -NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE 423
D K GA G + +P + +I D + S + +C+
Sbjct: 355 PEGDDKPGASGKV----VPLFKAKVIDLDTKKSLGPNRRGEVCV---------------- 394
Query: 424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
+ GY + + K+++ + +TGDI D+ ++F+ DR
Sbjct: 395 -KGPMLMKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 81 IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
+A + GL+ VA+ + V L L ++G V A +N +K AE
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
+I E++ A+ V + +++ +G+ A+++ L+ + P S P E
Sbjct: 93 LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
D ++ +P+ YTSGTTGLPKAA++ R +FM+ Q GL +VV
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
+PLYH T V+ +F
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEF 231
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 81 IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
+A + GL+ VA+ + V L L ++G V A +N +K AE
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
+I E++ A+ V + +++ +G+ A+++ L+ + P S P E
Sbjct: 93 LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
D ++ +P+ YTSGTTGLPKAA++ R +FM+ Q GL +VV
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
+PLYH T V+ +F
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEF 231
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 81 IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
+A + GL+ VA+ + V L L ++G V A +N +K AE
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
+I E++ A+ V + +++ +G+ A+++ L+ + P S P E
Sbjct: 93 LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
D ++ +P+ YTSGTTGLPKAA++ R +FM+ Q GL +VV
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
+PLYH T V+ +F
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEF 231
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 81 IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
+A + GL+ VA+ + V L L ++G V A +N +K AE
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
+I E++ A+ V + +++ +G+ A+++ L+ + P S P E
Sbjct: 93 LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
D ++ +P+ YTSGTTGLPKAA++ R +FM+ Q GL +VV
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
+PLYH T V+ +F
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEF 231
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 26/186 (13%)
Query: 81 IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
+A + GL+ VA+ + V L L ++G V A +N +K AE
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
+I E++ A+ V + +++ +G+ A+++ L+ + P S P E
Sbjct: 93 LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
D ++ +P+ YTSGTTGLPKAA++ R +FM+ Q GL +VV
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYH 260
+PLYH
Sbjct: 202 LMPLYH 207
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/405 (20%), Positives = 144/405 (35%), Gaps = 38/405 (9%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R+A K GL +A+ E ++ G IGV A N + L +S+ ++
Sbjct: 96 RLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSIS 155
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT 199
+ + + + V+ +P I R+ + ++ LP +
Sbjct: 156 QPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDY 215
Query: 200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVVYTTL 256
++ + + +SG+TGLPK +TH R + + D + T +
Sbjct: 216 IPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVI 275
Query: 257 PLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLA--- 313
P +H +V+ +F F + Y A + + +
Sbjct: 276 PFHH-GFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL 334
Query: 314 VPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM----NADGK 369
V + H + G L +V E KRF L I + YG TE + ++ D K
Sbjct: 335 VDKYDLSNLHEIASG-GAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDK 393
Query: 370 VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429
GA G + +PF+ ++ D + + + LC+ + P I+ G + A S
Sbjct: 394 PGACGKV----VPFFSAKIVDLDTGKTLGVNQRGELCV----KGPMIMKGYVNNPEATSA 445
Query: 430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
DK D ++GDI DK YF+ DR
