RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8225
(479 letters)
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 540 bits (1394), Expect = 0.0
Identities = 201/408 (49%), Positives = 270/408 (66%), Gaps = 40/408 (9%)
Query: 71 TF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
TF ++ ++SN++ANFF+++G + GD VALFME + E+V +WLGL+KIGV A IN+N R
Sbjct: 5 TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRL 64
Query: 130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE 189
L+H I V++ KA+I+ L + L + P
Sbjct: 65 ESLLHCITVSKAKALIF--NLLDPLLTQSSTEP--------------------------- 95
Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSD 249
P++D + DKL YIYTSGTTGLPKAAV+ H R +A Y G+ +
Sbjct: 96 --------PSQDDVNFR--DKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPE 145
Query: 250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
DVVY LPLYH+AGG++G+GQ LL GSTVVIR KFSASNFW DC+KYNCT+ QYIGE+CR
Sbjct: 146 DVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTIVQYIGEICR 205
Query: 310 YLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGK 369
YLLA P E+ +H+V++ +GNGLRPQ+WE F +RFG+ +I EFYGATEGN++L+N D
Sbjct: 206 YLLAQPPSEEEQKHNVRLAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVNIDNH 265
Query: 370 VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429
VGA G+ I YP+ LIK D +T E IR+ DGLCIPC+ EPG+L+G I ++
Sbjct: 266 VGACGFNSRILPSVYPIRLIKVDEDTGELIRDSDGLCIPCQPGEPGLLVGKIIQNDPLRR 325
Query: 430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
F+GY ++ A+ KKI R+V+ GD+AF +GD+L+ D+ Y YFKDRTGD
Sbjct: 326 FDGYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGD 373
Score = 76.7 bits (189), Expect = 5e-15
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 12 QIPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVT 71
++P VEG+AGMAAIVD E +DL + + + K+LP YARP F+R + EV TG +K T
Sbjct: 406 EVPGVEGRAGMAAIVDPERKVDLDRFSAVLAKSLPPYARPQFIRLLPEVDKTGTFKLQKT 465
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 512 bits (1322), Expect = e-178
Identities = 182/407 (44%), Positives = 239/407 (58%), Gaps = 24/407 (5%)
Query: 79 NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
NR A++ ++G+ +GD VAL ME +PEY+ WLGL+K+G V A +NT QR +L HS+ +
Sbjct: 73 NRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNL 132
Query: 139 AECKAIIYGAELSEALTEVKDSI-PGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
+ K +I G EL EA E + + L+ AG E+L +A +
Sbjct: 133 VDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDD-------PEGYEDLAAAAAGA 185
Query: 198 PTEDIKKNKPS-------DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDD 250
PT N S D YIYTSGTTGLPKAAVM+H+R + LT DD
Sbjct: 186 PTT----NPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDD 241
Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRY 310
V+Y LPLYH GG + L G+T+ +R KFSAS FW D +Y T QYIGE+CRY
Sbjct: 242 VLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRY 301
Query: 311 LLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKV 370
LL P KP D H +++MIGNGLRP +W+ FQ+RFG+ RI EFY A+EGN +N
Sbjct: 302 LLNQPPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVFNFD 361
Query: 371 GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF 430
G VG +P +P ++K D +T EP+R+ DG CI K E G+LIG I + F
Sbjct: 362 GTVGRVPLWLA--HPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDR---GPF 416
Query: 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+GY D +ASEKKILR+V+ GDA FNTGD++ D F + F DR GD
Sbjct: 417 DGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGD 463
Score = 70.7 bits (174), Expect = 6e-13
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 12 QIPNVEGKAGMAAIV-DTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKY 68
++P +G+AGMAAIV DL L + + + LP YA PLFVR + E+ TG +KY
Sbjct: 496 EVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKY 553
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 433 bits (1116), Expect = e-149
Identities = 161/405 (39%), Positives = 218/405 (53%), Gaps = 70/405 (17%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+ +NR A+ ++ G+++GD VAL ME +PEY+ WL L+K+G VAA INT QR
Sbjct: 8 EFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQR---- 63
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
G L+ + A+ +
Sbjct: 64 --------------GEVLAHCINVSD------------------ARAVIVDPAF------ 85
Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
YIYTSGTTGLPKAA+M+H R + L DDV+
Sbjct: 86 --------------------YIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVL 125
Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
Y LPLYH+ +G L G+++ +R KFSAS FW D +Y T QY+GE+CRYLL
Sbjct: 126 YLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLL 185
Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
PEKP+D H ++ +IGNGLRP +W+ F++RFG+ RI EFYG+TEGN +N K GA
Sbjct: 186 NQPEKPDDRDHPLRKIIGNGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKPGA 245
Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
VG +P + ++K D ET EPIR+ +G CI E G+L+G I + F+G
Sbjct: 246 VGRLPP-----AAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNP---FDG 297
Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
Y D +A+EKKILR+V+ GDA FNTGD++ +D F YFYF DR GD
Sbjct: 298 YTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGD 342
Score = 70.0 bits (172), Expect = 7e-13
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 12 QIPNVEGKAGMAAIVDTEN-SLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKY 68
++P EG+AGMAA+ + D + + + + LP YARPLF+R + TG +KY
Sbjct: 375 EVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLRVQAAMETTGTFKY 432
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 424 bits (1091), Expect = e-144
Identities = 177/416 (42%), Positives = 247/416 (59%), Gaps = 17/416 (4%)
Query: 69 TVTFQ-VEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
TVT+ V+ SN++A + GL+ GD VAL + +P ++ +WLGL+K+G AF+NTN
Sbjct: 3 TVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTN 62
Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLPSTT 184
R L+H + + ++ EL EA+ E+ ++ G+ ++ P
Sbjct: 63 IRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTSPP-----EGVI 117
Query: 185 LLDEELPEVSAKSPTEDIKKN-KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ 243
L ++ S + ++ YIYTSGTTGLPKAA ++H+R + SG
Sbjct: 118 SLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQC--SGMLS 175
Query: 244 -TGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
G+T+DDVVYTTLPLYH++G LLGI C+ G+T+V++ KFSAS FW DC KYN TV Q
Sbjct: 176 LCGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQ 235
Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNAN 362
YIGE+ RYL P+ D H V++ IGNGLRP VW F +RFG + E Y +TEGN
Sbjct: 236 YIGELLRYLCNQPQSDNDRDHKVRLAIGNGLRPDVWREFLRRFGPIHVWETYASTEGNIG 295
Query: 363 LMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK 422
+N G+VGAVG + P LIK D E EP+R+ G CIP EPG+LI I
Sbjct: 296 FINYTGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKIT 355
Query: 423 ESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
++S F GYA ++ +EKK+LR+V+ GD FNTGD+L++D+ + YF DRTGD
Sbjct: 356 ---SQSPFLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGD 408
Score = 53.9 bits (130), Expect = 1e-07
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 13 IPNVEGKAGMAAIVDTEN-SLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVT 71
+P EG+AGMAA++ DL++L +++ LP YARP F+R + +TG +K
Sbjct: 442 VPGHEGRAGMAAVILKPGTEFDLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQKV 501
Query: 72 FQVED 76
VE+
Sbjct: 502 RLVEE 506
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 285 bits (731), Expect = 2e-91
Identities = 143/419 (34%), Positives = 195/419 (46%), Gaps = 71/419 (16%)
Query: 69 TVTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
T T+ + D R A++ + +Q GD VA+ E+V +WL L IG V AFIN N
Sbjct: 5 TWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYN 64
Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
LIH +K++ K +I V P +Y +G
Sbjct: 65 LSGDPLIHCLKISGAKFVI-----------VDPDDPAALIYTSG---------------- 97
Query: 187 DEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
TTGLPK ++ R + + + L
Sbjct: 98 --------------------------------TTGLPKGCAISWRRTLVTSNPLSHDLNL 125
Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
D YT +PLYH LG+ CL G T+ + KFSAS FWKD T+ QY+GE
Sbjct: 126 QFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGE 185
Query: 307 MCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA 366
+CRYLLA P P D H V++ GNGLRP +WE F++RF + I EFY ATEG N
Sbjct: 186 LCRYLLATPPSPYDRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFAFTNH 245
Query: 367 D------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIR-NKDGLCIPCKAEEPGILIG 419
+ G +G G I + V L+K DPET PIR K G C+ EPG ++G
Sbjct: 246 NVGPFTAGAIGFSGLIRRWFLEN-QVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLG 304
Query: 420 MIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
++ E F GY ++ A+E K+LR+V+ GD + TGD+L +D +YF DR GD
Sbjct: 305 RVRFKNREL-FQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGD 362
Score = 45.5 bits (108), Expect = 4e-05
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 13 IPNVEGKAGMAAIVDTENSLD-----LKQLISGMQKTLPTYARPLFVRTIREVPMTGAYK 67
+P +G+AG AAI E+S L +K LP+YA PLF+R EV TG +K
Sbjct: 396 VPGYDGRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYAVPLFLRLTEEVATTGNHK 455
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 228 bits (583), Expect = 9e-69
Identities = 122/459 (26%), Positives = 190/459 (41%), Gaps = 54/459 (11%)
Query: 38 ISGMQKTLPTYARPLFVRTIREVPMTGAYKY-----TVTF-QVEDHSNRIANFFKSKGLQ 91
M+ T L R R P A + +T+ +++ +NR+A ++ G++
Sbjct: 2 NRLMRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVK 61
Query: 92 RGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS 151
GD VA+ + PE++ +L + G VA +N L + + A K +I AE +
Sbjct: 62 PGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA 121
Query: 152 EALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKL 211
L V +++P + + L+ E P D + P D
Sbjct: 122 ALLEAVAEALPVVLVVLLVG-----DADDRLPITLEALAAE--GPGPDADARPVDPDDLA 174
Query: 212 AYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG 269
+YTSGTTGLPK V+TH + A I+ GLT DDVV + LPL+H G ++G+
Sbjct: 175 FLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLL 234
Query: 270 QCLLGGSTVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK-PEDTQHSVK 326
LLGG T+V+ S F KY TV + R LL PEK +D S++
Sbjct: 235 APLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLR 294
Query: 327 MMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEG-----NANLMNADGKVGAVGYIPYI 379
+++ G L P++ E F++RFG I E YG TE + K G+VG
Sbjct: 295 LVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVG----- 349
Query: 380 AIPFYPVGLIKCDPETSEPIRNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYADKKA 438
P V + DP+ E + + G + + R + GY ++
Sbjct: 350 -RPLPGVEVRIVDPDGGEVLPGEVGEIWV-----------------RGPNVMKGYWNRPE 391
Query: 439 SEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ + D TGD+ D+ Y Y R D
Sbjct: 392 ATAEAFDE-----DGWLRTGDLGYVDEDGYLYIVGRLKD 425
Score = 32.4 bits (74), Expect = 0.58
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 18 GKAGMAAIV---DTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYK 67
G+ +A +V + L ++L + ++K L Y P V + E+P T + K
Sbjct: 463 GERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGK 515
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 219 bits (561), Expect = 8e-67
Identities = 99/411 (24%), Positives = 158/411 (38%), Gaps = 37/411 (9%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
++++ +NR+A ++ G+ GD VA+ + PE+V L + K G ++ + L
Sbjct: 4 ELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAERL 63
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
+ ++ +E K +I EL L EV + L +
Sbjct: 64 AYILEDSEAKVLITDDELLPKLLEVLLKLL--------VLLALIIVGDDGEGLDLLDDEL 115
Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
++ S P D IYTSGTTG PK ++TH + +A + GLT D V
Sbjct: 116 LAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRV 175
Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFS--ASNFWKDCIKYNCTVAQYIGEMCRY 310
LP H G + I LL G T+V+ KF+ + KY TV + + R
Sbjct: 176 LLLLP-LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRL 234
Query: 311 LLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADG 368
LL PE+ + S+++++ G L P++ ++RFG + YG TE
Sbjct: 235 LLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLP 294
Query: 369 KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAE 427
V I P V + D E P E G + I R
Sbjct: 295 GDPEVKPGS-IGRPLPGVEVKVLDEEG-----------EPVPPGEVGELCI------RGP 336
Query: 428 SHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
GY D + + ++ + G + TGD+ D+ Y R D
Sbjct: 337 GVARGYLNDPELTAERFV----EDGWGMYRTGDLGRWDEDGYLEILGRKDD 383
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 195 bits (497), Expect = 2e-57
