Query psy8225
Match_columns 479
No_of_seqs 205 out of 1906
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 21:54:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 3E-64 1E-68 512.0 37.5 396 47-479 22-437 (536)
2 3rix_A Luciferase, luciferin 4 100.0 3.2E-63 1.1E-67 506.0 39.6 403 45-479 18-442 (550)
3 3etc_A AMP-binding protein; ad 100.0 7.3E-63 2.5E-67 504.9 40.6 419 29-479 35-478 (580)
4 3o83_A Peptide arylation enzym 100.0 8.8E-63 3E-67 501.8 36.2 400 43-479 26-442 (544)
5 4fuq_A Malonyl COA synthetase; 100.0 2.8E-62 9.6E-67 493.3 37.4 388 50-479 3-402 (503)
6 3g7s_A Long-chain-fatty-acid-- 100.0 1E-62 3.5E-67 502.1 33.9 398 46-479 18-442 (549)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.6E-62 8.7E-67 497.8 35.6 394 45-479 23-433 (539)
8 2d1s_A Luciferase, luciferin 4 100.0 8.6E-62 2.9E-66 494.7 38.6 400 47-479 25-444 (548)
9 1v25_A Long-chain-fatty-acid-C 100.0 1.8E-61 6.2E-66 491.8 37.0 393 45-479 16-438 (541)
10 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.5E-61 8.5E-66 487.0 37.3 387 47-479 2-405 (504)
11 3r44_A Fatty acyl COA syntheta 100.0 7.4E-62 2.5E-66 491.9 32.6 391 43-479 12-416 (517)
12 1ry2_A Acetyl-coenzyme A synth 100.0 4.4E-61 1.5E-65 498.6 38.5 407 46-479 81-529 (663)
13 1pg4_A Acetyl-COA synthetase; 100.0 3.8E-61 1.3E-65 499.0 37.7 405 47-479 76-520 (652)
14 3ivr_A Putative long-chain-fat 100.0 9E-61 3.1E-65 483.8 38.9 390 45-479 4-403 (509)
15 3c5e_A Acyl-coenzyme A synthet 100.0 2E-60 6.9E-65 486.2 39.2 396 47-479 38-459 (570)
16 2v7b_A Benzoate-coenzyme A lig 100.0 2.5E-60 8.5E-65 482.8 38.0 397 46-479 23-432 (529)
17 3tsy_A Fusion protein 4-coumar 100.0 1.4E-60 4.8E-65 517.2 37.6 405 46-479 60-484 (979)
18 1amu_A GRSA, gramicidin synthe 100.0 2.2E-60 7.7E-65 485.2 34.2 379 47-479 39-433 (563)
19 3t5a_A Long-chain-fatty-acid-- 100.0 2.2E-60 7.7E-65 478.1 33.2 391 45-474 22-480 (480)
20 3fce_A D-alanine--poly(phospho 100.0 1.2E-60 4E-65 483.3 31.3 384 48-479 2-402 (512)
21 4gr5_A Non-ribosomal peptide s 100.0 8.1E-60 2.8E-64 482.7 34.1 380 47-479 75-472 (570)
22 3rg2_A Enterobactin synthase c 100.0 2.1E-59 7.3E-64 483.7 36.5 397 43-479 23-437 (617)
23 3l8c_A D-alanine--poly(phospho 100.0 7.7E-60 2.6E-64 478.5 32.0 384 47-479 4-406 (521)
24 3kxw_A Saframycin MX1 syntheta 100.0 1E-59 3.6E-64 485.1 33.4 391 45-479 9-461 (590)
25 4dg8_A PA1221; ANL superfamily 100.0 2.1E-59 7.1E-64 482.0 34.4 381 45-479 25-422 (620)
26 3e7w_A D-alanine--poly(phospho 100.0 3.6E-59 1.2E-63 472.1 34.6 381 48-479 2-401 (511)
27 3gqw_A Fatty acid AMP ligase; 100.0 6.6E-58 2.3E-62 470.6 36.3 384 46-479 20-464 (576)
28 3ipl_A 2-succinylbenzoate--COA 100.0 1.8E-58 6E-63 466.3 27.4 387 48-479 2-401 (501)
29 3ite_A SIDN siderophore synthe 100.0 2.6E-57 9E-62 464.0 29.4 384 45-479 18-430 (562)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 1.5E-57 5E-62 458.9 22.2 375 46-479 21-409 (505)
31 2vsq_A Surfactin synthetase su 100.0 1.7E-55 5.8E-60 488.9 32.4 383 47-479 464-864 (1304)
32 3qov_A Phenylacetate-coenzyme 100.0 3.8E-35 1.3E-39 290.5 18.7 234 205-479 82-334 (436)
33 4gs5_A Acyl-COA synthetase (AM 100.0 3.5E-35 1.2E-39 281.9 15.5 213 207-479 36-253 (358)
34 2y27_A Phenylacetate-coenzyme 100.0 1.4E-33 4.7E-38 279.3 19.4 235 204-479 86-336 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 1.2E-33 4.2E-38 280.2 18.8 235 204-479 88-338 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.5E-30 8.5E-35 250.1 14.4 202 205-421 88-320 (369)
37 4eql_A 4-substituted benzoates 98.0 1.3E-05 4.5E-10 79.7 8.8 123 322-478 296-427 (581)
38 4b2g_A GH3-1 auxin conjugating 97.8 8.2E-05 2.8E-09 74.2 9.6 123 322-479 301-440 (609)
39 4epl_A Jasmonic acid-amido syn 97.7 8.8E-05 3E-09 73.6 8.2 125 322-478 301-434 (581)
40 2y27_A Phenylacetate-coenzyme 93.4 0.62 2.1E-05 44.9 11.8 96 60-156 88-198 (437)
41 2y4o_A Phenylacetate-coenzyme 93.1 0.72 2.5E-05 44.6 11.7 96 60-156 90-200 (443)
42 3qov_A Phenylacetate-coenzyme 92.8 0.54 1.9E-05 45.3 10.3 95 62-157 86-195 (436)
43 3ipl_A 2-succinylbenzoate--COA 86.7 9 0.00031 37.4 13.5 108 59-170 160-282 (501)
44 3hgu_A EHPF; phenazine, antibi 85.4 3.2 0.00011 38.7 9.2 93 60-154 89-219 (369)
45 1mdb_A 2,3-dihydroxybenzoate-A 84.6 12 0.0004 37.0 13.2 107 60-170 180-306 (539)
46 3r44_A Fatty acyl COA syntheta 84.0 11 0.00039 36.9 12.7 107 60-171 168-293 (517)
47 2d1s_A Luciferase, luciferin 4 81.6 6.4 0.00022 39.0 9.9 93 62-156 192-299 (548)
48 3o83_A Peptide arylation enzym 80.7 12 0.0004 37.1 11.5 93 60-156 189-297 (544)
49 1t5h_X 4-chlorobenzoyl COA lig 80.7 14 0.00048 36.0 11.9 94 60-157 151-261 (504)
50 3rg2_A Enterobactin synthase c 77.7 26 0.00091 35.1 13.2 108 60-171 182-311 (617)
51 4gs5_A Acyl-COA synthetase (AM 76.2 6.7 0.00023 36.4 7.7 91 60-156 35-139 (358)
52 3fce_A D-alanine--poly(phospho 74.9 12 0.00041 36.6 9.5 93 59-154 141-249 (512)
53 3kxw_A Saframycin MX1 syntheta 74.8 11 0.00038 37.6 9.4 94 60-156 165-276 (590)
54 3e7w_A D-alanine--poly(phospho 74.0 13 0.00046 36.3 9.6 94 60-156 141-250 (511)
55 3rix_A Luciferase, luciferin 4 73.9 11 0.00037 37.4 8.9 109 61-170 189-315 (550)
56 3ivr_A Putative long-chain-fat 71.4 30 0.001 33.6 11.5 83 226-310 30-116 (509)
57 1pg4_A Acetyl-COA synthetase; 71.3 34 0.0011 34.7 12.1 109 60-170 254-386 (652)
58 3g7s_A Long-chain-fatty-acid-- 69.8 51 0.0017 32.4 12.8 101 206-310 32-137 (549)
59 3ni2_A 4-coumarate:COA ligase; 68.4 34 0.0012 33.6 11.1 95 206-309 35-133 (536)
60 3tbh_A O-acetyl serine sulfhyd 67.2 29 0.001 31.7 9.6 66 84-149 61-127 (334)
61 3ite_A SIDN siderophore synthe 67.2 22 0.00076 35.1 9.6 101 70-170 195-302 (562)
62 3nyq_A Malonyl-COA ligase; A/B 65.1 39 0.0013 32.8 10.8 92 60-156 153-259 (505)
63 3c5e_A Acyl-coenzyme A synthet 64.3 40 0.0014 33.4 10.8 99 206-310 56-159 (570)
64 1v25_A Long-chain-fatty-acid-C 64.2 47 0.0016 32.6 11.2 84 225-310 45-132 (541)
65 3t5a_A Long-chain-fatty-acid-- 63.5 82 0.0028 30.1 12.7 102 206-312 37-147 (480)
66 1ry2_A Acetyl-coenzyme A synth 63.4 56 0.0019 33.1 11.8 96 206-306 95-195 (663)
67 1amu_A GRSA, gramicidin synthe 62.9 73 0.0025 31.4 12.4 83 226-310 63-149 (563)
68 2v7b_A Benzoate-coenzyme A lig 62.9 41 0.0014 32.8 10.5 81 227-309 48-132 (529)
69 4dg8_A PA1221; ANL superfamily 61.6 34 0.0012 34.4 9.7 108 60-171 162-285 (620)
70 3etc_A AMP-binding protein; ad 61.2 69 0.0024 31.8 11.8 94 206-305 69-166 (580)
71 3vc3_A Beta-cyanoalnine syntha 59.9 37 0.0013 31.1 8.9 71 79-149 72-142 (344)
72 4fuq_A Malonyl COA synthetase; 56.9 52 0.0018 31.9 9.9 79 227-307 28-110 (503)
73 4gr5_A Non-ribosomal peptide s 54.5 86 0.0029 30.9 11.2 79 227-307 100-182 (570)
74 4aec_A Cysteine synthase, mito 53.8 1.1E+02 0.0036 29.2 11.0 64 85-148 165-229 (430)
75 2q3b_A Cysteine synthase A; py 52.9 1.1E+02 0.0038 27.4 10.8 64 85-149 58-122 (313)
76 4eez_A Alcohol dehydrogenase 1 50.1 1E+02 0.0034 28.0 10.2 62 84-148 155-216 (348)
77 2pqm_A Cysteine synthase; OASS 49.6 1.2E+02 0.0041 27.6 10.6 65 84-149 68-133 (343)
78 1z7w_A Cysteine synthase; tran 47.7 1E+02 0.0035 27.8 9.7 65 85-149 57-122 (322)
79 1y7l_A O-acetylserine sulfhydr 47.6 1.3E+02 0.0044 26.9 10.4 64 85-149 53-117 (316)
80 3tsy_A Fusion protein 4-coumar 45.2 58 0.002 34.8 8.7 93 206-307 74-170 (979)
81 3gqw_A Fatty acid AMP ligase; 45.1 1.1E+02 0.0039 29.9 10.4 83 226-310 48-141 (576)
82 2egu_A Cysteine synthase; O-ac 45.0 1.2E+02 0.0042 27.0 9.7 64 85-149 56-120 (308)
83 3dwg_A Cysteine synthase B; su 42.3 1.8E+02 0.0063 26.1 10.5 63 85-148 64-127 (325)
84 2v03_A Cysteine synthase B; py 41.6 1.5E+02 0.0051 26.4 9.7 62 86-148 53-115 (303)
85 3l8c_A D-alanine--poly(phospho 41.1 76 0.0026 30.8 8.3 77 227-305 29-109 (521)
86 1ve1_A O-acetylserine sulfhydr 41.1 1.9E+02 0.0066 25.6 10.7 64 85-149 51-117 (304)
87 3ju7_A Putative PLP-dependent 41.1 85 0.0029 29.0 8.3 65 80-147 65-136 (377)
88 4h1h_A LMO1638 protein; MCCF-l 37.3 61 0.0021 29.5 6.3 59 89-147 8-85 (327)
89 3tqh_A Quinone oxidoreductase; 36.8 1.1E+02 0.0038 27.4 8.1 59 84-147 144-203 (321)
90 3l6b_A Serine racemase; pyrido 36.8 85 0.0029 28.7 7.3 58 92-150 75-132 (346)
91 3sr3_A Microcin immunity prote 36.2 65 0.0022 29.4 6.3 60 89-148 9-87 (336)
92 3two_A Mannitol dehydrogenase; 34.8 1.2E+02 0.004 27.6 8.0 59 83-145 167-225 (348)
93 1h2b_A Alcohol dehydrogenase; 33.1 1.6E+02 0.0055 26.8 8.7 63 83-148 175-239 (359)
94 1zsy_A Mitochondrial 2-enoyl t 32.9 1.3E+02 0.0046 27.4 8.1 63 84-147 158-223 (357)
95 3tla_A MCCF; serine protease, 32.1 74 0.0025 29.5 6.0 59 89-147 39-116 (371)
96 2prs_A High-affinity zinc upta 31.9 86 0.003 27.7 6.3 100 52-156 132-239 (284)
97 3gi1_A LBP, laminin-binding pr 31.2 1E+02 0.0035 27.3 6.6 114 51-169 136-257 (286)
98 4e5s_A MCCFLIKE protein (BA_56 31.2 79 0.0027 28.8 6.0 59 89-147 8-85 (331)
99 3s2e_A Zinc-containing alcohol 31.1 1.5E+02 0.005 26.8 8.0 62 83-148 157-218 (340)
100 3nvb_A Uncharacterized protein 30.0 2.4E+02 0.0083 26.2 9.1 90 75-169 258-356 (387)
101 3jv7_A ADH-A; dehydrogenase, n 29.3 1.5E+02 0.0051 26.8 7.7 62 84-148 161-224 (345)
102 2o1e_A YCDH; alpha-beta protei 28.9 82 0.0028 28.3 5.7 101 51-154 147-253 (312)
103 3ezx_A MMCP 1, monomethylamine 28.8 1.1E+02 0.0036 25.8 6.0 81 260-341 105-195 (215)
104 1o69_A Aminotransferase; struc 28.2 2.1E+02 0.0071 26.3 8.7 61 84-147 63-129 (394)
105 2vsq_A Surfactin synthetase su 27.9 1.1E+02 0.0038 33.9 7.6 92 60-155 605-712 (1304)
106 4h27_A L-serine dehydratase/L- 27.8 1.3E+02 0.0045 27.7 7.0 54 95-149 95-148 (364)
107 3hvy_A Cystathionine beta-lyas 27.5 2.4E+02 0.0084 26.5 9.0 68 80-148 104-184 (427)
108 1o58_A O-acetylserine sulfhydr 27.2 3.2E+02 0.011 24.1 10.3 63 84-149 57-120 (303)
109 3fpc_A NADP-dependent alcohol 27.1 1.6E+02 0.0055 26.7 7.5 60 84-147 158-218 (352)
110 2jtq_A Phage shock protein E; 26.6 1.5E+02 0.0051 20.0 6.1 33 86-118 34-66 (85)
111 4ej6_A Putative zinc-binding d 26.5 3.1E+02 0.011 25.0 9.5 59 84-146 174-233 (370)
112 1mdo_A ARNB aminotransferase; 26.3 1.6E+02 0.0055 26.9 7.6 61 83-147 69-134 (393)
113 3ijw_A Aminoglycoside N3-acety 26.3 49 0.0017 29.0 3.5 24 79-102 18-41 (268)
114 1toa_A Tromp-1, protein (perip 26.0 1.3E+02 0.0044 27.1 6.4 96 55-153 156-259 (313)
115 3hh8_A Metal ABC transporter s 25.9 62 0.0021 28.9 4.2 95 56-153 143-245 (294)
116 1ofu_X SULA, hypothetical prot 25.6 2.1E+02 0.0072 21.4 7.2 53 82-134 47-101 (119)
117 1xvl_A Mn transporter, MNTC pr 25.5 1.1E+02 0.0038 27.6 5.9 98 54-154 162-267 (321)
118 2rkb_A Serine dehydratase-like 25.3 1.8E+02 0.0061 26.0 7.3 57 93-150 54-110 (318)
119 3ss7_X D-serine dehydratase; t 25.3 2E+02 0.0067 27.4 7.9 56 96-151 162-217 (442)
120 3ri6_A O-acetylhomoserine sulf 25.1 2.3E+02 0.0078 26.7 8.3 55 90-146 118-173 (430)
121 2e7j_A SEP-tRNA:Cys-tRNA synth 24.8 3E+02 0.01 24.7 9.1 55 90-147 90-154 (371)
122 3ujp_A Mn transporter subunit; 24.8 1.2E+02 0.004 27.2 5.9 96 56-154 150-253 (307)
123 2cf5_A Atccad5, CAD, cinnamyl 24.8 1.8E+02 0.006 26.5 7.3 62 84-148 171-233 (357)
124 1pl8_A Human sorbitol dehydrog 24.7 2.2E+02 0.0076 25.8 8.0 60 84-147 163-223 (356)
125 4d9i_A Diaminopropionate ammon 24.6 4.2E+02 0.014 24.5 10.3 58 92-150 110-168 (398)
126 3cx3_A Lipoprotein; zinc-bindi 24.4 68 0.0023 28.4 4.2 99 51-154 134-240 (284)
127 3sma_A FRBF; N-acetyl transfer 24.4 56 0.0019 29.0 3.5 23 79-101 25-47 (286)
128 2nyg_A YOKD protein; PFAM02522 24.3 56 0.0019 28.8 3.5 24 79-102 16-39 (273)
129 1eg5_A Aminotransferase; PLP-d 24.1 2.6E+02 0.0089 25.2 8.5 57 90-147 86-146 (384)
130 3i16_A Aluminum resistance pro 23.6 2.4E+02 0.0081 26.6 8.1 66 82-148 105-184 (427)
131 1gu7_A Enoyl-[acyl-carrier-pro 23.5 1.9E+02 0.0067 26.2 7.4 63 84-147 157-223 (364)
132 3mfq_A TROA, high-affinity zin 23.4 1.2E+02 0.0039 26.9 5.5 99 52-153 119-225 (282)
133 1pq4_A Periplasmic binding pro 23.2 87 0.003 27.8 4.7 98 51-153 147-250 (291)
134 1p5j_A L-serine dehydratase; l 23.0 2E+02 0.0068 26.5 7.3 56 93-149 93-148 (372)
135 1y81_A Conserved hypothetical 22.9 1.8E+02 0.0062 22.2 6.0 49 93-142 70-118 (138)
136 1rjw_A ADH-HT, alcohol dehydro 22.8 2.7E+02 0.0094 24.9 8.2 59 84-146 156-214 (339)
137 4eb5_A Probable cysteine desul 22.7 1.7E+02 0.0057 26.5 6.9 56 91-147 86-145 (382)
138 1oft_A SULA, hypothetical prot 22.6 2.4E+02 0.0082 22.4 6.6 51 82-132 89-141 (161)
139 2zsj_A Threonine synthase; PLP 22.4 2.1E+02 0.0071 26.1 7.3 50 101-150 86-136 (352)
140 3euc_A Histidinol-phosphate am 22.2 4E+02 0.014 23.8 9.4 55 90-147 106-164 (367)
141 3isl_A Purine catabolism prote 21.9 3.4E+02 0.012 24.7 9.0 57 90-147 83-143 (416)
142 3a2b_A Serine palmitoyltransfe 21.8 3.6E+02 0.012 24.5 9.0 54 90-147 124-180 (398)
143 3b8x_A WBDK, pyridoxamine 5-ph 21.7 2.9E+02 0.01 25.1 8.4 54 89-146 76-134 (390)
144 3aey_A Threonine synthase; PLP 21.6 2E+02 0.0067 26.2 6.9 49 101-149 84-133 (351)
145 4a2c_A Galactitol-1-phosphate 21.6 4.3E+02 0.015 23.5 9.8 62 84-148 152-213 (346)
146 2d1f_A Threonine synthase; ami 21.4 2.4E+02 0.0081 25.8 7.5 50 101-150 92-142 (360)
147 2z9v_A Aspartate aminotransfer 21.2 3E+02 0.01 24.9 8.3 57 90-147 80-141 (392)
148 1yqd_A Sinapyl alcohol dehydro 21.1 2.7E+02 0.0091 25.4 7.8 63 83-148 177-240 (366)
149 3krt_A Crotonyl COA reductase; 21.0 2.5E+02 0.0086 26.6 7.8 56 88-147 224-280 (456)
150 1e3j_A NADP(H)-dependent ketos 21.0 2.9E+02 0.01 24.9 8.0 59 84-146 160-218 (352)
151 4b7c_A Probable oxidoreductase 20.9 3.2E+02 0.011 24.4 8.3 58 86-146 143-201 (336)
152 1jvb_A NAD(H)-dependent alcoho 20.8 3.2E+02 0.011 24.6 8.2 60 84-146 162-222 (347)
153 2yxb_A Coenzyme B12-dependent 20.8 2.4E+02 0.0083 22.2 6.4 82 260-343 31-119 (161)
154 4hvk_A Probable cysteine desul 20.6 1.9E+02 0.0063 26.1 6.7 56 91-147 86-145 (382)
155 2ch1_A 3-hydroxykynurenine tra 20.5 3.9E+02 0.013 24.1 9.0 57 90-147 90-150 (396)
156 1uuf_A YAHK, zinc-type alcohol 20.4 2.5E+02 0.0085 25.7 7.4 61 83-147 185-245 (369)
157 1y80_A Predicted cobalamin bin 20.3 3.2E+02 0.011 22.5 7.5 54 95-148 90-147 (210)
158 1jbq_A B, cystathionine beta-s 20.2 4.5E+02 0.015 24.8 9.2 62 86-148 153-215 (435)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3e-64 Score=511.96 Aligned_cols=396 Identities=22% Similarity=0.300 Sum_probs=336.0
Q ss_pred chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225 47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA 120 (479)
Q Consensus 47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~ 120 (479)
.++.++|.++++++|+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~ 101 (536)
T 3ni2_A 22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAII 101 (536)
T ss_dssp CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEE
Confidence 57999999999999999999984 999 999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225 121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200 (479)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (479)
+|++|.++.+++.+++++++++++|++......+....... ..+++.++... .....++++........+
T Consensus 102 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-- 171 (536)
T 3ni2_A 102 TAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVKVMCVDSAP-------DGCLHFSELTQADENEAP-- 171 (536)
T ss_dssp EECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCEEEESSCCC-------TTCEETHHHHTSCGGGCC--
T ss_pred eccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-CceEEEecCCC-------CCccCHHHHhhccccccc--
Confidence 99999999999999999999999999988776665554332 34455444321 122333333332211111
Q ss_pred cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh----hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCc
Q psy8225 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY----QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGS 276 (479)
Q Consensus 201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~ 276 (479)
.....++++++|+|||||||.||||+++|+++...+..... .+++..+|++++.+|++|.+|+...++.++..|+
T Consensus 172 -~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~ 250 (536)
T 3ni2_A 172 -QVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGA 250 (536)
T ss_dssp -CCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTC
T ss_pred -cCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCC
Confidence 13456789999999999999999999999999887665433 3467889999999999999998777888999999
Q ss_pred eEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225 277 TVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY 354 (479)
Q Consensus 277 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y 354 (479)
++++.+.+++..+++.++++++|++.++|+++..|.+........+++||.++ |+++++++.+++++.++..++++.|
T Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 251 PILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp CEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 99999999999999999999999999999999999998776666789999877 8999999999999999434999999
Q ss_pred cccccCccccc--------CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc
Q psy8225 355 GATEGNANLMN--------ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA 426 (479)
Q Consensus 355 G~tE~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~ 426 (479)
|+||++.+++. ...+++++|+|++ +++++++|+++++ +++.|+.|||+++ |+
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~~~~----------~~~~g~~GEl~v~----g~ 390 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR------NAEMKIVDPETGA----------SLPRNQPGEICIR----GD 390 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEECS------SCEEEEECTTTCC----------BCCTTCCEEEEEE----ST
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeCC------CcEEEEEeCCCCc----------CCCCCCccEEEEe----Cc
Confidence 99999865432 1235677777665 8999999988777 6799999999998 88
Q ss_pred ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+++.|||++++.+.+.|+ .+|||+|||+|++|+||+|+|+||+||++
T Consensus 391 -~v~~GY~~~p~~t~~~~~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 437 (536)
T 3ni2_A 391 -QIMKGYLNDPEATSRTID-----KEGWLHTGDIGYIDDDDELFIVDRLKELI 437 (536)
T ss_dssp -TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEECSCCE
T ss_pred -ccchhhcCChhHHHhhcc-----CCCceEcccEEEEcCCceEEEEecccceE
Confidence 999999999988887764 38999999999999999999999999985
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.2e-63 Score=506.01 Aligned_cols=403 Identities=19% Similarity=0.238 Sum_probs=324.5
Q ss_pred ccchhHHHHHHHhhcCCCccccE---EE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225 45 LPTYARPLFVRTIREVPMTGAYK---YT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK 115 (479)
Q Consensus 45 ~~~~l~~~l~~~~~~~p~~~a~~---~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~ 115 (479)
.+.++.++|.++++++|+++|++ +. +|| ||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 97 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence 34679999999999999999987 21 999 9999999999999999999999999999999999999999999
Q ss_pred cCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCC
Q psy8225 116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVS 194 (479)
Q Consensus 116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (479)
+|++++|+++.++.+++.++++.++++++|++.+....+.......+.+. +++.+..... .....+.+++....
T Consensus 98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-----QGFQSMYTFVTSHL 172 (550)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB-----TTBCBHHHHHHHHC
T ss_pred cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc-----cCcccHHHHhhccc
Confidence 99999999999999999999999999999999988877777766666444 3333322110 11222333322111
Q ss_pred CC----CCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh---cCCCCCCeEEEeccchhhhhhHHH
Q psy8225 195 AK----SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ---TGLTSDDVVYTTLPLYHTAGGLLG 267 (479)
Q Consensus 195 ~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~h~~g~~~~ 267 (479)
.. ..........++++++|+|||||||.||||+++|+++...+...... .++.+++++++.+|++|.+|+ ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~ 251 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FT 251 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHH-HH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHH-HH
Confidence 10 00000022245789999999999999999999999998877665544 467889999999999999997 45
Q ss_pred HHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHh
Q psy8225 268 IGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRF 345 (479)
Q Consensus 268 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~ 345 (479)
++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........+++||.++ |+++++++.+++.+.+
T Consensus 252 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 252 TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 67789999999999999999999999999999999999999999988766666789999877 8999999999999999
Q ss_pred CcceeeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEee
Q psy8225 346 GLDRICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK 422 (479)
Q Consensus 346 ~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~ 422 (479)
+...+++.||+||+++.++.. ..+++++|+|+| +++++++|+++++ ++++|+.|||+++
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~------~~~~~i~d~~~~~----------~~~~g~~GEl~v~-- 393 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP------FFEAKVVDLDTGK----------TLGVNQRGELCVR-- 393 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECT------TCEEEEECTTTCC----------BCCTTCCEEEEEE--
T ss_pred CCCccccccCcCccccceecCCCCCCCCCCcccccC------CcEEEEEeCCCCc----------CCCCCCCeEEEEe--
Confidence 985699999999998765532 345677787666 7999999988776 6789999999998
Q ss_pred cCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 423 ESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 423 ~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
|+ +++.|||++++.+.+.|+ .+|||+|||+|++|+||+|+|+||+||++
T Consensus 394 --g~-~v~~GY~~~~~~t~~~~~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 442 (550)
T 3rix_A 394 --GP-MIMSGYVNNPEATNALID-----KDGWLHSGDIAYWDEDEHFFIVDRLKSLI 442 (550)
T ss_dssp --ST-TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTCCEEEC-------
T ss_pred --CC-CcchhhcCChhhhhhhcC-----CCCCeecCcEEEEeCCceEEEEecchhee
Confidence 88 999999999998887763 38999999999999999999999999985
No 3
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=7.3e-63 Score=504.95 Aligned_cols=419 Identities=21% Similarity=0.288 Sum_probs=340.6
Q ss_pred CCcccHHHHHHhhhhccc---chhHHHHHHHhhcCCCccccEEE--------Eeh-hhHHHHHHHHHHHHHcCCCCCCEE
Q psy8225 29 ENSLDLKQLISGMQKTLP---TYARPLFVRTIREVPMTGAYKYT--------VTF-QVEDHSNRIANFFKSKGLQRGDAV 96 (479)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~p~~~a~~~~--------~Ty-~l~~~~~~la~~L~~~gi~~gd~V 96 (479)
....+..++...+....| +++.++|+++++.+|+++|+++. +|| ||.++++++|+.|+++|+++||+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V 114 (580)
T 3etc_A 35 TDFESYEDFQENFKILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYV 114 (580)
T ss_dssp SCCSSHHHHHHHCCBCCCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred ccccCHHHHHhcCCCCCcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 344566667666655544 56779999999999999999972 999 999999999999999999999999
Q ss_pred EEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhH--HHHHHhhccCCc--ceEEecCCC
Q psy8225 97 ALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS--EALTEVKDSIPG--ISLYAAGTR 172 (479)
Q Consensus 97 ~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~--~~~~~~~~~ 172 (479)
+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.++...++. ..++.++..