Sbjct: 446 L---IDK---------------DGWLHSGDIAYYDKDGYFFIVDR 472
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 16/309 (5%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
++E+ + R A+ ++ G+ + + L M +LG GVV NT
Sbjct: 53 ELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADY 112
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLPSTTLLDEEL 190
++ + + +A+I L + +T+ +S G L + R P L EEL
Sbjct: 113 VYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE-----PRLAPLFEEL 167
Query: 191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGLTSD 249
+ A +P D ++Y+SG+TG PK V TH + A + + G+ +
Sbjct: 168 --IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEN 225
Query: 250 DVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMC 308
DVV++ L+ +T ++ + + +A + +++ TV + +
Sbjct: 226 DVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
Query: 309 RYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA 366
+L P P ++++ G L ++ E F FG + I + G+TE ++
Sbjct: 286 ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEMLHIFLS- 343
Query: 367 DGKVGAVGY 375
+ GAV Y
Sbjct: 344 -NRAGAVEY 351
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 81 IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
+A + GL+ VA+ + V L L ++G V A +N +K AE
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
+I E + A+ V + +++ +G+ A+++ L+ + P S P E
Sbjct: 93 LAELIKRGEXTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT--SDDVVYTTLPL 258
D ++ +P+ YTSGTTGLPKAA++ A + Q GL +VV PL
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPL 205
Query: 259 YH 260
YH
Sbjct: 206 YH 207
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 126/331 (38%), Gaps = 51/331 (15%)
Query: 157 VKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYT 216
+ DS P + L P A++ P+ L+ +V A+ + + D +YT
Sbjct: 111 LSDSAPSLVLA------PPDAELPPALGALERVDVDVRARGAVPEDGADD-GDPALVVYT 163
Query: 217 SGTTGLPKAAVMTHVRAM---FMAISGRYQTGLTSDDVVYTTLPLYHTAXXXXXXXXXXX 273
SGTTG PK AV+ RA+ A++ +Q T +DV+ LPL+H
Sbjct: 164 SGTTGPPKGAVIPR-RALATTLDALADAWQ--WTGEDVLVQGLPLFHVHGLVLGILGPLR 220
Query: 274 XXSTVVIRSKFS---ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIG 330
+V +FS A+ D V + L A PE + + ++ G
Sbjct: 221 RGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSG 280
Query: 331 NGLRP-QVWEPFQKRFGLDRICEFYGATEGNANLMN----ADG--KVGAVGYIPYIAIPF 383
+ P E G R+ E YG TE LMN ADG + G VG + +P
Sbjct: 281 SAALPVHDHERIAAATG-RRVIERYGMTE---TLMNTSVRADGEPRAGTVG----VPLPG 332
Query: 384 YPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKI 443
+ L++ E PI DG +G I + R + F Y ++ +
Sbjct: 333 VELRLVE---EDGTPIAALDGES-----------VGEI-QVRGPNLFTEYLNRPDATAAA 377
Query: 444 LRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
D F TGD+ ++D Y R
Sbjct: 378 FTE-----DGFFRTGDMAVRDPDGYVRIVGR 403
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 32/163 (19%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
++++ +NRIA + G +G VAL+ + E V LG+ K G ++ + +
Sbjct: 494 ELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRI 553
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP--STTLL--DE 188
+ + + ++ E+ E QA LP TTL D+
Sbjct: 554 SYMLADSAAACLLTHQEMKE-----------------------QAAELPYTGTTLFIDDQ 590
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH 230
E A P I N P AYI YTSGTTG PK + TH
Sbjct: 591 TRFEEQASDPATAIDPNDP----AYIMYTSGTTGKPKGNITTH 629
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 78/187 (41%), Gaps = 38/187 (20%)
Query: 87 SKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI----NTNQRQHILIHSIKV---- 138
S L++GD VAL E E+V + G+VA + QR S K+
Sbjct: 67 SLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDS---WSAKLQGLL 123
Query: 139 AECK--AIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK 196
A C+ AII G E + L A T P+ VL + LPE
Sbjct: 124 ASCQPAAIITGDEW-------------LPLVNAATHDNPELHVLSHAWF--KALPEADVA 168
Query: 197 SPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVY 253
+++ P+D +AY+ YTSG+T P+ ++TH V A AIS L D
Sbjct: 169 -----LQRPVPND-IAYLQYTSGSTRFPRGVIITHREVXANLRAIS-HDGIKLRPGDRCV 221