Identities = 100/413 (24%), Positives = 160/413 (38%), Gaps = 91/413 (22%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
T+ ++ + NR+A + G++ GD VAL ++ PE++ W L+K+G VA INT
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
R L H + + + I+ + LY +GT P+ +L
Sbjct: 63 RGEELAHILDHSGARLIVV------DTAAI--------LYTSGTTGPPKGVLLTH----- 103
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
A + + A
Sbjct: 104 ------------------------AQLLFAA---------------RLAARLLGL----R 120
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
DDV+ T LPL+H + LL G+T+V+ +FSAS FW K+ TV +G M
Sbjct: 121 PDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAM 180
Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
L+ P P+D H ++ + G L +W F++RFG+ ++ E YG TE ++
Sbjct: 181 AAILMKQPPSPDDRDHPLRFVFGAPLPAAIWPAFEERFGV-KLVEGYGMTETGVPIIAPG 239
Query: 368 --GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR 425
G+ G P V ++ D + E G L+ ++ R
Sbjct: 240 DPAPPGSCGRPR----PGVEVRIV--DEDG-----------REVPPGEVGELV--VRPRR 280
Query: 426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDA 478
+ F GY + K RN + F+TGD +D+ + YF DR DA
Sbjct: 281 PWAMFKGYYGMPEATAKAWRNGW------FHTGDRGRRDEDGFLYFVDRKKDA 327
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 185 bits (472), Expect = 1e-52
Identities = 117/409 (28%), Positives = 189/409 (46%), Gaps = 49/409 (11%)
Query: 79 NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
A+ + G++RGD VAL + E++ ++LG + +G +A INT R L H ++
Sbjct: 57 AAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRN 116
Query: 139 AECKAIIYGAELSEALTEVKD---SIPGISLY-AAGTRRKPQAKVLPSTTLLDEELPEVS 194
+ + ++ A L AL +P + L A + P ST LP +
Sbjct: 117 SGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAG---WSTA----PLPPLD 169
Query: 195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
A +P ++ P D A +YTSGTTG K H + + + + +DDV+YT
Sbjct: 170 APAPAAAVQ---PGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYT 226
Query: 255 TLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
TLPL+HT L Q LL G+T V+ +FSAS FW ++ TV +G M LL+
Sbjct: 227 TLPLFHT-NALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQ 285
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNA--NLMNADGKVGA 372
P + D H V++ +G G+ + F++RFG+D + + YG+TE N + + + G+
Sbjct: 286 PARESDRAHRVRVALGPGVPAALHAAFRERFGVDLL-DGYGSTETNFVIAVTHGSQRPGS 344
Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF-- 430
+G + P + ++ +P EPG L+ RA+ F
Sbjct: 345 MGRLA---------------PGFEARVVDEHDQELP--DGEPGELL-----LRADEPFAF 382
Query: 431 -NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDA 478
GY + RN++ F+TGD +++D +F F DR DA
Sbjct: 383 ATGYFGMPEKTVEAWRNLW------FHTGDRVVRDADGWFRFVDRIKDA 425
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 157 bits (399), Expect = 2e-42
Identities = 102/391 (26%), Positives = 173/391 (44%), Gaps = 51/391 (13%)
Query: 96 VALFMEGQPEYVCMWLGLSKI-GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEAL 154
V + ++ PE+ + LG + + G+V +N +R L I A+C+ ++ + +E L
Sbjct: 57 VGVLLDNTPEFS-LLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELL 115
Query: 155 TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL-PEVSAKSPTEDIKKNKPSDKLAY 213
+ + I++ + L E + P D
Sbjct: 116 DGLDPGVRVINVDSP-----------AWADELAAHRDAEPPFRVAD-------PDDLFML 157
Query: 214 IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL 273
I+TSGT+G PKA TH + + + GL DDV Y ++PL+H+ + G L
Sbjct: 158 IFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALA 217
Query: 274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGL 333
G+++ +R KFSAS F D +Y T A Y+G+ Y+LA PE+P+D + ++++ GN
Sbjct: 218 AGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEG 277
Query: 334 RPQVWEPFQKRFGLDRICEFYGATEGNANLMNA-DGKVGAVGYI-PYIAIPFYPVGLIKC 391
P F +RFG + + +G+TEG + D GA+G + P +AI
Sbjct: 278 APGDIARFARRFGC-VVVDGFGSTEGGVAITRTPDTPPGALGPLPPGVAI---------V 327
Query: 392 DPETSEPIRNKDGLCIPCKAEEPGIL-----IGMIKESRAESHFNGYADKKASEKKILRN 446
DP+T C P + + +L IG + + F GY + ++ + +R
Sbjct: 328 DPDTGTE-------CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR- 379
Query: 447 VYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ +GD+ +D Y YF R GD
Sbjct: 380 -----GGVYWSGDLAYRDADGYAYFAGRLGD 405
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 149 bits (379), Expect = 1e-39
Identities = 104/390 (26%), Positives = 174/390 (44%), Gaps = 48/390 (12%)
Query: 96 VALFMEGQPEYVCMWLGLSKI-GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEAL 154
V + + PE + WL + + G V +NT +R L I+ A+C+ ++ AE L
Sbjct: 55 VGVLLGNTPEML-FWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLL 113
Query: 155 TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI 214
+ +PG+ + T + + A +P ++ D I
Sbjct: 114 DGL--DLPGVRVLDVDTPAYAEL------------VAAAGALTPHREVD---AMDPFMLI 156
Query: 215 YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG 274
+TSGTTG PKA +H R F + + GLT DDV Y ++PL+H+ + G +
Sbjct: 157 FTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVAS 216
Query: 275 GSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLR 334
G+ V + +KFSAS F D +Y T Y+G+ Y+LA PE+P+D + +++ GN
Sbjct: 217 GAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEAS 276
Query: 335 PQVWEPFQKRFGLDRICEFYGATEGNANLMNADGK-VGAVGYIPYIAIPFYPVGLIKCDP 393
P+ F +RFG ++ + YG++EG ++ G G++G G+ +P
Sbjct: 277 PRDIAEFSRRFGC-QVEDGYGSSEGAVIVVREPGTPPGSIGR------GA--PGVAIYNP 327
Query: 394 ETSEPIRNKDGLCIPCKAEEPGIL------IGMIKESRAESHFNGYADKKASEKKILRNV 447
ET C + + G L IG + + F GY + + + +R
Sbjct: 328 ETLTE-------CAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR-- 378
Query: 448 YSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
HG + +GD+ +D + YF RT D
Sbjct: 379 --HGM--YWSGDLAYRDADGWIYFAGRTAD 404
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 143 bits (362), Expect = 2e-37
Identities = 115/416 (27%), Positives = 169/416 (40%), Gaps = 52/416 (12%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
++ + NR AN F S G+++GD VAL ++ PE++ W GL+KIG + IN +
Sbjct: 42 ELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR--- 98
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
E I+ ++ S +T + +Y + L L LP
Sbjct: 99 ------EESAWILQNSQASLLVTSAQ----FYPMYRQIQQEDATP--LRHICLTRVALPA 146
Query: 193 VSAKSPTEDIKKNKP----------SDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGR 241
S +K +P +D A I +TSGTT PK V+TH F
Sbjct: 147 DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA 206
Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA 301
+Q L DDV T +P +H G+T V+ K+SA FW KY T+
Sbjct: 207 WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATIT 266
Query: 302 QYIGEMCRYLLAVPEKPEDTQHSVK-MMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGN 360
+ I M R L+ P D QH ++ +M L Q + F++RFG+ R+ YG TE
Sbjct: 267 ECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGV-RLLTSYGMTE-- 323
Query: 361 ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIG- 419
VG +G P + +G E IR+ +P G IG
Sbjct: 324 -------TIVGIIGDRPGDKRRWPSIGRPGFCYEAE--IRDDHNRPLP-----AGE-IGE 368
Query: 420 -MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
IK ++ F Y + K+L D +TGD D+ +FYF DR
Sbjct: 369 ICIKGVPGKTIFKEYYLDPKATAKVLE-----ADGWLHTGDTGYVDEEGFFYFVDR 419
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 138 bits (351), Expect = 4e-37
Identities = 76/273 (27%), Positives = 114/273 (41%), Gaps = 32/273 (11%)
Query: 211 LAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG 269
A+I YTSGTTG PK V++H + A + GLT DV+ + LPL+H GG G+
Sbjct: 2 PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLL 61
Query: 270 QCLLGGSTVVIRSKFS-ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMM 328
LL G TVV+ F +F + +Y TV + + L E S++++
Sbjct: 62 GALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLL 121
Query: 329 IGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNAN-LMNADGKVGAVGYIPYIAIPFYP 385
I G L P++ E F++R G I E YG TE + N D ++ G + +P
Sbjct: 122 ISGGEPLSPELLERFEERPGA-PILEGYGLTETSVVTSTNPDSELKKPGTVG-RPVPGVE 179
Query: 386 VGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKIL 444
V ++ D E P E G +++ R GY +
Sbjct: 180 VRVV--DEEGK-----------PLPPGEVGELVV------RGPWVMKGYWNNPPETTAAA 220
Query: 445 RNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
D + TGD+ D+ Y Y R+ D
Sbjct: 221 T-----EDGWYRTGDLGYLDEEGYLYITGRSKD 248
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 137 bits (347), Expect = 2e-35
Identities = 108/431 (25%), Positives = 175/431 (40%), Gaps = 68/431 (15%)
Query: 67 KYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT 125
+TF + + R+A + GL++GD VAL E+ ++LG G + + N
Sbjct: 8 GTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANP 67
Query: 126 NQRQHILIHSIKVAECKAII-YGAEL---SEALTEVKDSIPGISLYAAGTRRKPQAKVLP 181
+ L H +K+++ K I EL EA E+ + I L +A +L
Sbjct: 68 SYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLE 127
Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH---VRAMFMA 237
++E +D A + Y+SGTTGLPK +++H + +
Sbjct: 128 PRLGAEDEFRPTPLIDGKDDT---------AALLYSSGTTGLPKGVMLSHKNIIANLSQV 178
Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
+S+DVV T LP YH A GL LL G+TV+I KF + F K KY
Sbjct: 179 QDTLKGNPDSSNDVVLTFLPFYH-AYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYK 237
Query: 298 CTVAQ---YIGEMCRYLLAVPEKPEDTQH---SVKMM--IGNGLRPQVWEPFQKRFGLDR 349
T I +A+ + P ++ S++++ L ++ E +KRF
Sbjct: 238 VTSLFLVPPI------AVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTT 291
Query: 350 ICEFYGATE--GNANLMNA-DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG- 404
I + YG TE L D K G+VG + +P ++ D + + + N+ G
Sbjct: 292 IKQGYGMTETGPATTLTPPGDEKPGSVGRL----VPNVEAKIV--DEDGGKSLGPNERGE 345
Query: 405 LCIPCKAEEPGILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIK 463
LC+ + GY + +A+++ I D +TGDI
Sbjct: 346 LCV-----------------KGPQIMKGYLNNPEATKETIDE------DGWLHTGDIGYF 382
Query: 464 DKFQYFYFKDR 474
D+ FY DR
Sbjct: 383 DEDGNFYIVDR 393
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 131 bits (332), Expect = 3e-33
Identities = 96/429 (22%), Positives = 160/429 (37%), Gaps = 68/429 (15%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+T+ + R+AN K G +GD VA++M PE V L ++IG + A ++
Sbjct: 40 ELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGL 99
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEV---KDSIPGISLYAAGTRRKPQAKVLPSTT 184
+ I K +I E+ +D+ +S R
Sbjct: 100 SAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG---------L 150
Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH----VRAMFMAISG 240
DE + + S K E + + P L +YTSGTTG PK V +H V A
Sbjct: 151 WYDEAVEKASEKFEFEPLPADDP---LFLLYTSGTTGKPKGIVHSHGGYLVEHRLTA--- 204
Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI---RSKFSASNFWKDCIKYN 297
++ L D + + G + L G+T V+ R +S W+ KY
Sbjct: 205 KFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYK 264
Query: 298 ----CTVAQYIGEMCRYLLAVPE-KPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRI 350
T ++ R L+ + +P D S++++ G L P+ +E F G+ I
Sbjct: 265 VTIFGTSPTFL----RRLMKLGLGEPYDLS-SLRVLGSAGEPLNPEAFEWFYSALGV-WI 318
Query: 351 CEFYGATE-GNANLMNA-DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIP 408
+ YG TE G + K G+ G + +P Y V + D E + L +
Sbjct: 319 LDIYGQTETGMGFIAGRPPVKNGSSG----LPLPGYAVRRV--DDEGNPVPPGVGELVV- 371
Query: 409 CKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQY 468
+ PG+ + + D + ++ Y GD A +D+ Y
Sbjct: 372 -RLPWPGMALTY------------WNDPERYKEAYFGRWYRTGDWAE-------RDEDGY 411
Query: 469 FYFKDRTGD 477
F+ R+ D
Sbjct: 412 FWLHGRSDD 420
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 129 bits (326), Expect = 1e-32
Identities = 104/440 (23%), Positives = 172/440 (39%), Gaps = 90/440 (20%)
Query: 52 LFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV 107
L R R P A + +T+ ++++ S+R A + + G+++GD VAL + P++
Sbjct: 4 LLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFP 63
Query: 108 CMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLY 167
+ G+ K G V +N L H + + K +I +AL
Sbjct: 64 IAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALAS----------- 112
Query: 168 AAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAV 227
+P + P D YT GTTG+PK A+
Sbjct: 113 ----------------------------GAPLPLPVELSPDDLAVLQYTGGTTGVPKGAM 144
Query: 228 MTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYH----TAGGLLGIGQCLLGGSTVVIR 281
+TH + A I+ + +D T LPL+H T LLG L G+T V+
Sbjct: 145 LTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLG----LRLGATNVLV 200
Query: 282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWE 339
F N K+ +Y T+ + + LL PE + S+++ I G L +V E
Sbjct: 201 PNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAE 260
Query: 340 PFQKRFGLDRICEFYGATEGN----ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPET 395
F+++ G + E YG TE + N ++ + K G++G + +P V + D E
Sbjct: 261 RFEEKTGA-PLVEGYGLTETSPVTTVNPLDGERKPGSIG----LPLPGTEVKI--VDDEG 313