T Consensus 115 ~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (580)
T 3etc_A 115 MLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD 194 (580)
T ss_dssp EEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS
T ss_pred EEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc
Confidence 9999999999999999999999999999999999999999999999999976643 555555444443 233333322
Q ss_pred CCCCccCCCccccccccCCcCCCCCC-cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCe
Q psy8225 173 RKPQAKVLPSTTLLDEELPEVSAKSP-TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~ 251 (479)
.. .....+.+.+........ ........++++++|+|||||||.||+|+++|.+++..+.......++..+++
T Consensus 195 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (580)
T 3etc_A 195 VL------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGL 268 (580)
T ss_dssp CC------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCE
T ss_pred cc------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCce
Confidence 11 223344444333222111 11112457789999999999999999999999998887776666678899999
Q ss_pred EEEeccchhhhhhHHHHHHHHhcCceEEec--CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE
Q psy8225 252 VYTTLPLYHTAGGLLGIGQCLLGGSTVVIR--SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI 329 (479)
Q Consensus 252 ~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~ 329 (479)
+++..|++|..+.+..++.++..|+++++. ..+++..+++.|+++++|++.++|++++.|.+.. ....++++||.++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~ 347 (580)
T 3etc_A 269 HYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAV 347 (580)
T ss_dssp EEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEE
T ss_pred EEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEE
Confidence 999999999988766778899999999887 5789999999999999999999999999998863 3445678999877
Q ss_pred --ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCC
Q psy8225 330 --GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG 404 (479)
Q Consensus 330 --G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g 404 (479)
|+++++++.++|.+.+|. ++++.||+||++..+... ..+++++|+|+| +++++++|++ |+
T Consensus 348 ~gGe~l~~~~~~~~~~~~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~------~~~v~ivd~~-g~------- 412 (580)
T 3etc_A 348 VAGEPLNPEVFNRFLEFTGI-KLMEGFGQTETVVTIATFPWMEPKPGSIGKPTP------GYKIELMDRD-GR------- 412 (580)
T ss_dssp ECSSCCCHHHHHHHHHHHSC-CCEEEECCTTSSCCEECCTTSCCCTTCCBEECT------TCEEEEECTT-SC-------
T ss_pred EccCCCCHHHHHHHHHHhCC-eEecccccccccceeecCCCCCCCCCccccCCC------CCEEEEECCC-CC-------
Confidence 899999999999999998 999999999998766543 346678888766 8999999965 54
Q ss_pred ccccccCCCCceEEEEeec-CCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 405 LCIPCKAEEPGILIGMIKE-SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 405 ~~~~~~~~~~Gel~v~~~~-~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+|++|+.|||++++.. ..+ +++.||+++++.+.+.|. +|||+|||+|++|+||+|+|+||+||++
T Consensus 413 ---~~~~g~~GEl~v~~~~g~~~-~~~~gY~~~p~~t~~~f~------~gwy~TGDlg~~d~dG~l~~~GR~dd~I 478 (580)
T 3etc_A 413 ---LCEVGEEGEIVINTMEGKPV-GLFVHYGKDPERTEETWH------DGYYHTGDMAWMDEDGYLWFVGRADDII 478 (580)
T ss_dssp ---BCCTTCCEEEEEECTTCCCT-TCCCEETTCHHHHHHHEE------TTEEEEEEEEEECTTSCEEEEEESSSCE
T ss_pred ---CCCCCCceEEEEecCCCCCC-eeeccccCCHhHHHhhcC------CCEEecCcEEEECCCCcEEEEecCCCEE
Confidence 6799999999998321 114 899999999999888775 8999999999999999999999999985
No 4
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.8e-63 Score=501.81 Aligned_cols=400 Identities=17% Similarity=0.184 Sum_probs=325.3
Q ss_pred hcccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225 43 KTLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV 118 (479)
Q Consensus 43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 118 (479)
.+.+.++.++|.++++++|+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 345578999999999999999999987 999 9999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCc
Q psy8225 119 VAAFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPE 192 (479)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (479)
+++|+++.++.+++.+++++++++++|++.... .....+........ ++....... ...+.++...
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 177 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT--------DFGLLDWIET 177 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT--------SEEHHHHHHS
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc--------ccchhhhhhc
Confidence 999999999999999999999999999987543 23333333333222 222222110 0111111111
Q ss_pred CCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH-HHHHH
Q psy8225 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL-GIGQC 271 (479)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~~ 271 (479)
....... .....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++.. .++.+
T Consensus 178 ~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~ 255 (544)
T 3o83_A 178 PAETFVD--FSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGV 255 (544)
T ss_dssp CCSSCCC--CCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHH
T ss_pred ccccccc--cccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHH
Confidence 1111111 13446789999999999999999999999999999988888889999999999999999998754 57889
Q ss_pred HhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcce
Q psy8225 272 LLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDR 349 (479)
Q Consensus 272 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~ 349 (479)
+..|+++++.+.+++..+++.++++++|++.++|+++..|++........+++||.++ |+++++++.+++.+.++. +
T Consensus 256 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~ 334 (544)
T 3o83_A 256 LHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-K 334 (544)
T ss_dssp HHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCS-E
T ss_pred HHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCC-c
Confidence 9999999999999999999999999999999999999999887665555688999876 899999999999999998 9
Q ss_pred eeeeccccccCcccccCCC----CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCC
Q psy8225 350 ICEFYGATEGNANLMNADG----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR 425 (479)
Q Consensus 350 v~~~YG~tE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~ 425 (479)
+++.||+||++..+..... ..+++|+|++ ++++++++|+ +++ +|++|+.|||+++ |
T Consensus 335 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~-----~~~~~~i~d~-~~~----------~~~~g~~GEl~v~----g 394 (544)
T 3o83_A 335 LQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPIS-----SDDEIKIVDE-QYR----------EVPEGEIGMLATR----G 394 (544)
T ss_dssp EEEEEECTTSCEEECCTTSCHHHHHHCCCEESC-----TTCEEEEECT-TSC----------BCCTTCCEEEEEE----C
T ss_pred EEeeeccccccceeecCCCchhhccCCCceecC-----CCcEEEEECC-CCC----------CCCCCCeeEEEEe----c
Confidence 9999999998865543322 2355677542 2688998984 454 6799999999998 8
Q ss_pred cccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 426 ~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
| +++.||+++++.+.+.|. .+|||+|||+|++|+||+|+|+||+||++
T Consensus 395 ~-~v~~GY~~~~~~t~~~f~-----~~g~~~TGDlg~~~~dG~l~~~GR~dd~i 442 (544)
T 3o83_A 395 P-YTFCGYYQSPEHNSQVFD-----EDNYYYSGDLVQRTPDGNLRVVGRIKDQI 442 (544)
T ss_dssp T-TSCSCCTTCHHHHHHHBC-----TTCCEEEEEEEEECTTSCEEEEEEEC---
T ss_pred C-CcchhhcCChhhhhhhCC-----CCCCeEcCCEEEEcCCCCEEEEeecCCEE
Confidence 8 999999999998887764 38999999999999999999999999985
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.8e-62 Score=493.33 Aligned_cols=388 Identities=25% Similarity=0.311 Sum_probs=324.5
Q ss_pred HHHHHHHhhcCCCccccEEE------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225 50 RPLFVRTIREVPMTGAYKYT------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122 (479)
Q Consensus 50 ~~~l~~~~~~~p~~~a~~~~------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~ 122 (479)
.++|.+.++++|+++|+... +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 82 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLP 82 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEe
Confidence 36889999999999999863 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI 202 (479)
Q Consensus 123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (479)
+++.++.+++.+++++++++++|++.+....+........ ..+........ ..+.+.......... .
T Consensus 83 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~---~ 149 (503)
T 4fuq_A 83 LNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-ATVETLGPDGR---------GSLTDAAAGASEAFA---T 149 (503)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-CEEEECCTTSC---------SHHHHHHHTSCSCCC---C
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-ceEEEecCCcc---------cccchhhhcCCCCcC---c
Confidence 9999999999999999999999999876544433332222 12322221110 011111111111111 1
Q ss_pred cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225 203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282 (479)
Q Consensus 203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 282 (479)
....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+|+...++.++..|+++++.+
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 229 (503)
T 4fuq_A 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP 229 (503)
T ss_dssp CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS
T ss_pred CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 34567899999999999999999999999999998888888899999999999999999998777778899999999999
Q ss_pred CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccC
Q psy8225 283 KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGN 360 (479)
Q Consensus 283 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~ 360 (479)
.+++..+++.++ ++|++.++|+++..|++........++++|.++ |+++++++.++|.+.+|. ++++.||+||++
T Consensus 230 ~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~ 306 (503)
T 4fuq_A 230 KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETN 306 (503)
T ss_dssp SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSC-CEEECCEETTTE
T ss_pred CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCC-CccceEcccccC
Confidence 999999999997 899999999999999998877666788999877 788999999999999998 999999999998
Q ss_pred cccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcc
Q psy8225 361 ANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKK 437 (479)
Q Consensus 361 ~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~ 437 (479)
..+... ...++++|+|++ +++++++|+++++ ++++|+.|||+++ || +++.|||+++
T Consensus 307 ~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~g~----------~~~~g~~GEl~v~----g~-~v~~GY~~~~ 365 (503)
T 4fuq_A 307 MNTSNPYDGDRVPGAVGPALP------GVSARVTDPETGK----------ELPRGDIGMIEVK----GP-NVFKGYWRMP 365 (503)
T ss_dssp ECBCCCSSSCCCTTEEEEBCT------TCEEEEECTTTCC----------BCCTTCCEEEEEE----ST-TSCCCBTTCH
T ss_pred cccccCCCCCCcCCccccCCC------CeEEEEEECCCCC----------CCcCCCceEEEEE----CC-chhhhhcCCh
Confidence 665432 344567777665 8999999988777 6799999999998 88 9999999999
Q ss_pred hhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 438 ASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 438 ~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+.+.+.|. .+|||+|||+|++|+||+|+|+||+||++
T Consensus 366 ~~t~~~f~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 402 (503)
T 4fuq_A 366 EKTKSEFR-----DDGFFITGDLGKIDERGYVHILGRGKDLV 402 (503)
T ss_dssp HHHHHTBC-----TTSCEEEEEEEEECTTCEEEECCSSTTCE
T ss_pred hhhHhhhC-----CCCCeEcceeEEEcCCCcEEEEecCCCEE
Confidence 88887664 37999999999999999999999999985
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1e-62 Score=502.09 Aligned_cols=398 Identities=20% Similarity=0.251 Sum_probs=327.4
Q ss_pred cchhHHHHHHHhhcCCCccccEEE-----------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225 46 PTYARPLFVRTIREVPMTGAYKYT-----------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL 113 (479)
Q Consensus 46 ~~~l~~~l~~~~~~~p~~~a~~~~-----------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~ 113 (479)
..++.++|.++++++|+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 97 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYAL 97 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 467899999999999999999874 899 99999999999999999999999999999999999999999
Q ss_pred hhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcC
Q psy8225 114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEV 193 (479)
Q Consensus 114 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (479)
+++|++++|++|.++.+++.+++++++++++|++......+.......+...+++.+.. ...+.++....
T Consensus 98 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 167 (549)
T 3g7s_A 98 WRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGE----------VNSLSEVMDSG 167 (549)
T ss_dssp HHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCS----------SSCHHHHHHHS
T ss_pred HHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCC----------CcCHHHHHhcC
Confidence 99999999999999999999999999999999999887777766655543334433321 12233333322
Q ss_pred CCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHh
Q psy8225 194 SAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL 273 (479)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~ 273 (479)
....... ....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++.. ++.++.
T Consensus 168 ~~~~~~~--~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~ 244 (549)
T 3g7s_A 168 SEDFENV--KVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVT 244 (549)
T ss_dssp CSCCCCC--CCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHH
T ss_pred ccccccc--cCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHh
Confidence 2211111 1223388999999999999999999999999999988888889999999999999999998755 677889
Q ss_pred cCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCC--CCCCceeEEE--ecCCChhhHHHHHHH----h
Q psy8225 274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPE--DTQHSVKMMI--GNGLRPQVWEPFQKR----F 345 (479)
Q Consensus 274 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~--~~l~~lr~~~--G~~l~~~~~~~~~~~----~ 345 (479)
.|+++++.+.+++..+++.++++++|++.++|++++.|++...... ..++++|.+. |+++++++.+++.+. +
T Consensus 245 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~ 324 (549)
T 3g7s_A 245 VGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKC 324 (549)
T ss_dssp HCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHS
T ss_pred cCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999887643322 4678999877 789999999999988 6
Q ss_pred C---cceeeeeccccccCcccccCC----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEE
Q psy8225 346 G---LDRICEFYGATEGNANLMNAD----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILI 418 (479)
Q Consensus 346 ~---~~~v~~~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~ 418 (479)
+ . ++++.||+||++.+++... ...+++|+|++ +++++++|+++++ +|+.|+.|||+
T Consensus 325 ~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~g~----------~~~~g~~GEl~ 387 (549)
T 3g7s_A 325 NNPRL-RHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMS------DIELKVISLEDGR----------ELGVGESGEIV 387 (549)
T ss_dssp SCTTC-EEEEEEECGGGSSEEEECCGGGGGGTTSCCEECT------TCEEEEECSSSCC----------EECTTCCEEEE
T ss_pred CCccc-cccceEeccccchhhhcCCccccCcCCCccccCC------CCEEEEEeCCCCc----------CCCCCCceEEE
Confidence 6 5 8999999999987665332 34566677655 8999999977777 67999999999
Q ss_pred EEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 419 v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
++ || +++.|||++++.+.+.|.. ..++++||+|||+|++|+||+|+|+||+||++
T Consensus 388 v~----g~-~v~~GY~~~~~~t~~~f~~-~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~i 442 (549)
T 3g7s_A 388 IR----GP-NIFKGYWKREKENQECWWY-DEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVI 442 (549)
T ss_dssp EE----ST-TSCSEETTCTTGGGTSEEE-CTTCCEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred EE----Cc-chhhhhCCChhhhhhhhhc-cCCCCceEccCcEEEEcCCceEEEeccccceE
Confidence 98 88 9999999998887765410 02234499999999999999999999999986
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.6e-62 Score=497.83 Aligned_cols=394 Identities=18% Similarity=0.208 Sum_probs=324.6
Q ss_pred ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225 45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA 120 (479)
Q Consensus 45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~ 120 (479)
...++.++|.++++++|+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 3467999999999999999999986 999 999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcceEE-ecCCCCCCCccCCCccccccccCCcCC
Q psy8225 121 AFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGISLY-AAGTRRKPQAKVLPSTTLLDEELPEVS 194 (479)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (479)
+|++|.++.+++.+++++++++++|++.+.. ..+..+....+.++.+ +.+... .+.++.....
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 171 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-----------EFLPLEDLHT 171 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-----------TSEEGGGCCC
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-----------chhhhhhccc
Confidence 9999999999999999999999999976431 2333333334443322 222111 1222221111
Q ss_pred CCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH-HHHHHHh
Q psy8225 195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL-GIGQCLL 273 (479)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~~l~ 273 (479)
.... .....++++++++|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++.. .++.++.
T Consensus 172 ~~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 248 (539)
T 1mdb_A 172 EPVK---LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (539)
T ss_dssp CCCC---CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred cccc---cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHH
Confidence 1101 13446789999999999999999999999999998888878888999999999999999999765 6888999
Q ss_pred cCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceee
Q psy8225 274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRIC 351 (479)
Q Consensus 274 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~ 351 (479)
.|+++++.+.+++..+++.++++++|++.++|+++..|++........+++||.++ |+++++++.+++++.+|. +++
T Consensus 249 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~ 327 (539)
T 1mdb_A 249 AGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQ 327 (539)
T ss_dssp TTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEE
T ss_pred hCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC-cEE
Confidence 99999999999999999999999999999999999998876544445678999876 899999999999999998 999
Q ss_pred eeccccccCcccccCCC----CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcc
Q psy8225 352 EFYGATEGNANLMNADG----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427 (479)
Q Consensus 352 ~~YG~tE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~ 427 (479)
+.||+||++..+...+. ..+++|+|++. ..+++++|++ ++ +|++|+.|||+++ ||
T Consensus 328 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~-----~~~~~i~d~~-~~----------~~~~g~~GEl~v~----g~- 386 (539)
T 1mdb_A 328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP-----YDESRVWDDH-DR----------DVKPGETGHLLTR----GP- 386 (539)
T ss_dssp EEEECTTSCEEECCTTSCHHHHHHCCCEESST-----TCEEEEECTT-SC----------BCCTTCCEEEEEE----CT-
T ss_pred EEEcCCCCcccccCCCCcHHhcCCCCCcccCC-----CceEEEECCC-CC----------CCcCCCcceEEee----Cc-
Confidence 99999997644433221 23567776541 2468888854 44 6799999999998 88
Q ss_pred cccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 428 ~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+++.|||++++.+.+.|. .+|||+|||+|++|+||+|+|+||+||++
T Consensus 387 ~v~~GY~~~~~~t~~~f~-----~~g~~~TGDlg~~~~dG~l~~~GR~dd~i 433 (539)
T 1mdb_A 387 YTIRGYYKAEEHNAASFT-----EDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433 (539)
T ss_dssp TSCSSCTTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred ccchhhcCChhhhhhhcc-----CCCCeecCceEEECCCCcEEEeccccceE
Confidence 999999999988887664 27999999999999999999999999985
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=8.6e-62 Score=494.67 Aligned_cols=400 Identities=19% Similarity=0.242 Sum_probs=328.8
Q ss_pred chhHH-HHHHHhhcCCCccccEE---E--Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225 47 TYARP-LFVRTIREVPMTGAYKY---T--VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV 119 (479)
Q Consensus 47 ~~l~~-~l~~~~~~~p~~~a~~~---~--~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~ 119 (479)
.++.+ +|.++++++ +++|+++ . +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 46888 888889999 9999997 2 999 99999999999999999999999999999999999999999999999
Q ss_pred eeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCC-C
Q psy8225 120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK-S 197 (479)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 197 (479)
++|+++.++.+++.+++++++++++|++.+....+..+....+ ...++.++.... ......++++....... .
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 178 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-----YRGYQCLDTFIKRNTPPGF 178 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-----BTTBCBHHHHHHHTSCTTC
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-----ccccccHHHHHhcCccccC
Confidence 9999999999999999999999999999887766655544444 233444432210 00112233333222111 1
Q ss_pred Cccccc--CC-CCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh---cCCCCCCeEEEeccchhhhhhHHHHHHH
Q psy8225 198 PTEDIK--KN-KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ---TGLTSDDVVYTTLPLYHTAGGLLGIGQC 271 (479)
Q Consensus 198 ~~~~~~--~~-~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~h~~g~~~~~~~~ 271 (479)
...... .. ..+++++|+|||||||.||||+++|+++...+...... +++..+|++++.+|++|.+|+...++.+
T Consensus 179 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 258 (548)
T 2d1s_A 179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL 258 (548)
T ss_dssp CGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred CcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 110000 01 23889999999999999999999999999887776655 6788999999999999999986667777
Q ss_pred HhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcce
Q psy8225 272 LLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDR 349 (479)
Q Consensus 272 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~ 349 (479)
+ .|+++++.+.+++..+++.|+++++|++.++|++++.|.+........+++||.++ |+++++++.+++.+.++...
T Consensus 259 l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 337 (548)
T 2d1s_A 259 I-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337 (548)
T ss_dssp H-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred h-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence 7 99999999999999999999999999999999999999987665555688999876 89999999999999995448
Q ss_pred eeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc
Q psy8225 350 ICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA 426 (479)
Q Consensus 350 v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~ 426 (479)
+++.||+||++..+... ..+.+++|+|+| +++++++|+++++ ++++|+.|||+++ |+
T Consensus 338 i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~~~~----------~~~~g~~GEl~v~----g~ 397 (548)
T 2d1s_A 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVP------LFKAKVIDLDTKK----------SLGPNRRGEVCVK----GP 397 (548)
T ss_dssp CEEEEECGGGSSEEEECCTTCCCTTCCBEECT------TCEEEEECTTTCC----------BCCTTCCEEEEEE----ST
T ss_pred eeeccccccccceeeecCcccCCCCCCCccCC------CceEEEEeCCcCc----------cCCCCCCeEEEEC----CH
Confidence 99999999998665432 234567777665 7999999977676 6789999999998 88
Q ss_pred ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+++.|||++++.+.+.|. .+|||+|||+|++|+||+|+|+||+||++
T Consensus 398 -~v~~GY~~~~~~t~~~f~-----~~g~~~TGDl~~~~~dG~l~~~GR~~d~i 444 (548)
T 2d1s_A 398 -MLMKGYVNNPEATKELID-----EEGWLHTGDIGYYDEEKHFFIVDRLKSLI 444 (548)
T ss_dssp -TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTCCEEEEEEGGGCB
T ss_pred -HHhhhhcCChHHhhhccc-----CCcEEEccCEEEEcCCCeEEEeccccceE
Confidence 999999999988877663 37999999999999999999999999985
No 9
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.8e-61 Score=491.80 Aligned_cols=393 Identities=19% Similarity=0.222 Sum_probs=321.8
Q ss_pred ccchhHHHHHHHhhcCCCccccEE------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225 45 LPTYARPLFVRTIREVPMTGAYKY------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI 116 (479)
Q Consensus 45 ~~~~l~~~l~~~~~~~p~~~a~~~------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~ 116 (479)
.+.++.++|.++++++|+++|+++ . +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++
T Consensus 16 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 16 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 346799999999999999999984 2 999 99999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCC
Q psy8225 117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195 (479)
Q Consensus 117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (479)
|++++|++|.++.+++.+++++++++++|++.+....+..+....+.++ +++.+.... .....+++++.....
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 169 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP------EGYLAYEEALGEEAD 169 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC------TTCEEHHHHCCSCCC
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC------cccccHHHHhhccCC
Confidence 9999999999999999999999999999999888777766655555443 333332210 112234444332221
Q ss_pred CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhh--hhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHh
Q psy8225 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS--GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL 273 (479)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~ 273 (479)
. ....++++++|+|||||||.||||+++|+++...... ....+++..+|++++.+|++|.+++ ..++.++.
T Consensus 170 ~------~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~ 242 (541)
T 1v25_A 170 P------VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATL 242 (541)
T ss_dssp C------CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHHH
T ss_pred c------ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHHh
Confidence 1 2345688999999999999999999999999876654 2345678899999999999999987 44667889
Q ss_pred cCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCccee
Q psy8225 274 GGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRI 350 (479)
Q Consensus 274 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v 350 (479)
.|+++++.+ .+++..+++.++++++|++.++|+++..|.+........+++||.++ |+++++++.++| +.++. ++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~-~~ 320 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGV-EV 320 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTC-EE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhCC-ce
Confidence 999999986 47999999999999999999999999998876443344678999876 899999999999 67888 99
Q ss_pred eeeccccccCcccccCCC--------------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccC--CCC
Q psy8225 351 CEFYGATEGNANLMNADG--------------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKA--EEP 414 (479)
Q Consensus 351 ~~~YG~tE~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~--~~~ 414 (479)
++.||+||++..++.... ..+++|+|+| +++++++|++ ++ +++. ++.
T Consensus 321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~-g~----------~~~~~~~~~ 383 (541)
T 1v25_A 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIP------LVRLRVADEE-GR----------PVPKDGKAL 383 (541)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECT------TCEEEEECTT-SC----------BCCSSSCCC
T ss_pred eecccccccccceecccccccccccCccccccccCCCCCcCC------CcEEEEECCC-CC----------CCCCCCCcc
Confidence 999999999876543221 1345666554 8999999965 44 3453 368
Q ss_pred ceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 415 GILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 415 Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
|||+++ || +++.|||++++.+++.|. .+|||+|||+|++|+||+|+|+||+||++
T Consensus 384 GEl~v~----g~-~v~~GY~~~p~~t~~~f~-----~~g~~~TGDlg~~d~dG~l~~~GR~~d~i 438 (541)
T 1v25_A 384 GEVQLK----GP-WITGGYYGNEEATRSALT-----PDGFFRTGDIAVWDEEGYVEIKDRLKDLI 438 (541)
T ss_dssp EEEEEE----ST-TSBSSCBTCHHHHHTTBC-----TTSCEEEEEEEEECTTCCEEEEEESSCEE
T ss_pred eEEEEe----Cc-chhccccCChhhhhhhcc-----CCCCeEcCCEEEEcCCceEEEeeccccee
Confidence 999998 88 999999999988876653 27899999999999999999999999975
No 10
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.5e-61 Score=487.05 Aligned_cols=387 Identities=21% Similarity=0.245 Sum_probs=315.4
Q ss_pred chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225 47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA 120 (479)
Q Consensus 47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~ 120 (479)
.++.++|+++++++|+++|+.+. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 35889999999999999999864 999 999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcchHHHHHHHHhccceEEEe--ChhhHHHH-HHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCC--
Q psy8225 121 AFINTNQRQHILIHSIKVAECKAIIY--GAELSEAL-TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA-- 195 (479)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 195 (479)
+|++|.++.+++.+++++++++++|+ +......+ ... +.++++. ++++......
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~-----------------~~~~~~~~~~~~ 140 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGARIIF-----------------LGDLVRDGEPYS 140 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCEEEE-----------------GGGTEETTEECC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccceeEE-----------------ecchhhcCcccc
Confidence 99999999999999999999999999 66554443 221 2233221 1111111000
Q ss_pred CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCC--CCCCeEEEeccchhhhhhHHHHHHHHh
Q psy8225 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL--TSDDVVYTTLPLYHTAGGLLGIGQCLL 273 (479)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~~~~~pl~h~~g~~~~~~~~l~ 273 (479)
...........++++++|+|||||||.||||+++|+++...+......+++ ..++++++.+|++|.+|+...++.++.
T Consensus 141 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~ 220 (504)
T 1t5h_X 141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220 (504)
T ss_dssp CSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHH
T ss_pred cCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHH
Confidence 000000023457899999999999999999999999999888877777777 888999999999999998777888999
Q ss_pred cCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCC--CCCCCCCceeEEE--ecCCChhhHHHHHHHhCcce
Q psy8225 274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE--KPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDR 349 (479)
Q Consensus 274 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~ 349 (479)
.|+++++.+.+++..+++.|+++++|++.++|++++.|.+... .....+++||.++ |+++++++.+++++.++. .
T Consensus 221 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~ 299 (504)
T 1t5h_X 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-E 299 (504)
T ss_dssp TTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCS-E
T ss_pred cCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCc-c
Confidence 9999999999999999999999999999999999999987542 2334578999877 899999999999999998 8
Q ss_pred eeeeccccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccc
Q psy8225 350 ICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429 (479)
Q Consensus 350 v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~ 429 (479)
+++.||+||++........+.+++|.|.+ +++++++|++.+. ..+|+.|+.|||+++ .|+ ++
T Consensus 300 ~~~~YG~TE~~~~~~~~~~~~~~~g~p~~------~~~~~i~~~~~~~--------~~~~~~g~~GEl~v~---gg~-~~ 361 (504)
T 1t5h_X 300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGF------FSEVRIVRIGGGV--------DEIVANGEEGELIVA---ASD-SA 361 (504)
T ss_dssp EEEEEEETTTEEEEEEESCSSSSEEBCCT------TCCEEEECTTSCT--------TCBCCTTCCEEEEEE---CCT-TS
T ss_pred eeeeeccccccccccccCCCCCccccCCC------CCceeEEeccCCC--------CCcCCCCCcceEEEe---CCc-ee
Confidence 99999999994333333445677777665 6889998865321 026789999999997 134 89
Q ss_pred cccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 430 ~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+.||+++++.+.+.|. +|||+|||+|++|+||+|+|+||+||++
T Consensus 362 ~~GY~~~~~~t~~~f~------~g~~~TGDlg~~~~dG~l~~~GR~dd~i 405 (504)
T 1t5h_X 362 FVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMI 405 (504)
T ss_dssp CCCBTTCHHHHHHHEE------TTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred eceecCCchhhhhhhc------CCccccCcEEEECCCceEEEeCcccCEE
Confidence 9999999988887764 7899999999999999999999999985
No 11
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.4e-62 Score=491.94 Aligned_cols=391 Identities=23% Similarity=0.311 Sum_probs=323.1
Q ss_pred hcccchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225 43 KTLPTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI 116 (479)
Q Consensus 43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~ 116 (479)
.....++.++|+++++.+|+++|+++. +|| ||.++++++|..|+++|+++||+|+++++|++++++++|||+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 345577999999999999999999975 999 99999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCC
Q psy8225 117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195 (479)
Q Consensus 117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (479)
|++++|++|.++.+++.+++++++++++|++....+.+..+....+... ++... ....+.+.+.....
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI-----------GADSLAERLRSAAA 160 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE-----------EHHHHHHHHHHCCC
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc-----------CcccHHHHhhccCc
Confidence 9999999999999999999999999999999887776666544332111 10000 00112222221111
Q ss_pred CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGG 275 (479)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G 275 (479)
..+ .....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++...++..+ .|
T Consensus 161 ~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G 236 (517)
T 3r44_A 161 DEP---AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RG 236 (517)
T ss_dssp CCC---CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HT
T ss_pred CCC---CCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cC
Confidence 111 13456789999999999999999999999999999988888889999999999999999999865555455 89
Q ss_pred ceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeee
Q psy8225 276 STVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEF 353 (479)
Q Consensus 276 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~ 353 (479)
+++++.+.+++..+++.++++++|++.++|++++.|.+........+++||.++ |+++++++.+++.+. +. ++++.
T Consensus 237 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~-~~~~~ 314 (517)
T 3r44_A 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK-NI-EVVQG 314 (517)
T ss_dssp CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TC-EEEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc-CC-cEEEe
Confidence 999999999999999999999999999999999999887655555678999877 899999999999887 77 99999
Q ss_pred ccccccCccccc-----CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccc
Q psy8225 354 YGATEGNANLMN-----ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES 428 (479)
Q Consensus 354 YG~tE~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~ 428 (479)
||+||+++.++. .....+++|+|.+ +++++++|++ +. +++.| .|||+++ |+ +
T Consensus 315 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-~~----------~~~~g-~GEl~v~----g~-~ 371 (517)
T 3r44_A 315 YALTESCGGGTLLLSEDALRKAGSAGRATM------FTDVAVRGDD-GV----------IREHG-EGEVVIK----SD-I 371 (517)
T ss_dssp EECGGGTTCEEEECGGGTTTTTTCCBEECT------TEEEEEECTT-SC----------EESSE-EEEEEEE----ET-T
T ss_pred ecccccccceeecCCccccccCCCCCcCCC------CeEEEEECCC-CC----------CCCCC-CeEEEEe----Cc-c
Confidence 999999865432 1345677777665 7899988854 44 45677 8999998 77 9
Q ss_pred ccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 429 ~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
++.|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||++
T Consensus 372 v~~GY~~~p~~t~~~f~------~g~~~TGDl~~~~~dG~l~~~GR~dd~i 416 (517)
T 3r44_A 372 LLKEYWNRPEATRDAFD------NGWFRTGDIGEIDDEGYLYIKDRLKDMI 416 (517)
T ss_dssp SCSEETTCHHHHHHTEE------TTEEEEEEEEEECTTSCEEEEECGGGCE
T ss_pred hhhhhCCChhhhHhhhc------CCCEecceeEEEcCCeeEEEecCCcCEE
Confidence 99999999998887764 8999999999999999999999999985
No 12
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4.4e-61 Score=498.64 Aligned_cols=407 Identities=21% Similarity=0.290 Sum_probs=326.3
Q ss_pred cchhHHHHHHHhhcCCCccccEE--------E-Eeh-hhHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHHHHHHHhh
Q psy8225 46 PTYARPLFVRTIREVPMTGAYKY--------T-VTF-QVEDHSNRIANFFK-SKGLQRGDAVALFMEGQPEYVCMWLGLS 114 (479)
Q Consensus 46 ~~~l~~~l~~~~~~~p~~~a~~~--------~-~Ty-~l~~~~~~la~~L~-~~gi~~gd~V~i~~~n~~e~~~~~lA~~ 114 (479)
.+++.++|+++++++|+++|+++ . +|| ||.++++++|+.|+ ++|+++||+|+|+++|++++++++|||+
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~ 160 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAIS 160 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 37889999999999999999998 1 999 99999999999999 8999999999999999999999999999
Q ss_pred hcCceeeeecCCcchHHHHHHHHhccceEEEeChhh---------HHHHHHhhccCCcce-EEecCCCCCCCccC-CCcc
Q psy8225 115 KIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL---------SEALTEVKDSIPGIS-LYAAGTRRKPQAKV-LPST 183 (479)
Q Consensus 115 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 183 (479)
++|++++|+++.++.+++.++++++++++||+++.. ...+.++....+.+. ++++.......... ....