Query: 254 TTLPLYH 260
+ LP YH
Sbjct: 222 SWLPFYH 228
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
+ ++A+ KG+++G+ V + + +YV L ++ IN + L H +
Sbjct: 62 TKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILN 121
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
+E ++ + L E V + ++ G ++V S +
Sbjct: 122 DSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGS------------E 169
Query: 198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP 257
E++K N D YT GTTG PK +TH A+ TGL+ D + P
Sbjct: 170 DFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXP 229
Query: 258 LYHTA 262
+H+A
Sbjct: 230 XFHSA 234
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/408 (20%), Positives = 140/408 (34%), Gaps = 61/408 (14%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
+ R+A+ G+ GD VA+ + E + + ++ IG + +N + +
Sbjct: 41 AERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLG 100
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGI-SLYAAGTRRKPQA--KVLPSTTLLDEELPEVS 194
++ G + + + V S+ G+ YA G P A K L S T PE
Sbjct: 101 DGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSA--PEFG 158
Query: 195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
A +D I+T+ G P+ A+++ + S LT DV
Sbjct: 159 A------------ADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLG 206
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
LPL+H ++ VI +KF + +D + TV M +L
Sbjct: 207 MLPLFHVTGLGLMLTLQQAGGAS-VIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNIL-- 263
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLD--RICEFYGATEGNANLMNADGKVGA 372
+ P + GLD E + AT NA G+
Sbjct: 264 ----------------DQAAPAQLASLRAVTGLDTPETIERFEATCPNATFWATFGQSET 307
Query: 373 VG---YIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE--SRAE 427
G + PY P P+ + + AE+ + G + E R
Sbjct: 308 SGLSTFAPYRDRP----------KSAGRPLFWRTVAVV--DAEDRPLPPGEVGEIVLRGP 355
Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT 475
+ F GY + A+ + RN + H TGD+ D Y ++ R
Sbjct: 356 TVFKGYWNNAAATQHAFRNGWHH------TGDMGRFDADGYLFYAGRA 397
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 14/189 (7%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
S +A KGL +GD + + E+ ++ L K GVV + RQ+ L IK
Sbjct: 65 STNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIK 124
Query: 138 VAECKAIIYGAELSEALT--EVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
+ K +I G+ E + + DS+ ++L P+ ++ + D L +
Sbjct: 125 QIQPKLLI-GSRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQATDFGLLD-WI 175
Query: 196 KSPTEDIK--KNKPSDKLAYIYTS-GTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
++P E + P+D++A+ S G+TG PK TH + + GL S+ +
Sbjct: 176 ETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRL 235
Query: 253 YTTLPLYHT 261
LP H
Sbjct: 236 LCALPAPHN 244
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 58 REVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAV-ALFMEGQPEYVCMWLGLSKI 116
+E+ T Y+ Q++ H+ IA +++G + GD V LF G P + +LG
Sbjct: 35 KELEETXTYE-----QLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYA 88
Query: 117 GVVAAFINTNQRQHILIHSIK-VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKP 175
G +A I ++ +L + + V K +I + + D I + A P
Sbjct: 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVI--------VLXIADHIKKFT--ADELNTNP 138
Query: 176 QAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAM 234
+ +P+ L EL S+ PT IK N +A++ YTSG+T PK ++H +
Sbjct: 139 KFLKIPAIALESIELNRSSSWQPT-SIKSN----DIAFLQYTSGSTXHPKGVXVSH-HNL 192
Query: 235 FMAISGRYQTGLTSDD-VVYTTLPLYH 260
++ + + +D+ ++++ LP +H
Sbjct: 193 LDNLNKIFTSFHXNDETIIFSWLPPHH 219
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 32 LDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSKGL 90
+ LK +I +++ F +T + P+ T+ Q++ S+ IA F S L
Sbjct: 1 MSLKDMIDSIEQ---------FAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLAL 51
Query: 91 QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL 150
V +F + + ++ L+K G ++ + ++ I++A+ II
Sbjct: 52 LAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII----- 106