Query: 396 SEPIRNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA 454
+E + G L + R GY ++ ++L + +
Sbjct: 314 NELPPGEVGELVV-----------------RGPQVMKGYWNRPEETAEVLTDGW------ 350
Query: 455 FNTGDILIKDKFQYFYFKDR 474
TGDI D+ YFY DR
Sbjct: 351 LRTGDIGYMDEDGYFYIVDR 370
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 128 bits (325), Expect = 3e-32
Identities = 103/432 (23%), Positives = 170/432 (39%), Gaps = 62/432 (14%)
Query: 67 KYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT 125
T+ ++++ NR+AN ++ G+++GD VA+F EY+ + + KIG V IN
Sbjct: 29 GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINI 88
Query: 126 ----NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS---LYAAGTRRKPQAK 178
+ +IL AE + ++ +E L + +P + + G +
Sbjct: 89 RLKPEEIAYILND----AEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPE 144
Query: 179 VLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF-MA 237
V LL A S T D +D A +YTSGTTG PK V++H R +F +
Sbjct: 145 VGEYEELLA-------AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH-RNLFLHS 196
Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
++ L+ DDV +P++H L + G V+ R F N
Sbjct: 197 LAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRR-FDPENLLDLIETER 255
Query: 298 CTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355
T + + + LL P S++++I G L P + F+++FG+D + + YG
Sbjct: 256 VTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGID-LVQGYG 314
Query: 356 ATEG---------NANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC 406
TE L K + G +P ++ D + E
Sbjct: 315 MTETSPVVSVLPPEDQLPGQWTKRRSAG----RPLPGVEARIV--DDDGDE--------- 359
Query: 407 IPCKAEEPGILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDK 465
+P E G +I R GY +A+ + I + H TGD+ D+
Sbjct: 360 LPPDGGEVGEII-----VRGPWLMQGYWNRPEATAETI-DGGWLH------TGDVGYIDE 407
Query: 466 FQYFYFKDRTGD 477
Y Y DR D
Sbjct: 408 DGYLYITDRIKD 419
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 118 bits (297), Expect = 5e-29
Identities = 106/405 (26%), Positives = 160/405 (39%), Gaps = 88/405 (21%)
Query: 76 DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
+ +R+A + KG+++GD VAL+M+ P++V + + + G V +N R
Sbjct: 9 ELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR------- 61
Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
AEL L + A+VL ++ EL
Sbjct: 62 -----------EAELEHILNDS------------------GARVL----IVGSEL----- 83
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
D +A I YTSGTTGLPK + TH + A + +GLT D V+
Sbjct: 84 -------------DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLA 130
Query: 255 TLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
LPL+H AG + + G+T+V+ +++ + +Y T I M LLA
Sbjct: 131 FLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAH 190
Query: 315 PEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNA-NLMNAD--GK 369
P + S+K++ G G L P V E + GL E YG TE + N K
Sbjct: 191 PRFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYE-EGYGLTETHTCTHFNPPDRPK 249
Query: 370 VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429
+G IP + DPET E + EE I++ R
Sbjct: 250 PQCLG------IPVFGTDARVIDPETGEEL----PP-----GEEGEIVV------RGPQV 288
Query: 430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
F GY ++ + + G F TGD+ D+ YF+F DR
Sbjct: 289 FKGYWNRPEATAESFI--ELDGKRFFRTGDLGYIDEEGYFFFLDR 331
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 109 bits (276), Expect = 1e-26
Identities = 69/272 (25%), Positives = 112/272 (41%), Gaps = 39/272 (14%)
Query: 214 IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL 273
+YTSGTTG PK ++TH + A++ L+ DV PLYH AGGL +
Sbjct: 7 LYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPALAA 66
Query: 274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG- 332
GG TVV+ KF ++ T + M + LL +P+ S++++I
Sbjct: 67 GG-TVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAA 125
Query: 333 -LRPQVWEPFQKRFGLDRICEFYGATEGNANLM-----NADGKVGAVGYIPYIAIPFYPV 386
+ ++ + FG + YG TE + K+G+VG +P
Sbjct: 126 PMPAELKRAMIEWFG-PVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGR----PVPG--- 177
Query: 387 GLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKILR 445
++ I ++DG E G I++ R + GY ++ + + LR
Sbjct: 178 VEVR--------IVDEDGR--ELPPGEVGEIVV------RGPAVMAGYWNRPEATAEALR 221
Query: 446 NVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ + H TGD+ D+ Y Y DR D
Sbjct: 222 DGWLH------TGDLGYLDEDGYLYIVDRKKD 247
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 108 bits (272), Expect = 2e-25
Identities = 104/429 (24%), Positives = 180/429 (41%), Gaps = 70/429 (16%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-- 125
++T+ ++++ NR N + G++R + V L + PE+ + G KIG V INT
Sbjct: 30 SLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLL 89
Query: 126 --NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG----ISLYAAGTRRKPQAKV 179
+ ++ L S + ++ EL E L P I + AG
Sbjct: 90 TPDDYRYYLNDS----RARVLVISEELWEVLKPALQKDPHLRHVIVVGGAG------PGA 139
Query: 180 LPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS 239
L L+ E+ A + + D D ++Y+SG+TG PK V H + A +
Sbjct: 140 LSYAQLIATAAEELEAAATSAD-------DMAFWLYSSGSTGRPKGVVHLHHDMLVTAEA 192
Query: 240 -GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL-----GGSTVVIRSKFSASNFWKDC 293
+ G+T DDVV++ L+ G+G L G +TV++ + + +
Sbjct: 193 YAKNVLGITEDDVVFSAAKLFFA----YGLGNGLYFPLSVGATTVLMPERPTPDAVFATI 248
Query: 294 IKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRIC 351
+Y TV + + +LA PEKPE S+++ + G L ++ +++ FGL+ I
Sbjct: 249 ERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLE-IL 307
Query: 352 EFYGATE-GNANLMNADGKV--GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIP 408
+ G+TE + L N G V G G +P Y V L+ D + E
Sbjct: 308 DGIGSTEMLHIFLSNRPGAVKYGTSGK----PVPGYEVKLV--DEDGEE----------- 350
Query: 409 CKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQY 468
E G L R +S GY +++ ++ G+ TGD +D+ Y
Sbjct: 351 VADGEIGELW-----VRGDSSAAGYWNRREKTRETF-----VGE-WTRTGDKYYRDEDGY 399
Query: 469 FYFKDRTGD 477
+++ R+ D
Sbjct: 400 YWYCGRSDD 408
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 103 bits (259), Expect = 1e-23
Identities = 111/442 (25%), Positives = 179/442 (40%), Gaps = 69/442 (15%)
Query: 66 YKYTVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
Y +++ ++ + + R+A + + + G+++GD V L+M+ P++V + + + V +
Sbjct: 32 YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPV 91
Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEAL--------------TEVKDSIP---GISL 166
N R+ L H + + + I G+EL+ + + D +P I++
Sbjct: 92 NPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAV 151
Query: 167 YA-AGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPK 224
A QA E L A P D LA + YTSGTTG+PK
Sbjct: 152 PAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHT-----AGPDDLAVLPYTSGTTGVPK 206
Query: 225 AAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKF 284
+ TH M A+ + T + VV LPL+H G + + + G+TVV+ +
Sbjct: 207 GCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR- 265
Query: 285 SASNFWK-----DCI-KYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLR-PQ- 336
W I +Y T I M LA P E S++ + G G P+
Sbjct: 266 -----WDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEA 320
Query: 337 VWEPFQKRFGLDRICEFYGATEGNA-NLMN--ADGKVGAVGYIPYIAIPFYPVGLIKCDP 393
V E ++ GLD E YG TE A N K+ +G IP + V DP
Sbjct: 321 VAERLKELTGLD-YVEGYGLTETMAQTHSNPPDRPKLQCLG------IPTFGVDARVIDP 373
Query: 394 ETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGD 452
ET E +P E I++ F GY ++ +A+ + + G
Sbjct: 374 ETLEE--------LPP-GEVGEIVV------HGPQVFKGYWNRPEATAEAF---IEIDGK 415
Query: 453 AAFNTGDILIKDKFQYFYFKDR 474
F TGD+ D+ YF+ DR
Sbjct: 416 RFFRTGDLGRMDEEGYFFITDR 437
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 103 bits (259), Expect = 1e-23
Identities = 114/434 (26%), Positives = 166/434 (38%), Gaps = 70/434 (16%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R AN S G+ GD VA + PE G G+ IN + ++ A
Sbjct: 70 RTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGIANP-INPLLEPEQIAELLRAA 128
Query: 140 ECKAIIY-----GAELSEALTEVKDSIPGI----------------SLYAAGTRRKPQAK 178
K ++ G ++ + + EV ++P + L RRK A+
Sbjct: 129 GAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHAR 188
Query: 179 VLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI 238
+L L + P S P D AY +T GTTG+PK A TH + A
Sbjct: 189 ILDFDAELARQ-PGDRLFSGR----PIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAW 243
Query: 239 SGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG-QCLLGGSTVVI------RSKFSASNFWK 291
G GL D V+ LPL+H LL G L G+ VV+ R +NFWK
Sbjct: 244 LGALLLGLGPGDTVFCGLPLFHV-NALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWK 302
Query: 292 DCIKYNCTVAQYIGEMCRY--LLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGL 347
+Y G Y LL VP D S++ + L +V+ F+ G+
Sbjct: 303 IVERYRINF--LSGVPTVYAALLQVPVDGHDIS-SLRYALCGAAPLPVEVFRRFEAATGV 359
Query: 348 DRICEFYGATEGN-ANLMN-ADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKD 403
RI E YG TE + +N DG ++G+VG + +P+ V ++ D
Sbjct: 360 -RIVEGYGLTEATCVSSVNPPDGERRIGSVG----LRLPYQRVRVVILDDA--------G 406
Query: 404 GLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIK 463
C +E G+L + F+GY + A K + D NTGD+
Sbjct: 407 RYLRDCAVDEVGVLC-----IAGPNVFSGYLE-AAHNKGLW-----LEDGWLNTGDLGRI 455
Query: 464 DKFQYFYFKDRTGD 477
D YF+ R D
Sbjct: 456 DADGYFWLTGRAKD 469
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 99.6 bits (249), Expect = 5e-23
Identities = 78/284 (27%), Positives = 119/284 (41%), Gaps = 54/284 (19%)
Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA---ISGRYQTGLTSDDVVYTTLPLYHTAG 263
P D ++TSGTTG PK +TH + + + I+ ++ LT D +PL+H G
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTH-KNLLASARNIAKSHK--LTPSDRCLNVMPLFHIHG 57
Query: 264 GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE-KPEDTQ 322
++ + LL G +VV KFSAS FW D KY T + + + LL + P
Sbjct: 58 LIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPP 117
Query: 323 HSVKMMIGNG---LRPQVWEPFQKRFGLDRICEFYGATE-----GNANLMNADGKVGAVG 374
++ I + L P V + +KRFG+ + E YG TE + L K G+VG
Sbjct: 118 PRLR-FIRSASAPLPPAVLDRLEKRFGVP-VLEAYGMTEAAHQIASNPLPPLVRKPGSVG 175
Query: 375 YIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG----ILIGMIKESRAESHF 430
P G I + DG +P PG I+I R +
Sbjct: 176 ---------RPAG-------VEVAILDDDGRPLP-----PGQEGEIVI------RGPNVT 208
Query: 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
GY + + ++ R+ + F TGD+ D+ Y + R
Sbjct: 209 AGYLNNPEANREAFRDGW------FRTGDLGYLDEDGYLFLTGR 246
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 99.6 bits (249), Expect = 2e-22
Identities = 72/262 (27%), Positives = 112/262 (42%), Gaps = 31/262 (11%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
VT+ ++E SNR+A+ ++ GL+ GD VA+ +E PE+ ++ + G+ IN
Sbjct: 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINW-- 68
Query: 128 RQHILIHSIK--VAEC--KAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPS 182
H+ I V + K +I A L++ E+ +P G+ L A +P
Sbjct: 69 --HLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVV------AGPVPG 120
Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAV--MTHVR-----AMF 235
+E L A P I + Y+SGTTG PK + + M
Sbjct: 121 FRSYEEAL----AAQPDTPIADETAGADML--YSSGTTGRPKGIKRPLPGLDPDEAPGMM 174
Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIK 295
+A+ G + D V + PLYHTA G L G TVV+ KF A +
Sbjct: 175 LALLG-FGMYGGPDSVYLSPAPLYHTAPLRFG-MSALALGGTVVVMEKFDAEEALALIER 232
Query: 296 YNCTVAQYIGEMCRYLLAVPEK 317
Y T +Q + M +L +PE+
Sbjct: 233 YRVTHSQLVPTMFVRMLKLPEE 254
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 98.6 bits (246), Expect = 1e-21
Identities = 71/268 (26%), Positives = 112/268 (41%), Gaps = 18/268 (6%)
Query: 211 LAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ 270
LA+I S G A +T+ R A L D VY PL+H +G L+ +G
Sbjct: 608 LAFIAFSTAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGG 667
Query: 271 CLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIG 330
++GGS + + F ++ +Y TV Y M R ++ P H V++ IG
Sbjct: 668 AVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIG 727
Query: 331 NGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADG-KVGAVGY-IPYIAIPFYPVGL 388
+G+ +WE + F + EF+ T+G A L N G K+G+ G +P V L
Sbjct: 728 SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANVSGAKIGSKGRPLPGAG----RVEL 783
Query: 389 IKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVY 448
DPE + + G + E G+L+ G D AS + R V+
Sbjct: 784 AAYDPEHDLILEDDRGFVRRAEVNEVGVLLA---------RARGPIDPTAS---VKRGVF 831
Query: 449 SHGDAAFNTGDILIKDKFQYFYFKDRTG 476
+ D +T + +D ++ DR G
Sbjct: 832 APADTWISTEYLFRRDDDGDYWLVDRRG 859
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 97.5 bits (243), Expect = 1e-21
Identities = 101/431 (23%), Positives = 168/431 (38%), Gaps = 67/431 (15%)
Query: 71 TFQ-VEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFINTNQR 128