T Consensus 161 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 240 (663)
T 1ry2_A 161 RIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRD 240 (663)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSE
T ss_pred HcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCcc
Confidence 999999999999999999999999999999997653 223444444444433 33333211000000 0112
Q ss_pred ccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhh-hhhhhcCCCCCCeEEEeccchhhh
Q psy8225 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI-SGRYQTGLTSDDVVYTTLPLYHTA 262 (479)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl~h~~ 262 (479)
..|.+++........ .....++++++|+|||||||.||||+++|++++..+. .....+++.++|++++..|++|..
T Consensus 241 ~~~~~~~~~~~~~~~---~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (663)
T 1ry2_A 241 LDWATEKKKYKTYYP---CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWIT 317 (663)
T ss_dssp EEHHHHHTTSCSCCC---CCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHH
T ss_pred ccHHHHHhhcCCCCC---ccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhh
Confidence 234444332221111 1334578999999999999999999999999876654 444567889999999999999999
Q ss_pred hhHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCC
Q psy8225 263 GGLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLR 334 (479)
Q Consensus 263 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~ 334 (479)
|..+.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+.... ...++++||.++ |++++
T Consensus 318 g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 397 (663)
T 1ry2_A 318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIA 397 (663)
T ss_dssp HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCC
T ss_pred hhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCC
Confidence 987778899999999998764 5899999999999999999999999999887642 344688999877 89999
Q ss_pred hhhHHHHHHHhC---cceeeeeccccccCcccccC------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCc
Q psy8225 335 PQVWEPFQKRFG---LDRICEFYGATEGNANLMNA------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGL 405 (479)
Q Consensus 335 ~~~~~~~~~~~~---~~~v~~~YG~tE~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~ 405 (479)
+++++++.+.+| + ++++.||+||+++.+... +.+++++|+|++ +++++++|+++|+
T Consensus 398 ~~~~~~~~~~~g~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~------g~~v~i~d~~~g~-------- 462 (663)
T 1ry2_A 398 AEVWEWYSEKIGKNEI-PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF------GIDAVVLDPNTGE-------- 462 (663)
T ss_dssp HHHHHHHHHTTSCSSS-CEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT------TCCEEEECSSSTT--------
T ss_pred HHHHHHHHHHhCCCCc-eEEEeECCccccCeeeccCCCCCcccCCCccccCcC------CCeEEEEcCCCCC--------
Confidence 999999999998 6 899999999998654321 235677777665 8999999975676
Q ss_pred cccccC-CCCceEEEEeecCCc-ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 406 CIPCKA-EEPGILIGMIKESRA-ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 406 ~~~~~~-~~~Gel~v~~~~~~~-~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+++. |+.|||+++ || ++++.|||++++.+.+.+ +...+|||+|||+|++|+||+|+|+||+||++
T Consensus 463 --~v~~~g~~Gel~i~----g~~p~~~~gy~~~~~~~~~~~---~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I 529 (663)
T 1ry2_A 463 --ELNTSHAEGVLAVK----AAWPSFARTIWKNHDRYLDTY---LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV 529 (663)
T ss_dssp --CEECSSCEEEEEES----SCCTTSCCEETTCHHHHHHHH---TSSSTTSEEEEEEEEECTTCCEEECSCTTSCB
T ss_pred --cCCCCCcceEEEEe----cCCCchhcccccChHHHHHhh---hcCCCCEEEcCCEEEEcCCCCEEEEeecCCEE
Confidence 4566 889999998 64 289999999987665543 23347899999999999999999999999985
No 13
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.8e-61 Score=498.96 Aligned_cols=405 Identities=18% Similarity=0.222 Sum_probs=323.7
Q ss_pred chhHHHHHHHhhcCCCccccEE--------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225 47 TYARPLFVRTIREVPMTGAYKY--------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI 116 (479)
Q Consensus 47 ~~l~~~l~~~~~~~p~~~a~~~--------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~ 116 (479)
+++.++|+++++++|+++|+++ . +|| ||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 6788999999999999999997 2 999 99999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCcchHHHHHHHHhccceEEEeChhhH---------HHHHHhhccCC--cc-eEEecCCCCCCCccCCCccc
Q psy8225 117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS---------EALTEVKDSIP--GI-SLYAAGTRRKPQAKVLPSTT 184 (479)
Q Consensus 117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 184 (479)
|++++|+++.++.+++.++++++++++||+++... ..+.++....+ .+ +++++...............
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 235 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL 235 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEE
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCce
Confidence 99999999999999999999999999999976432 23333333322 22 23433321100000001122
Q ss_pred cccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhh-hhhhhcCCCCCCeEEEeccchhhhh
Q psy8225 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI-SGRYQTGLTSDDVVYTTLPLYHTAG 263 (479)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl~h~~g 263 (479)
.|++++........ .....++++++|+|||||||.||||+++|++++..+. .....+++.++|++++.+|++|.+|
T Consensus 236 ~~~~~~~~~~~~~~---~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g 312 (652)
T 1pg4_A 236 WWRDLIEKASPEHQ---PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312 (652)
T ss_dssp EHHHHHTTSCSCCC---CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred eHHHHHhhcCCCCC---ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeec
Confidence 34444433221111 1234578999999999999999999999999876653 4455678899999999999999999
Q ss_pred hHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCC--CCCCCCCceeEEE--ecCCCh
Q psy8225 264 GLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE--KPEDTQHSVKMMI--GNGLRP 335 (479)
Q Consensus 264 ~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~~~l~~lr~~~--G~~l~~ 335 (479)
+.+.++.++..|+++++.+. +++..+++.|+++++|++.++|++++.|.+... ....++++||.++ |+++++
T Consensus 313 ~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 392 (652)
T 1pg4_A 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINP 392 (652)
T ss_dssp HHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCH
T ss_pred hHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCH
Confidence 87778899999999999764 589999999999999999999999999988754 2344688999876 899999
Q ss_pred hhHHHHHHHhC---cceeeeeccccccCcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccc
Q psy8225 336 QVWEPFQKRFG---LDRICEFYGATEGNANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI 407 (479)
Q Consensus 336 ~~~~~~~~~~~---~~~v~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~ 407 (479)
++++++.+.+| + ++++.||+||+++.+... +.+++++|+|++ +++++++|++ |+
T Consensus 393 ~~~~~~~~~~g~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~------g~~v~i~d~~-g~---------- 454 (652)
T 1pg4_A 393 EAWEWYWKKIGKEKC-PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFF------GVQPALVDNE-GH---------- 454 (652)
T ss_dssp HHHHHHHHHTTTTCS-CEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCT------TCCEEEECTT-CC----------
T ss_pred HHHHHHHHHhCCCCC-cEEccccCcccccceecCCCCCcCccCCccccCcC------CCeEEEECCC-CC----------
Confidence 99999999998 6 899999999998665432 234567777665 8999999964 54
Q ss_pred cccCCCCceEEEEeecCCc-ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 408 PCKAEEPGILIGMIKESRA-ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 408 ~~~~~~~Gel~v~~~~~~~-~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+++.|+.|||+++ |+ ++++.|||++++.+.+.+ |...+|||+|||+|++|+||+|+|+||+||++
T Consensus 455 ~v~~g~~GEl~i~----g~~p~~~~gY~~~~e~~~~~~---~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I 520 (652)
T 1pg4_A 455 PQEGATEGNLVIT----DSWPGQARTLFGDHERFEQTY---FSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520 (652)
T ss_dssp BCCSSEEEEEEEC----SCCTTCCCEETTCHHHHHHHH---HSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred CcCCCceEEEEEc----cCCCchhhhhcCCHHHHHhhh---hhcCCCEEECCcEEEEcCCCcEEEEecCCCEE
Confidence 6688999999998 73 289999999987665443 23347899999999999999999999999975
No 14
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=9e-61 Score=483.77 Aligned_cols=390 Identities=19% Similarity=0.238 Sum_probs=316.6
Q ss_pred ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225 45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA 120 (479)
Q Consensus 45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~ 120 (479)
.+.++.++|+++++++|+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 83 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred CcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 4578999999999999999999987 999 999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225 121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT 199 (479)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (479)
+|++|.++.+++.+++++++++++|++.+....+.......+.+. ++..+... ..+.++.........
T Consensus 84 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~- 152 (509)
T 3ivr_A 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS----------GPFAPFKDLASDTPF- 152 (509)
T ss_dssp EECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC----------SSCEEGGGTCCCSCC-
T ss_pred EecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC----------cChhhHhhccCCCCC-
Confidence 999999999999999999999999999887776555545554443 33333211 112222221111111
Q ss_pred ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEE
Q psy8225 200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV 279 (479)
Q Consensus 200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v 279 (479)
......++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+|+...+...+..|++++
T Consensus 153 -~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~ 231 (509)
T 3ivr_A 153 -SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI 231 (509)
T ss_dssp -CCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred -CcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEE
Confidence 1145577899999999999999999999999999999888888999999999999999999998665555555555555
Q ss_pred ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEEecCCChhhHHHHHHHh-Ccceeeeeccccc
Q psy8225 280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRF-GLDRICEFYGATE 358 (479)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~G~~l~~~~~~~~~~~~-~~~~v~~~YG~tE 358 (479)
+ ..+++..+++.++++++|++..+|+++..|++.. ....++++|.+.++.- +++.+.+.+.+ +. ++++.||+||
T Consensus 232 ~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~-~~~~~~~~~~~~~~-~~~~~YG~TE 306 (509)
T 3ivr_A 232 A-AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDT-PETIERFEATCPNA-TFWATFGQSE 306 (509)
T ss_dssp C-SSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECC-HHHHHHHHHHCTTC-EEEEEEEEGG
T ss_pred e-cccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCC-hHHHHHHHHhcCCC-eEEcccCccc
Confidence 5 4889999999999999999999999999998876 3345788998872221 28889999998 55 9999999999
Q ss_pred cCccccc--CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225 359 GNANLMN--ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK 436 (479)
Q Consensus 359 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~ 436 (479)
+++.++. ....+.++|+|++ +++++++|++ ++ +|++|+.|||+++ |+ +++.||+++
T Consensus 307 ~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~-~~----------~~~~g~~GEl~v~----g~-~~~~gY~~~ 364 (509)
T 3ivr_A 307 TSGLSTFAPYRDRPKSAGRPLF------WRTVAVVDAE-DR----------PLPPGEVGEIVLR----GP-TVFKGYWNN 364 (509)
T ss_dssp GTEEEEEEEGGGSTTSCCEECT------TCEEEEECTT-SC----------BCCTTCCEEEEEE----ST-TSCCEETTC
T ss_pred cccccccCccccCCCcccccCC------CcEEEEECCC-CC----------CCCCCCceEEEEe----cC-CccccccCC
Confidence 9876543 2233445777665 7999999965 44 6799999999998 88 999999999
Q ss_pred chhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCC--CCCC
Q psy8225 437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT--GDAC 479 (479)
Q Consensus 437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~--~d~~ 479 (479)
++.+.+.|. +|||+|||+|++|+||+|+|+||+ ||++
T Consensus 365 ~~~t~~~f~------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~i 403 (509)
T 3ivr_A 365 AAATQHAFR------NGWHHTGDMGRFDADGYLFYAGRAPEKELI 403 (509)
T ss_dssp HHHHHHHTG------GGSEEEEEEEEECTTSCEEEEEEC------
T ss_pred HHHhHHHhh------cCCcccccEEEECCCceEEEeCCCCcceeE
Confidence 998888775 799999999999999999999999 8765
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2e-60 Score=486.23 Aligned_cols=396 Identities=22% Similarity=0.266 Sum_probs=326.4
Q ss_pred chhHHHHHHHhhc-----CCCccccEE-------E-Eeh-hhHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHH
Q psy8225 47 TYARPLFVRTIRE-----VPMTGAYKY-------T-VTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWL 111 (479)
Q Consensus 47 ~~l~~~l~~~~~~-----~p~~~a~~~-------~-~Ty-~l~~~~~~la~~L~~~-gi~~gd~V~i~~~n~~e~~~~~l 111 (479)
+++.++|+++++. +|+++|+++ . +|| ||.++++++|+.|+++ |+++||+|+++++|++++++++|
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~l 117 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVIL 117 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHH
Confidence 5678999999998 999999987 2 999 9999999999999999 99999999999999999999999
Q ss_pred HhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccC
Q psy8225 112 GLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEEL 190 (479)
Q Consensus 112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
||+++|++++|+++.++.+++.+++++++++++|++.+....+..+....+.++ +++++.... .....+++++
T Consensus 118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 191 (570)
T 3c5e_A 118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC------DGWLNFKKLL 191 (570)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC------TTSEEHHHHH
T ss_pred HHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc------cccccHHHHh
Confidence 999999999999999999999999999999999999887777766665565543 333332110 1122333333
Q ss_pred CcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHH--HhhhhhhhcCCCCCCeEEEeccchhhhhhHHHH
Q psy8225 191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF--MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGI 268 (479)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~ 268 (479)
........ .....++++++|+|||||||.||||+++|+ ++. ..... ..+++..+|++++.+|++|.+++...+
T Consensus 192 ~~~~~~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~ 266 (570)
T 3c5e_A 192 NEASTTHH---CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSL 266 (570)
T ss_dssp HHSCSCCC---CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTT
T ss_pred hccccccc---ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHH
Confidence 22221111 123467899999999999999999999999 444 33333 567788999999999999999987678
Q ss_pred HHHHhcCceEEecC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHH
Q psy8225 269 GQCLLGGSTVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKR 344 (479)
Q Consensus 269 ~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~ 344 (479)
+.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.. .....+++||.++ |+++++++.++|.+.
T Consensus 267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 88999999999876 689999999999999999999999999998863 2334578899876 899999999999999
Q ss_pred hCcceeeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEe
Q psy8225 345 FGLDRICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMI 421 (479)
Q Consensus 345 ~~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~ 421 (479)
++. ++++.||+||++..++.. ...++++|+|++ +++++++|++ ++ +|+.|+.|||++++
T Consensus 346 ~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~------~~~v~i~d~~-g~----------~~~~G~~GEl~v~~ 407 (570)
T 3c5e_A 346 TGL-DIRESYGQTETGLTCMVSKTMKIKPGYMGTAAS------CYDVQIIDDK-GN----------VLPPGTEGDIGIRV 407 (570)
T ss_dssp HSC-CCEEEEEETTTEEEEECCTTSCCCTTCCCEECT------TCCEEEECTT-SC----------BCCTTCCEEEEEEC
T ss_pred hCC-chhhccchhhcccceecCcccccCCCcccccCC------CceEEEECCC-CC----------CCCCCCCCeeEEec
Confidence 998 899999999998665433 245577777665 7899999955 54 67899999999984
Q ss_pred ec-CCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 422 KE-SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 422 ~~-~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
.. +|+ +++.||+++++.+.+.|. +|||+|||+|++|+||+|+|+||+||++
T Consensus 408 ~~~~g~-~v~~GY~~~~~~t~~~f~------~~~~~TGDlg~~d~dG~l~~~GR~dd~I 459 (570)
T 3c5e_A 408 KPIRPI-GIFSGYVDNPDKTAANIR------GDFWLLGDRGIKDEDGYFQFMGRADDII 459 (570)
T ss_dssp SSBCCT-TCCCEETTCHHHHHHTEE------TTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred cCCCCc-hhhccccCChhHhhhhhc------CCccccceeEEEcCCceEEEEecCCCEE
Confidence 32 255 899999999988887664 7899999999999999999999999985
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.5e-60 Score=482.82 Aligned_cols=397 Identities=19% Similarity=0.244 Sum_probs=318.1
Q ss_pred cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225 46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA 121 (479)
Q Consensus 46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v 121 (479)
.+++.++|+++++ +|+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 3668999999999 9999999975 999 9999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcc--eEEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225 122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGI--SLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT 199 (479)
Q Consensus 122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (479)
|+++.++.+++.+++++++++++|++.+....+.......+.. .+++.+..... ......++++.........
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~- 176 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE----PRLAPLFEELIDAAAPAAK- 176 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC----------CCCBHHHHHHTSCCCSS-
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc----cccccchhhhhccCCCccc-
Confidence 9999999999999999999999999988766665554333322 23332221100 0001123333221111111
Q ss_pred ccccCCCCCCcEEEEEccCCCCCcceEEeehHHH-HHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225 200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRA-MFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV 278 (479)
Q Consensus 200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~ 278 (479)
.....++++++++|||||||.||||+++|+++ ..........+++..+|++++.+|++|.+|+...++.++..|+++
T Consensus 177 --~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 254 (529)
T 2v7b_A 177 --AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATA 254 (529)
T ss_dssp --CCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEE
T ss_pred --ccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEE
Confidence 13346789999999999999999999999999 566555555677889999999999999999877777889999999
Q ss_pred Eec-CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225 279 VIR-SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355 (479)
Q Consensus 279 v~~-~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG 355 (479)
++. +.+++..+++.++++++|++.++|+++..+++..........++|.++ |+++++++.+++++.++. ++++.||
T Consensus 255 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~-~i~~~YG 333 (529)
T 2v7b_A 255 ILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIG 333 (529)
T ss_dssp ECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSC-CEEEEEE
T ss_pred EEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceeeeEc
Confidence 987 578999999999999999999999999999887654433234788876 899999999999999998 8999999
Q ss_pred ccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccc
Q psy8225 356 ATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432 (479)
Q Consensus 356 ~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~g 432 (479)
+||++..+... ....+++|+|++ +++++++|++ ++ +|++|+.|||+++ |+ +++.|
T Consensus 334 ~TE~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~-g~----------~~~~g~~GEl~v~----g~-~~~~g 391 (529)
T 2v7b_A 334 STEMLHIFLSNRAGAVEYGTTGRPVP------GYEIELRDEA-GH----------AVPDGEVGDLYIK----GP-SAAVM 391 (529)
T ss_dssp CTTTSSEEEECCTTCCCTTSCCEECT------TCEEEEECTT-SC----------BCCTTSCEEEEEE----CT-TCCCC
T ss_pred hhhcCceeeccccCCCccCCcccCCC------CCEEEEECCC-CC----------CCCCCCccEEEEe----cC-Ccccc
Confidence 99996554322 234567777665 7999999954 55 6789999999998 88 89999
Q ss_pred ccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 433 Y~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||++
T Consensus 392 Y~~~~~~t~~~f~------~~~~~TGDl~~~~~~G~l~~~GR~dd~i 432 (529)
T 2v7b_A 392 YWNNREKSRATFL------GEWIRSGDKYCRLPNGCYVYAGRSDDML 432 (529)
T ss_dssp BTTCHHHHHHHEE------TTEEEEEEEEEECTTSCEEEEEEGGGCB
T ss_pred cCCChHHHHHhhh------cCCcccCceEEECCCccEEEeCccCCeE
Confidence 9999988887764 7899999999999999999999999985
No 17
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.4e-60 Score=517.22 Aligned_cols=405 Identities=21% Similarity=0.267 Sum_probs=336.7
Q ss_pred cchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225 46 PTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV 119 (479)
Q Consensus 46 ~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~ 119 (479)
+.++.++|.++++++|+++|+++. +|| ||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 367999999999999999999984 999 99999999999999999999999999999999999999999999999
Q ss_pred eeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225 120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT 199 (479)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (479)
++|++|.++.+++.++++++++++||++....+.+..+.... ...++.++.... .........+.++..........
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 216 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GVVIVCIDDNES--VPIPEGCLRFTELTQSTTEASEV 216 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CCEEEECCCCTT--SCCCTTEEEGGGTSSCCSGGGGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-CceEEEeCCccc--ccCCcccccHHHHhhcccccccc
Confidence 999999999999999999999999999987665554443332 344454443211 11112334455544432221111
Q ss_pred ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh----hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225 200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY----QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGG 275 (479)
Q Consensus 200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G 275 (479)
.......++++++|+|||||||.||||+++|+++...+..... .+.+..+|++++.+|++|.+++...++.++..|
T Consensus 217 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G 296 (979)
T 3tsy_A 217 IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVG 296 (979)
T ss_dssp SCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred CCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence 1113457889999999999999999999999999887765443 456788999999999999999877788899999
Q ss_pred ceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeee
Q psy8225 276 STVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEF 353 (479)
Q Consensus 276 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~ 353 (479)
+++++.+.+++..+++.++++++|++.++|+++..|.+........+++||.++ |+++++++.+++.+.|+..++++.
T Consensus 297 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~ 376 (979)
T 3tsy_A 297 AAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQG 376 (979)
T ss_dssp CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEEC
T ss_pred cEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEee
Confidence 999999999999999999999999999999999999988776666789999887 889999999999999944499999
Q ss_pred ccccccCccccc--------CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCC
Q psy8225 354 YGATEGNANLMN--------ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR 425 (479)
Q Consensus 354 YG~tE~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~ 425 (479)
||+||++.++.. .+...+++|+|++ +++++++|+++++ ++++|+.|||+++ |
T Consensus 377 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~~~----------~~~~g~~GEl~i~----g 436 (979)
T 3tsy_A 377 YGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVR------NAEMKIVDPDTGD----------SLSRNQPGEICIR----G 436 (979)
T ss_dssp EECGGGCSEEEECGGGSSSCCCCCTTCCCEECS------SCEEEEECTTSCC----------BCCTTCCEEEEEE----S
T ss_pred echhhhhHHHHhCCCCCCCccccCCCCcCcccC------CcEEEEEeCCCCC----------CCCCCCccEEEEE----C
Confidence 999999865432 1234567777665 8999999988777 6789999999998 8
Q ss_pred cccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 426 ~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+ +++.|||++++.+.+.|. .+|||+|||+|++|+||+|+|+||+||++
T Consensus 437 ~-~v~~GY~~~p~~t~~~f~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 484 (979)
T 3tsy_A 437 H-QIMKGYLNNPAATAETID-----KDGWLHTGDIGLIDDDDELFIVDRLKELI 484 (979)
T ss_dssp T-TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEESCC--
T ss_pred C-CccccccCChhhhhhhcc-----CCCcEEcCCEEEEcCCceEEEecCCCCEE
Confidence 8 999999999988887764 38999999999999999999999999986
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.2e-60 Score=485.18 Aligned_cols=379 Identities=17% Similarity=0.166 Sum_probs=307.0
Q ss_pred chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225 47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122 (479)
Q Consensus 47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~ 122 (479)
.++.++|.++++++|+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 118 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVP 118 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEE
Confidence 57999999999999999999986 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI 202 (479)
Q Consensus 123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (479)
+++.++.+++.+++++++++++|++.+....+..+.. ...+....... +. ....... .
T Consensus 119 l~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~~~~------------~~----~~~~~~~---~ 176 (563)
T 1amu_A 119 IDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF---NGQVEIFEEDT------------IK----IREGTNL---H 176 (563)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC---CSEEEECCCST------------TT----TSCCSCC---C
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc---cCceeeecchh------------hc----cccCccC---C
Confidence 9999999999999999999999999876544332211 11122211100 00 0000000 1
Q ss_pred cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225 203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282 (479)
Q Consensus 203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 282 (479)
....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|..++ +.++.++..|+++++.+
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~ 255 (563)
T 1amu_A 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIIL 255 (563)
T ss_dssp CCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECC
T ss_pred CCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcC
Confidence 23456889999999999999999999999999888877778889999999999999999886 56778999999999987
Q ss_pred C---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccc
Q psy8225 283 K---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT 357 (479)
Q Consensus 283 ~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~t 357 (479)
. +++..+++.++++++|++.++|+++..|... .++++|.++ |+++++++.++|.+. . .+++.||+|
T Consensus 256 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~--~-~~~~~YG~T 326 (563)
T 1amu_A 256 KDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK--V-TYINAYGPT 326 (563)
T ss_dssp HHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT--S-EEEEEECCG
T ss_pred hHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC--C-eEEEEECcC
Confidence 5 6899999999999999999999998776432 357888776 889999999999874 4 899999999
Q ss_pred ccCcccccCC------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225 358 EGNANLMNAD------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN 431 (479)
Q Consensus 358 E~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~ 431 (479)
|++..++... ....++|+|++ +++++++|++ ++ +++.|+.|||+++ |+ +++.
T Consensus 327 E~~~~~~~~~~~~~~~~~~~~vG~p~~------~~~v~i~d~~-~~----------~~~~g~~GEl~v~----g~-~v~~ 384 (563)
T 1amu_A 327 ETTICATTWVATKETIGHSVPIGAPIQ------NTQIYIVDEN-LQ----------LKSVGEAGELCIG----GE-GLAR 384 (563)
T ss_dssp GGSSCSEEEECCSSCCCSSCCCBEECT------TEEEEEECTT-SC----------BCCTTCEEEEEEE----ET-TCCC
T ss_pred HHhHhheeeecccccCCCCCcccceeC------CCEEEEECCC-cC----------CCCCCCcEEEEEe----ch-hhCh
Confidence 9986654321 23345666554 8999999954 44 6789999999998 77 9999
Q ss_pred cccCcchhHHHHHh-hhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 432 GYADKKASEKKILR-NVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 432 gY~~~~~~~~~~~~-~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
|||++++.+.+.|. +++.+++|||+|||+|++|+||+|+|+||+||++
T Consensus 385 GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~I 433 (563)
T 1amu_A 385 GYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQV 433 (563)
T ss_dssp EETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred hhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEE
Confidence 99999888877663 3444567899999999999999999999999974
No 19
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.2e-60 Score=478.09 Aligned_cols=391 Identities=17% Similarity=0.165 Sum_probs=306.3
Q ss_pred ccchhHHHHHHHhhcCCCccccEE-----------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q psy8225 45 LPTYARPLFVRTIREVPMTGAYKY-----------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWL 111 (479)
Q Consensus 45 ~~~~l~~~l~~~~~~~p~~~a~~~-----------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~l 111 (479)
...++.++|.++++++|+++|+++ . +|| ||.++++++|+.|+++|+ +||+|+++++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 457799999999999999999986 4 999 999999999999999996 99999999999999999999
Q ss_pred HhhhcCceeeeecC---CcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCc---ceEEecCCCCCCCccCCCcccc
Q psy8225 112 GLSKIGVVAAFINT---NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG---ISLYAAGTRRKPQAKVLPSTTL 185 (479)
Q Consensus 112 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 185 (479)
||+++|++++|+++ .++.+++.+++++++++++|++......+.+.....+. ..++..+.
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 166 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL-------------- 166 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG--------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc--------------
Confidence 99999999999999 78899999999999999999998877766665443321 12222211
Q ss_pred ccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCC------CCeEEEeccch
Q psy8225 186 LDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS------DDVVYTTLPLY 259 (479)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~d~~~~~~pl~ 259 (479)
........ .......++++++|+|||||||.||||++||+++...+......+.+.. ++++++.+|++
T Consensus 167 ---~~~~~~~~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 240 (480)
T 3t5a_A 167 ---LDLDAPNG---YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFY 240 (480)
T ss_dssp ---SCTTCC------CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTT
T ss_pred ---cccccccC---CCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCc
Confidence 10000000 0113456789999999999999999999999999998888777777776 89999999999
Q ss_pred hhhhhHHHHHHHHhcCceEEecCCC----ChhHHHHHHHHhcccEEEEehHHHHHHhcC----CCCCCCCCCceeEEE--
Q psy8225 260 HTAGGLLGIGQCLLGGSTVVIRSKF----SASNFWKDCIKYNCTVAQYIGEMCRYLLAV----PEKPEDTQHSVKMMI-- 329 (479)
Q Consensus 260 h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~----~~~~~~~l~~lr~~~-- 329 (479)
|.+|++..++.++..|+++++.+.+ ++..+++.++++++| +..+|+++..++.. .......+++||.++
T Consensus 241 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~g 319 (480)
T 3t5a_A 241 HDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSG 319 (480)
T ss_dssp STTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEEC
T ss_pred CccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeec
Confidence 9999878888999999999998753 899999999999999 78889888877653 233345688999877
Q ss_pred ecCCChhhHHHHHHHhCc-----ceeeeeccccccCcccccCCCC-C---------------------CcccccCccccC
Q psy8225 330 GNGLRPQVWEPFQKRFGL-----DRICEFYGATEGNANLMNADGK-V---------------------GAVGYIPYIAIP 382 (479)
Q Consensus 330 G~~l~~~~~~~~~~~~~~-----~~v~~~YG~tE~~~~~~~~~~~-~---------------------~~~g~~~~~~~~ 382 (479)
|+++++++.++|.+.++. ..+++.||+||++..++..... + +....+.+++.+
T Consensus 320 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p 399 (480)
T 3t5a_A 320 SERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP 399 (480)
T ss_dssp CTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECC
T ss_pred CCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcc
Confidence 889999999999999842 3799999999998766532211 0 001122234445
Q ss_pred CCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhh------ccCCCcEEE
Q psy8225 383 FYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNV------YSHGDAAFN 456 (479)
Q Consensus 383 ~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~------~~~~~g~~~ 456 (479)
.+ ++++|+|+++++ +|+.|+.|||+++ || +++.|||++++.+++.|... ..+++|||+
T Consensus 400 ~~-~~~~ivd~~~g~----------~~~~g~~GEl~v~----g~-~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~ 463 (480)
T 3t5a_A 400 RS-PIVRIVDSDTCI----------ECPDGTVGEIWVH----GD-NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463 (480)
T ss_dssp SS-SEEEEEETTTTE----------ECCTTBCEEEEEE----ST-TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEE
T ss_pred cC-CEEEEEcCCCCc----------CCCCCCEEEEEEe----CC-ccccccccCcchhHHHHhhhhccccCCCCCCCeee
Confidence 55 889999987766 6799999999999 88 99999999999888877410 112478999
Q ss_pred cCCeeEEecCCcEEEecC
Q psy8225 457 TGDILIKDKFQYFYFKDR 474 (479)
Q Consensus 457 TGD~g~~d~dG~l~~~GR 474 (479)
|||+|++| ||+|+|+||
T Consensus 464 TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 464 TGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEEEEE-TTEEEECC-
T ss_pred ccceeeEE-CCEEEEeCC
Confidence 99999997 999999999
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.2e-60 Score=483.29 Aligned_cols=384 Identities=18% Similarity=0.222 Sum_probs=315.6
Q ss_pred hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225 48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123 (479)
Q Consensus 48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l 123 (479)
++.++|+++++++|+++|+++. +|| ||.++++++|.+|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl 81 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPV 81 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 5889999999999999999987 999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccccc
Q psy8225 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIK 203 (479)
Q Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (479)
++.++.+++.++++.++++++|++..... ... ...++... .+............. ...