Query: 151 SEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDK 210
A+ E +I GISL + L E A+ P E K D
Sbjct: 107 --AIEEFPLTIEGISLVS-----------------LSEIESAKLAEMPYERTHSVKGDDN 147
Query: 211 LAYIYTSGTTGLPKAAVMTH 230
I+TSGTTG PK ++H
Sbjct: 148 YYIIFTSGTTGQPKGVQISH 167
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R AN G+++GD VA++M PE L ++IG V + I + I +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK--- 196
+ +I E A SIP + + P + +L ++ +
Sbjct: 179 SSRLVITADEGVRA----GRSIP-LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR 233
Query: 197 -----------SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT 229
SP + D L +YTSG+TG PK + T
Sbjct: 234 DLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R AN G+++GD VA++M PE L ++IG V + I + I +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK--- 196
+ +I E A SIP + + P + +L ++ +
Sbjct: 179 SSRLVITADEGVRA----GRSIP-LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR 233
Query: 197 -----------SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT 229
SP + D L +YTSG+TG PK + T
Sbjct: 234 DLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R AN G+++GD VA++M PE L ++IG V + I + I +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK--- 196
+ +I E A SIP + + P + +L ++ +
Sbjct: 179 SSRLVITADEGVRA----GRSIP-LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR 233
Query: 197 -----------SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT 229
SP + D L +YTSG+TG PK + T
Sbjct: 234 DLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R AN G+++GD VA++M PE L ++IG V + I + I +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK--- 196
+ +I E A SIP + + P + +L ++ +
Sbjct: 179 SSRLVITADEGVRA----GRSIP-LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR 233
Query: 197 -----------SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT 229
SP + D L +YTSG+TG PK + T
Sbjct: 234 DLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R AN G+++GD VA++M PE L ++IG V + I + I +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK--- 196
+ +I E A SIP + + P + +L ++ +
Sbjct: 179 SSRLVITADEGVRA----GRSIP-LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR 233
Query: 197 -----------SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT 229
SP + D L +YTSG+TG PK + T
Sbjct: 234 DLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R AN G+++GD VA++M PE L ++IG V + I + I +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDS 178
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK--- 196
+ +I E A SIP + + P + +L ++ +
Sbjct: 179 SSRLVITADEGVRA----GRSIP-LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR 233
Query: 197 -----------SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT 229
SP + D L +YTSG+TG PK + T
Sbjct: 234 DLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R AN G+++GD VA++M PE L ++IG V + I + I +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK--- 196
+ +I E A SIP + + P + +L ++ +
Sbjct: 179 SSRLVITADEGVRAGA----SIP-LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR 233
Query: 197 -----------SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT 229
SP + D L +YTSG+TG PK + T
Sbjct: 234 DLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 24/197 (12%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+++ ++R+A F+ G+Q+ D V + + E+ + L ++G + F + R +
Sbjct: 55 ELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEI 114
Query: 133 IHSIKVAECKAIIY-----GAELSEALTEVKDSIPGI-SLYAAGTRRKPQAKVLPSTTLL 186
+ + AE A I G + +V+ +P + ++ AG + LP L
Sbjct: 115 TYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGE----AEEFLPLEDLH 170
Query: 187 DE--ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
E +LPEV K SD + G+TGL K TH ++
Sbjct: 171 TEPVKLPEV------------KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218
Query: 245 GLTSDDVVYTTLPLYHT 261
L V LP+ H
Sbjct: 219 WLDHSTVYLAALPMAHN 235
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 49/176 (27%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+++ S+ +A ++G++ GD VAL M E + L + K G AA++ + R +