TF ++D+SN+ ANFFK+ G+ +GD V L ++ + E+ M L L KIG +A
Sbjct: 49 TFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSM-LALHKIGAIAIPATHMLT 107
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
+++ I+ A K I+ E + ++ P + V D+
Sbjct: 108 AKDIVYRIEAAGIKMIVCIGE-DGVPEHIDEAAP--ECGSPTLLVLVGDPVPEGWIDFDK 164
Query: 189 ELPEVSA--KSPT-EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG 245
E+ S + PT D N D L +TSGTTG+PK H + ++ +Y
Sbjct: 165 EIENASPDFERPTGNDATCND--DILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQN 222
Query: 246 LTSDDVVYTTLPLYHTAGGLLGIGQCLLG--------GSTVVI--RSKFSASNFWKDCIK 295
+ + T G G+ + G G+ V + KF N + K
Sbjct: 223 VKEGGLHLTVADT--------GWGKAVWGKLYGQWIAGAAVFVYDYDKFDPKNLLEKIEK 274
Query: 296 YNCTVAQYIGEMCRYLLAVPEKPEDTQH----SVK--MMIGNGLRPQVWEPFQKRFGLDR 349
Y T + R+L+ ED S++ G L P+V+ F+++ G+ +
Sbjct: 275 YGVTTFCAPPTIYRFLIK-----EDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGI-K 328
Query: 350 ICEFYGATEGN---ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC 406
+ E +G TE A + K G++G P Y + +I DP+
Sbjct: 329 LMEGFGQTETTLTIATFPWMEPKPGSMGK----PSPGYDIDII--DPDGK---------- 372
Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
C+ E G ++ + + F GY ++ + Y H TGD D+
Sbjct: 373 -SCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYH------TGDTAWMDED 425
Query: 467 QYFYFKDRTGD 477
Y +F R D
Sbjct: 426 GYLWFVGRADD 436
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 95.4 bits (238), Expect = 5e-21
Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 19/299 (6%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-- 125
+T+ ++ R A + G+ +GD VA++ P +V LG K G V +NT
Sbjct: 30 RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRY 89
Query: 126 --NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
++ +IL + KA+ +P + +
Sbjct: 90 TADEAAYILARG----DAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMK 145
Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS--GR 241
T + ++A P E + P D ++TSGTTG PK A++TH R + +
Sbjct: 146 TF--TDF--LAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTH-RQLLSNAADWAE 200
Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA 301
Y GLT D P +H G G+ L+ G+T++ F ++ TV
Sbjct: 201 Y-LGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVL 259
Query: 302 QYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE 358
M LL P++ + S+++ + + + E F+ G+D + YG +E
Sbjct: 260 PGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSE 318
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 94.3 bits (235), Expect = 2e-20
Identities = 61/250 (24%), Positives = 89/250 (35%), Gaps = 30/250 (12%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV-----CMWLGLSKIGVVAAF 122
+T+ ++ + +A+ S G+ GD VA+F +PE+ + LG V
Sbjct: 45 AITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG----AVSVPI 100
Query: 123 INTN---QRQHILIHSIKVAECKAIIYG--------AELSEALTEVKDSIPGISLYAAGT 171
+T+ Q +IL S E K I + E +V D I I L
Sbjct: 101 YSTSTPEQLAYILNES----ESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAV 156
Query: 172 RRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHV 231
+A VL L + + I KP D IYTSGTTG PK ++TH
Sbjct: 157 E--AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214
Query: 232 RAMFMAIS-GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFW 290
+ + D V + LPL H G L V + K
Sbjct: 215 NLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGG--LALYGGVTVLFKEDPRTLL 272
Query: 291 KDCIKYNCTV 300
+D + TV
Sbjct: 273 EDLKEVRPTV 282
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 90.4 bits (225), Expect = 7e-20
Identities = 78/283 (27%), Positives = 112/283 (39%), Gaps = 37/283 (13%)
Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL 266
P D AY +T GTTG PK A +H + A +GL DV+ LPL+H G ++
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60
Query: 267 GIGQCLLGGSTVVI------RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED 320
L G+TVV+ R+ +NFWK +Y T+ + + LL VP D
Sbjct: 61 TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDAD 120
Query: 321 TQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNA----NLMNADGKVGAVG 374
S++ + L +V F+ G+ + E YG TEG N + G+VG
Sbjct: 121 IS-SLRYALTGAAPLPVEVARRFEAVTGV-PVVEGYGMTEGTGVSAINPRGGPRRPGSVG 178
Query: 375 YIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA 434
+P+ V + K D L C E G+L R + F GY
Sbjct: 179 L----RLPYTRVRVAKLDAG--------GALGRDCAPGEVGVLA-----IRGPNVFPGYL 221
Query: 435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ + R D NTGD+ D Y + R D
Sbjct: 222 N--DAHNAGARL----EDGWLNTGDLGRIDADGYLWLTGRAKD 258
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 91.9 bits (229), Expect = 7e-20
Identities = 105/440 (23%), Positives = 173/440 (39%), Gaps = 89/440 (20%)
Query: 63 TGAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA 121
TG +T+ ++E R+A ++G ++GD V L E+ ++L + G V
Sbjct: 29 TGR---ALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVT 85
Query: 122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP 181
N +Y +E +VKDS +++ + K + L
Sbjct: 86 TANP-------------------LYTP--AEIAKQVKDSGAKLAITTSELAEKLASLALE 124
Query: 182 STTLLDEELPEVSAKS----------PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHV 231
LLD +A P I K D A Y+SGTTG K ++TH
Sbjct: 125 PVVLLDSADDGSAAIDDLLFADEPEPPVVVI---KQDDVAALPYSSGTTGRSKGVMLTH- 180
Query: 232 R---AMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG-GSTVVIRSKFSAS 287
R A + +DV LP++H GL I LL G+TVV+ +F
Sbjct: 181 RNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIY-GLTVILLALLRLGATVVVMPRFDLE 239
Query: 288 NFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQH---SVKMMIGNG---LRPQVWEPF 341
F KY T + + +LA+ + P ++ S+K IG+G L ++ E F
Sbjct: 240 KFLAAIEKYKVTHLPVVPPI---VLALVKHPIVDKYDLSSLK-QIGSGAAPLGKELAEAF 295
Query: 342 QKRFGLDRICEFYGATE----GNANLMNADG-KVGAVGYIPYIAIPFYPVGLIKCDPETS 396
+ RF + + YG TE + K G+VG + +P ++ DPET
Sbjct: 296 RARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRL----VPNVEAKIV--DPETG 349
Query: 397 EPI-RNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA 454
E + N+ G L + P ++ G + + +A+ + I ++ + H
Sbjct: 350 ESLPPNQPGELWV----RGPQVMKGYLN------------NPEATAETIDKDGWLH---- 389
Query: 455 FNTGDILIKDKFQYFYFKDR 474
TGD+ D+ Y + DR
Sbjct: 390 --TGDLGYFDEDGYLFIVDR 407
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 91.5 bits (228), Expect = 8e-20
Identities = 113/411 (27%), Positives = 167/411 (40%), Gaps = 86/411 (20%)
Query: 75 EDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIH 134
+ S R+AN + G++ GD VA+ +E PE + ++L + G V +NT L +
Sbjct: 35 DAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDY 94
Query: 135 SIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE----L 190
I AE ++ L+++ AAG V LD + L
Sbjct: 95 FIGDAEPALVVCDPANFAWLSKIAA--------AAGAPH-----VET----LDADGTGSL 137
Query: 191 PEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSD 249
E +A +P + + +D LA I YTSGTTG K A+++H + A++ T D
Sbjct: 138 LEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPD 197
Query: 250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
DV+ LP++HT G + LL G++++ KF + M R
Sbjct: 198 DVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDP--------------DAVLALMPR 243
Query: 310 --YLLAVP-------EKPEDTQHSVKMM--IGNG---LRPQVWEPFQKRFGLDRICEFYG 355
++ VP ++P T+ + M +G L + FQ+R G I E YG
Sbjct: 244 ATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG-HAILERYG 302
Query: 356 ATEGNANLMNA-DGK--VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAE 412
TE N N N DG+ G VG+ P V L DPET
Sbjct: 303 MTETNMNTSNPYDGERRAGTVGF------PLPGVSLRVTDPETGA----------ELPPG 346
Query: 413 EPGILIGMIKESRAESHFNGY---ADKKASEKKILRNVYSHGDAAFNTGDI 460
E IGMI E + + F GY +K A E R D F TGD+
Sbjct: 347 E----IGMI-EVKGPNVFKGYWRMPEKTAEE---FRA-----DGFFITGDL 384
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 89.9 bits (224), Expect = 4e-19
Identities = 83/340 (24%), Positives = 135/340 (39%), Gaps = 50/340 (14%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+T+ ++E+ +NR+A++ ++GL GD V ++ + EYV LG K V +N N
Sbjct: 28 RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP--VNVNY 85
Query: 128 R------QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLY---AAGTRRKPQAK 178
R +++L S + A++Y E + + EV +P + G+
Sbjct: 86 RYVEDELRYLLDDS----DAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPG 141
Query: 179 VLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI 238
+ E+ ++A SP D + P D L +YT GTTG+PK VM +F +
Sbjct: 142 AVD-----YEDA--LAAGSPERDFGERSPDD-LYLLYTGGTTGMPK-GVMWRQEDIFRVL 192
Query: 239 SG--RYQTG---LTSDDVV-----------YTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282
G + TG +++ + PL H A G L G TVV+
Sbjct: 193 LGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGA-GQWAAFAALFSGQTVVLLP 251
Query: 283 --KFSASNFWKDCIKYNCTVAQYIGE-MCRYLLAVPEKPEDTQHSVKMMIGNG---LRPQ 336
+F A W+ + V +G+ M R LL E S I +G P
Sbjct: 252 DVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPS 311
Query: 337 VWEPFQKRFGLDRICEFYGATEGNANL--MNADGKVGAVG 374
V E + + + G++E A G V G
Sbjct: 312 VKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGAVHTGG 351
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 88.2 bits (219), Expect = 8e-19
Identities = 75/286 (26%), Positives = 108/286 (37%), Gaps = 49/286 (17%)
Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP---LYHTAG 263
D +TSGTTGLPK + TH + ++G Y L DD+ +T
Sbjct: 80 ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWS 139
Query: 264 GLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMC------RYLLAVPE 316
L LLG + V +F A + +Y T C R LL
Sbjct: 140 SLF--APWLLGAAVFVYHGRRFDAERTLELLERYGVTT------FCAPPTAYRMLLQQDL 191
Query: 317 KPEDTQH-SVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADG---KVGA 372
D H + G L P+V + ++ GL I + YG TE + N G K G+
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWRAATGLP-IRDGYGQTETGLLVANFPGMEVKPGS 250
Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG-LCIPCKAEEPGILIGMIKESRAESHFN 431
+G P Y V +I D E +E ++G + + K PG+ F
Sbjct: 251 MGR----PAPGYRVAII--DDEGNELPPGEEGDIAVRVKPRPPGL-------------FR 291
Query: 432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
GY + +R + + TGD IKD+ YF+F R D
Sbjct: 292 GYLKDPEKTEATIRGDW------YLTGDRAIKDEDGYFWFVGRADD 331
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 87.3 bits (217), Expect = 1e-18
Identities = 86/429 (20%), Positives = 147/429 (34%), Gaps = 121/429 (28%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
++T+ +++ S R+A + GL GD VA+ EYV ++L + + G VA +N +
Sbjct: 11 SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
L + + ++ ++ A + +Y +GT
Sbjct: 71 PAAELAYILSDSQPSLLVDPA---------------LIIYTSGT---------------- 99
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
TG PK V+TH A + T
Sbjct: 100 --------------------------------TGRPKGVVLTHGNLAANARALVEAWRWT 127
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
+ DV+ LPL+H G + L G++V +F + TV
Sbjct: 128 ASDVLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITV------- 180
Query: 308 CRYLLAVP-------EKPEDTQHSVK-------MMIGNG-LRPQVWEPFQKRFGLDRICE 352
+ VP E E + + G+ L V E +++R G + E
Sbjct: 181 ---FMGVPTIYTRLLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGH-TLLE 236
Query: 353 FYGATEGNANLMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPC 409
YG TE L N + + G VG +P V + D + EP+ +
Sbjct: 237 RYGMTETGMALSNPLDGERRPGTVG------LPLPGVEVRIVDEDGGEPLAAGE------ 284
Query: 410 KAEEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGDAAFNTGDILIKDKFQY 468
+G I + R + F+ Y +K +A+ + D F TGD+ + D+ Y
Sbjct: 285 --------VGEI-QVRGPNVFSEYWNKPEATAEAF------TEDGWFKTGDVGVVDEDGY 329
Query: 469 FYFKDRTGD 477
+ R D
Sbjct: 330 YRILGRKSD 338
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 87.7 bits (218), Expect = 2e-18
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 20/220 (9%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+ T+ +++ NR+A GL++GD VA Y +WL ++ G V +N
Sbjct: 36 SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFML 95
Query: 128 R----QHILIHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLP 181
+IL HS +A + L+ +P + L R+ L
Sbjct: 96 TGEELAYILDHS----GARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLD 151
Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISG 240
+ S P ++ D LA I YTSGT LPK A++TH + +S
Sbjct: 152 FADWAEAG----SVAEPDVEL----ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC 203
Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
+++DD+ LPLYH A + +G L G+T VI
Sbjct: 204 IVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVI 243
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 87.5 bits (217), Expect = 2e-18
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 23/232 (9%)
Query: 65 AYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN 124
+Y Y+ ++ ++R+AN+ +KG++ GD VA + G E+ ++L K+G V+ +