T Consensus 82 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~ 139 (512)
T 3fce_A 82 DLSIPADRVQRIAENSGAKLLLSATAVTV------TDL-PVRIVSED--------------NLKDIFFTHKGNTPN-PEH 139 (512)
T ss_dssp ETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCC-SSEEEETH--------------HHHHHHHHTTTCCCC-GGG
T ss_pred CCCCcHHHHHHHHHhcCCCEEEecCcccc------ccc-ccceechh--------------hhhhhcccccccCCC-ccc
Confidence 99999999999999999999999753210 000 11111100 011111101111111 113
Q ss_pred CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC
Q psy8225 204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK 283 (479)
Q Consensus 204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~ 283 (479)
...++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|..++ ..++.++..|+++++.+.
T Consensus 140 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 140 AVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp SCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCH
T ss_pred cCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCH
Confidence 4567899999999999999999999999999998888888899999999999999999986 567889999999999886
Q ss_pred ---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225 284 ---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358 (479)
Q Consensus 284 ---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE 358 (479)
+++..+++.++++++|++.++|+++..++.........++++|.++ |+++++++.+++.+.|+..++++.||+||
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE 298 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccCh
Confidence 6899999999999999999999999999888776666788999877 89999999999999995449999999999
Q ss_pred cCcccccCC--------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccc
Q psy8225 359 GNANLMNAD--------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF 430 (479)
Q Consensus 359 ~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~ 430 (479)
+++.++... ....++|+|.+ +++++++|++ |+ ++++|+.|||+++ || +++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-g~----------~~~~g~~GEl~v~----g~-~v~ 356 (512)
T 3fce_A 299 ATVAVTGIHVTEEVLDQYKSLPVGYCKS------DCRLLIMKED-GT----------IAPDGEKGEIVIV----GP-SVS 356 (512)
T ss_dssp GSSCSEEEECCHHHHHHCSSCCCEEECT------TCEEEEECSS-SC----------BCCTTSCEEEEEE----ST-TSC
T ss_pred hhhheeeEEeccccccccCCCccccccC------CcEEEEECCC-CC----------CCCCCCeEEEEEe----cc-ccC
Confidence 987654321 24456676655 7999999844 55 6789999999998 88 999
Q ss_pred ccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 431 ~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
.|||++++.+++.|. ..+++|||+|||+|++ +||+|+|+||+||++
T Consensus 357 ~GY~~~~~~t~~~f~--~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~i 402 (512)
T 3fce_A 357 VGYLGSPELTEKAFT--MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQI 402 (512)
T ss_dssp SCBTTCHHHHHHHEE--EETTEEEEEEEEEEEE-ETTEEEEEEEGGGCE
T ss_pred hhhcCCchhhhhccc--cCCCCEEEeCCceEEe-cCCEEEEecccCCEE
Confidence 999999988887663 1245789999999999 899999999999985
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=8.1e-60 Score=482.68 Aligned_cols=380 Identities=18% Similarity=0.221 Sum_probs=305.9
Q ss_pred chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225 47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122 (479)
Q Consensus 47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~ 122 (479)
.++.++|+++++++|+++|+++. +|| ||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 75 ~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp 154 (570)
T 4gr5_A 75 ACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTM 154 (570)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEE
Confidence 57999999999999999999987 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI 202 (479)
Q Consensus 123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (479)
++|.++.+++.+++++++++++|++..... .......+...+.. ....... ...
T Consensus 155 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~---~~~ 208 (570)
T 4gr5_A 155 LDPQFPVERLALSLEDTGAPLLVTSRPLSG-------RLTGTTTLYVEDEA----------------ASDAPAG---NLA 208 (570)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTTTT-------SSCSSEEEECCC-----------------------CC---CCC
T ss_pred cCCCChHHHHHHHHHhcCCCEEEecchhhh-------cccCCcceeeeccc----------------ccccccc---ccC
Confidence 999999999999999999999999875432 11222211111100 0000000 001
Q ss_pred cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225 203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282 (479)
Q Consensus 203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 282 (479)
....++++++|+|||||||.||||+++|+++...... ...+++..+|++++.+|++|..+. ..++.++..|+++++.+
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~ 286 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQS 286 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECS
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcC
Confidence 3456789999999999999999999999999766554 345678899999999999987654 56778999999999876
Q ss_pred --CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225 283 --KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358 (479)
Q Consensus 283 --~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE 358 (479)
.+++..+++.|+++++|++.++|++++.|.+... ..+++||.++ |+++++++.+++.+.++..++++.||+||
T Consensus 287 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE 363 (570)
T 4gr5_A 287 GQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE 363 (570)
T ss_dssp SSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred CccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhh
Confidence 4689999999999999999999999999987543 2578899877 88999999999999885449999999999
Q ss_pred cCcccccC-------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225 359 GNANLMNA-------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN 431 (479)
Q Consensus 359 ~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~ 431 (479)
+++.++.. .....++|+|++ +++++|+|++ ++ +++.|+.|||+++ || +++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~iG~p~~------~~~v~i~d~~-~~----------~~~~G~~GEl~v~----g~-~v~~ 421 (570)
T 4gr5_A 364 SMGFTTHHAVVAGDLSGTALPIGVPLA------GKRAYVLDDD-LK----------PAANGALGELYVA----GA-GLAH 421 (570)
T ss_dssp GCSCSEEEECCGGGTTSSSCCCBEECT------TEEEEEECTT-SC----------BCCTTCEEEEEEE----ET-TCCC
T ss_pred heeeeeeeeecccccCCCccccceeeC------CCEEEEECCC-CC----------CCCCCCcEEEEEe----ec-ccch
Confidence 98665421 123344566554 8999999954 44 6789999999999 77 9999
Q ss_pred cccCcchhHHHHHh-hhcc--CCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 432 GYADKKASEKKILR-NVYS--HGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 432 gY~~~~~~~~~~~~-~~~~--~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
|||++++.+.+.|. +.|. +++|||+|||+|++|+||+|+|+||+||++
T Consensus 422 GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~I 472 (570)
T 4gr5_A 422 GYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQV 472 (570)
T ss_dssp EETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----
T ss_pred hcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEE
Confidence 99999888877663 2221 245899999999999999999999999985
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.1e-59 Score=483.72 Aligned_cols=397 Identities=16% Similarity=0.196 Sum_probs=323.6
Q ss_pred hcccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225 43 KTLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV 118 (479)
Q Consensus 43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 118 (479)
.+...++.++|.++++ |+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 3445779999999988 999999987 999 9999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcC
Q psy8225 119 VAAFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEV 193 (479)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (479)
+++|+++..+.+++.++++++++++++++.... ..........+.+..+....... ...+.+.....
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 172 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG--------EHNLQDAINHP 172 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS--------TTBHHHHHHSC
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc--------ccchhhhhccc
Confidence 999999999999999999999999999987543 23333333334333332221110 11111211111
Q ss_pred CCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH-HHHHHH
Q psy8225 194 SAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL-GIGQCL 272 (479)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~~l 272 (479)
..... .....++++++|+|||||||.||||+++|+++...+......+++..++++++.+|++|.+++.. .++.++
T Consensus 173 ~~~~~---~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l 249 (617)
T 3rg2_A 173 AEDFT---ATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVF 249 (617)
T ss_dssp CSSCC---CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred ccccC---CCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHH
Confidence 11111 13346789999999999999999999999999999988888889999999999999999988754 578899
Q ss_pred hcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC--CCCCCceeEEE--ecCCChhhHHHHHHHhCcc
Q psy8225 273 LGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP--EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLD 348 (479)
Q Consensus 273 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~--~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~ 348 (479)
..|+++++.+.+++..+++.++++++|++.++|+++..|.+..... ...+++||.++ |+++++++.+++.+.++.
T Consensus 250 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~- 328 (617)
T 3rg2_A 250 LAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC- 328 (617)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCS-
T ss_pred HcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCC-
Confidence 9999999999899999999999999999999999999887653222 23578899876 899999999999999998
Q ss_pred eeeeeccccccCcccccCCCC----CCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecC
Q psy8225 349 RICEFYGATEGNANLMNADGK----VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424 (479)
Q Consensus 349 ~v~~~YG~tE~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~ 424 (479)
++++.||+||++..+...... ..++|+|+. ++.++.++|++ ++ +|+.|+.|||+++
T Consensus 329 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~-----~~~~~~i~d~~-~~----------~~p~G~~GEl~i~---- 388 (617)
T 3rg2_A 329 QLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMC-----PDDEVWVADAE-GN----------PLPQGEVGRLMTR---- 388 (617)
T ss_dssp EEEEEEEETTEEEEECCTTSCHHHHHHCCCEESC-----TTCEEEEECTT-SC----------BCCTTCCEEEEEE----
T ss_pred cEEEEeccCcceeecccCCCcccccccCCCccCC-----CCceEEEECCC-CC----------CCCCCCceEEEec----
Confidence 999999999988655443321 234566542 25788888854 44 6799999999998
Q ss_pred CcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 425 ~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
|+ +++.||+|+++.+.+.|. .++||+|||+|++|+||+|+|+||+||+|
T Consensus 389 G~-~v~~GY~~~p~~t~~~f~-----~~~~yrTGDl~~~~~dG~l~~~GR~dd~i 437 (617)
T 3rg2_A 389 GP-YTFRGYYKSPQHNASAFD-----ANGFYCSGDLISIDPEGYITVQGREKDQI 437 (617)
T ss_dssp CS-SSCSCCTTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEECSSEE
T ss_pred Cc-cccchhcCChhhhhhccC-----CCCceecCceEEEcCCceEEEEeecCCEE
Confidence 88 999999999998887764 37999999999999999999999999985
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7.7e-60 Score=478.51 Aligned_cols=384 Identities=17% Similarity=0.176 Sum_probs=314.1
Q ss_pred chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225 47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122 (479)
Q Consensus 47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~ 122 (479)
.++.++|+++++++|+++|+.+. +|| ||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vp 83 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIP 83 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 56889999999999999999987 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI 202 (479)
Q Consensus 123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (479)
+++.++.+++.++++.++++++|++.+.... .....++... .+.......... ...
T Consensus 84 l~~~~~~~~l~~il~~~~~~~ii~~~~~~~~-------~~~~~~~~~~--------------~~~~~~~~~~~~---~~~ 139 (521)
T 3l8c_A 84 VDVHSAPERILAIIEIAKPSLIIAIEEFPLT-------IEGISLVSLS--------------EIESAKLAEMPY---ERT 139 (521)
T ss_dssp EETTSCHHHHHHHHHHSCCSEEEESSCCCSC-------CTTSEEEEHH--------------HHHHHHHHTCCC---CCS
T ss_pred cCccccHHHHHHHHHhCCCCEEEecCccccc-------cccCcccchh--------------hhhhcccccCCc---ccC
Confidence 9999999999999999999999998653211 1111111110 000000000000 011
Q ss_pred cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh--cCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225 203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ--TGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280 (479)
Q Consensus 203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~ 280 (479)
....++++++|+|||||||.||||+++|+++...+...... +++..++++++..|++|..++ ..++.++..|+++++
T Consensus 140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~ 218 (521)
T 3l8c_A 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFA 218 (521)
T ss_dssp SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEE
T ss_pred CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEE
Confidence 34567899999999999999999999999999877766554 677889999999999998875 557778999999998
Q ss_pred cCCC---ChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225 281 RSKF---SASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355 (479)
Q Consensus 281 ~~~~---~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG 355 (479)
.+.+ ++..+++.+.++++|++.++|+++..+..........++++|.++ |+++++++.+++.+.++..++++.||
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG 298 (521)
T 3l8c_A 219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYG 298 (521)
T ss_dssp CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcC
Confidence 8754 889999999999999999999999999887766666788999877 89999999999999994449999999
Q ss_pred ccccCcccccC--------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcc
Q psy8225 356 ATEGNANLMNA--------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427 (479)
Q Consensus 356 ~tE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~ 427 (479)
+||+++.++.. .....++|+|++ +++++++|++ |. +++.|+.|||+++ ||
T Consensus 299 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~------~~~~~i~d~~-g~----------~~~~g~~GEl~v~----g~- 356 (521)
T 3l8c_A 299 PTEATVALSAIEITREMVDNYTRLPIGYPKP------DSPTYIIDED-GK----------ELSSGEQGEIIVT----GP- 356 (521)
T ss_dssp CGGGSSCSEEEEECHHHHHHCSSCEEEEECT------TSCEEEECTT-SC----------BCCTTCCEEEEEE----ST-
T ss_pred ccHHhhhhceeecccccccCCCccccccccC------CCEEEEECCC-cC----------CCCCCCceEEEec----cc-
Confidence 99998765431 124456777665 7999999954 54 6789999999998 88
Q ss_pred cccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 428 ~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+++.|||++++.+.+.|.. .+++|||+|||+|++|+||+|+|.||+||++
T Consensus 357 ~v~~GY~~~~~~t~~~f~~--~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i 406 (521)
T 3l8c_A 357 AVSKGYLNNPEKTAEAFFT--FKGQPAYHTGDIGSLTEDNILLYGGRLDFQI 406 (521)
T ss_dssp TSCSCBTTCHHHHHHHEEE--ETTEEEEEEEEEEEECSSSCEEEEEEGGGBC
T ss_pred ccChhhcCCchHhhccCcC--CCCceeeeCCCEEEEeCCCeEEEeCcccceE
Confidence 9999999999888876521 1357899999999999999999999999986
No 24
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1e-59 Score=485.08 Aligned_cols=391 Identities=19% Similarity=0.208 Sum_probs=315.7
Q ss_pred ccchhHHHHHHHhhcCCCccccEE------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225 45 LPTYARPLFVRTIREVPMTGAYKY------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI 116 (479)
Q Consensus 45 ~~~~l~~~l~~~~~~~p~~~a~~~------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~ 116 (479)
.+.++.++|+++++.+|+++|+++ . +|| ||.++++++|..|+++|+++||+|+++++|++++++++|||+++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 446799999999999999999986 2 999 99999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCc---chHHHHHHHHhccceEEEeChhhHHHHHHhh-ccCCc---ceEEecCCCCCCCccCCCcccccccc
Q psy8225 117 GVVAAFINTNQ---RQHILIHSIKVAECKAIIYGAELSEALTEVK-DSIPG---ISLYAAGTRRKPQAKVLPSTTLLDEE 189 (479)
Q Consensus 117 G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (479)
|++++|++|.. +.+++.++++.+++++++++.+....+.... ...+. +.++. .+.+
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 151 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA-----------------LESI 151 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE-----------------GGGC
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee-----------------chhc
Confidence 99999999987 5678999999999999999987655443321 11111 11111 1111
Q ss_pred CCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHH
Q psy8225 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG 269 (479)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~ 269 (479)
........ ......++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+|+...++
T Consensus 152 ~~~~~~~~---~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 228 (590)
T 3kxw_A 152 ELNRSSSW---QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCIL 228 (590)
T ss_dssp CGGGGGGC---CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred cccccccC---CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHH
Confidence 10000000 013456789999999999999999999999999999998888899999999999999999999876688
Q ss_pred HHHhcCceEEecCCC----ChhHHHHHHHHhcccEEEEehHHHHHHhcCC---CCCCCCCCceeEEE--ecCCChhhHHH
Q psy8225 270 QCLLGGSTVVIRSKF----SASNFWKDCIKYNCTVAQYIGEMCRYLLAVP---EKPEDTQHSVKMMI--GNGLRPQVWEP 340 (479)
Q Consensus 270 ~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~---~~~~~~l~~lr~~~--G~~l~~~~~~~ 340 (479)
.++..|+++++.+.+ ++..+++.++++++|++.++|+++..+.+.. ......+++||.++ |+++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 899999999998865 7999999999999999999999998887653 23345678999877 89999999999
Q ss_pred HHHHhCc-----ceeeeeccccccCcccccCC------------------------------CCCCcccccCccccCCCc
Q psy8225 341 FQKRFGL-----DRICEFYGATEGNANLMNAD------------------------------GKVGAVGYIPYIAIPFYP 385 (479)
Q Consensus 341 ~~~~~~~-----~~v~~~YG~tE~~~~~~~~~------------------------------~~~~~~g~~~~~~~~~~~ 385 (479)
|.+.++. .++++.||+||++..++... ....++|+|++ +
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~------~ 382 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ------E 382 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESS------E
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCC------C
Confidence 9999842 27999999999987654211 11234455443 5
Q ss_pred eeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccC---CCcEEEcCCeeE
Q psy8225 386 VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSH---GDAAFNTGDILI 462 (479)
Q Consensus 386 ~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~---~~g~~~TGD~g~ 462 (479)
++++|+++++ +|+.|+.|||+++ || +++.|||++++.+++.|.+.+.+ +++||+|||+|+
T Consensus 383 --v~i~d~~~~~----------~~~~g~~GEl~v~----g~-~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~ 445 (590)
T 3kxw_A 383 --VKIIDPDTLI----------PCDFDQVGEIWVQ----SN-SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF 445 (590)
T ss_dssp --EEEECTTTCC----------BCCTTBCEEEEEE----ST-TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEE
T ss_pred --eEEEcCCCCc----------CCCCCCEEEEEEe----CC-cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEE
Confidence 7778887666 6799999999999 88 99999999999888877532221 233999999999
Q ss_pred EecCCcEEEecCCCCCC
Q psy8225 463 KDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 463 ~d~dG~l~~~GR~~d~~ 479 (479)
+| ||+|+|+||+||++
T Consensus 446 ~d-dG~l~~~GR~dd~I 461 (590)
T 3kxw_A 446 LH-ENELYVTGRIKDLI 461 (590)
T ss_dssp EE-TTEEEEEEESSCHH
T ss_pred EE-CCEEEEEcCccceE
Confidence 99 99999999999974
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.1e-59 Score=482.02 Aligned_cols=381 Identities=16% Similarity=0.175 Sum_probs=309.8
Q ss_pred ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225 45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA 120 (479)
Q Consensus 45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~ 120 (479)
...++.++|.++++++|+++|+++. +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~ 104 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY 104 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 3467999999999999999999987 999 999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225 121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200 (479)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (479)
+|++|.++.+++.++++++++++++++...... ........ +...... ....
T Consensus 105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~-------~~~~~~~~-----------------~~~~~~~----~~~~ 156 (620)
T 4dg8_A 105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP-------ANGLPCVP-----------------VRHLPAA----PASV 156 (620)
T ss_dssp EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC-------CTTSCEEE-----------------GGGCCCC----CCCS
T ss_pred EeeCccChHHHHHHHHHhCCCcEEEecCccccc-------ccCCceee-----------------eccCCcC----Cccc
Confidence 999999999999999999999999976432110 00111110 0000000 0000
Q ss_pred cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280 (479)
Q Consensus 201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~ 280 (479)
......++++++|+|||||||.||||+++|+++.+.+.. ...+++.+++++++.+|++|..++ ..++.++..|+++++
T Consensus 157 ~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~ 234 (620)
T 4dg8_A 157 ARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVL 234 (620)
T ss_dssp SCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEE
T ss_pred cCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEe
Confidence 113346789999999999999999999999999876655 456778899999999999999986 568889999999998
Q ss_pred cC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225 281 RS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA 356 (479)
Q Consensus 281 ~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~ 356 (479)
.+ .+++..+++.++++++|++.++|++++.|.+.. ...+++||.++ |+++++++.+++.+.++..++++.||+
T Consensus 235 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 311 (620)
T 4dg8_A 235 NDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGP 311 (620)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred CccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEch
Confidence 64 579999999999999999999999999988643 23578899876 889999999998888744499999999
Q ss_pred cccCcccccC-------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccc
Q psy8225 357 TEGNANLMNA-------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429 (479)
Q Consensus 357 tE~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~ 429 (479)
||++..++.. .....++|+|++ +++++++|++... .++.|+.|||+++ |+ ++
T Consensus 312 TE~~~~~~~~~~~~~~~~~~~~~iG~p~~------~~~~~i~d~~~~~----------~~~~g~~GEl~i~----G~-~v 370 (620)
T 4dg8_A 312 TENTTFTCCHVVTDDDLEEDDIPIGKAIA------GTAVLLLDEHGQE----------IAEPDRAGEIVAF----GA-GL 370 (620)
T ss_dssp GGGCSCSEEEECCTGGGGSSSCCCBEECT------TEEEEEECTTSCB----------CCSSSCCEEEEEE----ET-TC
T ss_pred hhhhhheEEEeccccccCCCCCCceeccc------CcEEEEECccCCC----------CCCCCCceEEEEe----cc-cc
Confidence 9998665421 123345666554 8999999976433 3688999999998 77 99
Q ss_pred cccccCcchhHHHHHhhhccCCC--cEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 430 FNGYADKKASEKKILRNVYSHGD--AAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 430 ~~gY~~~~~~~~~~~~~~~~~~~--g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+.||+|+++.+.+.|...-.++. +||+|||+|++|+||+|+|+||+||+|
T Consensus 371 ~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~I 422 (620)
T 4dg8_A 371 AQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQV 422 (620)
T ss_dssp CSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEE
T ss_pred ccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEE
Confidence 99999999888877643111222 799999999999999999999999985
No 26
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.6e-59 Score=472.08 Aligned_cols=381 Identities=18% Similarity=0.229 Sum_probs=316.9
Q ss_pred hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225 48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122 (479)
Q Consensus 48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~-gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~ 122 (479)
++.++|+++++++|+++|+++. +|| ||.++++++|..|.+. |.++|++|+++++|++++++++|||+++|++++|
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred cHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 5789999999999999999987 999 9999999999999886 8889999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED 201 (479)
Q Consensus 123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (479)
+++.++.+++.+++++++++++|++..... .... .+. ...++++..........
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-- 136 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQ-----------------TVSAEELLENEGGSVSQ-- 136 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSC-----------------EEEHHHHHTSCSCCCCG--
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccc------hhcccccc-----------------eecHhhhhccccCCccc--
Confidence 999999999999999999999999654211 0000 011 11122222211111111
Q ss_pred ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225 202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281 (479)
Q Consensus 202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 281 (479)
.....++++++|+|||||||.||||+++|+++...+......+++..++++++.+|++|..++ ..++.++..|+++++.
T Consensus 137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCV 215 (511)
T ss_dssp GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEEC
T ss_pred cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEc
Confidence 134567899999999999999999999999999998888888899999999999999999986 5678899999999998
Q ss_pred CC---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225 282 SK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA 356 (479)
Q Consensus 282 ~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~ 356 (479)
+. +++..+++.++++++|++.++|++++.++.........++++|.++ |+++++++.+++.+.|+..++++.||+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 295 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP 295 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence 75 6899999999999999999999999999988776666788999876 899999999999999944499999999
Q ss_pred cccCcccccC--------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccc
Q psy8225 357 TEGNANLMNA--------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES 428 (479)
Q Consensus 357 tE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~ 428 (479)
||+++.++.. .....++|+|.+ +++++++|++ |+ ++++|+.|||+++ || +
T Consensus 296 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-g~----------~~~~g~~GEl~v~----g~-~ 353 (511)
T 3e7w_A 296 TEATVAVTSVEITNDVISRSESLPVGFAKP------DMNIFIMDEE-GQ----------PLPEGEKGEIVIA----GP-S 353 (511)
T ss_dssp GGGSSCSEEEEECHHHHTTCSSCCCBEECT------TCEEEEECTT-SC----------BCCTTCCEEEEEE----ST-T
T ss_pred chheeeeeEEeccccccccCCcCCCcceeC------CCEEEEECCC-CC----------CCCCCCceEEEEe----cC-c
Confidence 9998765421 233455676655 8999999965 55 6799999999998 88 9
Q ss_pred ccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 429 ~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
++.|||++++.+++.|.. .++++||+|||+|++ +||+|+|+||+||++
T Consensus 354 v~~GY~~~~~~t~~~f~~--~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~i 401 (511)
T 3e7w_A 354 VSRGYLGEPELTEKAFFS--HEGQWAYRTGDAGFI-QDGQIFCQGRLDFQI 401 (511)
T ss_dssp SCCCBTTCHHHHHHHEEE--SSSSEEEEEEEEEEE-ETTEEEEEEESSSEE
T ss_pred cChhhCCCcccchhhhcC--CCCCEEEeCCCeEEc-cCCeEEEEccccCEE
Confidence 999999999888776521 123448999999999 599999999999985
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=6.6e-58 Score=470.59 Aligned_cols=384 Identities=19% Similarity=0.181 Sum_probs=317.9
Q ss_pred cchhHHHHHHHhhcCCCccccEE-----E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225 46 PTYARPLFVRTIREVPMTGAYKY-----T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV 118 (479)
Q Consensus 46 ~~~l~~~l~~~~~~~p~~~a~~~-----~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 118 (479)
..++.++|+++++.+|+.+++.. . +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 20 ~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 99 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGL 99 (576)
T ss_dssp CSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCC
Confidence 35799999999999999988853 2 999 9999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCcc-------hHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCC
Q psy8225 119 VAAFINTNQR-------QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191 (479)
Q Consensus 119 ~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
+++|+++.++ .+++.++++.++++++|++.+....+.......+...++... +.+...
T Consensus 100 ~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 164 (576)
T 3gqw_A 100 VAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHA---------------WFKALP 164 (576)
T ss_dssp EEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHH---------------HHHTSC
T ss_pred eEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchh---------------hhhccc
Confidence 9999999998 799999999999999999998877776665554443332211 001111
Q ss_pred cCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh-cCCCCCCeEEEeccchhhhhhHHHHHH
Q psy8225 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ-TGLTSDDVVYTTLPLYHTAGGLLGIGQ 270 (479)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~d~~~~~~pl~h~~g~~~~~~~ 270 (479)
... .. .....++++++|+|||||||.||||+++|+++...+...... +++.++|++++.+|++|.+|+...++.
T Consensus 165 ~~~---~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 239 (576)
T 3gqw_A 165 EAD---VA--LQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLT 239 (576)
T ss_dssp CCC---CC--CCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHH
T ss_pred ccc---cc--cCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHH
Confidence 100 00 133457899999999999999999999999999887776544 788999999999999999998777788
Q ss_pred HHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC---CCCCCCceeEEE--ecCCChhhHHHH
Q psy8225 271 CLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK---PEDTQHSVKMMI--GNGLRPQVWEPF 341 (479)
Q Consensus 271 ~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~---~~~~l~~lr~~~--G~~l~~~~~~~~ 341 (479)
++..|+++++.+. +++..+++.++++++|++.++|++++.+.+.... ...+++++|.+. |+++++++.++|
T Consensus 240 ~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~ 319 (576)
T 3gqw_A 240 PVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQF 319 (576)
T ss_dssp HHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHH
Confidence 8999999988764 5889999999999999999999999887665432 334578899877 899999999999
Q ss_pred HHHh------CcceeeeeccccccCcccccCCCC---------------------C----------CcccccCccccCCC
Q psy8225 342 QKRF------GLDRICEFYGATEGNANLMNADGK---------------------V----------GAVGYIPYIAIPFY 384 (479)
Q Consensus 342 ~~~~------~~~~v~~~YG~tE~~~~~~~~~~~---------------------~----------~~~g~~~~~~~~~~ 384 (479)
.+.+ +. ++++.||+||++..++..+.. + .++|+| ++
T Consensus 320 ~~~~~~~~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p------~~ 392 (576)
T 3gqw_A 320 AECFRQVNFDNK-TFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKA------LP 392 (576)
T ss_dssp HHHHGGGTCCGG-GEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEE------CT
T ss_pred HHHHhhcCCCcc-cccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCc------CC
Confidence 9998 45 899999999998766533211 1 144554 44
Q ss_pred ceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEe
Q psy8225 385 PVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKD 464 (479)
Q Consensus 385 ~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d 464 (479)
+++++++| ++|+ +|++|+.|||+++ |+ +++.|||++++.+.+++. +|||+|||+|++
T Consensus 393 ~~~~~i~d-~~g~----------~~~~g~~GEl~v~----g~-~~~~gY~~~~~~~~~~~~------~g~~~TGDl~~~- 449 (576)
T 3gqw_A 393 EHGIEIRN-EAGM----------PVAERVVGHICIS----GP-SLMSGYFGDQVSQDEIAA------TGWLDTGDLGYL- 449 (576)
T ss_dssp TCEEEEEC-TTSC----------BCCTTBCEEEEEE----ST-TSCCCBTTCHHHHHHHHH------HSCEEEEEEEEE-
T ss_pred CCeEEEEC-CCCC----------CCCCCCeEEEEEe----Cc-cccccccCCccccccccC------CCeeeccceEEE-
Confidence 89999998 4455 6799999999998 88 999999999988887664 789999999999
Q ss_pred cCCcEEEecCCCCCC
Q psy8225 465 KFQYFYFKDRTGDAC 479 (479)
Q Consensus 465 ~dG~l~~~GR~~d~~ 479 (479)
+||+|+|+||+||++
T Consensus 450 ~dG~l~~~GR~dd~i 464 (576)
T 3gqw_A 450 LDGYLYVTGRIKDLI 464 (576)
T ss_dssp ETTEEEEEEETTTCE
T ss_pred ECCEEEEEecCcceE
Confidence 799999999999985
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.8e-58 Score=466.26 Aligned_cols=387 Identities=19% Similarity=0.212 Sum_probs=303.1
Q ss_pred hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225 48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123 (479)
Q Consensus 48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l 123 (479)
+|.++|.++++++|+++|+++. +|| ||.++++++|..|+++ +||+|+++++|++++++++|||+++|++++|+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 78 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMI 78 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEec
Confidence 5778999999999999999987 999 9999999999999986 89999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCC--ccc
Q psy8225 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSP--TED 201 (479)
Q Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 201 (479)
++.++.+++.+++++++++++|++............ ...+............... .....+............ ...