Sbjct: 65 RLDAWSDAVARTLLAEGVRPGDRVALRMSPGAEAIVAILAILKCG--AAYVPVDLRNPVS 122
Query: 133 IHSIKVAECKAIIYGAELSE-----------ALTEVKDSIPGISLYAAGTRRKPQAKVLP 181
+A+ A E E A+ E KD+ PG
Sbjct: 123 RSDFILADSGASALIGEPHEGCAVTRVVRTAAVAECKDAEPG------------------ 164
Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAMFM 236
P A P ++ +AY IYTSGTTG PK + H + +
Sbjct: 165 ---------PVTGAPGPG--------AEDMAYVIYTSGTTGNPKGVPVRHANVLAL 203
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 24/197 (12%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+++ ++R+A F+ G+Q+ D V + + E+ + L ++G + F + R +
Sbjct: 55 ELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEI 114
Query: 133 IHSIKVAECKAIIY-----GAELSEALTEVKDSIPGI-SLYAAGTRRKPQAKVLPSTTLL 186
+ + AE A I G + +V+ +P + ++ AG + LP L
Sbjct: 115 TYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGE----AEEFLPLEDLH 170
Query: 187 DE--ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
E +LPEV K SD + G+TGL K TH ++
Sbjct: 171 TEPVKLPEV------------KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218
Query: 245 GLTSDDVVYTTLPLYHT 261
L V LP H
Sbjct: 219 WLDHSTVYLAALPXAHN 235
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 171 TRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKN-KPSDKLAYIYTSGTTGLPKAAVMT 229
T R ++ +TTL E+ E ++ +P ++ P D ++TSG+TG PK VM+
Sbjct: 178 TSRPLSGRLTGTTTLYVED--EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPK-GVMS 234
Query: 230 HVRAMFMAISGRYQTGLTSDDVVYTTLPL 258
RA+ G+ G D+V P+
Sbjct: 235 PHRALTGTYLGQDYAGFGPDEVFLQCSPV 263
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 171 TRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKN-KPSDKLAYIYTSGTTGLPKAAVMT 229
T R ++ +TTL E+ E ++ +P ++ P D ++TSG+TG PK VM+
Sbjct: 178 TSRPLSGRLTGTTTLYVED--EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPK-GVMS 234
Query: 230 HVRAMFMAISGRYQTGLTSDDVVYTTLPL 258
RA+ G+ G D+V P+
Sbjct: 235 PHRALTGTYLGQDYAGFGPDEVFLQCSPV 263
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT---NQRQ 129
++ + +N++AN L G A+A+ ++ + +G+ K G I N R+
Sbjct: 60 KLNETANQVANLIIHASLH-GRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPNDRK 118
Query: 130 HILIHSIKVAE---CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
L+ + A C G EL P+ KVL +
Sbjct: 119 SFLLRDSRAAXAFVCDNNFDGVEL-----------------------PPETKVLDTK--- 152
Query: 187 DEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAA-VMTHVRAMFMAISGR 241
++ E + T DI N P + AY+ YTSG+TG PK V H + F G+
Sbjct: 153 NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGK 209
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 193 VSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
V +SP+ + + D +A I +TSGTTG KA T AI + G D
Sbjct: 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTN 206
Query: 252 VYTTLPLYHTA 262
+ LP+YH +
Sbjct: 207 WLSVLPIYHIS 217
>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
Muramidase/transglycosylase Using Warp
Length = 320
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 62 MTGAYK-YTVTFQVEDHSN---------RIANFFKSKGLQRGDAVALFMEGQ 103
M +YK Y V F + H N +AN+FK+ G +GD VA+ GQ
Sbjct: 186 MPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQ 237
>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
Transglycosylase Slt35 From Escherichia Coli
pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From Escherichia
Coli In Complex With N-Acetylglucosamine
pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycosylase Slt35
pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycoyslase Slt35 In Complex With Calcium
pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Two Murodipeptides
(Glcnac-Murnac-L-Ala-D-Glu)
pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A
pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A And (Glcnac)2
Length = 322
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 62 MTGAYK-YTVTFQVEDHSN---------RIANFFKSKGLQRGDAVALFMEGQ 103
M +YK Y V F + H N +AN+FK+ G +GD VA+ GQ
Sbjct: 188 MPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQ 239