Sbjct: 49 SYTYS---ALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLL 105
Query: 125 TNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
+ R+ L+ + C+A ++ A T D I + + Q L
Sbjct: 106 PSWREAELVWVLNK--CQAKMFFAPTLFKQTRPVDLILPL---------QNQLPQLQQIV 154
Query: 185 LLDEELPEVSAKSPTEDIKKNKP--------SDKLAYI-YTSGTTGLPKAAVMTHVRAMF 235
+D+ P S+ S ++ I +P D+LA + +TSGT GLPK ++TH +
Sbjct: 155 GVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILA 214
Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSAS 287
+ + LT DV PL H G L G+ L G+ V+ F+
Sbjct: 215 SERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPD 266
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 87.1 bits (216), Expect = 3e-18
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+++D +A +G+ GD V + M + E+V L + +G +A +N +
Sbjct: 47 ELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEI 106
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISL-YAAGTRRKPQAKVLPSTTLLDEELP 191
+ ++ A L+ T V+D +P +S AG VL LL E P
Sbjct: 107 AFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGS--SDDSVLGYEDLLAEAGP 164
Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL-TSDD 250
DI + P+ +YTSGTTG PK AV+TH A++ G + D
Sbjct: 165 AH----APVDIPNDSPA---LIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSD 217
Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
V + +PL+H A G+ + LL G+ VI
Sbjct: 218 VGFVGVPLFHIA-GIGSMLPGLLLGAPTVI 246
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 85.7 bits (213), Expect = 3e-18
Identities = 72/281 (25%), Positives = 110/281 (39%), Gaps = 39/281 (13%)
Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL 266
P D YTSGTTG PK A++TH + S + GLT D +PL+H G +L
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 267 GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVK 326
G+ L G+T+V+ KF + + T + M LL P+ + S++
Sbjct: 61 GVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLR 120
Query: 327 -MMIGNGLRP-QVWEPFQKRFGLDRICEFYGATEGNANLMNADG------KVGAVGYIPY 378
+ G P ++ ++ F + I YG TE + G + G VG
Sbjct: 121 TGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVG---- 176
Query: 379 IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGY-ADK 436
+P V ++ DP+ E E G I + R S GY D
Sbjct: 177 RPLPGVEVKIV--DPDGGE-----------VPPGEVGEICV------RGYSVMKGYYNDP 217
Query: 437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+A+ + I + + H TGD+ D+ Y R D
Sbjct: 218 EATAEAIDADGWLH------TGDLGYMDEDGYLRIVGRIKD 252
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 86.9 bits (216), Expect = 3e-18
Identities = 72/311 (23%), Positives = 125/311 (40%), Gaps = 46/311 (14%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN- 126
T+T+ ++++ SN +A + G++ GD VA+ +V K+G +NT
Sbjct: 74 TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGF 133
Query: 127 ---QRQHILIHSIKVAE---CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL 180
Q +VA KA++Y E ++ L+ + + + + +
Sbjct: 134 SGPQLA-------EVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPS--- 183
Query: 181 PSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVR-----AMF 235
ST DE L ++ A S T + K + I TSGTTG PK A A
Sbjct: 184 GST---DETLDDLIAGSSTAPLPKPPKPGGIV-ILTSGTTGTPKGAPRPEPSPLAPLAGL 239
Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG---GSTVVIRSKFSASNFWKD 292
++ + + + P++H G L GSTVV+R +F +D
Sbjct: 240 LS-----RVPFRAGETTLLPAPMFHA----TGWAHLTLAMALGSTVVLRRRFDPEATLED 290
Query: 293 CIKYNCTVAQYIGEMCRYLLAVPEKPE---DTQHSVKMMI--GNGLRPQVWEPFQKRFGL 347
K+ T + M +L + + DT S+K++ G+ L P++ + FG
Sbjct: 291 IAKHKATALVVVPVMLSRILDLGPEVLAKYDTS-SLKIIFVSGSALSPELATRALEAFG- 348
Query: 348 DRICEFYGATE 358
+ YG+TE
Sbjct: 349 PVLYNLYGSTE 359
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 86.8 bits (215), Expect = 3e-18
Identities = 104/417 (24%), Positives = 168/417 (40%), Gaps = 54/417 (12%)
Query: 76 DHSNRIANFF-KSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIH 134
S + AN + GLQRGD VA+ + PE+ + + + G+V +++
Sbjct: 49 SLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILY 108
Query: 135 SIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD-----EE 189
++ ++ K I+ EL+ A+ + P + + K+L S D +E
Sbjct: 109 RLQASKAKCIVTSDELAPAVDSIASECPSL-----------KTKLLVSEHSRDGWLNFKE 157
Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF-MAISGRYQTGLTS 248
L + S K K + +A +TSGTTG PK A +H + ++GRY LT
Sbjct: 158 L--LKEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTP 215
Query: 249 DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS--KFSASNFWKDCIKYNCTVAQYIGE 306
D+++ + + + G+ V + +F + KY T
Sbjct: 216 SDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPT 275
Query: 307 MCRYLLA---VPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL 363
+ R L+ K + +H V G L P+V E ++ + GLD + E YG TE
Sbjct: 276 VYRMLVQQDLTSYKFKSLRHCVT--GGEPLNPEVLEQWKAQTGLD-LYEGYGQTETGLIC 332
Query: 364 MNADG---KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGM 420
N G K G++G A P Y V +I + +G +P E I I
Sbjct: 333 ANFKGMKIKPGSMGK----ASPPYDVQII-----------DDNGNVLP-PGTEGDIGI-R 375
Query: 421 IKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+K +R F+ Y D +R GD + TGD I D+ YF+F R D
Sbjct: 376 VKPTRPFCLFSCYVDNPEKTAATIR-----GD-FYITGDRGIMDEDGYFWFVGRADD 426
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 85.8 bits (213), Expect = 7e-18
Identities = 101/419 (24%), Positives = 169/419 (40%), Gaps = 71/419 (16%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
VTF ++ + +A + G+++GD VAL M+ E + + L ++G VA +NT
Sbjct: 27 KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRL 86
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+ L+ + AE K +I + L K
Sbjct: 87 SREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------------SVKF-------- 121
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
EL + I++ D++A I YTSGTTG PK + T+ + A+ GL
Sbjct: 122 AELMNGPKEEAE--IQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGL 179
Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
T DD +P++H GL + + ++ G VV+ KF A K T+ +
Sbjct: 180 TEDDCWLAAVPIFHI-SGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVST 238
Query: 307 MCRYLLAVPEKPEDTQH-SVK-MMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
M + LL E T S + M++G G P+ K G+ + YG TE + ++
Sbjct: 239 MLQRLLE--RLGEGTYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVY-QSYGMTETASQIV 295
Query: 365 -----NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILI 418
+A K+G+ G P +P L I KDG + E G I++
Sbjct: 296 TLSPEDALTKLGSAGK------PLFPCEL---------KIE-KDG--VVVPPFEEGEIVV 337
Query: 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ + GY +++ + ++ ++ + F TGDI D+ + Y DR D
Sbjct: 338 ------KGPNVTKGYLNREDATRETFQDGW------FKTGDIGYLDEEGFLYVLDRRSD 384
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 85.3 bits (211), Expect = 8e-18
Identities = 69/337 (20%), Positives = 133/337 (39%), Gaps = 43/337 (12%)
Query: 73 QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHI 131
Q+ ++ +++A + + +++G+ +A+ + EY+ + ++K+ +A +N ++
Sbjct: 32 QLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENE 91
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSI---PGISLYAAGTRRKPQAKVLPSTTLLDE 188
LI +K + + ++ IS+
Sbjct: 92 LIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISI---------------------T 130
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS 248
L E+ + ++KN+ S YTSGTTG PK AV+T + A++ + LT
Sbjct: 131 SLKEIEDRKIDNFVEKNE-SASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTM 189
Query: 249 DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMC 308
D LPL+H G L L G +++ KF + K+ TV + +
Sbjct: 190 HDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIH 249
Query: 309 RYLLAVPEKPEDTQHSVKMMIGNGLRP---QVWEPFQKRFGLDRICEFYGATEGNANLM- 364
+ L+ + SV+ NG P ++ F R G + +G TE + +
Sbjct: 250 QALINCSKFETTNLQSVRWFY-NGGAPCPEELMREFIDR-GF-LFGQGFGMTETSPTVFM 306
Query: 365 ----NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSE 397
+A KVG++G + F LI D ++
Sbjct: 307 LSEEDARRKVGSIGK----PVLFCDYELI--DENKNK 337
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 85.0 bits (211), Expect = 1e-17
Identities = 99/403 (24%), Positives = 150/403 (37%), Gaps = 97/403 (24%)
Query: 109 MWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYA 168
L L G V +N + L + K A K +I E L + G+ +
Sbjct: 47 ANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVITSRAFLEKLK-----LEGLVVLL 101
Query: 169 AGTR-------RKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTG 221
G R R +K L +LP + + KP D ++TSG+ G
Sbjct: 102 EGVRIVYLEDLRAKISKADKLKAFLAAKLPPALLR---LFLAGAKPDDPAVILFTSGSEG 158
Query: 222 LPKAAVMTH------VRAMFMAISGRYQTGLTSDDVVYTTLPLYH----TAGGLLGIGQC 271
LPK V++H + + I L ++DV+ LPL+H T LL
Sbjct: 159 LPKGVVLSHRNLLANIDQIAAVI------DLNTEDVLLGALPLFHAFGLTVTLLLP---- 208
Query: 272 LLGGSTVVIRSKFSASNFWKDC---IKYNCTVAQYIGEMCRYLLAVPE---------KPE 319
LL G VV + + K Y T+ L P PE
Sbjct: 209 LLTGLRVVYY--PNPLDAKKIAELIRDYKATI----------LCGTPTFLRGYARNAHPE 256
Query: 320 DTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN----ANLMNADGKVGAV 373
D S+++++ L E F+++FG+ RI E YGATE + N + K G V
Sbjct: 257 DFS-SLRLVVAGAEKLPEATRELFEEKFGI-RILEGYGATECSPVISVNTPMGN-KPGTV 313
Query: 374 GYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY 433
G +P V ++ PET E E G+L+ R + +GY
Sbjct: 314 G----RPLPGIEVRIV--SPETHE----------ELPIGEGGLLL-----VRGPNVMSGY 352
Query: 434 A--DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
++K SE ++L GD ++TGDI D+ + R
Sbjct: 353 LNNEEKTSEVEVL------GDGWYDTGDIGKIDEDGFLTIVGR 389
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 85.1 bits (211), Expect = 1e-17
Identities = 86/352 (24%), Positives = 129/352 (36%), Gaps = 92/352 (26%)
Query: 50 RPLFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-V 107
+P + TG VT+ ++++ SNR+A+ F+S GL+RGD VA+FME Y
Sbjct: 13 KPAVIM-----ASTGE---VVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLE 64
Query: 108 CMWLGLSKIGVV------------AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALT 155
W + G+ AA+I + LI S + L +
Sbjct: 65 VCWAAE-RSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDV-----ARALLKQCP 118
Query: 156 EVK--------DSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKP 207
V+ + G YA LP+T + DE
Sbjct: 119 GVRHRLVLDGDGELEGFVGYAEAVAG------LPATPIADE------------------- 153
Query: 208 SDKLAYIYTSGTTGLPKAAV-------MTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYH 260
S +Y+SGTTG PK + + + G SD V + PLYH
Sbjct: 154 SLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW--GFRSDMVYLSPAPLYH 211
Query: 261 TA-GGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPE 319
+A + + L G TV++ F A + +Y T Q + M +L +PE+
Sbjct: 212 SAPQRAVMLVIRL--GGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR 269
Query: 320 DTQ--HSVKMMIGNG--LRPQV-------WEPFQKRFGLDRICEFYGATEGN 360
D S+++ I PQV W P I E+Y ATEG
Sbjct: 270 DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPI--------IHEYYAATEGL 313
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 83.4 bits (206), Expect = 4e-17
Identities = 73/332 (21%), Positives = 137/332 (41%), Gaps = 37/332 (11%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQR 128
++E R+ + G++R + V L M ++ +LG + G+V +NT +
Sbjct: 35 ELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDY 94
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
++L S + + EL + P + R + L
Sbjct: 95 AYMLEDS----RARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAE------ 144
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGLT 247
++ +S + D ++Y+SG+TG+PK V TH + A + R G+
Sbjct: 145 ---LLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIR 201
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCL-----LGGSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
DDVV++ L+ G+G L +G +TV++ + + + ++ T+
Sbjct: 202 EDDVVFSAAKLFFA----YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFY 257
Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE-G 359
+ + +LA P P + Q +++ G L +V + +Q RFG+D I + G+TE
Sbjct: 258 GVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVD-IVDGIGSTEML 316
Query: 360 NANLMNADGKV--GAVGYIPYIAIPFYPVGLI 389
+ L N G V G G +P Y + L+
Sbjct: 317 HIFLSNLPGDVRYGTSGK----PVPGYRLRLV 344
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 82.9 bits (205), Expect = 4e-17
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 32/218 (14%)
Query: 71 TFQVED-HSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
T+Q D + +A K++G++ G VAL + E V + +G A +NT +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAG-TRRKPQAKVLPSTTLLDE 188
+ E +++D + L + + QA L
Sbjct: 61 N---------------------ERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGR 99
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS 248
+SA + I ++TSGTTG PKA T A+ + G T
Sbjct: 100 YETSLSASFNMDQIA--------TLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTE 151