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (501)
T 3ipl_A 79 NTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLLDN-TMGIQYDTSNETVVPKESPSNIL 156 (501)
T ss_dssp CTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC---------------------------------CCHHHHT
T ss_pred CccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeeccccccccc-ccccccccchhhccccCCccccc
Confidence 999999999999999999999998754332211110 0111100000000000000 000000000000000000 001
Q ss_pred ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225 202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281 (479)
Q Consensus 202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 281 (479)
.....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+|+.. ++.++..|+++++.
T Consensus 157 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 157 NTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIV 235 (501)
T ss_dssp CCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEC
T ss_pred ccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeC
Confidence 13456789999999999999999999999999999888888889999999999999999999754 77899999999999
Q ss_pred CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccccc
Q psy8225 282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEG 359 (479)
Q Consensus 282 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~ 359 (479)
+.+++..+++.++++++|++.++|++++.|.+...... .+||.++ |+++++++.+++.+ ++. ++++.||+||+
T Consensus 236 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~~~-~~~~~YG~TE~ 310 (501)
T 3ipl_A 236 DKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-YNL-PIYNSFGMTET 310 (501)
T ss_dssp SSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-TTC-CEEEEEEEGGG
T ss_pred CCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-hCC-CEecccccccc
Confidence 99999999999999999999999999999988754432 2788776 89999999999987 687 89999999999
Q ss_pred CcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccccc
Q psy8225 360 NANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA 434 (479)
Q Consensus 360 ~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~ 434 (479)
++.+... ...++++|+|++ +++++++|++ .|+.|||+++ |+ +++.||+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~----------------~~~~GEl~v~----g~-~~~~gY~ 363 (501)
T 3ipl_A 311 CSQFLTATPEMLHARPDTVGMPSA------NVDVKIKNPN----------------KEGHGELMIK----GA-NVMNGYL 363 (501)
T ss_dssp TEEEEEECHHHHHHCTTCCBEECT------TCEEEEESCC----------------SSCCEEEEEE----ST-TSCSCCS
T ss_pred ccceeecCccccccCCCCCCCCCC------CcEEEEecCC----------------CCCccEEEEe----cc-chhhhhC
Confidence 8654322 235677888766 7999999865 2457999998 88 9999999
Q ss_pred CcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
++++.+.. +. +|||+|||+|++|+||+++|+||.||++
T Consensus 364 ~~~~~t~~-~~------~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 364 YPTDLTGT-FE------NGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp BSTTCCCS-EE------TTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred cChhhcch-hc------CCceecCCEEEEcCCCeEEEEccccceE
Confidence 98877654 32 7899999999999999999999999985
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2.6e-57 Score=463.96 Aligned_cols=384 Identities=15% Similarity=0.131 Sum_probs=300.2
Q ss_pred ccchhHHHHHHHhhcCCCccccEE------------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Q psy8225 45 LPTYARPLFVRTIREVPMTGAYKY------------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMW 110 (479)
Q Consensus 45 ~~~~l~~~l~~~~~~~p~~~a~~~------------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~ 110 (479)
.+.++.++|+++++++|+++|+++ . +|| ||.++++++|+.|.+.|+ +||+|+++++|++++++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~ 96 (562)
T 3ite_A 18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII 96 (562)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence 446789999999999999999985 3 999 999999999999999999 7999999999999999999
Q ss_pred HHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccC
Q psy8225 111 LGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL 190 (479)
Q Consensus 111 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
|||+++|++++|+++.++.+++.+++++++++++|++....... .......++.... ..+.+.+
T Consensus 97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~ 160 (562)
T 3ite_A 97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV----ELPPETKVLDTKN------------QSFIENL 160 (562)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC----CCCTTCEEEETTC------------HHHHHHH
T ss_pred HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc----ccCccceeecccc------------hhhhhhc
Confidence 99999999999999999999999999999999999986543211 0001111111110 0111111
Q ss_pred CcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh--------hcCCCCCCeEEEeccchhhh
Q psy8225 191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY--------QTGLTSDDVVYTTLPLYHTA 262 (479)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~--------~~~~~~~d~~~~~~pl~h~~ 262 (479)
........ .....++++++|+|||||||.||||+++|+++...+..... .+.+...+++++..|++|..
T Consensus 161 ~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (562)
T 3ite_A 161 STQDTSDI---LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV 237 (562)
T ss_dssp HHSCCSCC---CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTH
T ss_pred cccccccc---ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhh
Confidence 11111111 12345678899999999999999999999999877665433 24477889999999999987
Q ss_pred hhHHHHHHHHhcCceEEecCCCC-hhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHH
Q psy8225 263 GGLLGIGQCLLGGSTVVIRSKFS-ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWE 339 (479)
Q Consensus 263 g~~~~~~~~l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~ 339 (479)
++ ..++.++..|+++++.+.+. +..+++.++++++|++.++|++++.+.... ..+++||.++ |+++++++.+
T Consensus 238 ~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~~lr~~~~gG~~l~~~~~~ 312 (562)
T 3ite_A 238 HI-GEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAPHLVYLGVGGEKMTPRTQQ 312 (562)
T ss_dssp HH-HHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGSTTCCEEEEESSCCCHHHHH
T ss_pred hH-HHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccCceEEEEEecCCCCHHHHH
Confidence 75 55677889999999877543 577889999999999999999988875432 3578899876 8999999999
Q ss_pred HHHHHhCcceeeeeccccccCccccc----CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCc
Q psy8225 340 PFQKRFGLDRICEFYGATEGNANLMN----ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG 415 (479)
Q Consensus 340 ~~~~~~~~~~v~~~YG~tE~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~G 415 (479)
+|.+.++. .+++.||+||++..++. .....+++|+|++ +++++++|+++++ ++++|+.|
T Consensus 313 ~~~~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~~~----------~~~~g~~G 375 (562)
T 3ite_A 313 IWSSSDRV-ALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLG------DSVAHVLAPGSNE----------HVKKGMAG 375 (562)
T ss_dssp HHTTCSSC-EEEEEECCGGGCSCSEEEECCTTSCTTEEEEECT------TCEEEEECTTSSC----------BCCTTSCE
T ss_pred HHhhCCCc-EEEEeeccchheeeeeeeeecCCCCCccccccCC------CCeEEEEeCCCCC----------CCCCCCce
Confidence 99988888 99999999999865542 2344567777665 7999999987776 67999999
Q ss_pred eEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 416 ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 416 el~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
||+++ |+ +++.|||++++.+... +.++++||+|||+|++|+||+|+|+||+||++
T Consensus 376 El~v~----g~-~v~~GY~~~p~~t~~~----~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~I 430 (562)
T 3ite_A 376 ELVIE----GS-LVANGYLNRPDAKGFC----DINGRKMYRTGDIVRMDADSSILFLGRKDEQV 430 (562)
T ss_dssp EEEEE----ST-TSCCEESSCTTCCSEE----EETTEEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred EEEEe----cc-ccchhhCCCccccccc----cCCCCEEEecCCEEEEcCCCeEEEEccccCEE
Confidence 99998 88 9999999998766532 23445699999999999999999999999985
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.5e-57 Score=458.90 Aligned_cols=375 Identities=20% Similarity=0.231 Sum_probs=301.1
Q ss_pred cchhHHHHHHHhhcCCC-ccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225 46 PTYARPLFVRTIREVPM-TGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA 120 (479)
Q Consensus 46 ~~~l~~~l~~~~~~~p~-~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~ 120 (479)
..++.++|.++++++|+ ++|+++. +|| ||.++++++|..|. .|++|+++++|++++++++|||+++|+++
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~ 95 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA 95 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred cchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 35688899999999998 9999987 999 99999999998874 37899999999999999999999999999
Q ss_pred eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225 121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200 (479)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (479)
+|++|.++.+++.+++++++++++|++.+.. .......+..+...... . ....
T Consensus 96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~--------------------~-~~~~- 148 (505)
T 3nyq_A 96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPPALGALERVDVDVRA--------------------R-GAVP- 148 (505)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCGGGTTSEEEECCTTC--------------------C-CCCC-
T ss_pred EEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cchhhcccccccccccc--------------------c-cCCC-
Confidence 9999999999999999999999999986421 00111112211111000 0 0000
Q ss_pred cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280 (479)
Q Consensus 201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~ 280 (479)
.....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|..|+...++.++..|+++++
T Consensus 149 -~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 149 -EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp -CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred -CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1344678999999999999999999999999999998888888999999999999999999987788899999999999
Q ss_pred cCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC---CCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225 281 RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP---EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355 (479)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~---~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG 355 (479)
.+.+++..+++.+ ++++|++.++|+++..|.+..... ...++++|.++ |+++++++.+++.+.++. ++++.||
T Consensus 228 ~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~-~~~~~YG 305 (505)
T 3nyq_A 228 LGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR-RVIERYG 305 (505)
T ss_dssp CSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSC-CCEEEEE
T ss_pred CCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCC-eeecccc
Confidence 9999999999999 889999999999999988743221 12367788876 888999999999999998 9999999
Q ss_pred ccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccc
Q psy8225 356 ATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432 (479)
Q Consensus 356 ~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~g 432 (479)
+||++..+... ....+++|+|++ +++++++|++ ++.+ .+++.|+.|||+++ |+ +++.|
T Consensus 306 ~TE~~~~~~~~~~~~~~~~~vG~p~~------~~~~~i~d~~-g~~~-------~~~~~g~~GEl~v~----g~-~v~~G 366 (505)
T 3nyq_A 306 MTETLMNTSVRADGEPRAGTVGVPLP------GVELRLVEED-GTPI-------AALDGESVGEIQVR----GP-NLFTE 366 (505)
T ss_dssp ETTTEEEEECCTTSCCCTTCCCEECT------TCEEEEC------CC-------CCCCSCCCEEEEEE----ST-TSCCE
T ss_pred hhhcccccccCCCCCCCCCCcccCCC------CCEEEEECCC-CCCc-------ccCCCCceEEEEEe----cC-chhhh
Confidence 99998665432 234566777665 8999999865 4422 01234899999998 88 99999
Q ss_pred ccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCC-CCCC
Q psy8225 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT-GDAC 479 (479)
Q Consensus 433 Y~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~-~d~~ 479 (479)
||++++.+.+.|. .+|||+|||+|++|+||+|+|+||+ ||++
T Consensus 367 Y~~~~~~t~~~f~-----~~g~y~TGDl~~~~~dG~l~~~GR~~d~~i 409 (505)
T 3nyq_A 367 YLNRPDATAAAFT-----EDGFFRTGDMAVRDPDGYVRIVGRKATDLI 409 (505)
T ss_dssp ETTCHHHHHHTBC-----TTSCEEEEEEEEECTTSCEEEEEESSCCCE
T ss_pred hCCChhHhhhhhc-----CCCCCccCCeEEECCCccEEEeCCccCceE
Confidence 9999988887664 3799999999999999999999998 5764
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.7e-55 Score=488.91 Aligned_cols=383 Identities=17% Similarity=0.233 Sum_probs=313.1
Q ss_pred chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225 47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122 (479)
Q Consensus 47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~ 122 (479)
.++.++|.++++++|+++|+++. +|| ||.++++++|+.|+++|+++|++|+|+++|++++++++|||+++|++++|
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vp 543 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLP 543 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEE
Confidence 57999999999999999999987 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED 201 (479)
Q Consensus 123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (479)
++|.++.+++.+++++++++++|++.+....+. ..+ ....+..++.. .+. ..... .
T Consensus 544 ldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~-----------~~~----~~~~~-~--- 600 (1304)
T 2vsq_A 544 VDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT-----------RFE----EQASD-P--- 600 (1304)
T ss_dssp CCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----------GGG----SCSSC-C---
T ss_pred ECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----------ccc----cccCC-C---
Confidence 999999999999999999999999876432211 111 11122221100 000 00000 0
Q ss_pred ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225 202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281 (479)
Q Consensus 202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 281 (479)
.....++++++|+|||||||+||||+++|+++.+. ......+++..+|++++..|++|..+. +.++.++..|+++++.
T Consensus 601 ~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 601 ATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIA 678 (1304)
T ss_dssp CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEEC
Confidence 13346789999999999999999999999999866 444556778899999999999998774 6788899999999998
Q ss_pred CC---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225 282 SK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA 356 (479)
Q Consensus 282 ~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~ 356 (479)
+. .++..+++.|.++++|++.++|++++.|.+... ..+++||.++ |+++++++.++|.+.++..++++.||+
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 755 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGP 755 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeECh
Confidence 74 689999999999999999999999999876421 2367888876 889999999999999875589999999
Q ss_pred cccCcccccCC-------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccc
Q psy8225 357 TEGNANLMNAD-------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429 (479)
Q Consensus 357 tE~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~ 429 (479)
||++..++... ....++|+| +++++++|+|++ ++ +|+.|+.|||+++ |+ ++
T Consensus 756 TE~~~~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~i~d~~-~~----------~~p~G~~GEl~i~----G~-~v 813 (1304)
T 2vsq_A 756 TEGTVFATAHVVHDLPDSISSLPIGKP------ISNASVYILNEQ-SQ----------LQPFGAVGELCIS----GM-GV 813 (1304)
T ss_dssp GGGSSCSEEEECCCCCSSCSSCCCBEE------CTTEEEEEECTT-SC----------BCCTTCCEEEEEE----ET-TC
T ss_pred hHHhHHheeeeccCccccCCCCCCcee------eCCCEEEEECCC-cC----------CCCCCCceEEEEe----cc-cc
Confidence 99987654321 122344554 448999999965 44 6799999999998 77 99
Q ss_pred cccccCcchhHHHHH-hhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 430 FNGYADKKASEKKIL-RNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 430 ~~gY~~~~~~~~~~~-~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
+.||+|+++.|++.| .++|.++++||+|||+|++++||+|+|+||+||+|
T Consensus 814 ~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qv 864 (1304)
T 2vsq_A 814 SKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQV 864 (1304)
T ss_dssp CCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred CccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEE
Confidence 999999988777655 45566678899999999999999999999999985
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.8e-35 Score=290.47 Aligned_cols=234 Identities=18% Similarity=0.111 Sum_probs=189.0
Q ss_pred CCC-CCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh---hhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225 205 NKP-SDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280 (479)
Q Consensus 205 ~~~-~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~ 280 (479)
... +++++++|||||||.||+|+++|+++...+.... ..+++.++|++++.+|++|..+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 344 7889999999999999999999999977665543 345789999999999998877776777888999999999
Q ss_pred cCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225 281 RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA 356 (479)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~ 356 (479)
.+.+++..+++.|+++++|++.++|+++..|++....... .++++|.++ |+++++++.+++++.||. ++++.||+
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG~ 240 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV-KAYNSFGM 240 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCc-cEEecCcc
Confidence 9888999999999999999999999999998876433332 367899876 899999999999999998 99999999
Q ss_pred cccCcc-c-ccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccccc
Q psy8225 357 TEGNAN-L-MNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA 434 (479)
Q Consensus 357 tE~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~ 434 (479)
||+++. + ...+... ..+.+ .+++.++++|+++++ ++++|+.|||+++ |. .
T Consensus 241 TE~~~~~~~~~~~~~~-g~~~~------~~~~~v~i~d~~~g~----------~~~~g~~Gel~v~----~~-~------ 292 (436)
T 3qov_A 241 TEMNGPGVAFECQEQN-GMHFW------EDCYLVEIIDPETGE----------PVPEGEIGELVLT----TL-D------ 292 (436)
T ss_dssp GGGTEEEEEEECTTCS-SEEEC------TTTEEEEEECTTTCS----------BCSTTCCEEEEEE----ES-S------
T ss_pred hhhcCCeeEEecCCCC-eeEEc------cCceEEEEEECCCCC----------CCCCCCceEEEEe----cc-C------
Confidence 999543 3 2232221 13332 236889999988777 6789999999998 32 1
Q ss_pred CcchhHHHHHhhhccCCCcEEEcCCeeEEecCC------c---EEEecCCCCCC
Q psy8225 435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQ------Y---FYFKDRTGDAC 479 (479)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG------~---l~~~GR~~d~~ 479 (479)
+ . . + .++||+|||+|++|++| + ++|.||.||++
T Consensus 293 ~-~-----~----~--~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~i 334 (436)
T 3qov_A 293 R-E-----M----M--PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMF 334 (436)
T ss_dssp C-C-----S----S--CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCE
T ss_pred c-C-----C----c--eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEE
Confidence 0 0 0 1 26899999999999998 6 79999999985
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.5e-35 Score=281.89 Aligned_cols=213 Identities=13% Similarity=0.103 Sum_probs=170.6
Q ss_pred CCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCCh
Q psy8225 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSA 286 (479)
Q Consensus 207 ~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 286 (479)
.+++++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+|+. .++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCcc--
Confidence 47899999999999999999999999999999888899999999999999999999974 466788888888876532
Q ss_pred hHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccc
Q psy8225 287 SNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364 (479)
Q Consensus 287 ~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~ 364 (479)
...++.++++++|++.++|++++.|++..... ..+++||.++ |+++++++.+++++ ++. ++++.||+||+++.+.
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~-~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~-~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSATS-GQVDRLGKVLLGGAPVNHALAMQISD-LAM-PVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTG-GGGGGGCSEEECSSCCCHHHHHHHHT-CSS-CEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhcccccc-ccCCcceEEEEcccCCCchheecccc-cCc-eEEeccccccccceee
Confidence 23456788999999999999999998876543 3688999877 88999999999976 587 8999999999987654
Q ss_pred cC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHH
Q psy8225 365 NA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEK 441 (479)
Q Consensus 365 ~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~ 441 (479)
.. ....+.+|.+.| ++.+ ..++.|||+++ |+ ..
T Consensus 190 ~~~~~~~~~g~~~~~~p------gv~~---------------------~~~~~Gel~~~----g~-~~------------ 225 (358)
T 4gs5_A 190 LKALNGPEASELYVFLP------GIQY---------------------GVDERGCLHIS----GA-VT------------ 225 (358)
T ss_dssp EEECSSTTCCSCEEECT------TCEE---------------------EECTTSEEEEE----SG-GG------------
T ss_pred cccccccccceeeccCC------CeEE---------------------EecCcCceEEe----cc-cc------------
Confidence 32 223344444333 3433 33457999887 44 11
Q ss_pred HHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225 442 KILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC 479 (479)
Q Consensus 442 ~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~ 479 (479)
.+|||+|||+|++|+|| ++++||+||++
T Consensus 226 ---------~~g~~~TGDlg~~d~~g-~~~~GR~dd~I 253 (358)
T 4gs5_A 226 ---------NGQTVQTNDLVEIHGNA-FQWIGRADNVI 253 (358)
T ss_dssp ---------TTCCEEEEEEEEECSSE-EEEEEEGGGEE
T ss_pred ---------cCcceecCCccccccCc-eEEcccccCeE
Confidence 27899999999999998 66779999975
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.4e-33 Score=279.33 Aligned_cols=235 Identities=16% Similarity=0.024 Sum_probs=184.6
Q ss_pred CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh---hhcCCCCCCeEEEeccc-hhhhhhHHHHHHHHhcCceEE
Q psy8225 204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVVYTTLPL-YHTAGGLLGIGQCLLGGSTVV 279 (479)
Q Consensus 204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl-~h~~g~~~~~~~~l~~G~~~v 279 (479)
...++++++++|||||||.||+|+++|+++...+.... ..+++..+|++++.+|+ +|..++ ..++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 34567889999999999999999999999876654333 35678899999999998 566664 45677889999999
Q ss_pred ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225 280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355 (479)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG 355 (479)
+.+.+++..+++.|+++++|++.++|+++..|++....... .++++|.++ |+++++++.+++++.+|. ++++.||
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 243 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI-DAVDIYG 243 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCc-CEEecCC
Confidence 88888999999999999999999999999998875432222 247888776 899999999999999998 9999999
Q ss_pred ccccC-c-ccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccc
Q psy8225 356 ATEGN-A-NLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY 433 (479)
Q Consensus 356 ~tE~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY 433 (479)
+||++ . +....+... .|.+. +.+++.++++|+++++ ++++|+.|||++++ . .
T Consensus 244 ~TE~~g~~~~~~~~~~~--~g~~~----~~~~~~~~i~d~~~g~----------~~~~g~~Gel~v~~----~-t----- 297 (437)
T 2y27_A 244 LSEVMGPGVASECVETK--DGPTI----WEDHFYPEIIDPETGE----------VLPDGELGELVFTS----L-T----- 297 (437)
T ss_dssp ETTTTEEEEEECCTTTC--SSCEE----CTTTEEEEEECTTTCC----------BCCTTCCEEEEEEE----S-S-----
T ss_pred chhhcCCeeEEecCCCC--CceeE----ccCceEEEEEcCCCCC----------CCCCCCccEEEEec----C-C-----
Confidence 99984 3 333333221 23221 2236889999988777 67899999999982 1 0
Q ss_pred cCcchhHHHHHhhhccCCCcEEEcCCeeEEec-CCcE-----EEecCCCCCC
Q psy8225 434 ADKKASEKKILRNVYSHGDAAFNTGDILIKDK-FQYF-----YFKDRTGDAC 479 (479)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~-dG~l-----~~~GR~~d~~ 479 (479)
+. . | .++||+|||+|++|+ ||++ +|.||.||++
T Consensus 298 -~~------~----~--~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i 336 (437)
T 2y27_A 298 -KE------A----L--PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMM 336 (437)
T ss_dssp -CS------S----S--CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCE
T ss_pred -cC------C----c--hhheeecCCEEEEeCCCCCCccccCccccccCCeE
Confidence 00 0 1 168999999999999 6996 9999999984
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.2e-33 Score=280.20 Aligned_cols=235 Identities=15% Similarity=0.009 Sum_probs=184.8
Q ss_pred CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh---hhcCCCCCCeEEEeccch-hhhhhHHHHHHHHhcCceEE
Q psy8225 204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVVYTTLPLY-HTAGGLLGIGQCLLGGSTVV 279 (479)
Q Consensus 204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl~-h~~g~~~~~~~~l~~G~~~v 279 (479)
...++++++++|||||||.||+|+++|+++...+.... ..+++.++|++++.+|++ |..++ ..++.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence 34567889999999999999999999999876554433 356788999999999984 55554 55677888999999
Q ss_pred ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225 280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355 (479)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG 355 (479)
+.+.+++..+++.|+++++|++.++|+++..|++....... .++++|.++ |+++++++.+++++.+|. ++++.||
T Consensus 167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 245 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGI-DALDIYG 245 (443)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTC-EEEEEEE
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCc-CEEeccC
Confidence 98888999999999999999999999999998875432222 247888776 899999999999999998 8999999
Q ss_pred ccccCc--ccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccc
Q psy8225 356 ATEGNA--NLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY 433 (479)
Q Consensus 356 ~tE~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY 433 (479)
+||+++ +....+... .|.++ +.+++.++++|+++++ ++++|+.|||++++ . .
T Consensus 246 ~TE~~g~~~~~~~~~~~--~g~~~----~~~~~~~~i~d~~~g~----------~~~~G~~Gel~v~~----~-t----- 299 (443)
T 2y4o_A 246 LSEVMGPGVACECVETK--DGPVI----WEDHFYPEIIDPVTGE----------VLPDGSQGELVFTS----L-T----- 299 (443)
T ss_dssp ETTTTEEEEEEECTTTC--CSEEE----CTTTEEEEEECTTTCC----------BCCTTCCEEEEEEE----S-S-----
T ss_pred chhhcCCeEEeccCCCC--CceEE----ccCCeEEEEEcCCCCC----------CCCCCCceEEEEeC----C-C-----
Confidence 999743 333333221 23322 2236889999987777 67899999999982 1 0
Q ss_pred cCcchhHHHHHhhhccCCCcEEEcCCeeEEecC-CcE-----EEecCCCCCC
Q psy8225 434 ADKKASEKKILRNVYSHGDAAFNTGDILIKDKF-QYF-----YFKDRTGDAC 479 (479)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d-G~l-----~~~GR~~d~~ 479 (479)
+. .| .++||+|||+|++|++ |++ +|.||.||++
T Consensus 300 -~~----------~~--p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i 338 (443)
T 2y4o_A 300 -KE----------AM--PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDML 338 (443)
T ss_dssp -CS----------SS--CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCE
T ss_pred -cc----------cC--hhheeecCCEEEEcCCCCCCccccCccccccCCeE
Confidence 10 01 1689999999999999 997 8999999985
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=2.5e-30 Score=250.13 Aligned_cols=202 Identities=14% Similarity=0.047 Sum_probs=160.9
Q ss_pred CCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhh---hhhcCCCCCCeEEEeccc-hhhhhhHHHHHHHHhcCceEEe
Q psy8225 205 NKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG---RYQTGLTSDDVVYTTLPL-YHTAGGLLGIGQCLLGGSTVVI 280 (479)
Q Consensus 205 ~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~d~~~~~~pl-~h~~g~~~~~~~~l~~G~~~v~ 280 (479)
..++++++|+|||||||.||+|+++|+++...+... ....++..+|++++.+|+ +|..|+... +.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~-~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINK-ERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHH-HHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHH-HHHHHcCC-EEE
Confidence 367888999999999999999999999998877743 345678899999999999 999887554 44578888 666
Q ss_pred cCCCChh-----------------------HHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCCh
Q psy8225 281 RSKFSAS-----------------------NFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRP 335 (479)
Q Consensus 281 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~ 335 (479)
...+++. .+++.++++++|++.++|+++..|++........+++||.++ |+++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 6777877 888899999999999999999999887433223467889876 889999
Q ss_pred hhHHHHH-HHh-CcceeeeeccccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCC
Q psy8225 336 QVWEPFQ-KRF-GLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEE 413 (479)
Q Consensus 336 ~~~~~~~-~~~-~~~~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~ 413 (479)
++++++. +.| +. ++++.||+||+++++...+. .++|+++...+..++++++|+|+++++ +|++|+
T Consensus 246 ~~~~~~~~~~~p~~-~v~~~YG~TE~~~~~~~~~~--~~~G~~~~~~~~~~~~~v~ivD~~~g~----------~vp~G~ 312 (369)
T 3hgu_A 246 DEIKFIASEILPDC-EFSASYGSTSALGVSRSLLI--TSESQQVIYDSFSPFITYDVVDSITAQ----------TVEYGE 312 (369)
T ss_dssp HHHHHHHHHTCTTS-EEEEEEEEGGGTEEEEECCB--CTTCSSCEEECCTTTEEEEEECTTTCS----------BCCTTC
T ss_pred HHHHHHHHHhCCCc-EEEcccCchhhhcceecccc--ccCCCcccccCCCCCeEEEEECCCCCc----------CCCCCC
Confidence 9999999 899 66 99999999999876654332 147887433333558999999987777 679999
Q ss_pred CceEEEEe
Q psy8225 414 PGILIGMI 421 (479)
Q Consensus 414 ~Gel~v~~ 421 (479)
.|||+++.
T Consensus 313 ~GEl~vt~ 320 (369)
T 3hgu_A 313 RGNVIVTH 320 (369)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 99999983
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.00 E-value=1.3e-05 Score=79.68 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=69.2
Q ss_pred CCceeEE---EecCCChhhHHHHHHHhCcceee-eeccccccCcccccCC-CCCCcccccCccccCCCceeeEEeCCCCC
Q psy8225 322 QHSVKMM---IGNGLRPQVWEPFQKRFGLDRIC-EFYGATEGNANLMNAD-GKVGAVGYIPYIAIPFYPVGLIKCDPETS 396 (479)
Q Consensus 322 l~~lr~~---~G~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~i~d~~~~ 396 (479)
.++++.+ .++.+ ..-+.++++.+|..+++ ..|++||+...+-..+ ..++..+..+- +...-.+..-+++...
T Consensus 296 WPnl~~l~~~~~G~~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~--~~~~ffEFip~~~~~~ 372 (581)
T 4eql_A 296 WPNTKYIETVVTGSM-GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFM--PNMSYFEFIPMDGGDK 372 (581)
T ss_dssp STTCCEEEEECSGGG-GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEEC--TTSSEEEEEECSTTCC
T ss_pred CCCCcEEEEEcCCCh-HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcccCceeec--CCcEEEEEEeccccCC
Confidence 5675554 33333 44556676666544666 8999999643322222 22233443221 1111134433332211
Q ss_pred CccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEec----CCcEEEe
Q psy8225 397 EPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDK----FQYFYFK 472 (479)
Q Consensus 397 ~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~----dG~l~~~ 472 (479)
..+ -...+|+.|+.+||++... .|.| -|++||+.+++. ..++.|+
T Consensus 373 ~~~----v~l~eVe~G~~YelViTt~--------~GL~-------------------RYr~GD~v~v~~f~~~~p~i~f~ 421 (581)
T 4eql_A 373 NDV----VDLEDVKLGCTYEPVVTNF--------AGLY-------------------RMRVGDIVLVTGFYNNAPQFKFV 421 (581)
T ss_dssp SSC----EEGGGCCTTCEEEEEEECS--------SSCC-------------------SEECCEEEEEEEEETTEEEEEEE
T ss_pred CcE----eCHHHcCCCceEEEEEeec--------ccee-------------------eEEcCCEEEEcccCCCCcEEEEE
Confidence 101 1234678999999999722 2221 189999999986 3589999
Q ss_pred cCCCCC
Q psy8225 473 DRTGDA 478 (479)
Q Consensus 473 GR~~d~ 478 (479)
||.||+
T Consensus 422 gR~~~~ 427 (581)
T 4eql_A 422 RRENVV 427 (581)
T ss_dssp EETTEE
T ss_pred EecCCE
Confidence 999986
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.76 E-value=8.2e-05 Score=74.20 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCceeEE---EecCCChhhHHHHHHHhCcceee-eeccccccCcccccCC-CCCCcccccCccccCCCceeeEEeCCC--
Q psy8225 322 QHSVKMM---IGNGLRPQVWEPFQKRFGLDRIC-EFYGATEGNANLMNAD-GKVGAVGYIPYIAIPFYPVGLIKCDPE-- 394 (479)
Q Consensus 322 l~~lr~~---~G~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~i~d~~-- 394 (479)
.++++.+ .++.+ ..-+.+++..+|..+++ ..|++||+...+-..+ ..++..+..+.+ ...-.++.-+++.