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 208 SDKLAYI-YTSGTTGLPKAAVMTHV 231
+D++AYI ++SGTTG PKA TH
Sbjct: 163 ADQIAYINFSSGTTGRPKAIACTHA 187
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 289 FWKDCIKYNCTVAQYIGEMCRYLL-AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGL 347
F KD IKY +QY + + LL VPE+ +DT V M++G G P V +
Sbjct: 327 FEKDPIKY----SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQA 382
Query: 348 DRICEFYGATEGNAN 362
DR + Y A E N N
Sbjct: 383 DRRIKLY-AVEKNPN 396
>pdb|3RGM|A Chain A, Crystal Structure Of Spin-Labeled Btub T156r1
Length = 594
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 158 KDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE---------LPEVSAKSPTEDIKKNKPS 208
+D+ P + A +P++ VL TT++ + + +V + P DI +N S
Sbjct: 1 QDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGS 60
Query: 209 DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG 240
+L+ I+ GT ++ VR +SG
Sbjct: 61 GQLSSIFIRGTNASHVLVLIDGVRLNLAGVSG 92
>pdb|3RGN|A Chain A, Crystal Structure Of Spin-Labeled Btub W371r1
Length = 594
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 158 KDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE---------LPEVSAKSPTEDIKKNKPS 208
+D+ P + A +P++ VL TT++ + + +V + P DI +N S
Sbjct: 1 QDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGS 60
Query: 209 DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG 240
+L+ I+ GT ++ VR +SG
Sbjct: 61 GQLSSIFIRGTNASHVLVLIDGVRLNLAGVSG 92
>pdb|1NQE|A Chain A, Outer Membrane Cobalamin Transporter (btub) From E. Coli
pdb|1NQG|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium
pdb|1NQH|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium And Cyanocobalamin (Vitamin B12)
Substrate
pdb|1UJW|A Chain A, Structure Of The Complex Between Btub And Colicin E3
Receptor Binding Domain
pdb|2GUF|A Chain A, In Meso Crystal Structure Of The Cobalamin Transporter,
Btub
pdb|2YSU|A Chain A, Structure Of The Complex Between Btub And Colicin E2
Receptor Binding Domain
Length = 594
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 158 KDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE---------LPEVSAKSPTEDIKKNKPS 208
+D+ P + A +P++ VL TT++ + + +V + P DI +N S
Sbjct: 1 QDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGS 60
Query: 209 DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG 240
+L+ I+ GT ++ VR +SG
Sbjct: 61 GQLSSIFIRGTNASHVLVLIDGVRLNLAGVSG 92
>pdb|1NQF|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
Methionine Substiution Construct For Se-Met Sad Phasing
Length = 594
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 158 KDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE---------LPEVSAKSPTEDIKKNKPS 208
+D+ P + A +P++ VL TT++ + + +V + P DI +N S
Sbjct: 1 QDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGS 60
Query: 209 DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG 240
+L+ I+ GT ++ VR +SG
Sbjct: 61 GQLSSIFIRGTNASHVLVLIDGVRLNLAGVSG 92
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 208 SDKLAY-IYTSGTTGLPKAAVMTH 230
S LAY IYTSGTTG PK ++ H
Sbjct: 181 STDLAYVIYTSGTTGNPKGTMLEH 204
>pdb|3M8B|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 In The Apo
State
pdb|3M8D|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 With Bound
Calcium And Cyanocobalamin
Length = 594
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 158 KDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE---------LPEVSAKSPTEDIKKNKPS 208
+D+ P + A +P++ VL TT++ + + +V + P DI +N S
Sbjct: 1 QDTSPDTLVCTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGS 60
Query: 209 DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG 240
+L+ I+ GT ++ VR +SG
Sbjct: 61 GQLSSIFIRGTNASHVLVLIDGVRLNLAGVSG 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,879,022
Number of Sequences: 62578
Number of extensions: 570674
Number of successful extensions: 1273
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 84
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)