Query: 249 DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSA 286
DD +LPLYH GL + + L+ G+T+ I KF+
Sbjct: 152 DDNWLLSLPLYHI-SGLSILFRWLIEGATLRIVDKFNQ 188
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 83.2 bits (206), Expect = 6e-17
Identities = 60/249 (24%), Positives = 110/249 (44%), Gaps = 18/249 (7%)
Query: 58 REVPMTGA---YKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL 113
RE P A Y + +T+ ++++ S+R A + +G+ GD VA+F+ P++ ++ G+
Sbjct: 44 RERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGI 103
Query: 114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAG-TR 172
K+G V ++ R+H L + + A + ++ +L+ + +V+ +
Sbjct: 104 LKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLAD 163
Query: 173 RKPQAKVLPSTTLLDEELPEVSA--------KSPTEDIKKNKPS-DKLAYI-YTSGTTGL 222
P LP L + ++ T + P+ D LA + YT GTTG+
Sbjct: 164 VLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGM 223
Query: 223 PKAAVMTHVRAMF--MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
PK T R M A + D V + LP + AG G+ L G+T+V+
Sbjct: 224 PKGCEHTQ-RDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVL 282
Query: 281 RSKFSASNF 289
+++ A F
Sbjct: 283 LARWDAVAF 291
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 81.1 bits (201), Expect = 8e-17
Identities = 69/279 (24%), Positives = 104/279 (37%), Gaps = 32/279 (11%)
Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL 266
D A IYTSG+TG PK +++H A S LT DD + LP GL
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDY-GLS 59
Query: 267 GIGQCLLGGSTVVIRSKFS-ASNFWKDCIKYNCTVAQYIGEMCRYLL-AVPEKPEDTQHS 324
+ G T+V+ S+F+ + K K T + LL P ED S
Sbjct: 60 QLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFP-S 118
Query: 325 VKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNA----NLMNADGKVGAVGYIPY 378
++ + G L + ++ F ++ YG TE D + ++G
Sbjct: 119 LRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---- 174
Query: 379 IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKA 438
AIP + ++DG C E G L+ R + GY +
Sbjct: 175 KAIPN-----------VELWVVDEDGN--RCAPGEVGELV-----HRGANVMKGYWNDPE 216
Query: 439 SEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ + LR G+ TGD++ D+ Y YF R D
Sbjct: 217 ATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDD 255
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 81.1 bits (201), Expect = 2e-16
Identities = 72/299 (24%), Positives = 113/299 (37%), Gaps = 56/299 (18%)
Query: 70 VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQR 128
+T+ +++ +R+A + G+ GD V + + E+V ++ L K+G + R
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR 100
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
H + H + +E KA I + D G YAA R L E
Sbjct: 101 AHEIGHFARQSEAKAYI-----------IADRFSGFD-YAALARE------------LLE 136
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGLT 247
ELP+V + + GTTGLPK TH ++ A S GL
Sbjct: 137 ELPDV-----------------ALFQLSGGTTGLPKLIPRTHNDYLYSARASAEA-CGLD 178
Query: 248 SDDVVYTTLPLYHTA----GGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
V LP H GLLG LL G TVV+ S + + T
Sbjct: 179 PGTVYLAVLPAAHNFTLSSPGLLG---ALLAGGTVVLHHPPSPDVAFPLIEREKVTHTAL 235
Query: 304 IGEMCRYLLAVPEKPEDTQHSVKMMIGNG---LRPQVWEPFQKRFGLDRICEFYGATEG 359
+ + L E + S++ +I G L P++ ++R G + + +G EG
Sbjct: 236 VPALLNLWLEAAEWDQADLSSLR-VIQVGGAPLSPELARRVEERLGC-PLQQVFGMAEG 292
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 80.7 bits (200), Expect = 2e-16
Identities = 66/294 (22%), Positives = 115/294 (39%), Gaps = 54/294 (18%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+T+ +++D ++R+A G++ GD VA + E+V ++L ++IG V I
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
R+ L ++ A + + +P G
Sbjct: 61 RERELGFILRQARARVLF---------------VPD---EFRGFDY-------------- 88
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
+P D +A + YTSGTTG PK + TH + S + GL
Sbjct: 89 AAMP-----------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGL 131
Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
T DDVV PL H G L G+ LL G+TVV++ ++ + + ++ T
Sbjct: 132 TPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATP 191
Query: 307 MCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE 358
LLA + S+++ + G + ++ + G ++ YG TE
Sbjct: 192 FLADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGA-KVVRAYGMTE 244
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 79.3 bits (196), Expect = 6e-16
Identities = 86/425 (20%), Positives = 142/425 (33%), Gaps = 104/425 (24%)
Query: 65 AYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
+ ++T+ ++ D +NR AN ++ G+ GD V L + PE V +L K G VA +
Sbjct: 6 CGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVAL 65
Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
N L H + + ++ A+ LY +GT
Sbjct: 66 NPLLTPQDLEHILDDSGAALLVTEAD-----------DIAYWLYTSGT------------ 102
Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRY 242
TG PK + H + A R
Sbjct: 103 ------------------------------------TGKPKGVMHRHRDPLTFAEAFARE 126
Query: 243 QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL-----GGSTVVIRSKFSASNFWKDCIKYN 297
GL D ++++ L+ G+G LL G S V++ + ++
Sbjct: 127 LLGLQPGDRIFSSSKLFFA----YGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHR 182
Query: 298 CTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355
TV + + R LL SV++ + G L + E + + G++ I + G
Sbjct: 183 PTVLFGVPALYRALLESGAGSAPLFRSVRLCVSAGEALPAGLAERWAEATGIE-ILDGIG 241
Query: 356 ATE-GNANLMNADGKV--GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAE 412
+TE + + N G G G +P Y L D G +P A
Sbjct: 242 STEVLHIFISNRPGAARPGTTGR----PVPGYEARL--VDE---------SGREVP--AG 284
Query: 413 EPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFK 472
G L R S GY + ++ LR D TGD +D ++ ++
Sbjct: 285 TVGDLW-----VRGPSLAPGYWNLPEKTQRTLR------DGWLRTGDRFSRDADGWYRYQ 333
Query: 473 DRTGD 477
R D
Sbjct: 334 GRADD 338
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 78.9 bits (195), Expect = 1e-15
Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 33/300 (11%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
VE S R+A G+++GD V L + PE+V +LG S+ G V N +
Sbjct: 55 DVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEI 114
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL---DEE 189
K + K II + + L + + G+++ P L + L + E
Sbjct: 115 AKQAKASGAKLIITQSCYVDKLKGLAED-DGVTVVTIDD---PPEGCLHFSELTQADENE 170
Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY-----QT 244
LPEV P D +A Y+SGTTGLPK ++TH + + +++ +
Sbjct: 171 LPEVEI----------SPDDVVALPYSSGTTGLPKGVMLTH-KGLVTSVAQQVDGENPNL 219
Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQC-LLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
SDDV+ LP++H L + C L G+ ++I KF + ++ T+A +
Sbjct: 220 YFHSDDVILCVLPMFHIY-SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPF 278
Query: 304 IGEMCRYLLAVPEKPEDTQH---SVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE 358
+ + +LA+ + P ++ S++M++ L ++ + F+ + + + YG TE
Sbjct: 279 VPPI---VLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE 335
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 78.7 bits (194), Expect = 1e-15
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 24/228 (10%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
Q+ D +R+A + G+Q GD V ++ E++ ++IG + IN R L
Sbjct: 50 QLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASEL 109
Query: 133 IHSIKVAECKAIIYGAEL--SEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL 190
+++ + + +I S+ +++ +PG++ G + L L
Sbjct: 110 EYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP 169
Query: 191 PE--------------VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHV----R 232
P VS ++ E D + YTSGTTG PK A ++H
Sbjct: 170 PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNN 229
Query: 233 AMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
F+A S GLT D + +PLYH G +L C+ G+ +V
Sbjct: 230 GYFVAES----LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVY 273
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 78.4 bits (194), Expect = 2e-15
Identities = 53/224 (23%), Positives = 86/224 (38%), Gaps = 38/224 (16%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN--T 125
T+T+ +++ + IA ++ G GD V L ++V + G G +A
Sbjct: 23 TLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPR 81
Query: 126 NQRQHI--LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
+H+ L + A +A++ + + AL AA
Sbjct: 82 RLGRHLARLAAILADAGARAVLTTSAVLAALRA---------ALAAPAALLLLLIAADDL 132
Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH------VRAMFM 236
L P + +A++ YTSG+TG PK ++TH +RA+
Sbjct: 133 AALAAADWRPPPPDPDD----------IAFLQYTSGSTGAPKGVMVTHGNLLANLRAI-- 180
Query: 237 AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
GL DDV + LPLYH G + G+ Q L G VV+
Sbjct: 181 ----ARAFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVL 220
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 75.9 bits (187), Expect = 7e-15
Identities = 90/424 (21%), Positives = 153/424 (36%), Gaps = 106/424 (25%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
++ + S R+AN G++ GD VA + PE V L ++G + + T +
Sbjct: 5 ELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGPKAI 64
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
+ + + K ++ A L +
Sbjct: 65 EYRLGHSGAKVVVTNAANRGKLDD------------------------------------ 88
Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM-----FMAISGRYQTGLT 247
D A +YTSGTTGLPK V + A+ +M RY L
Sbjct: 89 ----------------DLFAQMYTSGTTGLPK-GVPVPLNALAAFYAYM----RYAIDLR 127
Query: 248 SDDVVYTT------LPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA 301
DDV + LY+ G L +G +TV + F+A N + + T
Sbjct: 128 DDDVFWNIADPGWAYGLYYAITGPL-----AMGITTVFLEGGFTAENTYDVLERLGVTNF 182
Query: 302 QYIGEMCRYLLAVP-EKPEDTQHSVKMM--IGNGLRPQVWEPFQKRFGLDRICEFYGATE 358
R L+A + + +++ G L P+V FQ G+ I + YG TE
Sbjct: 183 AGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEVVRWFQANLGV-TIHDHYGQTE 241
Query: 359 -----GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEE 413
GN + + + + G++G + +P Y + ++ D + E
Sbjct: 242 TGMPVGNHHALAHEVRAGSMG----LPLPGYRIAVLDDDGQPLAD-------------GE 284
Query: 414 PGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKD 473
PG L + S F+GY D +++ + + TGD++ +D+ YF+F
Sbjct: 285 PGQLAIDVASSPL-LWFSGYWDDPEKTAELIAGRW------YVTGDLVERDEDGYFWFIG 337
Query: 474 RTGD 477
R D
Sbjct: 338 RADD 341
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 72.7 bits (179), Expect = 8e-14
Identities = 71/310 (22%), Positives = 121/310 (39%), Gaps = 63/310 (20%)
Query: 73 QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF--INTNQ-- 127
++++ +NR+A ++ G+ GD VA+ +E E V L + K G AA+ ++
Sbjct: 4 ELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAG--AAYVPLDPAYPA 61
Query: 128 --RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTL 185
IL + A + ++ + L+ L + + +L
Sbjct: 62 ERLAFIL----EDAGARLLLTDSALASRLAGLVLPV-----------------ILLDPLE 100
Query: 186 LDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH--VRAMFMAISGRY 242
L + P D LAY IYTSG+TG PK V+TH + + ++ RY
Sbjct: 101 LAALDDAPAPPPPDAPSG----PDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRY 156
Query: 243 QTGLTSDDVVYTTLPLYHTAGG--LLGIGQCLLGGSTVVI------RSKFSASNFWKDCI 294
GL DD V L A + G LL G+T+V+ R +
Sbjct: 157 --GLDPDDRVLQFASLSFDASVEEIFG---ALLAGATLVVPPEDEERDDAALLAALIA-- 209
Query: 295 KYNCTVAQ---YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDR 349
++ TV + + A+P S++++I G L P + + ++ R R
Sbjct: 210 EHPVTVLNLTPSLLALL--AAALPPALA----SLRLVILGGEALTPALVDRWRARGPGAR 263
Query: 350 ICEFYGATEG 359
+ YG TE
Sbjct: 264 LINLYGPTET 273
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 73.4 bits (180), Expect = 9e-14
Identities = 64/298 (21%), Positives = 106/298 (35%), Gaps = 41/298 (13%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+++ +NR+A S G+ G+ VA+ + E V L + K G ++ L
Sbjct: 257 ELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERL 316
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
+ ++ + ++ A L +PG++ LD+ L E
Sbjct: 317 AYILEDSRPTLLLTQAHLRVDD----VGLPGLA--------------------LDDALSE 352
Query: 193 VSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAM--FMAISGRYQTGLTSD 249
+ P D LAY IYTSG+TG PK + H R+ GL +D
Sbjct: 353 IPDTDPIPQA---LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF--GLDAD 407
Query: 250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIGE 306
D V L A I LL G+ +V+ + + TV +
Sbjct: 408 DRVLALASLSFDASV-FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPL 466
Query: 307 MCRYLLAVPEKPEDTQH--SVKMMI--GNGLRPQVWEPFQKRFGLDRICE-FYGATEG 359
+ R LL P+ ++ ++ G L + + + L R YG TE
Sbjct: 467 LLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA 524
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 72.2 bits (177), Expect = 1e-13
Identities = 81/399 (20%), Positives = 142/399 (35%), Gaps = 60/399 (15%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