T Consensus 301 WPnlk~l~~~~tG~~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p--~~~ffEFIP~~~~~~ 377 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM-AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMP--NMAYFEFLPHEHSSI 377 (609)
T ss_dssp STTCCEEEEECSGGG-GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECT--TSCEEEEEEGGGTTS
T ss_pred CCCCcEEEEEccCCh-HHHHHHHHHHcCCCccccCcccccceeeeeecCCCCCcccCceeecC--CcEEEEEEecccccc
Confidence 5676643 33334 44446676666544566 8999999753332222 223344432211 1111333323321
Q ss_pred ------CCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEec---
Q psy8225 395 ------TSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDK--- 465 (479)
Q Consensus 395 ------~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~--- 465 (479)
+.+.+ ...+|+.|+.+||++.. ..|+|+ |++||+.+++.
T Consensus 378 ~~~~~~~~~~v-----~l~eVe~G~~YelViTt--------~~GL~R-------------------Yr~GD~v~v~~f~~ 425 (609)
T 4b2g_A 378 PLSRDSPPRLV-----DLAHVEVGKEYELVITT--------YAGLYR-------------------YRVGDILRVTGFHN 425 (609)
T ss_dssp CCCSSSCCCCE-----EGGGCCTTCEEEEEEEC--------TTSCCS-------------------EEEEEEEEEEEEET
T ss_pred ccccCCCCccc-----cHhHcCCCCeEEEehhh--------hhhhhh-------------------eecCCEEEEeecCC
Confidence 01111 12367899999999872 234322 89999999974
Q ss_pred -CCcEEEecCCCCCC
Q psy8225 466 -FQYFYFKDRTGDAC 479 (479)
Q Consensus 466 -dG~l~~~GR~~d~~ 479 (479)
..++.|+||.+|+.
T Consensus 426 ~~p~i~~~gR~~~~l 440 (609)
T 4b2g_A 426 SAPQFHFVRRKNVLL 440 (609)
T ss_dssp TEEEEEEEEETTCCB
T ss_pred CCcEEEEEEecCCeE
Confidence 46899999999873
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.66 E-value=8.8e-05 Score=73.62 Aligned_cols=125 Identities=12% Similarity=0.030 Sum_probs=67.4
Q ss_pred CCceeEE---EecCCChhhHHHHHHHhCcceee-eeccccccCcccccCC-CCCCcccccCccccCCCceeeEEeCCCCC
Q psy8225 322 QHSVKMM---IGNGLRPQVWEPFQKRFGLDRIC-EFYGATEGNANLMNAD-GKVGAVGYIPYIAIPFYPVGLIKCDPETS 396 (479)
Q Consensus 322 l~~lr~~---~G~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~i~d~~~~ 396 (479)
.++++.+ .++.+ ..-+.++++.+|..+++ ..|++||+...+-..+ ..++..+..+.+ ...-.+..-+++...
T Consensus 301 WPnl~~i~~~~~G~~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p--~~~ffEFiP~~~~~~ 377 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM-EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIP--NLGYFEFLPVSETGE 377 (581)
T ss_dssp CTTCCCEEEECSGGG-GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECT--TSCEEEEEEC-----
T ss_pred CCCCceEEEEeCCCh-HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCccccceeecC--CcEEEEEEecccccC
Confidence 4667543 34444 33446666666544666 8999999743332222 223334443211 111133433332211
Q ss_pred CccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecC----CcEEEe
Q psy8225 397 EPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF----QYFYFK 472 (479)
Q Consensus 397 ~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d----G~l~~~ 472 (479)
+ ..+.=...+|+.|+.+||++... .|.| -|++||+.+++.- .++.|+
T Consensus 378 ~--~~~~v~l~eve~G~~YelviTt~--------~GL~-------------------RYr~GD~v~v~g~~~~~p~~~~~ 428 (581)
T 4epl_A 378 G--EEKPVGLTQVKIGEEYEVVITNY--------AGLY-------------------RYRLGDVVKVIGFYNNTPQLKFI 428 (581)
T ss_dssp ----CCCEEGGGCCTTCEEEEEEEST--------TSCS-------------------SEEEEEEEEEEEEETTEEEEEEE
T ss_pred C--CCceeeHHHcCCCCeEEEEEeec--------ccee-------------------eEEcCCEEEEecccCCCcEEEEE
Confidence 0 00001124678999999999722 2221 1999999999752 579999
Q ss_pred cCCCCC
Q psy8225 473 DRTGDA 478 (479)
Q Consensus 473 GR~~d~ 478 (479)
||.||+
T Consensus 429 gR~~~~ 434 (581)
T 4epl_A 429 CRRNLI 434 (581)
T ss_dssp EETTCC
T ss_pred eecCCe
Confidence 999986
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.43 E-value=0.62 Score=44.94 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=75.6
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhhcCceeeeec
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQ--PEYVCMWLGLSKIGVVAAFIN 124 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~l~ 124 (479)
.++.++++.. +|. .+...+..++..+...|+.++|++....+-. ...+...++++..|+.+++..
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 4566776665 789 9888888888888888999999999988853 333455788889999988765
Q ss_pred CCcchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 125 TNQRQHILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
. ...+.+...+++.++.+++........+.+
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 5 478889999999999999998876655544
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.06 E-value=0.72 Score=44.55 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=75.4
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhhcCceeeeec
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQ--PEYVCMWLGLSKIGVVAAFIN 124 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~l~ 124 (479)
.++.++++.. +|. .+...+..++..+...|+.++|++....+-+ ...+...++++..|+.+++..
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 4566676655 788 9888888888888888999999999988853 334556788889999988776
Q ss_pred CCcchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 125 TNQRQHILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
+. ..+.+...+++.++.+++........+.+
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 54 78889999999999999998876655543
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.78 E-value=0.54 Score=45.33 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=75.8
Q ss_pred CccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhhcCceeeeecCC
Q psy8225 62 MTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQ--PEYVCMWLGLSKIGVVAAFINTN 126 (479)
Q Consensus 62 ~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~l~~~ 126 (479)
+.+|++.. +|. .+...+..++..+...|+.++|++....+-+ ...+..+++++..|+.+++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 56676665 899 9988888888888888999999999988743 3445567888999998887654
Q ss_pred cchHHHHHHHHhccceEEEeChhhHHHHHHh
Q psy8225 127 QRQHILIHSIKVAECKAIIYGAELSEALTEV 157 (479)
Q Consensus 127 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 157 (479)
..++.+...+++.++.+++........+.+.
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 195 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSYAIRLAEV 195 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence 4678899999999999999988766655443
No 43
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=86.73 E-value=9 Score=37.36 Aligned_cols=108 Identities=13% Similarity=-0.005 Sum_probs=76.9
Q ss_pred cCCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH-HHHHHHhhhcCceeeeec
Q psy8225 59 EVPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFIN 124 (479)
Q Consensus 59 ~~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l~ 124 (479)
..++.+|++.. +|+ .+...+..... ..++.++|++...+|-...+ +..+++++..|+.++..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 35678888876 788 88776665544 34889999999888865433 334677888898887665
Q ss_pred CCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cceEEecC
Q psy8225 125 TNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAG 170 (479)
Q Consensus 125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (479)
...++.+...+++.++.+++........+.+...... .++.+..+
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~g 282 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLG 282 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEEC
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEe
Confidence 5788999999999999999998887766654332221 44544433
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=85.44 E-value=3.2 Score=38.70 Aligned_cols=93 Identities=6% Similarity=-0.038 Sum_probs=65.6
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--HHHHHHHHhhhcCceeeeec
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQP--EYVCMWLGLSKIGVVAAFIN 124 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~v~l~ 124 (479)
.++.++.+.. +|. .+...+..++..+...|+.++|++...+|-+. --....+++...|+.+++.
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~- 167 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI- 167 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC-
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc-
Confidence 4566677665 788 88888877777777789999999999988622 2234445558888855543
Q ss_pred CCcchH-----------------------HHHHHHHhccceEEEeChhhHHHH
Q psy8225 125 TNQRQH-----------------------ILIHSIKVAECKAIIYGAELSEAL 154 (479)
Q Consensus 125 ~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~ 154 (479)
.+.+. ++.+.+++.++.+++........+
T Consensus 168 -~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 168 -DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp -CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred -cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 33333 666788999999999887655443
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=84.63 E-value=12 Score=37.02 Aligned_cols=107 Identities=11% Similarity=0.033 Sum_probs=76.1
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH---HHHHhhhcCceeeee
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVC---MWLGLSKIGVVAAFI 123 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~v~l 123 (479)
.|+.+|++.. +|+ .+...+...... .++.++|++...+|-...+-. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4677787776 888 887776655443 478899999988886544432 478888899888765
Q ss_pred cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhh----ccCCcceEEecC
Q psy8225 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVK----DSIPGISLYAAG 170 (479)
Q Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~ 170 (479)
+...++.+...+++.++.+++........+.+.. ...+.++.+..+
T Consensus 257 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~g 306 (539)
T 1mdb_A 257 -PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVG 306 (539)
T ss_dssp -SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEE
T ss_pred -CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEc
Confidence 4577889999999999999999887666554332 123456655444
No 46
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=83.97 E-value=11 Score=36.87 Aligned_cols=107 Identities=10% Similarity=-0.012 Sum_probs=75.0
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH--HHHHhhhcCceeeeec
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVC--MWLGLSKIGVVAAFIN 124 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~--~~lA~~~~G~~~v~l~ 124 (479)
.|+.+|++.. +|+ .+...+..++..+ ++.++|++...+|-...+-. .+++++ .|+..+..
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~- 242 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM- 242 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence 3567777766 888 8877776665544 88999999998887654433 245555 78877765
Q ss_pred CCcchHHHHHHHHhccceEEEeChhhHHHHHHhh----ccCCcceEEecCC
Q psy8225 125 TNQRQHILIHSIKVAECKAIIYGAELSEALTEVK----DSIPGISLYAAGT 171 (479)
Q Consensus 125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~ 171 (479)
+...+..+...+++.++.++.........+.+.. ...+.++.+..+.
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG 293 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG 293 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECS
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECC
Confidence 5678889999999999999999887766554322 1234566555443
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=81.65 E-value=6.4 Score=39.03 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=69.1
Q ss_pred CccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH--HHHHHHhhhcCceeeeecCC
Q psy8225 62 MTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY--VCMWLGLSKIGVVAAFINTN 126 (479)
Q Consensus 62 ~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~v~l~~~ 126 (479)
+.+|++.. +|+ .+...+......+...++.++|++...+|-...+ ...+++.+ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 67777775 888 8877766555443335788999998888865443 33356777 888887664 5
Q ss_pred cchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 127 QRQHILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 127 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
..++.+...+++.++.+++........+.+
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 788899999999999999998877766544
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=80.70 E-value=12 Score=37.06 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=70.1
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH---HHHHhhhcCceeeee
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVC---MWLGLSKIGVVAAFI 123 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~v~l 123 (479)
.++.+|++.. +|+ .+...+...+.. .++.++|++...+|-...+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4677888776 888 887777665544 488999999999886544433 367888889887765
Q ss_pred cCCcchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
. ...+..+...+++.++.++.........+.+
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 4 5678888999999999999998876655543
No 49
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=80.67 E-value=14 Score=36.04 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=70.3
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCC--CCCCEEEEEcCCchHHH--HHHHHhhhcCceeee
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGL--QRGDAVALFMEGQPEYV--CMWLGLSKIGVVAAF 122 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi--~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~v~ 122 (479)
.|+.+|++.. +|+ .+...+..++. ..++ .++|++...+|-...+- ..+++.+..|+..+.
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 4677787776 889 88776665543 3367 77888888888655443 356788889988886
Q ss_pred ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHh
Q psy8225 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEV 157 (479)
Q Consensus 123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 157 (479)
.+ ...+..+...+++.++.+++........+.+.
T Consensus 228 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 261 (504)
T 1t5h_X 228 VE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAA 261 (504)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhh
Confidence 65 46788899999999999999988877666543
No 50
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=77.69 E-value=26 Score=35.12 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=75.4
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH--HH-HHHHhhhcCceeeee
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY--VC-MWLGLSKIGVVAAFI 123 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~~~v~l 123 (479)
.++.+|++.. +|+ .+...+...... .++.++|++...+|-...+ .. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 4577787776 888 887776665544 3789999999998854433 32 467888888887765
Q ss_pred cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhc------cCCcceEEecCC
Q psy8225 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKD------SIPGISLYAAGT 171 (479)
Q Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~~~ 171 (479)
. ......+...+++.++.++.........+.+... ..+.++.+..+.
T Consensus 259 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gG 311 (617)
T 3rg2_A 259 A-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGG 311 (617)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEES
T ss_pred C-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcC
Confidence 4 4577788889999999999998876665544321 234566555443
No 51
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=76.20 E-value=6.7 Score=36.41 Aligned_cols=91 Identities=9% Similarity=0.025 Sum_probs=62.8
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH-HHHHHHhhhcCceeeeecC
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFINT 125 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l~~ 125 (479)
+.|.+|++.. +|+ .+...+..++.. .+++++|++...+|-...+ +..++..+..|+..+...+
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 4567888776 899 988777665544 4889999999988865433 3445556677777776665
Q ss_pred CcchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 126 NQRQHILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 126 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
... ....+++.++.++.........+.+
T Consensus 112 ~~~---~~~~i~~~~~t~~~~~P~~l~~ll~ 139 (358)
T 4gs5_A 112 TAN---PLAGLDHADFDFVAMVPMQLQSILE 139 (358)
T ss_dssp CSC---TTTTCSSCCCSEEEECHHHHHHHHH
T ss_pred ccc---HHHHHHHhCCeEEEcChHHHHHhhc
Confidence 433 2346788899999988776655543
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=74.88 E-value=12 Score=36.61 Aligned_cols=93 Identities=13% Similarity=0.032 Sum_probs=69.6
Q ss_pred cCCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH-HHHHHHhhhcCceeeeec
Q psy8225 59 EVPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFIN 124 (479)
Q Consensus 59 ~~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l~ 124 (479)
..++.+|++.. +|+ .+...+..... ..++.++|++...+|-...+ +..+++++..|+..+.++
T Consensus 141 ~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217 (512)
T ss_dssp CCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECC
Confidence 34677777775 788 88776655443 34889999999998865433 345788888999888776
Q ss_pred CC--cchHHHHHHHHhccceEEEeChhhHHHH
Q psy8225 125 TN--QRQHILIHSIKVAECKAIIYGAELSEAL 154 (479)
Q Consensus 125 ~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 154 (479)
+. ..++.+...+++.++.+++........+
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 53 5678899999999999999988766554
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=74.78 E-value=11 Score=37.57 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=70.7
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH--HHHHhhhcCceeeeec
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVC--MWLGLSKIGVVAAFIN 124 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~--~~lA~~~~G~~~v~l~ 124 (479)
.++.+|++.. +|+ .+...+...... .++.++|++...+|-...+-. .+++.+..|+..+...
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 4677888876 889 888777665543 488999999999987765533 3788889999888776
Q ss_pred CCc---chHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 125 TNQ---RQHILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 125 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
+.. .+..+...+++.++.++.........+.+
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 532 57788899999999999887765555443
No 54
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=73.97 E-value=13 Score=36.26 Aligned_cols=94 Identities=7% Similarity=0.026 Sum_probs=69.9
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH-HHHHHHhhhcCceeeeecC
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFINT 125 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l~~ 125 (479)
.++.+|++.. +|+ .+...+..++. ..++.++|++...+|-...+ +..+++++..|+.++....
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 4567777765 788 88776655544 34788999999988865443 3457888889998877654
Q ss_pred C--cchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 126 N--QRQHILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 126 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
. ..+..+...+++.++.+++........+..
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 250 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLM 250 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 3 567888999999999999998876655443
No 55
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=73.88 E-value=11 Score=37.36 Aligned_cols=109 Identities=9% Similarity=0.068 Sum_probs=75.1
Q ss_pred CCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH-HHHHHHhhhcCceeeeecCC
Q psy8225 61 PMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFINTN 126 (479)
Q Consensus 61 p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l~~~ 126 (479)
++.+|++.. +|+ .+...+......+...++.++|++...+|-...+ +...++.+..|+..+.. +.
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-YR 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-SS
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEe-CC
Confidence 356777765 788 8776655544444335788999999888865433 34566778889888766 45
Q ss_pred cchHHHHHHHHhccceEEEeChhhHHHHHHhhc----cCCcceEEecC
Q psy8225 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKD----SIPGISLYAAG 170 (479)
Q Consensus 127 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~ 170 (479)
..++.+...+++.++.+++........+.+... ..+.++.+..+
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 315 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASG 315 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEEC
T ss_pred CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEe
Confidence 778899999999999999998877665544321 23355555444
No 56
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=71.43 E-value=30 Score=33.63 Aligned_cols=83 Identities=14% Similarity=-0.022 Sum_probs=64.4
Q ss_pred EEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEE
Q psy8225 226 AVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVA 301 (479)
Q Consensus 226 v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 301 (479)
..+|.+.+...+..+.. ..+++++|++...++-+.. ++..+++++..|+..+..+ ....+++...+++.++.++
T Consensus 30 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 107 (509)
T 3ivr_A 30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE--MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVV 107 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEE
T ss_pred cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEE
Confidence 46899888876665554 4478999999998886644 3567788999999988766 5678888899999999999
Q ss_pred EEehHHHHH
Q psy8225 302 QYIGEMCRY 310 (479)
Q Consensus 302 ~~~p~~l~~ 310 (479)
+..+.....
T Consensus 108 i~~~~~~~~ 116 (509)
T 3ivr_A 108 VAGTDYRDI 116 (509)
T ss_dssp EECSTTHHH
T ss_pred EECcchhhh
Confidence 987765444
No 57
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=71.30 E-value=34 Score=34.66 Aligned_cols=109 Identities=7% Similarity=-0.056 Sum_probs=74.4
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHH--HHHHHhhhcCceeeeec
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV--CMWLGLSKIGVVAAFIN 124 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~v~l~ 124 (479)
.++.+|++.. +|. .+...+..... ...+++++|++....+-+..+- ..+++.+..|+..+...
T Consensus 254 ~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 254 NAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp ETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred CCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 4567777776 788 76544322111 2247899999988887665543 34678899999888776
Q ss_pred CC---cchHHHHHHHHhccceEEEeChhhHHHHHHhhc------cCCcceEEecC
Q psy8225 125 TN---QRQHILIHSIKVAECKAIIYGAELSEALTEVKD------SIPGISLYAAG 170 (479)
Q Consensus 125 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~~ 170 (479)
.. ..+..+..++++.++.++++.......+.+... ..+.++.+...
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~g 386 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSV 386 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEe
Confidence 42 467889999999999999998887766654322 23456655443
No 58
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=69.84 E-value=51 Score=32.37 Aligned_cols=101 Identities=8% Similarity=-0.061 Sum_probs=71.3
Q ss_pred CCCCcEEEEEccC-CCCCcceEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225 206 KPSDKLAYIYTSG-TTGLPKAAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281 (479)
Q Consensus 206 ~~~~~~~i~~TSG-TTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 281 (479)
.++.++++....+ ..+. .-.+|...+...+..+.. ..+++++|++...++-+.. ++..+++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEcc
Confidence 4566666654321 1121 245788888766655543 4578999999998886654 356778899999998877
Q ss_pred C-CCChhHHHHHHHHhcccEEEEehHHHHH
Q psy8225 282 S-KFSASNFWKDCIKYNCTVAQYIGEMCRY 310 (479)
Q Consensus 282 ~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~ 310 (479)
+ ....+++...+++.++..++..+.....
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~ 137 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYEN 137 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHH
Confidence 6 5678888899999999999888765544
No 59
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=68.36 E-value=34 Score=33.56 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=68.6
Q ss_pred CCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225 206 KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282 (479)
Q Consensus 206 ~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 282 (479)
.++.++++. +.+| -.+|...+...+..+.. ..+++++|++...+|-+.. ++..+++++..|+..+...
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEeccC
Confidence 456666543 2222 35788888776665543 4578999999988887654 3567788899999888766
Q ss_pred -CCChhHHHHHHHHhcccEEEEehHHHH
Q psy8225 283 -KFSASNFWKDCIKYNCTVAQYIGEMCR 309 (479)
Q Consensus 283 -~~~~~~~~~~i~~~~~t~~~~~p~~l~ 309 (479)
....+++...++..++..++..+....
T Consensus 106 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 133 (536)
T 3ni2_A 106 PFSTPAELAKHAKASRAKLLITQACYYE 133 (536)
T ss_dssp TTCCHHHHHHHHHHHTEEEEEECGGGTH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEChHHHH
Confidence 567888889999999999988765443
No 60
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=67.20 E-value=29 Score=31.72 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=50.0
Q ss_pred HHHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 84 FFKSKG-LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 84 ~L~~~g-i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
...+.| +++|+.|.+....+-.-..+.++|...|..++.+-|...+.+-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344556 488887644445566677778888888998888877777777788899999999999754
No 61
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=67.16 E-value=22 Score=35.12 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=69.1
Q ss_pred Eeh-hhHHHHHHHHHHHHH-----cCCCCCCEEEEEcCCchHH-HHHHHHhhhcCceeeeecCCcchHHHHHHHHhccce
Q psy8225 70 VTF-QVEDHSNRIANFFKS-----KGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECK 142 (479)
Q Consensus 70 ~Ty-~l~~~~~~la~~L~~-----~gi~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 142 (479)
+|+ .+...+..++..+.. ..+...+++....+....+ +..++..+..|+..+........+.+...+++.++.
T Consensus 195 ~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t 274 (562)
T 3ite_A 195 VSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVT 274 (562)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCC
T ss_pred ECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCC
Confidence 899 998888887776642 3567778888777765543 334667788888777655444456778899999999
Q ss_pred EEEeChhhHHHHHHhhccCCcceEEecC
Q psy8225 143 AIIYGAELSEALTEVKDSIPGISLYAAG 170 (479)
Q Consensus 143 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (479)
++.........+.......+.++.+..+
T Consensus 275 ~~~~~P~~l~~~~~~~~~~~~lr~~~~g 302 (562)
T 3ite_A 275 HAGIVPSLLDQTGLVPEDAPHLVYLGVG 302 (562)
T ss_dssp EEEECHHHHHHHTCCGGGSTTCCEEEEE
T ss_pred EEEcCHHHHhhcccCccccCceEEEEEe
Confidence 9999887655443333345566655444
No 62
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=65.11 E-value=39 Score=32.81 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=67.2
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH--HHHHHHhhhcCceeeeec
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY--VCMWLGLSKIGVVAAFIN 124 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~v~l~ 124 (479)
.++.+|++.. +|+ .+...+..+...+ ++.++|++...+|-...+ +..+++.+..|+.++..
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~- 228 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL- 228 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence 4667787776 889 8888777666555 788999988888754333 33578888899888766
Q ss_pred CCcchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 125 TNQRQHILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
+....+.+...+ +.++..++........+.+
T Consensus 229 ~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 229 GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 456777777777 6789999988776655544
No 63
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=64.33 E-value=40 Score=33.40 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=69.8
Q ss_pred CCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh---hc-CCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225 206 KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QT-GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281 (479)
Q Consensus 206 ~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~-~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 281 (479)
.++.++++.... .| ....+|...+...+..+.. .. +++++|++...+|-+.. ++..+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE--WWLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEec
Confidence 456666654321 12 2356888888766655443 33 78899999988886544 356678888999988876
Q ss_pred C-CCChhHHHHHHHHhcccEEEEehHHHHH
Q psy8225 282 S-KFSASNFWKDCIKYNCTVAQYIGEMCRY 310 (479)
Q Consensus 282 ~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~ 310 (479)
+ ....+++...++..++..++..+.....
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 159 (570)
T 3c5e_A 130 TIQMKSTDILYRLQMSKAKAIVAGDEVIQE 159 (570)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEETTTHHH
T ss_pred CCCCCHHHHHHHHHhcCCeEEEechHHHHH
Confidence 5 4678888899999999999887765544
No 64
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=64.16 E-value=47 Score=32.59 Aligned_cols=84 Identities=12% Similarity=-0.142 Sum_probs=64.2
Q ss_pred eEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccE
Q psy8225 225 AAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTV 300 (479)
Q Consensus 225 ~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 300 (479)
...+|...+...+..+.. ..+++++|++...++-+.. ++..+++++..|+..+..+ ....+++...+++.++.+
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 122 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKV 122 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcE
Confidence 356888888776655543 4578999999988886543 3566788899999988765 567888889999999999
Q ss_pred EEEehHHHHH
Q psy8225 301 AQYIGEMCRY 310 (479)
Q Consensus 301 ~~~~p~~l~~ 310 (479)
++..+.....
T Consensus 123 vi~~~~~~~~ 132 (541)
T 1v25_A 123 LLFDPNLLPL 132 (541)
T ss_dssp EEECGGGHHH
T ss_pred EEEChhHHHH
Confidence 9988765543
No 65
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=63.46 E-value=82 Score=30.05 Aligned_cols=102 Identities=13% Similarity=0.009 Sum_probs=71.2
Q ss_pred CCCCcEEEEEcc--CCCCCcceEEeehHHHHHHhhhhhhhc---CCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225 206 KPSDKLAYIYTS--GTTGLPKAAVMTHVRAMFMAISGRYQT---GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280 (479)
Q Consensus 206 ~~~~~~~i~~TS--GTTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~ 280 (479)
.++.++++.... +.+| ....+|.+.+...+..+...+ +. ++|++...++-+.. ++..+++++..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE--YVVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEe
Confidence 456677665432 2222 236789988887766655433 44 88999888876544 35677889999998887
Q ss_pred cCC----CChhHHHHHHHHhcccEEEEehHHHHHHh
Q psy8225 281 RSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLL 312 (479)
Q Consensus 281 ~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~ 312 (479)
... ...+++...+++.++..++..+.....+.
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 653 45678888999999999998877665543
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=63.37 E-value=56 Score=33.09 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=69.4
Q ss_pred CCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh---h-hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225 206 KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---Y-QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281 (479)
Q Consensus 206 ~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~-~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 281 (479)
.++.++++.. +..+| ....+|.+.+...+..+. . ..+++++|++...+|.+-.+ +..+++++..|+..+..
T Consensus 95 ~pd~~Al~~~-~~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEE-cCCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEee
Confidence 4566666543 22222 234688888876655544 3 56788999999999976543 56778899999988866
Q ss_pred C-CCChhHHHHHHHHhcccEEEEehH
Q psy8225 282 S-KFSASNFWKDCIKYNCTVAQYIGE 306 (479)
Q Consensus 282 ~-~~~~~~~~~~i~~~~~t~~~~~p~ 306 (479)
. .+.++++...+++.++.++++.+.
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 5 678899999999999999988654
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=62.94 E-value=73 Score=31.43 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=63.3
Q ss_pred EEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEE
Q psy8225 226 AVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVA 301 (479)
Q Consensus 226 v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 301 (479)
-.+|.+.+...+..+.. ..+++++|++...++-+.. ++..+++++..|+..+..+ ....+++...+++.++..+
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~l 140 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARML 140 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEE
Confidence 36888888766655443 4578999999888886643 3566788899999988766 5677888899999999999
Q ss_pred EEehHHHHH
Q psy8225 302 QYIGEMCRY 310 (479)
Q Consensus 302 ~~~p~~l~~ 310 (479)
+..+.....
T Consensus 141 i~~~~~~~~ 149 (563)
T 1amu_A 141 LTQKHLVHL 149 (563)
T ss_dssp EECGGGHHH
T ss_pred EEcCchhhh
Confidence 988765543
No 68
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=62.88 E-value=41 Score=32.84 Aligned_cols=81 Identities=9% Similarity=-0.009 Sum_probs=61.7
Q ss_pred EeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEE
Q psy8225 227 VMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQ 302 (479)
Q Consensus 227 ~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 302 (479)
.+|...+...+..+.. ..+++++|++...++-+.. ++..+++++..|+..+..+ ...++++...+++.++..++
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 125 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEE
Confidence 5788888776655543 4578899999988886544 3566788889999888765 56788888999999999988
Q ss_pred EehHHHH
Q psy8225 303 YIGEMCR 309 (479)
Q Consensus 303 ~~p~~l~ 309 (479)
..+....
T Consensus 126 ~~~~~~~ 132 (529)
T 2v7b_A 126 ASGALVQ 132 (529)
T ss_dssp EEGGGHH
T ss_pred echhhhh
Confidence 8766543
No 69
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=61.56 E-value=34 Score=34.37 Aligned_cols=108 Identities=12% Similarity=-0.001 Sum_probs=74.3
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH-HHHHHHhhhcCceeeeec-
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFIN- 124 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l~- 124 (479)
.|+.+|++.. +|+ .+...+.. ....++.++|++...++-+.+. +..+++.+..|+.++..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 4677888776 788 77543322 2334889999999998876554 344678888888777653
Q ss_pred CCcchHHHHHHHHhccceEEEeChhhHHHHHHh-hccCCcceEEecCC
Q psy8225 125 TNQRQHILIHSIKVAECKAIIYGAELSEALTEV-KDSIPGISLYAAGT 171 (479)
Q Consensus 125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~ 171 (479)
....++.+...+++.++.++.........+.+. ....+.++.+..+.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gG 285 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGG 285 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEES
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEe
Confidence 356788999999999999999887766655432 22344566555443
No 70
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=61.18 E-value=69 Score=31.77 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=68.9
Q ss_pred CCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225 206 KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282 (479)
Q Consensus 206 ~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 282 (479)
.++.++++..... | ....+|...+...+..+.. ..+++++|++...+|-+.. ++..+++++..|+..+...
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeCC
Confidence 5677777654321 2 2457888888766655443 4578999999998886644 3567788899999888765
Q ss_pred -CCChhHHHHHHHHhcccEEEEeh
Q psy8225 283 -KFSASNFWKDCIKYNCTVAQYIG 305 (479)
Q Consensus 283 -~~~~~~~~~~i~~~~~t~~~~~p 305 (479)
.+..+++...+++.++..++..+
T Consensus 143 ~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 143 HMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TTCCHHHHHHHHHHHTCCEEEEES
T ss_pred ccCCHHHHHHHHHhcCCCEEEEec
Confidence 56788889999999999988754
No 71
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=59.87 E-value=37 Score=31.15 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 79 NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 79 ~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
..+.....+--+++|.+..+....+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444333323677876666777777788888999999999998888888888889999999999999753
No 72
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=56.89 E-value=52 Score=31.91 Aligned_cols=79 Identities=9% Similarity=-0.080 Sum_probs=61.4
Q ss_pred EeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEE
Q psy8225 227 VMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQ 302 (479)
Q Consensus 227 ~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 302 (479)
.+|...+...+..+.. ..+++++|++...++-+.. ++..+++++..|+..+..+ ....+++...+++.++.+++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 5788888776665543 4478999999998886654 3567788999999988766 56788888999999999998
Q ss_pred EehHH
Q psy8225 303 YIGEM 307 (479)
Q Consensus 303 ~~p~~ 307 (479)
..+..