+A ++G++ VA+ + V L L ++G V A +N +K A
Sbjct: 40 GVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPR---------LKPA 90
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT 199
E +I E++ A+ + A + +VL L+ PE +
Sbjct: 91 EIAELIKRGEMTAAVI-----AVDAQVMDAIFQSGSGVRVLALGDLVGLGEPESAGPPIE 145
Query: 200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH----VRAMFMAISGRYQTGLTSDDVVYTT 255
+ +P YTSGTTGLPK AV+ R +FM+ + G +VV
Sbjct: 146 D--PPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHG--RHNVVLGL 201
Query: 256 LPLYHTAG--GLLGIGQCLLGGSTVVIRSKFSASNF--WKDCIKYNCTVAQ--YIGEMCR 309
+PLYH G +L + L G+ VV+ F ++ + + A ++ +
Sbjct: 202 MPLYHVIGFFAVL-VAALALDGTYVVVEE-FDPADALKLIEQERVTSLFATPTHLDALAA 259
Query: 310 YLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGK 369
P K + +H + P + YG TE +L D +
Sbjct: 260 AAEGAPLKLDSLEH---VTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPR 316
Query: 370 VGAV---GYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA 426
G G+ + + +G E G L+ + A
Sbjct: 317 TGTEMRPGF--FSEVRIVRIG---------------GSPDEALPNGEEGELV----VAAA 355
Query: 427 ESHFNGYADK-KASEKKILRNVYSHGDAAF--NTGDILI 462
++ F GY ++ +A+ +K+ Y D A +G + I
Sbjct: 356 DATFTGYLNQPQATAEKLQDGWYRTSDVAVVDPSGTVRI 394
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 71.8 bits (177), Expect = 2e-13
Identities = 66/242 (27%), Positives = 97/242 (40%), Gaps = 58/242 (23%)
Query: 76 DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
+ + +A + G+++GD V ++ PE+V +KIG + IN R L ++
Sbjct: 51 EEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYA 110
Query: 136 IKVAECKAII---------YGAELSEALTEVKDSIPGISLYAA-----------GTRRKP 175
+ + CKA+I Y A L E E+ PG L +A G + P
Sbjct: 111 LNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPG-QLQSARLPELRRVIFLGDEKHP 169
Query: 176 -----QAKVLPSTTLLDEELPEVSAK-SPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVM 228
+ + D EL A P + I N I YTSGTTG PK A +
Sbjct: 170 GMLNFDELLALGRAVDDAELAARQATLDPDDPI--N--------IQYTSGTTGFPKGATL 219
Query: 229 THV----------RAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV 278
TH AM LT +D + +PLYH G +LG C+ G+T+
Sbjct: 220 THRNILNNGYFIGEAM----------KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATM 269
Query: 279 VI 280
V
Sbjct: 270 VY 271
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 71.4 bits (175), Expect = 3e-13
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 18/223 (8%)
Query: 51 PLFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY 106
L +P A + T+T+ + + +A+ + GL RG+ VA++++ + E
Sbjct: 4 HLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLET 63
Query: 107 VCMWLGLSKIGVVAAFIN----TNQRQHILIHSIKVAECKA--IIYGAELSEALTEVKDS 160
V G + G V IN Q HIL A+C ++ +E + L
Sbjct: 64 VTAMFGAALAGGVFVPINPLLKAEQVAHIL------ADCNVRLLVTSSERLDLLHPALPG 117
Query: 161 IPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTT 220
+ ++ P P++ A + SD A +YTSG+T
Sbjct: 118 CHDLRTLIIVGDPAHASEGHPGEEPAS--WPKLLALGDADPPHPVIDSDMAAILYTSGST 175
Query: 221 GLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG 263
G PK V++H + A S DD + LPL G
Sbjct: 176 GRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG 218
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 70.3 bits (172), Expect = 7e-13
Identities = 83/299 (27%), Positives = 124/299 (41%), Gaps = 57/299 (19%)
Query: 198 PTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH---VRAM-----FMAISGRYQTGLTS 248
PT I+ D +A++ YT GTTG+ K A++TH V M ++A +G+ + G
Sbjct: 201 PTLQIE----PDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEG--- 253
Query: 249 DDVVYTTLPLYH----TAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
+VV T LPLYH TA GL+ + +GG +I + F K+ K T +
Sbjct: 254 CEVVITALPLYHIFALTANGLVFMK---IGGCNHLISNPRDMPGFVKELKKTRFTAFTGV 310
Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQ--VWEPFQKRFGLDRICEFYGATEGNA- 361
+ LL P + S+KM +G G+ Q V E +++ GL + E YG TE +
Sbjct: 311 NTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLV-EAYGLTETSPA 369
Query: 362 ---NLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILI 418
N + G++G + IP IK D T I LCI
Sbjct: 370 ACINPLTLKEYNGSIG----LPIPSTDA-CIKDDAGTVLAIGEIGELCI----------- 413
Query: 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ GY + K++ D +TGDI D+ + Y DR D
Sbjct: 414 ------KGPQVMKGYWKRPEETAKVM-----DADGWLHTGDIARMDEQGFVYIVDRKKD 461
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 70.3 bits (173), Expect = 7e-13
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 17/196 (8%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN----TNQR 128
R+AN +S G++ GD VA ++ ++ + +G V +N Q
Sbjct: 30 DFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSPEQI 89
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
+I+ H AE K I + L + +P + LP E
Sbjct: 90 AYIINH----AEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLP-NVYAYE 144
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMF---MAISGRYQT 244
EL + +SP + + A + YTSGTTG PK V +H R++ +A +
Sbjct: 145 EL--LEEESPEYEWP-ELDENTAAGLCYTSGTTGNPKGVVYSH-RSLVLHTLASALPDSL 200
Query: 245 GLTSDDVVYTTLPLYH 260
GL+ D V +P++H
Sbjct: 201 GLSESDTVLPVVPMFH 216
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 68.8 bits (169), Expect = 2e-12
Identities = 73/255 (28%), Positives = 104/255 (40%), Gaps = 52/255 (20%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVA-----A 121
T+ ++++ SN+ AN K G+++GD V +FM PE Y + LG K G + A
Sbjct: 73 KYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL-LGALKNGAIVGPLFEA 131
Query: 122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP 181
F+ R + +E K +I T +L RKP LP
Sbjct: 132 FMEEAVRDRLED-----SEAKVLI--------TTP--------ALL----ERKPADD-LP 165
Query: 182 S--TTLL---DEELPE--------VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVM 228
S LL D E + S DI+ D YTSG+TG PK +
Sbjct: 166 SLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLH 225
Query: 229 THVRAMFMA-ISGRYQTGLTSDDVVYTTL-PLYHTAGGLLGIGQCLLGGST-VVIRSKFS 285
H AM +G+Y L DDV + T P + T G GI L G+T V+ +FS
Sbjct: 226 VH-NAMLQHYQTGKYVLDLHEDDVYWCTADPGWVT-GTSYGIFAPWLNGATNVIDGGRFS 283
Query: 286 ASNFWKDCIKYNCTV 300
+++ Y TV
Sbjct: 284 PERWYRILEDYKVTV 298
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 68.4 bits (167), Expect = 3e-12
Identities = 70/285 (24%), Positives = 107/285 (37%), Gaps = 32/285 (11%)
Query: 89 GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148
GL GD VAL M E+V L S+ +V ++ ++ +AE + A
Sbjct: 64 GLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDP---------ALPIAEQRVRSQAA 114
Query: 149 ELSEALTEVKDSIPGISLYAAGTRRK-PQAKVLPSTTLLDEELPEV---SAKSPTEDIKK 204
L + G A T R P + + V +A PT
Sbjct: 115 GARVVLIDAD----GPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATST 170
Query: 205 N---KPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLY 259
+P D + ++T GTTGLPK TH + + AI Y+ L+ D +PLY
Sbjct: 171 PEGLRPDDAMI-MFTGGTTGLPKMVPWTHANIASSVRAIITGYR--LSPRDATVAVMPLY 227
Query: 260 HTAGGLLGIGQCLLGGSTVVI--RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP-- 315
H G + + L G V++ R +FSA FW D T + + + LL
Sbjct: 228 HGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAAT 287
Query: 316 EKPEDTQHSVKMM--IGNGLRPQVWEPFQKRFGLDRICEFYGATE 358
E +++ + L + + Q F +C F G TE
Sbjct: 288 EPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAF-GMTE 331
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 68.2 bits (167), Expect = 3e-12
Identities = 60/257 (23%), Positives = 102/257 (39%), Gaps = 39/257 (15%)
Query: 49 ARPLFVRTI-REVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV 107
ARP V I + P++ A ++ +R+A + ++G++RGD VA+++ E+V
Sbjct: 22 ARPDAVALIDEDRPLSRA-------ELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWV 74
Query: 108 CMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY-----GAELSEALTEVKDS-- 160
++L +++G +NT R H + H + + ++ G + + L V
Sbjct: 75 VLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDAL 134
Query: 161 --IPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIY-TS 217
+ I++ P L P P ++ D A ++ TS
Sbjct: 135 PPLRAIAVVDDAADATPAPAPGARVQLFALPDPA----PPAAAGERAADPDAGALLFTTS 190
Query: 218 GTTGLPK------AAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG--GLLGIG 269
GTT PK A ++ H RA+ A G V+ LP G LLG
Sbjct: 191 GTTSGPKLVLHRQATLLRHARAIARAY------GYDPGAVLLAALPFCGVFGFSTLLG-- 242
Query: 270 QCLLGGSTVVIRSKFSA 286
L GG+ +V F A
Sbjct: 243 -ALAGGAPLVCEPVFDA 258
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 67.6 bits (166), Expect = 4e-12
Identities = 28/76 (36%), Positives = 36/76 (47%)
Query: 205 NKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGG 264
+KP D IYTSGTTG PK ++TH + A + L+ D V + LPL H
Sbjct: 85 DKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQ 144
Query: 265 LLGIGQCLLGGSTVVI 280
LG L G+ V
Sbjct: 145 RLGEYLPLSSGARVNF 160
Score = 41.0 bits (97), Expect = 0.001
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-- 125
T+T+ ++ + R+A + G++ GD VA+ E +PE+V L + G V I
Sbjct: 5 TITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTS 64
Query: 126 --NQRQHILIHSIKVAECKAII 145
+ +IL S + +
Sbjct: 65 SPEEVAYILNDS----GARVVF 82
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 67.6 bits (166), Expect = 5e-12
Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 51/222 (22%)
Query: 64 GAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
G Y++ +VE+ + I + ++ GL+ GD + +F E +PE++ +V +
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
+ + + + E + D++ S
Sbjct: 61 YDTLGEEAIEYILNETEISIVFC------------DAVKVYSF----------------- 91
Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRY 242
EEL E+ K+ KP D LA I YTSGTTG PK ++TH + ++G
Sbjct: 92 ----EELEELGKKNKVPPTPP-KPED-LATIMYTSGTTGNPKGVMLTH-GNIVAGVAGIN 144
Query: 243 QT---GLTSDDVVYTTLPLYH-----------TAGGLLGIGQ 270
+ + DV + LPL H GG +G
Sbjct: 145 KIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYS 186
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 67.3 bits (165), Expect = 6e-12
Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI----NTNQR 128
QV D + RIA +S GL+ GD +A+ + E++ L + G V+ +
Sbjct: 11 QVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETI 70
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
+++L HS + KA+ G + +K +P ST
Sbjct: 71 RYVLEHS----DAKALFVGK--LDDWDAMKAGVPEGLP--------TIILFPYSTLKDHY 116
Query: 189 ELPEVSAK-SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
+ ++ A P + +P D +YTSGTTG PK +++ F A GLT
Sbjct: 117 KWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLT 176
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV 278
+D + + LPL H A ++ G L G+ V
Sbjct: 177 PNDRLLSYLPLAHIAERVIVEGGSLYSGAEV 207
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 66.6 bits (163), Expect = 9e-12
Identities = 114/445 (25%), Positives = 178/445 (40%), Gaps = 72/445 (16%)
Query: 69 TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
+TF ++E+ S A + ++ GL++GD VAL M +Y G+ + G++ +N
Sbjct: 48 VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPL 107
Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP---------GISLYAA-GT----- 171
L H + + KAI+ + + L +V P G L A GT
Sbjct: 108 YTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFV 167
Query: 172 -----RRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKA 225
R P+ LP L + +K + LA++ YT GTTG+ K
Sbjct: 168 VKYIKRLVPKYH-LPDAISFRSAL---HKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKG 223
Query: 226 AVMTH--VRAMFMAISGRYQTGLTS-DDVVYTTLPLYH----TAGGLLGIGQCLLGGSTV 278
A++TH + A Y L ++V T LPLYH T LL I LGG +
Sbjct: 224 AMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIE---LGGQNL 280
Query: 279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQ-- 336
+I + F K+ KY T + + LL E E S+K+ +G G+ Q
Sbjct: 281 LITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQA 340
Query: 337 VWEPFQKRFGLDRICEFYGATEGN----ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCD 392
V E + K G + E YG TE + N + D G++G PV
Sbjct: 341 VAERWVKLTG-QYLLEGYGLTECSPLVSVNPYDLDYYSGSIG---------LPV------ 384
Query: 393 PETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGD 452
P T + + DG +P EPG L + GY + + +++++ +
Sbjct: 385 PSTEIKLVDDDGNEVP--PGEPGELWV-----KGPQVMLGYWQRPEATDEVIKDGWLA-- 435
Query: 453 AAFNTGDILIKDKFQYFYFKDRTGD 477
TGDI + D+ + DR D
Sbjct: 436 ----TGDIAVMDEEGFLRIVDRKKD 456
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 64.9 bits (158), Expect = 3e-11
Identities = 97/414 (23%), Positives = 155/414 (37%), Gaps = 75/414 (18%)
Query: 82 ANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN----TNQRQHILIHSIK 137
A ++G+ +GD VAL M+ ++ + S +G V IN ++ +IL +
Sbjct: 41 AGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDA-- 98
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL---DEELPEVS 194
GA+L + E D+I + QA + L E+P +
Sbjct: 99 ---------GAKLL-LVDEEFDAIVALETPKIVIDAAAQA----DSRRLAQGGLEIPPQA 144