T Consensus 106 ~~~~~ 110 (503)
T 4fuq_A 106 CDPSK 110 (503)
T ss_dssp ECGGG
T ss_pred ECchh
Confidence 87643
No 73
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=54.47 E-value=86 Score=30.91 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=61.3
Q ss_pred EeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEE
Q psy8225 227 VMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQ 302 (479)
Q Consensus 227 ~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 302 (479)
.+|.+.+...+..+.. ..+++++|++...++-+..+ +..+++++..|+..+... ....+++...+++.++.+++
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 177 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM--VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLV 177 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEE
Confidence 5888888776665543 45789999999988866543 567788999999988766 56788888999999999988
Q ss_pred EehHH
Q psy8225 303 YIGEM 307 (479)
Q Consensus 303 ~~p~~ 307 (479)
.....
T Consensus 178 ~~~~~ 182 (570)
T 4gr5_A 178 TSRPL 182 (570)
T ss_dssp ECTTT
T ss_pred ecchh
Confidence 76543
No 74
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=53.84 E-value=1.1e+02 Score=29.15 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=48.7
Q ss_pred HHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 85 FKSKG-LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 85 L~~~g-i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
..+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34556 46775444445556677777888999999888887877777788899999999999974
No 75
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=52.90 E-value=1.1e+02 Score=27.39 Aligned_cols=64 Identities=6% Similarity=-0.016 Sum_probs=45.6
Q ss_pred HHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 85 FKSKGL-QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 85 L~~~gi-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344554 66666555 44455555666777799998888877766666777889999999999853
No 76
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=50.10 E-value=1e+02 Score=28.00 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=46.1
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 84 FFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
.++..++++|++|+|...-+.-..++.++....|+.++.+... ++-..+.+..+++.++...
T Consensus 155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~---~~r~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN---QDKLNLAKKIGADVTINSG 216 (348)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC---HHHHHHHHHTTCSEEEEC-
T ss_pred eecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc---HHHhhhhhhcCCeEEEeCC
Confidence 4555689999999999998888888888887778877766543 2234567778888888643
No 77
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=49.56 E-value=1.2e+02 Score=27.60 Aligned_cols=65 Identities=8% Similarity=-0.045 Sum_probs=46.5
Q ss_pred HHHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 84 FFKSKGL-QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 84 ~L~~~gi-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
.+.+.|. ++|+.|...+. +-.-..+.++|...|..++.+-|...+.+-...++..++++++++..
T Consensus 68 ~a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 68 QAIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444454 67776655554 44555666777789998888877766677778899999999999863
No 78
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=47.68 E-value=1e+02 Score=27.79 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=46.4
Q ss_pred HHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 85 FKSKG-LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 85 L~~~g-i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
+.+.| +++|+...+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34556 456643333444565666677778899998888877766677778899999999999753
No 79
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=47.60 E-value=1.3e+02 Score=26.95 Aligned_cols=64 Identities=5% Similarity=-0.040 Sum_probs=46.2
Q ss_pred HHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 85 FKSKGL-QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 85 L~~~gi-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
+.+.|. ++++.|.-.+ .+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++..
T Consensus 53 a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344454 6666555544 455556666777899998888777766677778899999999999764
No 80
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=45.22 E-value=58 Score=34.79 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=68.3
Q ss_pred CCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225 206 KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282 (479)
Q Consensus 206 ~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 282 (479)
.++.++++. +.+| ..+|...+...+..+.. ..+++++|++...+|-+.. ++..+++++..|+..+..+
T Consensus 74 ~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 74 FATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE--FVLSFLAASFRGATATAAN 144 (979)
T ss_dssp TTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEEEeeC
Confidence 466676653 2222 45788888776655543 4578999999998887643 4567788899999988665
Q ss_pred -CCChhHHHHHHHHhcccEEEEehHH
Q psy8225 283 -KFSASNFWKDCIKYNCTVAQYIGEM 307 (479)
Q Consensus 283 -~~~~~~~~~~i~~~~~t~~~~~p~~ 307 (479)
.+.++++...+++.++.+++..+..
T Consensus 145 ~~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 145 PFFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp TTSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred CCCCHHHHHHHHHHcCCeEEEEChHH
Confidence 5688889999999999999887654
No 81
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=45.06 E-value=1.1e+02 Score=29.91 Aligned_cols=83 Identities=11% Similarity=-0.062 Sum_probs=62.0
Q ss_pred EEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC-CC-------hhHHHHHHH
Q psy8225 226 AVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK-FS-------ASNFWKDCI 294 (479)
Q Consensus 226 v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-~~-------~~~~~~~i~ 294 (479)
-.+|.+.+...+..+.. ..+++++|++...+|-+.. ++..+++++..|+..+..+. .. ..++...++
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE--FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 56888888776665544 4578999999998887654 35677889999998887653 33 467788888
Q ss_pred HhcccEEEEehHHHHH
Q psy8225 295 KYNCTVAQYIGEMCRY 310 (479)
Q Consensus 295 ~~~~t~~~~~p~~l~~ 310 (479)
..++..+.........
T Consensus 126 ~~~~~~ii~~~~~~~~ 141 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPL 141 (576)
T ss_dssp HHCCSEEEECGGGHHH
T ss_pred hcCCCEEEecHHHHHH
Confidence 9999999887765443
No 82
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=45.03 E-value=1.2e+02 Score=27.01 Aligned_cols=64 Identities=8% Similarity=0.060 Sum_probs=45.4
Q ss_pred HHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 85 FKSKGL-QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 85 L~~~gi-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
+.+.|. ++|+.|.. ...+-.-..+.++|...|..++.+-|...+.+-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334453 56665544 44455556667777889998888777666666777889999999999864
No 83
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=42.33 E-value=1.8e+02 Score=26.11 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHcC-CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 85 FKSKG-LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 85 L~~~g-i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
..+.| +++++.|...+ .+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++.
T Consensus 64 a~~~g~l~~~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 64 AEADGLLRPGATILEPT-SGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 34445 46777765554 45555677777788899888887777777778889999999999975
No 84
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=41.63 E-value=1.5e+02 Score=26.39 Aligned_cols=62 Identities=8% Similarity=0.106 Sum_probs=45.3
Q ss_pred HHcC-CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 86 KSKG-LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 86 ~~~g-i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
.+.| +++|+.|...+. +-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 53 ~~~g~~~~g~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 53 EKRGEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHTTCCCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 3445 366776666553 4455566677779999888887776667777889999999999975
No 85
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=41.08 E-value=76 Score=30.79 Aligned_cols=77 Identities=9% Similarity=-0.191 Sum_probs=58.5
Q ss_pred EeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEE
Q psy8225 227 VMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQ 302 (479)
Q Consensus 227 ~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 302 (479)
.+|...+...+..+.. ..++.++|++...++-+.. ++..+++++..|+..+..+ ....+++...++..++..++
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD--MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 4788888776665544 4578899999888876543 3566788889999888654 56788899999999999887
Q ss_pred Eeh
Q psy8225 303 YIG 305 (479)
Q Consensus 303 ~~p 305 (479)
...
T Consensus 107 ~~~ 109 (521)
T 3l8c_A 107 AIE 109 (521)
T ss_dssp ESS
T ss_pred ecC
Confidence 644
No 86
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=41.06 E-value=1.9e+02 Score=25.61 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=44.7
Q ss_pred HHHcC-CCCCC--EEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 85 FKSKG-LQRGD--AVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 85 L~~~g-i~~gd--~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
+.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 46666 4443 34444555666777899998888777666667778889999999999764
No 87
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=41.05 E-value=85 Score=28.98 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC-----cchHHHHHHHHhcc--ceEEEeC
Q psy8225 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN-----QRQHILIHSIKVAE--CKAIIYG 147 (479)
Q Consensus 80 ~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~vi~~ 147 (479)
.+...|...++++||.|.+-.+....+ .-++...|+.++.++.. ...+++...++..+ .++|+..
T Consensus 65 al~~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 65 GLMAAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 334445556789999998877765544 34566789887766542 46778888774444 7777754
No 88
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=37.35 E-value=61 Score=29.49 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=36.9
Q ss_pred CCCCCCEEEEEcCCch------HHHHHHHH-hhhcCceeeeec------------CCcchHHHHHHHHhccceEEEeC
Q psy8225 89 GLQRGDAVALFMEGQP------EYVCMWLG-LSKIGVVAAFIN------------TNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 89 gi~~gd~V~i~~~n~~------e~~~~~lA-~~~~G~~~v~l~------------~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
-+++||+|+|++|.+. +-+-.... +-..|..++.-. +....+++...+.+-++++|++.
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 4789999999999752 22222222 234576655321 11235677778888899999985
No 89
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=36.82 E-value=1.1e+02 Score=27.40 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=40.3
Q ss_pred HHHHcCCCCCCEEEEEc-CCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeC
Q psy8225 84 FFKSKGLQRGDAVALFM-EGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~-~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
.|...++++|++|+|.. .-.+-.+++.+|- ..|+.++.+. +.++ ..++++.+++.++..
T Consensus 144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i~~ 203 (321)
T 3tqh_A 144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQCINY 203 (321)
T ss_dssp HHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEEEET
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEEEeC
Confidence 44556899999999997 5666666666665 5688666553 3344 556677888877653
No 90
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=36.77 E-value=85 Score=28.73 Aligned_cols=58 Identities=9% Similarity=-0.016 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhh
Q psy8225 92 RGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL 150 (479)
Q Consensus 92 ~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 150 (479)
+.+.|.-.+ .+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++...
T Consensus 75 ~~~~vv~~S-sGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 75 KPKAVVTHS-SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CCSCEEEEC-SSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEeC-CCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 334444443 4555566778889999988888787777777889999999999997653
No 91
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=36.20 E-value=65 Score=29.43 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEcCCchH------HHHHHHHhh-hcCceeeeec------------CCcchHHHHHHHHhccceEEEeCh
Q psy8225 89 GLQRGDAVALFMEGQPE------YVCMWLGLS-KIGVVAAFIN------------TNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 89 gi~~gd~V~i~~~n~~e------~~~~~lA~~-~~G~~~v~l~------------~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-. +....+++...+.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998732 222222222 3577665421 112345677777778889999853
No 92
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=34.78 E-value=1.2e+02 Score=27.63 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=40.5
Q ss_pred HHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEE
Q psy8225 83 NFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAII 145 (479)
Q Consensus 83 ~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 145 (479)
..|.+.++++|++|+|...-.+-.+++.+|- ..|+.++.+..+.... .+++..+++.++
T Consensus 167 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~~~---~~~~~lGa~~v~ 225 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEHKK---QDALSMGVKHFY 225 (348)
T ss_dssp HHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSSTTH---HHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHH---HHHHhcCCCeec
Confidence 3556668999999999988666777777765 4688766665443322 345667787777
No 93
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=33.07 E-value=1.6e+02 Score=26.83 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=43.7
Q ss_pred HHHHH--cCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 83 NFFKS--KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 83 ~~L~~--~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
..|.+ .++++|++|+|...-.+-..++.+|-...|+.++.+..+ .+ -..+++..+++.++...
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~--~~-~~~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK--EE-KLKLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS--HH-HHHHHHHTTCSEEEETT
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HH-HHHHHHHhCCCEEEecc
Confidence 34555 689999999999997777777777765548866655543 22 33455678888887643
No 94
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=32.91 E-value=1.3e+02 Score=27.35 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHH-cCCCCCCEEEEEcC-CchHHHHHHHHhhhcCcee-eeecCCcchHHHHHHHHhccceEEEeC
Q psy8225 84 FFKS-KGLQRGDAVALFME-GQPEYVCMWLGLSKIGVVA-AFINTNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 84 ~L~~-~gi~~gd~V~i~~~-n~~e~~~~~lA~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
.|.+ .++++|++|+|... -.+-.+++.+|-. .|+.. +........++....++..+++.++..
T Consensus 158 ~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp HHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred HHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 4444 38999999999998 5666777776654 57744 444444344455566778888888753
No 95
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=32.09 E-value=74 Score=29.53 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=36.7
Q ss_pred CCCCCCEEEEEcCCchH------HHHHHHHhh-hcCceeeeec------------CCcchHHHHHHHHhccceEEEeC
Q psy8225 89 GLQRGDAVALFMEGQPE------YVCMWLGLS-KIGVVAAFIN------------TNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 89 gi~~gd~V~i~~~n~~e------~~~~~lA~~-~~G~~~v~l~------------~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-. +....++|...+.+-++++|++.
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 47899999999998642 222222222 3677665331 11234567777777888999985
No 96
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=31.95 E-value=86 Score=27.70 Aligned_cols=100 Identities=12% Similarity=0.182 Sum_probs=55.1
Q ss_pred HHHHHhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecC--C
Q psy8225 52 LFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT--N 126 (479)
Q Consensus 52 ~l~~~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~--~ 126 (479)
+-+...+..|+.-+.... .+ ++.++.+.+-..+++. .+ ++ +..+...+...++.-.|++-..|.. -+.+ .
T Consensus 132 I~~~L~~~dP~~a~~y~~-N~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~e 206 (284)
T 2prs_A 132 IHGKLVELMPQSRAKLDA-NLKDFEAQLASTETQVGNELAPL-KG-KGYFVFHDAYGYFEKQFGLTPLGHF--TVNPEIQ 206 (284)
T ss_dssp HHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHGGG-TT-CCEEEEESCCHHHHHHHTCCCCEEE--ESSTTSC
T ss_pred HHHHHHHhCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC-CC-CeEEEECccHHHHHHHCCCeEeEee--ccCCCCC
Confidence 333344456654443332 23 3333333333333322 22 23 4456678889999999998876533 2333 2
Q ss_pred cchH---HHHHHHHhccceEEEeChhhHHHHHH
Q psy8225 127 QRQH---ILIHSIKVAECKAIIYGAELSEALTE 156 (479)
Q Consensus 127 ~~~~---~l~~~l~~~~~~~vi~~~~~~~~~~~ 156 (479)
-+++ ++...++..++++||++....+...+
T Consensus 207 ps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~ 239 (284)
T 2prs_A 207 PGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVE 239 (284)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Confidence 3444 45556677899999998776544433
No 97
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=31.16 E-value=1e+02 Score=27.31 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=62.5
Q ss_pred HHHHHHhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecC--
Q psy8225 51 PLFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-- 125 (479)
Q Consensus 51 ~~l~~~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~-- 125 (479)
.+-+...+..|+.-.... -.+ ++.++.+++-..+++. .+ ++ +..+...+...++.-.|++-..+.. -+++
T Consensus 136 ~I~~~L~~~dP~~a~~y~-~N~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~ 210 (286)
T 3gi1_A 136 NIAKELGRLDPKHKDSYT-KNAKAFKKEAEQLTEEYTQKFKKV-RS-KTFVTQHTAFSYLAKRFGLKQLGIS--GISPEQ 210 (286)
T ss_dssp HHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHTTC-SC-CEEEEEESCCHHHHHHTTCEEEEEE--CSCC--
T ss_pred HHHHHHHHHChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-CC-CEEEEECCchHHHHHHCCCeEeecc--ccCCCC
Confidence 344444455666554322 234 4445555555555443 23 34 4556777888888888887766522 2322
Q ss_pred CcchH---HHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEec
Q psy8225 126 NQRQH---ILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAA 169 (479)
Q Consensus 126 ~~~~~---~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 169 (479)
.-++. ++...++..++++||++....+...+....-.+.+++.+
T Consensus 211 eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l 257 (286)
T 3gi1_A 211 EPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTL 257 (286)
T ss_dssp -CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEe
Confidence 23444 455566778999999987665444333332224444443
No 98
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=31.15 E-value=79 Score=28.78 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCchH------HHHHHHHhh-hcCceeeeec------------CCcchHHHHHHHHhccceEEEeC
Q psy8225 89 GLQRGDAVALFMEGQPE------YVCMWLGLS-KIGVVAAFIN------------TNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 89 gi~~gd~V~i~~~n~~e------~~~~~lA~~-~~G~~~v~l~------------~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-. +....+++...+.+-++++|++.
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 85 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTT 85 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 47899999999998642 222222222 3576665321 11234567777777888899885
No 99
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=31.13 E-value=1.5e+02 Score=26.81 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 83 NFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 83 ~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
..|...++++|++|+|...-.+-.+++.+|-. .|+.++.+..+ .+. ..+++..+++.++...
T Consensus 157 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~~--~~~-~~~~~~lGa~~~i~~~ 218 (340)
T 3s2e_A 157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDID--DAK-LNLARRLGAEVAVNAR 218 (340)
T ss_dssp HHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEESC--HHH-HHHHHHTTCSEEEETT
T ss_pred HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--HHH-HHHHHHcCCCEEEeCC
Confidence 34555689999999999886677777777764 58876666443 233 3456778888877643
No 100
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=30.05 E-value=2.4e+02 Score=26.19 Aligned_cols=90 Identities=9% Similarity=0.092 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh------hhcCceeeeecCCcchHHHHHHHHhccc---eEEE
Q psy8225 75 EDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL------SKIGVVAAFINTNQRQHILIHSIKVAEC---KAII 145 (479)
Q Consensus 75 ~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~------~~~G~~~v~l~~~~~~~~l~~~l~~~~~---~~vi 145 (479)
+..+..+-..|+++|+ .++|+..|..+.+...+.- -..+...+.+...-.++.+.+++++.+. ++++
T Consensus 258 ypgv~e~L~~Lk~~Gi----~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~KPKp~~l~~al~~Lgl~pee~v~ 333 (387)
T 3nvb_A 258 FTEFQEWVKKLKNRGI----IIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFDSMVF 333 (387)
T ss_dssp HHHHHHHHHHHHHTTC----EEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred CHHHHHHHHHHHHCCC----EEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCCCcHHHHHHHHHHhCcCcccEEE
Confidence 4456677778888776 5999999998888877753 2345555555555556777888877664 5777
Q ss_pred eChhhHHHHHHhhccCCcceEEec
Q psy8225 146 YGAELSEALTEVKDSIPGISLYAA 169 (479)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~ 169 (479)
++++..+. ..+...++.+.++.+
T Consensus 334 VGDs~~Di-~aaraalpgV~vi~~ 356 (387)
T 3nvb_A 334 LDDNPFER-NMVREHVPGVTVPEL 356 (387)
T ss_dssp ECSCHHHH-HHHHHHSTTCBCCCC
T ss_pred ECCCHHHH-HHHHhcCCCeEEEEc
Confidence 77765543 333445555555433
No 101
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=29.26 E-value=1.5e+02 Score=26.82 Aligned_cols=62 Identities=8% Similarity=-0.021 Sum_probs=43.8
Q ss_pred HHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 84 FFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 84 ~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
.|.+. ++++|++|+|...-.+-.+++.+|-..-|+.++.++.. . +-..+++..+++.++...
T Consensus 161 ~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~-~~~~~~~~lGa~~~i~~~ 224 (345)
T 3jv7_A 161 AISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--D-DRLALAREVGADAAVKSG 224 (345)
T ss_dssp HHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--H-HHHHHHHHTTCSEEEECS
T ss_pred HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--H-HHHHHHHHcCCCEEEcCC
Confidence 44553 78999999999987778888888877657766666543 2 334456778888887644
No 102
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=28.89 E-value=82 Score=28.35 Aligned_cols=101 Identities=10% Similarity=0.122 Sum_probs=54.2
Q ss_pred HHHHHHhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCc
Q psy8225 51 PLFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127 (479)
Q Consensus 51 ~~l~~~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~ 127 (479)
.+-+...+..|+.-+.... .+ ++.++.+++-..+++. .+ ++ +..+...+...++.-.|++-..|..-+-=...-
T Consensus 147 ~I~~~L~~~DP~~a~~Y~~-N~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~ep 223 (312)
T 2o1e_A 147 NITAQIVKQDPDNKEYYEK-NSKEYIAKLQDLDKLYRTTAKKA-EK-KEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEP 223 (312)
T ss_dssp HHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHHSC-SC-CEEEESSCTTHHHHHHTTCEEEECSSCCSSSCC
T ss_pred HHHHHHHHhCchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc-CC-CEEEEECCchHHHHHHCCCeEEEeeccCCCCCC
Confidence 3333344456655443332 23 3333444443433332 23 33 456777888888888887776553221112234
Q ss_pred chHHHHH---HHHhccceEEEeChhhHHHH
Q psy8225 128 RQHILIH---SIKVAECKAIIYGAELSEAL 154 (479)
Q Consensus 128 ~~~~l~~---~l~~~~~~~vi~~~~~~~~~ 154 (479)
+++++.. .++..++++||++....+..
T Consensus 224 s~~~l~~l~~~ik~~~v~~If~e~~~~~~~ 253 (312)
T 2o1e_A 224 SAASLAKLKTYAKEHNVKVIYFEEIASSKV 253 (312)
T ss_dssp CHHHHHHHHHHTTSSCCCEEECSSCCCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCChHH
Confidence 5555555 45667899999987665543
No 103
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=28.75 E-value=1.1e+02 Score=25.85 Aligned_cols=81 Identities=19% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEE------ehHH--HHHHhcCCCCCCCCCCceeEEE-
Q psy8225 260 HTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQY------IGEM--CRYLLAVPEKPEDTQHSVKMMI- 329 (479)
Q Consensus 260 h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~------~p~~--l~~l~~~~~~~~~~l~~lr~~~- 329 (479)
|..|....-...-..|..++... ...++.+.+.+.++++.++.. +++. ++.+++..+..... ..+++++
T Consensus 105 HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~-~~v~v~vG 183 (215)
T 3ezx_A 105 HDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLR-DSVKCMFG 183 (215)
T ss_dssp CCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCG-GGSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCC-CCCEEEEE
Q ss_pred ecCCChhhHHHH
Q psy8225 330 GNGLRPQVWEPF 341 (479)
Q Consensus 330 G~~l~~~~~~~~ 341 (479)
|.+++++..+.+
T Consensus 184 G~~~~~~~a~~i 195 (215)
T 3ezx_A 184 GAPVSDKWIEEI 195 (215)
T ss_dssp SSSCCHHHHHHH
T ss_pred CCCCCHHHHHHh
No 104
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=28.16 E-value=2.1e+02 Score=26.30 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=40.2
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC----cchHHHHHHHHhc--cceEEEeC
Q psy8225 84 FFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN----QRQHILIHSIKVA--ECKAIIYG 147 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~ 147 (479)
.++..++++||.|.+..+....+.. ++...|+.++.++.. ...+++...++.. ++++|+..
T Consensus 63 ~~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 63 ALRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp HHHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred HHHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 3444457899999888887666543 344578877766543 4667888877754 56777654
No 105
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=27.90 E-value=1.1e+02 Score=33.85 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=66.8
Q ss_pred CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHH-HHHHHhhhcCceeeeecC
Q psy8225 60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV-CMWLGLSKIGVVAAFINT 125 (479)
Q Consensus 60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~-~~~lA~~~~G~~~v~l~~ 125 (479)
.|+.+|++.. +|. .+... .......++.++|++....+-+.+.. .-+++.+..|+..+..++
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 5777888776 788 77543 11222347889999998888766553 346778888888877765
Q ss_pred C--cchHHHHHHHHhccceEEEeChhhHHHHH
Q psy8225 126 N--QRQHILIHSIKVAECKAIIYGAELSEALT 155 (479)
Q Consensus 126 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 155 (479)
. ..++.+...+++.++.+++........+.
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~ 712 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLT 712 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHH
Confidence 3 56788999999999999998877665553
No 106
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=27.76 E-value=1.3e+02 Score=27.68 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=41.4
Q ss_pred EEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 95 AVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 95 ~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
.|.... .+-.-..+.++|.+.|..++.+-|...+.+....++..++++++++..
T Consensus 95 ~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~ 148 (364)
T 4h27_A 95 HFVCSS-SGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGEL 148 (364)
T ss_dssp EEEECC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSS
T ss_pred EEEEeC-CChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 444333 355556777778899998888888777778888999999999999754
No 107
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=27.53 E-value=2.4e+02 Score=26.51 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH---------HhhhcCceeeeecC---CcchHHHHHHHHh-ccceEEEe
Q psy8225 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWL---------GLSKIGVVAAFINT---NQRQHILIHSIKV-AECKAIIY 146 (479)
Q Consensus 80 ~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~l---------A~~~~G~~~v~l~~---~~~~~~l~~~l~~-~~~~~vi~ 146 (479)
.+...+... +++||.|.+...........++ .+...|+.+..++. ....+++...++. .++++|++
T Consensus 104 A~~~al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i 182 (427)
T 3hvy_A 104 AIGAALFGN-LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHI 182 (427)
T ss_dssp HHHHHHHHT-CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHh-cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEE
Confidence 333444444 6788888776512222222222 23346777766654 2456777777764 57788887
Q ss_pred Ch
Q psy8225 147 GA 148 (479)
Q Consensus 147 ~~ 148 (479)
..
T Consensus 183 ~~ 184 (427)
T 3hvy_A 183 QR 184 (427)
T ss_dssp ES
T ss_pred EC
Confidence 65
No 108
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=27.20 E-value=3.2e+02 Score=24.07 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=42.6
Q ss_pred HHHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 84 FFKSKGL-QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 84 ~L~~~gi-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
.+.+.|. +++ .| ....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 ~a~~~g~~~~~-vv--~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 57 DAEKRGLLKNG-IV--EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp HHHHTTCCTTC-EE--EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCC-EE--EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3344454 344 33 333344445666777799998888777666667778899999999999764
No 109
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=27.13 E-value=1.6e+02 Score=26.71 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=41.5
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc-eeeeecCCcchHHHHHHHHhccceEEEeC
Q psy8225 84 FFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV-VAAFINTNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
.+...++++|++|+|...-.+-.+++.+|- ..|+ .++.++.. ++-..+++..+++.++..
T Consensus 158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~---~~~~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 158 GAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR---KHCCDIALEYGATDIINY 218 (352)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC---HHHHHHHHHHTCCEEECG
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC---HHHHHHHHHhCCceEEcC
Confidence 455668999999999997666777766665 5687 56656543 233456677788887753
No 110
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=26.64 E-value=1.5e+02 Score=20.02 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=19.9
Q ss_pred HHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225 86 KSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV 118 (479)
Q Consensus 86 ~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 118 (479)
.+.+..+++.|.+++..+.....+...+...|.
T Consensus 34 ~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 34 ATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp HHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred HHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 334555666677777666665555555556665
No 111
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=26.50 E-value=3.1e+02 Score=25.02 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=39.6
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc-eeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225 84 FFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV-VAAFINTNQRQHILIHSIKVAECKAIIY 146 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 146 (479)
.|...++++|++|+|...-.+-.+++.+|- ..|+ .++.+... . +-..+++..+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~-~~~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--A-TKRRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--H-HHHHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--H-HHHHHHHHcCCCEEEC
Confidence 355568999999999998666666666665 5687 56655443 2 2334566677777764
No 112
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=26.32 E-value=1.6e+02 Score=26.87 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=38.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC-----cchHHHHHHHHhccceEEEeC
Q psy8225 83 NFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN-----QRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 83 ~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 147 (479)
..++..++++||.|.+..+....+. -++...|+.++.++.. ...+++...++. ++++|+..
T Consensus 69 ~~~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 69 IALMALGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHHHHTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHHHHcCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 3344445788999888777655543 3455678777666432 456777777654 56777764
No 113
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=26.29 E-value=49 Score=29.05 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCC
Q psy8225 79 NRIANFFKSKGLQRGDAVALFMEG 102 (479)
Q Consensus 79 ~~la~~L~~~gi~~gd~V~i~~~n 102 (479)
+.+...|+++|+++||.|.+.+.=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 678899999999999999998874
No 114
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=25.96 E-value=1.3e+02 Score=27.06 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=54.5
Q ss_pred HHhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecC--Ccch
Q psy8225 55 RTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT--NQRQ 129 (479)
Q Consensus 55 ~~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~--~~~~ 129 (479)
...+..|+.-.... -.+ ++.++.+.+-..+++. .++...+..+...+...++.-.|++-..+.. -+.+ .-++
T Consensus 156 ~L~~~DP~~a~~Y~-~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~--~~~~~~eps~ 232 (313)
T 1toa_A 156 SLCKLLPGKTREFT-QRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQ--GVSTASEASA 232 (313)
T ss_dssp HHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEE--CSSCSSCCCH
T ss_pred HHHHHChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEee--ccCCCCCCCH
Confidence 33444555443322 223 3344444444444332 3444456677788889999988888766532 2222 2345
Q ss_pred HH---HHHHHHhccceEEEeChhhHHH
Q psy8225 130 HI---LIHSIKVAECKAIIYGAELSEA 153 (479)
Q Consensus 130 ~~---l~~~l~~~~~~~vi~~~~~~~~ 153 (479)
++ +...++..++++||++....+.
T Consensus 233 ~~l~~l~~~ik~~~v~~If~e~~~~~~ 259 (313)
T 1toa_A 233 HDMQELAAFIAQRKLPAIFIESSIPHK 259 (313)
T ss_dssp HHHHHHHHHHHHTTCSEEEEETTSCTH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChH
Confidence 54 4556677899999998765443
No 115
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=25.87 E-value=62 Score=28.87 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=56.0
Q ss_pred HhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecC--CcchH
Q psy8225 56 TIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT--NQRQH 130 (479)
Q Consensus 56 ~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~--~~~~~ 130 (479)
..+..|+.-.... -.+ ++.++.+.+-..+++. .++.+++..+...+...++.-.|++-..+.. -+.+ .-++.
T Consensus 143 L~~~dP~~a~~y~-~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~ 219 (294)
T 3hh8_A 143 LIAKDPKNKETYE-KNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYIW--EINTEEEGTPD 219 (294)
T ss_dssp HHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEEEEE--SSCCSCCCCHH
T ss_pred HHHhCccchHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCceeecc--ccCCCCCCCHH
Confidence 3344554433222 344 5555666666666553 3333346667778899999998888765422 2222 23444
Q ss_pred H---HHHHHHhccceEEEeChhhHHH
Q psy8225 131 I---LIHSIKVAECKAIIYGAELSEA 153 (479)
Q Consensus 131 ~---l~~~l~~~~~~~vi~~~~~~~~ 153 (479)
+ +...++..++++||++....+.
T Consensus 220 ~l~~l~~~ik~~~v~~if~e~~~~~~ 245 (294)
T 3hh8_A 220 QISSLIEKLKVIKPSALFVESSVDRR 245 (294)
T ss_dssp HHHHHHHHHHHSCCSCEEEETTSCSH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcH
Confidence 4 5556677899999997665433
No 116
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=25.59 E-value=2.1e+02 Score=21.35 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee--cCCcchHHHHH
Q psy8225 82 ANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI--NTNQRQHILIH 134 (479)
Q Consensus 82 a~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l--~~~~~~~~l~~ 134 (479)
+.+|.+.|+.++..+.+...+..+.+-++-=+++.|...+.| -+..+..+.++
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RR 101 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 101 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 456777788887777777777777777777777777644444 23455444433
No 117
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=25.46 E-value=1.1e+02 Score=27.63 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=56.1
Q ss_pred HHHhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC--cc
Q psy8225 54 VRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN--QR 128 (479)
Q Consensus 54 ~~~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~--~~ 128 (479)
+...+..|+.-.... -.+ ++.++.+.+-..+++. .+....+..+...+...++.-.|++-..|. ..+++. -+
T Consensus 162 ~~L~~~DP~~a~~Y~-~Na~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~~yGL~~~~~--~~~~~~~eps 238 (321)
T 1xvl_A 162 QAFVELDPDNAKYYN-ANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYM--WPINAEQQFT 238 (321)
T ss_dssp HHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHHHTTCEEEEE--ESSSSSCSCC
T ss_pred HHHHHHCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHHHCCCeEEEe--eccCCCCCCC
Confidence 333445555443322 233 4444445554554442 233334666778888888888888876652 233332 34
Q ss_pred hHH---HHHHHHhccceEEEeChhhHHHH
Q psy8225 129 QHI---LIHSIKVAECKAIIYGAELSEAL 154 (479)
Q Consensus 129 ~~~---l~~~l~~~~~~~vi~~~~~~~~~ 154 (479)
+.+ +...++..++++||++....+..
T Consensus 239 ~~~l~~l~~~ik~~~v~~If~e~~~~~~~ 267 (321)
T 1xvl_A 239 PKQVQTVIEEVKTNNVPTIFCESTVSDKG 267 (321)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEETTSCSHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 444 45556778999999987665443
No 118
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=25.29 E-value=1.8e+02 Score=26.03 Aligned_cols=57 Identities=7% Similarity=0.065 Sum_probs=41.9
Q ss_pred CCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhh
Q psy8225 93 GDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL 150 (479)
Q Consensus 93 gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 150 (479)
++.|...+. +-.-..+.++|.+.|..++.+-|...+......++..++++++++...
T Consensus 54 ~~~vv~~ss-GN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~ 110 (318)
T 2rkb_A 54 CRHLVCSSG-GNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVW 110 (318)
T ss_dssp CCEEEECCC-SHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSH
T ss_pred CCEEEEECC-chHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCH
Confidence 344544443 555566677788999988888777667777888999999999987543
No 119
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=25.28 E-value=2e+02 Score=27.35 Aligned_cols=56 Identities=5% Similarity=0.001 Sum_probs=43.2
Q ss_pred EEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhH
Q psy8225 96 VALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS 151 (479)
Q Consensus 96 V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 151 (479)
..+....+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++....
T Consensus 162 ~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~ 217 (442)
T 3ss7_X 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYG 217 (442)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 44555555566677778889999888887777777778888999999999987543
No 120
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=25.06 E-value=2.3e+02 Score=26.70 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHH-HhhhcCceeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225 90 LQRGDAVALFMEGQPEYVCMWL-GLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY 146 (479)
Q Consensus 90 i~~gd~V~i~~~n~~e~~~~~l-A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 146 (479)
+++||.|.+..+.-......+- .+...|+.++.++.. ..+++...++. +.++|++
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~ 173 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFL 173 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEE
Confidence 4455555444333322222211 333445555554433 33444444432 3444443
No 121
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=24.83 E-value=3e+02 Score=24.65 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=36.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeec--CC----cchHHHHHHHHh----ccceEEEeC
Q psy8225 90 LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN--TN----QRQHILIHSIKV----AECKAIIYG 147 (479)
Q Consensus 90 i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~vi~~ 147 (479)
+++||.|.+..+....+... +...|+.++.++ .. ...+++...++. -++++|++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 46889888877765554433 567788777766 32 357788888774 356666653
No 122
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=24.83 E-value=1.2e+02 Score=27.24 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=56.4
Q ss_pred HhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC--cchH
Q psy8225 56 TIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN--QRQH 130 (479)
Q Consensus 56 ~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~--~~~~ 130 (479)
..+..|+.-.... -.+ ++.++.+.+-..+++. .+....+..+...+...++.-.|++-..+. ..+.+. -++.
T Consensus 150 L~~~DP~~a~~Y~-~Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~~--~~i~~~~ePs~~ 226 (307)
T 3ujp_A 150 FVELDPDNAKYYN-ANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYM--WPINAEQQFTPK 226 (307)
T ss_dssp HHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEEE--ESSCCSSCCCHH
T ss_pred HHHhCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEEe--eccCCCCCCCHH
Confidence 3344554433322 234 4555555555555543 343345677778888888888888775532 233332 3444
Q ss_pred ---HHHHHHHhccceEEEeChhhHHHH
Q psy8225 131 ---ILIHSIKVAECKAIIYGAELSEAL 154 (479)
Q Consensus 131 ---~l~~~l~~~~~~~vi~~~~~~~~~ 154 (479)
++...++..++++||++....+..
T Consensus 227 ~l~~l~~~ik~~~v~~If~e~~~~~k~ 253 (307)
T 3ujp_A 227 QVQTVIEEVKTNNVPTIFCESTVSDKG 253 (307)
T ss_dssp HHHHHHHHHHTTTCSEEEEETTSCSHH
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCChHH
Confidence 455567778999999987655543
No 123
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=24.78 E-value=1.8e+02 Score=26.55 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=41.4
Q ss_pred HHHHcCCC-CCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 84 FFKSKGLQ-RGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 84 ~L~~~gi~-~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
.|.+.+++ +|++|+|...-.+-..++.+|-. .|+.++.+... .+.+....+..+++.++...
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~ 233 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDYVIGS 233 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCEEETT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCceeeccc
Confidence 45566888 99999999986777777777665 57766555543 33343344477777776543
No 124
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=24.70 E-value=2.2e+02 Score=25.79 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc-eeeeecCCcchHHHHHHHHhccceEEEeC
Q psy8225 84 FFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV-VAAFINTNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
.|...++++|++|+|...-.+-..++.+|- ..|+ .++.+... . +-..+++..+++.++..
T Consensus 163 al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~-~~~~~a~~lGa~~vi~~ 223 (356)
T 1pl8_A 163 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDLS--A-TRLSKAKEIGADLVLQI 223 (356)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC--H-HHHHHHHHTTCSEEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--H-HHHHHHHHhCCCEEEcC
Confidence 344558999999999997666777777766 4577 55555433 2 23345567788777653
No 125
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=24.60 E-value=4.2e+02 Score=24.50 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=43.7
Q ss_pred CCC-EEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhh
Q psy8225 92 RGD-AVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL 150 (479)
Q Consensus 92 ~gd-~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 150 (479)
+.+ .|.. ...+-.-..+.++|.+.|..++.+-|...+.+-...++..++++++++...
T Consensus 110 ~~~~~vv~-aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~ 168 (398)
T 4d9i_A 110 GEKMTFAT-TTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNY 168 (398)
T ss_dssp SCCCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCH
T ss_pred cCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 344 3433 555556667777888889998888887777778888999999999998654
No 126
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=24.38 E-value=68 Score=28.42 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=54.2
Q ss_pred HHHHHHhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecC--
Q psy8225 51 PLFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-- 125 (479)
Q Consensus 51 ~~l~~~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~-- 125 (479)
.+-+...+..|+.-+.... .+ ++.++.+.+-..+++. .+ ++ +..+...+...++.-.|++-..|.. -+.+
T Consensus 134 ~I~~~L~~~dP~~a~~y~~-N~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~ 208 (284)
T 3cx3_A 134 IIADKLSEVDSEHKETYQK-NAQAFIKKAQELTKKFQPKFEKA-TQ-KTFVTQHTAFSYLAKRFGLNQLGIA--GISPEQ 208 (284)
T ss_dssp HHHHHHHHHSGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHHSC-SC-CCEEEEESCCHHHHHHTTCCEEEEE--CSSTTC
T ss_pred HHHHHHHHhCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC-CC-CEEEEECCchHHHHHHcCCEEeecc--CCCCCC
Confidence 3334444456655444332 23 3333333333333332 23 33 3456677788888888888766532 2222
Q ss_pred CcchH---HHHHHHHhccceEEEeChhhHHHH
Q psy8225 126 NQRQH---ILIHSIKVAECKAIIYGAELSEAL 154 (479)
Q Consensus 126 ~~~~~---~l~~~l~~~~~~~vi~~~~~~~~~ 154 (479)
.-++. ++...++..++++||++....+..
T Consensus 209 eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~ 240 (284)
T 3cx3_A 209 EPSPRQLTEIQEFVKTYKVKTIFTESNASSKV 240 (284)
T ss_dssp CCCSHHHHHHHHHHHHTTCCCEEECSSSCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCcHH
Confidence 23444 455567778899999987665444
No 127
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=24.35 E-value=56 Score=28.95 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcC
Q psy8225 79 NRIANFFKSKGLQRGDAVALFME 101 (479)
Q Consensus 79 ~~la~~L~~~gi~~gd~V~i~~~ 101 (479)
+.+...|+++|+++||.|.+.+.
T Consensus 25 ~~L~~~L~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 25 DRLASDLAALGVRPGGVLLVHAS 47 (286)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEec
Confidence 56778999999999999999876
No 128
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=24.32 E-value=56 Score=28.82 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCC
Q psy8225 79 NRIANFFKSKGLQRGDAVALFMEG 102 (479)
Q Consensus 79 ~~la~~L~~~gi~~gd~V~i~~~n 102 (479)
+.+...|+++|+++||.|.+.+.=
T Consensus 16 ~~L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 16 QSITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 468889999999999999998863
No 129
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=24.11 E-value=2.6e+02 Score=25.17 Aligned_cols=57 Identities=9% Similarity=-0.017 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC----cchHHHHHHHHhccceEEEeC
Q psy8225 90 LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN----QRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 90 i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 147 (479)
.++||.|.+..+..+-+.....++...|+.++.++.. ...+++...++. ++++|+..
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 4678988887766555544444455668777666432 456777776654 56777653
No 130
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=23.63 E-value=2.4e+02 Score=26.59 Aligned_cols=66 Identities=9% Similarity=0.050 Sum_probs=37.0
Q ss_pred HHHHHHcCCCCCCEEEEEc-CCchHHHHHH--------HHhhhcCceeeeecCC----cchHHHHHHHHh-ccceEEEeC
Q psy8225 82 ANFFKSKGLQRGDAVALFM-EGQPEYVCMW--------LGLSKIGVVAAFINTN----QRQHILIHSIKV-AECKAIIYG 147 (479)
Q Consensus 82 a~~L~~~gi~~gd~V~i~~-~n~~e~~~~~--------lA~~~~G~~~v~l~~~----~~~~~l~~~l~~-~~~~~vi~~ 147 (479)
...+... +++||.|.+.. +.-......+ -.+...|+.+..++.. ...+++...++. .++++|++.
T Consensus 105 ~~al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~ 183 (427)
T 3i16_A 105 GAALFGN-LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQ 183 (427)
T ss_dssp HHHHHHH-CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEE
T ss_pred HHHHHHH-hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEE
Confidence 3334433 57888877665 3222222111 1234557777666542 566777777764 467777775
Q ss_pred h
Q psy8225 148 A 148 (479)
Q Consensus 148 ~ 148 (479)
.
T Consensus 184 ~ 184 (427)
T 3i16_A 184 R 184 (427)
T ss_dssp C
T ss_pred c
Confidence 4
No 131
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=23.50 E-value=1.9e+02 Score=26.23 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=41.3
Q ss_pred HHHHc-CCCCC-CEEEEEcC-CchHHHHHHHHhhhcCceeeeecCCcch-HHHHHHHHhccceEEEeC
Q psy8225 84 FFKSK-GLQRG-DAVALFME-GQPEYVCMWLGLSKIGVVAAFINTNQRQ-HILIHSIKVAECKAIIYG 147 (479)
Q Consensus 84 ~L~~~-gi~~g-d~V~i~~~-n~~e~~~~~lA~~~~G~~~v~l~~~~~~-~~l~~~l~~~~~~~vi~~ 147 (479)
.|.+. ++++| ++|+|... -.+-.+++.+|-. .|+.++.+...... ++....++..+++.++..
T Consensus 157 ~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (364)
T 1gu7_A 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKL-LNFNSISVIRDRPNLDEVVASLKELGATQVITE 223 (364)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHH-HTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred HHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHH-CCCEEEEEecCccccHHHHHHHHhcCCeEEEec
Confidence 34443 79999 99999998 6667777777664 68765555322222 334455677888888754
No 132
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=23.37 E-value=1.2e+02 Score=26.88 Aligned_cols=99 Identities=7% Similarity=0.033 Sum_probs=58.6
Q ss_pred HHHHHhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecC--C
Q psy8225 52 LFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT--N 126 (479)
Q Consensus 52 ~l~~~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~--~ 126 (479)
+-+...+..|+.-.... -.+ ++.++.+.+-..+++. .+.++.+..+...+...++.-.|++-..+..- +++ .
T Consensus 119 I~~~L~~~dP~~a~~y~-~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~~--~~~~~e 195 (282)
T 3mfq_A 119 ASEELQKLLPAKAEMIQ-KNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQG--VSTDSE 195 (282)
T ss_dssp HHHHHTTTCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSSC--SSSCSC
T ss_pred HHHHHHHhChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEecccc--cCCCCC
Confidence 33334445555443322 234 4555555555555543 34445678888888888998888887776322 222 2
Q ss_pred cchHH---HHHHHHhccceEEEeChhhHHH
Q psy8225 127 QRQHI---LIHSIKVAECKAIIYGAELSEA 153 (479)
Q Consensus 127 ~~~~~---l~~~l~~~~~~~vi~~~~~~~~ 153 (479)
-++.+ +...++..++++||++....+.
T Consensus 196 ps~~~l~~l~~~ik~~~v~~if~e~~~~~~ 225 (282)
T 3mfq_A 196 VANSDMIETVNLIIDHNIKAIFTESTTNPE 225 (282)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEECBTTSCTH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCChH
Confidence 34444 4556677899999998765443
No 133
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=23.24 E-value=87 Score=27.84 Aligned_cols=98 Identities=9% Similarity=0.002 Sum_probs=56.2
Q ss_pred HHHHHHhhcCCCccccEEEEeh-hhHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCc
Q psy8225 51 PLFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSK--GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127 (479)
Q Consensus 51 ~~l~~~~~~~p~~~a~~~~~Ty-~l~~~~~~la~~L~~~--gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~ 127 (479)
.+-+...+..|+.-+... -.+ ++.++.+++-..+++. .+ ++ +..+...+...++.-.|++-..|..- ....-
T Consensus 147 ~I~~~L~~~dP~~a~~y~-~N~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yf~~~yGl~~~~~~~--~~~ep 221 (291)
T 1pq4_A 147 TIAKELAELDPDNRDQYE-ANLAAFLAELERLNQELGQILQPL-PQ-RKFIVFHPSWAYFARDYNLVQIPIEV--EGQEP 221 (291)
T ss_dssp HHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHTTC-SC-CEEEESSCCCHHHHHHTTCEEEESCB--TTBCC
T ss_pred HHHHHHHHHCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHhCC-CC-CEEEEECCchHHHHHHCCCEEeeccc--CCCCC
Confidence 333334445665544332 233 4444444444444433 23 23 55677888999998888887766432 23334
Q ss_pred chHHHH---HHHHhccceEEEeChhhHHH
Q psy8225 128 RQHILI---HSIKVAECKAIIYGAELSEA 153 (479)
Q Consensus 128 ~~~~l~---~~l~~~~~~~vi~~~~~~~~ 153 (479)
+++++. ..++..++++||++....+.
T Consensus 222 s~~~l~~l~~~ik~~~v~~If~e~~~~~~ 250 (291)
T 1pq4_A 222 SAQELKQLIDTAKENNLTMVFGETQFSTK 250 (291)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEETTSCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCChH
Confidence 555554 45667789999997665443
No 134
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=22.99 E-value=2e+02 Score=26.54 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=41.8
Q ss_pred CCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225 93 GDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 93 gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
++.|..... +-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 93 ~~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 148 (372)
T 1p5j_A 93 CAHFVCSSA-GNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGEL 148 (372)
T ss_dssp CCEEEECCS-SHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSC
T ss_pred CCEEEEeCC-CHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Confidence 344444443 55556666778899998888888777777788999999999998764
No 135
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=22.87 E-value=1.8e+02 Score=22.24 Aligned_cols=49 Identities=6% Similarity=0.033 Sum_probs=29.6
Q ss_pred CCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccce
Q psy8225 93 GDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECK 142 (479)
Q Consensus 93 gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 142 (479)
-|.|.++.| .....-++..|...|.-.+.+.+....+++....+..+..
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVE 118 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCE
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCE
Confidence 456666666 3444445555666776666666655566666666666555
No 136
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=22.83 E-value=2.7e+02 Score=24.95 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=39.2
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225 84 FFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY 146 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 146 (479)
.|.+.++++|++|+|....++-..++.+|. ..|+.++.+..+ .+.+ ..++..+++.++.
T Consensus 156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~-~~Ga~Vi~~~~~--~~~~-~~~~~lGa~~~~d 214 (339)
T 1rjw_A 156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDIG--DEKL-ELAKELGADLVVN 214 (339)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECSC--HHHH-HHHHHTTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEeCC--HHHH-HHHHHCCCCEEec
Confidence 455558999999999999667777777765 458766655543 3333 3445667776653
No 137
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=22.72 E-value=1.7e+02 Score=26.51 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC----cchHHHHHHHHhccceEEEeC
Q psy8225 91 QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN----QRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 91 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 147 (479)
++||.|.+..+..+.+.-....+...|+.++.++.. ...+++...++. ++++|+..
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEe
Confidence 578888877776555544443334468777666432 456677766653 56677654
No 138
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=22.61 E-value=2.4e+02 Score=22.43 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee--cCCcchHHH
Q psy8225 82 ANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI--NTNQRQHIL 132 (479)
Q Consensus 82 a~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l--~~~~~~~~l 132 (479)
+.+|.+.|+.+...+.+...+..+.+-++-=+++.|...+.| -+..+..++
T Consensus 89 ~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~Wl~~l~~~~~ 141 (161)
T 1oft_A 89 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAAR 141 (161)
T ss_dssp HHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEECCSSCCHHHH
T ss_pred HHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEECCCcCChHHH
Confidence 446666677776666666666666666666666666544433 233444443
No 139
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=22.42 E-value=2.1e+02 Score=26.05 Aligned_cols=50 Identities=6% Similarity=-0.062 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHhhhcCceeeeecCCc-chHHHHHHHHhccceEEEeChhh
Q psy8225 101 EGQPEYVCMWLGLSKIGVVAAFINTNQ-RQHILIHSIKVAECKAIIYGAEL 150 (479)
Q Consensus 101 ~n~~e~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~ 150 (479)
..+-.-..+.++|.+.|..++.+-|.. .+..-...++..++++++++...
T Consensus 86 SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~ 136 (352)
T 2zsj_A 86 STGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTF 136 (352)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSCH
T ss_pred CCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 444444556688889999888877765 55666778899999999998643
No 140
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=22.25 E-value=4e+02 Score=23.78 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecC----CcchHHHHHHHHhccceEEEeC
Q psy8225 90 LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 90 i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~----~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
.++||.|.+..+.-..+. .++...|+.++.++. ....+++...++..++++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 578999988877655443 234567776666543 3467888888887677887763
No 141
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=21.94 E-value=3.4e+02 Score=24.71 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC----cchHHHHHHHHhccceEEEeC
Q psy8225 90 LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN----QRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 90 i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 147 (479)
+++||.|.+..+...... ..-++...|+.++.++.. ...+++...++..++++|+..
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 143 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMV 143 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEE
Confidence 678999888876543311 233455667766665433 367788888876567777754
No 142
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=21.81 E-value=3.6e+02 Score=24.54 Aligned_cols=54 Identities=13% Similarity=-0.008 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhc---cceEEEeC
Q psy8225 90 LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA---ECKAIIYG 147 (479)
Q Consensus 90 i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~vi~~ 147 (479)
.++||.|.+..+....+. -++...|+.+++++. ...+++...++.. ++++|++.
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~ 180 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTD 180 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEe
Confidence 568898888877655443 345667888887764 5677888888765 57777764
No 143
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=21.65 E-value=2.9e+02 Score=25.09 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC-----cchHHHHHHHHhccceEEEe
Q psy8225 89 GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN-----QRQHILIHSIKVAECKAIIY 146 (479)
Q Consensus 89 gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~ 146 (479)
++++||.|.+..+...... .++...|+.++.++.. ...+++...++. +.++|+.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTY---YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 6889999888777655444 3455678776665432 356777776654 5666665
No 144
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=21.59 E-value=2e+02 Score=26.25 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHhhhcCceeeeecCCc-chHHHHHHHHhccceEEEeChh
Q psy8225 101 EGQPEYVCMWLGLSKIGVVAAFINTNQ-RQHILIHSIKVAECKAIIYGAE 149 (479)
Q Consensus 101 ~n~~e~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~ 149 (479)
..+-.-..+.++|.+.|..++.+-|.. .+..-...++..++++++++..
T Consensus 84 SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~ 133 (351)
T 3aey_A 84 STGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGN 133 (351)
T ss_dssp CSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESC
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 444444556688889999888877765 5566677889999999998764
No 145
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=21.58 E-value=4.3e+02 Score=23.53 Aligned_cols=62 Identities=8% Similarity=-0.025 Sum_probs=41.0
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 84 FFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
.+...++++|++|+|...-+.-.+++.+|...-..+++.++.. ++-..++++.+++.++...
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~---~~k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIS---SEKLALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTTCSEEEETT
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEech---HHHHHHHHHcCCeEEEeCC
Confidence 4455689999999999887777666666655433344445432 2334567788888888654
No 146
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=21.44 E-value=2.4e+02 Score=25.82 Aligned_cols=50 Identities=8% Similarity=-0.016 Sum_probs=37.4
Q ss_pred CCchHHHHHHHHhhhcCceeeeecCCc-chHHHHHHHHhccceEEEeChhh
Q psy8225 101 EGQPEYVCMWLGLSKIGVVAAFINTNQ-RQHILIHSIKVAECKAIIYGAEL 150 (479)
Q Consensus 101 ~n~~e~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~ 150 (479)
..+-.-..+.++|.+.|..++.+-|.. .+..-...++..++++++++...
T Consensus 92 SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~ 142 (360)
T 2d1f_A 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNF 142 (360)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSSCH
T ss_pred CCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 344444556688889999888887775 55666778899999999997643
No 147
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=21.24 E-value=3e+02 Score=24.94 Aligned_cols=57 Identities=11% Similarity=-0.011 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC----cchHHHHHHHHh-ccceEEEeC
Q psy8225 90 LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN----QRQHILIHSIKV-AECKAIIYG 147 (479)
Q Consensus 90 i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~-~~~~~vi~~ 147 (479)
+++||.|.+..+..+-.. ..-.+...|+.++.++.. ...+++...++. .++++|+..
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 141 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVC 141 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEe
Confidence 578998888776544332 112223457666555432 467888888864 366777654
No 148
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=21.06 E-value=2.7e+02 Score=25.41 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=41.7
Q ss_pred HHHHHcCCC-CCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 83 NFFKSKGLQ-RGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 83 ~~L~~~gi~-~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
..|.+.+++ +|++|+|...-.+-..++.+|- ..|+.++.+... .+.+....+..+++.++...
T Consensus 177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~~--~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVISTS--PSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESC--GGGHHHHHHTSCCSEEEETT
T ss_pred HHHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC--HHHHHHHHHhcCCceEEecc
Confidence 345566888 9999999998667777777765 468766555443 33444444577777776543
No 149
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=21.03 E-value=2.5e+02 Score=26.59 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=37.8
Q ss_pred cCCCCCCEEEEEcC-CchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeC
Q psy8225 88 KGLQRGDAVALFME-GQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 88 ~gi~~gd~V~i~~~-n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
.++++|++|+|... -.+-.+++.+|. ..|+.++.+.. +.+. ...++..+++.++..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak-~~Ga~vi~~~~--~~~~-~~~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFAL-AGGANPICVVS--SPQK-AEICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEES--SHHH-HHHHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHH-HcCCeEEEEEC--CHHH-HHHHHhhCCcEEEec
Confidence 47899999999998 555556655554 56887666653 3333 345577788877753
No 150
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=21.00 E-value=2.9e+02 Score=24.89 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225 84 FFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY 146 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 146 (479)
.|...++++|++|+|...-.+-..++.+|- ..|+.++.+..+ .+ -..+++..+++.++.
T Consensus 160 al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~-~~~~~~~lGa~~~~~ 218 (352)
T 1e3j_A 160 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAK-AYGAFVVCTARS--PR-RLEVAKNCGADVTLV 218 (352)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESC--HH-HHHHHHHTTCSEEEE
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEcCC--HH-HHHHHHHhCCCEEEc
Confidence 344558999999999998666777777765 458764444432 22 334556777777664
No 151
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=20.89 E-value=3.2e+02 Score=24.36 Aligned_cols=58 Identities=12% Similarity=-0.012 Sum_probs=38.6
Q ss_pred HHcCCCCCCEEEEEcC-CchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225 86 KSKGLQRGDAVALFME-GQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY 146 (479)
Q Consensus 86 ~~~gi~~gd~V~i~~~-n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 146 (479)
+..++++|++|.|... ..+-..++.++. ..|+.++.+.. +.+.+....+..+++.++.
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIAR-LKGCRVVGIAG--GAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEES--SHHHHHHHHHTTCCSEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHHcCCCEEEE
Confidence 3448999999999998 455555555554 67886665543 3444444447778877765
No 152
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=20.84 E-value=3.2e+02 Score=24.58 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHcCCCCCCEEEEEcCC-chHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225 84 FFKSKGLQRGDAVALFMEG-QPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY 146 (479)
Q Consensus 84 ~L~~~gi~~gd~V~i~~~n-~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 146 (479)
.|.+.++++|++|.|.... .+-..++.++....|+.++.+..+ .+.+ ..++..+++.++.
T Consensus 162 ~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~--~~~~-~~~~~~g~~~~~~ 222 (347)
T 1jvb_A 162 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR--EEAV-EAAKRAGADYVIN 222 (347)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS--HHHH-HHHHHHTCSEEEE
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCC--HHHH-HHHHHhCCCEEec
Confidence 4555689999999999998 677777776665438876655543 2332 3345566776664
No 153
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.77 E-value=2.4e+02 Score=22.23 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEeh------HHHHHHhcCCCCCCCCCCceeEEEecC
Q psy8225 260 HTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIG------EMCRYLLAVPEKPEDTQHSVKMMIGNG 332 (479)
Q Consensus 260 h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p------~~l~~l~~~~~~~~~~l~~lr~~~G~~ 332 (479)
|..|..+.-...-..|-.++... ...++.+.+.+.++++.++..+- ..+..+++..+.... ..+++++|+.
T Consensus 31 HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~--~~i~v~vGG~ 108 (161)
T 2yxb_A 31 HDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGA--DDIPVVLGGT 108 (161)
T ss_dssp CCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTC--TTSCEEEEEC
T ss_pred cHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCC--CCCEEEEeCC
Q ss_pred CChhhHHHHHH
Q psy8225 333 LRPQVWEPFQK 343 (479)
Q Consensus 333 l~~~~~~~~~~ 343 (479)
+..+....+++
T Consensus 109 ~~~~~~~~l~~ 119 (161)
T 2yxb_A 109 IPIPDLEPLRS 119 (161)
T ss_dssp CCHHHHHHHHH
T ss_pred CchhcHHHHHH
No 154
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=20.56 E-value=1.9e+02 Score=26.11 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=35.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCC----cchHHHHHHHHhccceEEEeC
Q psy8225 91 QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN----QRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 91 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 147 (479)
++||.|.+..+..+-+......+.+.|+.++.++.. ...+++...++. +.++|+..
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEE
Confidence 578888887777666655554455667777666543 356677666643 55666654
No 155
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=20.54 E-value=3.9e+02 Score=24.13 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=36.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecC----CcchHHHHHHHHhccceEEEeC
Q psy8225 90 LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 90 i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~----~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
+++||.|.+..+.-..+. ..-++...|+.++.++. ....+++...++..++++|+..
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 150 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLT 150 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 578999888877655542 22245566776666543 2567788887776466777653
No 156
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=20.35 E-value=2.5e+02 Score=25.69 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=39.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeC
Q psy8225 83 NFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYG 147 (479)
Q Consensus 83 ~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 147 (479)
..|.+.++++|++|+|.....+-..++.+|-. .|+.++.+..+. +.+ ..++..+++.++..
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~Vi~~~~~~--~~~-~~a~~lGa~~vi~~ 245 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTTSE--AKR-EAAKALGADEVVNS 245 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSG--GGH-HHHHHHTCSEEEET
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCH--HHH-HHHHHcCCcEEecc
Confidence 34555689999999999986667777777654 587655555432 222 23445677777653
No 157
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.34 E-value=3.2e+02 Score=22.46 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=41.4
Q ss_pred EEEEEcCC----chHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 95 AVALFMEG----QPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 95 ~V~i~~~n----~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
+|.+.... .+-..++...+-..|.-++.+....+.+++...++..++++|..+.
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 55555443 2444555555667899999999999999999999999999999764
No 158
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=20.23 E-value=4.5e+02 Score=24.79 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=43.9
Q ss_pred HHcC-CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225 86 KSKG-LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148 (479)
Q Consensus 86 ~~~g-i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 148 (479)
.+.| +++++.|..... +-.-..+.+++.+.|..++.+-|...+.+-...++..+++++++..
T Consensus 153 ~~~G~l~~g~tVV~aSs-GN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~ 215 (435)
T 1jbq_A 153 ERDGTLKPGDTIIEPTS-GNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215 (435)
T ss_dssp HHHTCSCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC
T ss_pred HHcCCCCCCCEEEEeCC-CHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecC
Confidence 3445 466776554433 3444556667779999888887776667777889999999999864
Done!