Query: 195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
A +PT D + +YTSGTT PK + ++ + +I GLT+ + +
Sbjct: 145 AVAPT---------DLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLV 195
Query: 255 TLPLYHT-AGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLA 313
PLYH A L GI +GG T+ I +F ++ T A M +L
Sbjct: 196 VGPLYHVGAFDLPGIAVLWVGG-TLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLT 254
Query: 314 VPEKPEDTQHSVKMMIGNGLRP--QVWEPFQKRFGLDRICEFYGATE--GNANLMNAD-- 367
VP++ S+ IG G + F + F R + YG TE LM A
Sbjct: 255 VPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGRE 314
Query: 368 -GKVGAVGY-IPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK--E 423
K+G+ G + ++ I I P K +C+ P + G K E
Sbjct: 315 IEKIGSTGRALAHVEIR------IADGAGRWLPPNMKGEICM----RGPKVTKGYWKDPE 364
Query: 424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
AE+ + + F +GD+ D+ + Y DR D
Sbjct: 365 KTAEAFYGDW---------------------FRSGDVGYLDEEGFLYLTDRKKD 397
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 64.6 bits (158), Expect = 4e-11
Identities = 51/199 (25%), Positives = 74/199 (37%), Gaps = 18/199 (9%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQR 128
+ D R+A+ G+ +GD VA+ P + G+ G V +NT +
Sbjct: 34 ETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDI 93
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYA-AGTRRKPQAKVLPSTTLLD 187
IL HS E K + E E + + P A+
Sbjct: 94 AFILNHS----EAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDY-- 147
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI---YTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
E+L ++ P P D+ I YTSGTTG PK V TH A A+ +
Sbjct: 148 EDL--LAGGDPDPLPIP--PDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEW 203
Query: 245 GLTSDDVVYTTLPLYHTAG 263
G+ V TLP++H G
Sbjct: 204 GMPDRPVYLWTLPMFHCNG 222
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 62.8 bits (153), Expect = 1e-10
Identities = 97/431 (22%), Positives = 149/431 (34%), Gaps = 139/431 (32%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
SNR+ANF + G++RGD V L + PE L K+G V T
Sbjct: 10 SNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTL----------- 58
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
L+ A +++D +R KP+A V T
Sbjct: 59 ------------LTPA--DLRDRF---------SRGKPKAIVADET-------------- 81
Query: 198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP 257
+ D + +TSGTTGLPK + THV +S Y GL D+
Sbjct: 82 --------RADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDI------ 127
Query: 258 LYH---TAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV----------AQYI 304
H ++ G +K + S+F+ TV +Y+
Sbjct: 128 --HLNISSPGW----------------AKHAWSSFFAPWNA-GATVFGINYPRFDARRYL 168
Query: 305 GEMCRY----LLAVP--------EKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRI 350
G + ++ A P + ++ + G L P+V E +K +GL I
Sbjct: 169 GALEKFGVTTFCAPPTVWRMFIQQDLAQYDVRLREAVSAGEPLNPEVIERVKKAWGLT-I 227
Query: 351 CEFYGATEGNANLMNADG---KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG-LC 406
+ YG TE A + N+ G K G++G +P Y V L+ D E + I +G +
Sbjct: 228 RDGYGQTETTAMIGNSPGQKVKPGSMGR----PLPGYRVVLL--DDE-GKEIPVTEGEIA 280
Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
+ G+ GY R Y + TGD +D+
Sbjct: 281 LDLGDRPIGL-------------MLGYMGDPEKTAAAFRGGY------YRTGDKAYRDED 321
Query: 467 QYFYFKDRTGD 477
Y +F R D
Sbjct: 322 GYLWFVGRADD 332
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 61.6 bits (149), Expect = 4e-10
Identities = 103/435 (23%), Positives = 173/435 (39%), Gaps = 56/435 (12%)
Query: 70 VTFQV-EDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN---T 125
+TF V D R AN+ + G+++GD VA+ + P+ V + G G + N T
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 126 NQRQHILIHS--IKVAECKAIIYGAELS-EALTEVKDSI----------PGISLYAAGTR 172
+ +H KV C +++ + ++ T+++ I P LY +
Sbjct: 110 ERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQK 169
Query: 173 RKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH- 230
++ V S + V + T P + LA + YT GTTG PK ++TH
Sbjct: 170 KQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHK 229
Query: 231 --VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASN 288
V M + Y ++VV LP +H G + ++ G +V+ KF
Sbjct: 230 NLVSNTLMGVQWLYNC-KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKM 288
Query: 289 FWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI-GNGLRP-QVWEPFQKRFG 346
++ K+ T+ + LL P E S++ I G+ P +V E F+ G
Sbjct: 289 VFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVTG 348
Query: 347 LDRICEFYGATEGN----ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNK 402
++ E YG TE + +N + G++G +P+ + ET E +
Sbjct: 349 -GKLVEGYGLTESSPVTHSNFLWEKRVPGSIG------VPWPDTEAMIMSLETGEALP-- 399
Query: 403 DGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILI 462
PG IG I + GY +K +L++ + H TGD+
Sbjct: 400 -----------PG-EIGEIV-VKGPQIMKGYWNKPEETAAVLQDGWLH------TGDVGY 440
Query: 463 KDKFQYFYFKDRTGD 477
D+ +FY KDR D
Sbjct: 441 MDEDGFFYVKDRKKD 455
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 60.9 bits (148), Expect = 7e-10
Identities = 70/325 (21%), Positives = 117/325 (36%), Gaps = 68/325 (20%)
Query: 74 VEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILI 133
+ + R A + G++ GD VAL M + ++G A +N + + +
Sbjct: 17 LAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIA 76
Query: 134 HSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
+ ++ + + +I A+L L + ++P G+++ + T P +
Sbjct: 77 YILEDSGARVLIAHADL---LHGLASALPAGVTVLSVPT---------PPEIAAAYRISP 124
Query: 193 VSAKSPTEDI------KKNKPSDKLA------YIYTSGTTGLPK----AAVMTHVRAMFM 236
P I + +P D IYTSGTTG PK AA A
Sbjct: 125 ALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAE 184
Query: 237 AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKY 296
+ GL T PLYH+A G+ LGG +V++ +F + ++
Sbjct: 185 QMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGG-VLVLQPRFDPEELLQLIERH 242
Query: 297 NCTVAQYIGEMCRYLLAVPEK--------------------PEDTQHSVKMMIGNGLRPQ 336
T + M LL +PE+ P D + + MI +
Sbjct: 243 RITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVK---RAMI------E 293
Query: 337 VWEPFQKRFGLDRICEFYGATEGNA 361
W P I E+YG+TE A
Sbjct: 294 WWGPV--------IYEYYGSTESGA 310
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 60.3 bits (147), Expect = 9e-10
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 214 IYTSGTTGLPKAAVMTHVRAMFM--AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQC 271
I+TSG+TG PKA V H + A GLT DD +LPL+H GL + +
Sbjct: 83 IFTSGSTGKPKAVV--HTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV-SGLAIVMRS 139
Query: 272 LLGGSTVVIRSKFSA 286
LL G +V+ KF A
Sbjct: 140 LLAGGALVLPDKFDA 154
Score = 47.6 bits (114), Expect = 9e-06
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 69 TVTFQVEDH-SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
++TFQ D +++A + G++RGD VAL + E++ ++L L ++G V +N
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60
Query: 128 RQH 130
Q
Sbjct: 61 PQE 63
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 60.1 bits (146), Expect = 1e-09
Identities = 100/431 (23%), Positives = 151/431 (35%), Gaps = 117/431 (27%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFINTNQRQHI 131
++++ S R AN S G+ +G+ V + PE YV LG K+G V + +
Sbjct: 5 ELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAA-LGTLKLGAVYGPLFSA----- 58
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
+G E ++D + +AKVL +T L E
Sbjct: 59 --------------FGPE------PIRDRL-----------ELGEAKVLITTPELYERTD 87
Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFM-AISGRYQTGLTSDD 250
P D +TSGTTG PK + H RA+ + RY L DD
Sbjct: 88 ---------------PEDPALLHFTSGTTGKPKGVLHVH-RAVVAHYATARYVLDLRPDD 131
Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVI-RSKFSASNFWKDCIKYNCTV--------- 300
V + T G GI LL G T+V+ +F A ++ + TV
Sbjct: 132 VYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALR 191
Query: 301 ----------AQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRI 350
A+Y R++ +V G L P+V +K G+ I
Sbjct: 192 MLMRAGPELAARYDLSSLRHIASV---------------GEPLNPEVVVWGEKVLGM-PI 235
Query: 351 CEFYGATEGN----ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC 406
+ + TE AN K G++G +P +I+ R+ DGL
Sbjct: 236 HDTWWQTETGAIMIANYPGIPVKPGSMGR----PLPGIEAAVIE---------RDGDGLT 282
Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
+ G L +K S F GY + D + TGD+ +D+
Sbjct: 283 PVTGPGQVGEL--ALKPGWP-SMFRGYLGNEERYASSFV------DGWYLTGDLAYRDED 333
Query: 467 QYFYFKDRTGD 477
YF+F R D
Sbjct: 334 GYFWFVGRADD 344
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 59.9 bits (146), Expect = 1e-09
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 41/192 (21%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
T+T+ ++ +N IA ++ G+ GD VA+ M E + LG+ G I+ +Q
Sbjct: 12 TLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQ 71
Query: 128 ----RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
R IL A +A LT+ + P P
Sbjct: 72 PAERRAAIL----ARAGARA---------VLTDPGLAQPEE---------------APDL 103
Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAM--FMAISG 240
++ ++ +A+SP + P D LAY I+TSG+TG PK ++TH A+ + ++
Sbjct: 104 LVVADD--AAAAESPAPPPPRVDPDD-LAYVIFTSGSTGEPKGVMITHRAAVNTILDVNR 160
Query: 241 RYQTGLTSDDVV 252
R+ G+ D V
Sbjct: 161 RF--GVGPADRV 170
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 59.8 bits (145), Expect = 2e-09
Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%)
Query: 93 GD-AVALFMEGQPEYVCMWLGLSKIGVVA--AFI-NTNQRQHI--LIHSIKVAECKAIIY 146
GD AV LF G P+YV + G GV+A A+ + +R H L+ I AE + ++
Sbjct: 64 GDRAVLLFPSG-PDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLT 122
Query: 147 GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNK 206
A+L ++L + A L LD L E +
Sbjct: 123 VADLRDSLLQ------------MEELAAANAPELLCVDTLDPALAE-------AWQEPAL 163
Query: 207 PSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG 263
D +A++ YTSG+T LPK ++H + A I + L DDV+ + LPLYH G
Sbjct: 164 QPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMG 223
Query: 264 GLLGIGQCLLGGSTVVIRS 282
+ G+ Q + G V+ S
Sbjct: 224 LIGGLLQPIFSGVPCVLMS 242
Score = 40.2 bits (94), Expect = 0.003
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 34/185 (18%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN-----Q 127
+++ +NR+A + +G+ V L +E E V L + K G A++ + +
Sbjct: 2218 ELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAG--GAYVPLDPEYPLE 2275
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
R H +I + ++ L EAL E+ + L +
Sbjct: 2276 RLHYMIEDSGIG---LLLSDRALFEALGELPAGVARWCL--------------------E 2312
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVR-AMF-MAISGRYQTG 245
++ ++A S + P + IYTSG+TG PK V++H AM A+ R+ G
Sbjct: 2313 DDAAALAAYSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERF--G 2370
Query: 246 LTSDD 250
+ +DD
Sbjct: 2371 MRADD 2375
Score = 39.0 bits (91), Expect = 0.007
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 209 DKLAY-IYTSGTTGLPKAAVMTHVRAM 234
D LAY IYTSG+TGLPK VM R M
Sbjct: 3869 DNLAYVIYTSGSTGLPK-GVMVEQRGM 3894
Score = 38.2 bits (89), Expect = 0.011
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 209 DKLAY-IYTSGTTGLPKAAVMTHVRAMFMAISGRYQ-----TGLTSDDVVYTTLPL 258
D LAY IYTSG+TG PK TH A++ R Q L DV+ P+
Sbjct: 1273 DNLAYVIYTSGSTGQPKGVGNTHA-----ALAERLQWMQATYALDDSDVLMQKAPI 1323
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 58.6 bits (143), Expect = 3e-09
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 207 PSDKLAY-IYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVV--YTTLPLYHT 261
P D LAY IYTSG+TG PK ++ H + + + RY GLT+ D V + + +
Sbjct: 92 PDD-LAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERY--GLTAGDRVLQFASFSFDAS 148
Query: 262 AGGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP 318
+ LL G+T+V+ + ++ TV + + R LL E
Sbjct: 149 VWEIFP---PLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALEPA 205
Query: 319 EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
S++++I G L ++ +++ F R+ YG TE
Sbjct: 206 A--LPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTE 245
Score = 39.3 bits (93), Expect = 0.004
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
++T+ ++ + +NR+A++ +++G+ GD VA+ +E PE V L + K G AA++
Sbjct: 12 SLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKAG--AAYV 65
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 57.7 bits (140), Expect = 6e-09
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 48/163 (29%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
T T+ ++ NR+A+ + GL +GD V ++M PE V L ++KIG +A I +
Sbjct: 7 TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGF 66
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+ ++ AE K +I A G R+ + L D
Sbjct: 67 GPDAVATRLQDAEAKVLI---------------------TADGFLRRGKR-----VDLKD 100
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH 230
D IYTSGTTG PK V TH
Sbjct: 101 ---------------------DPAMIIYTSGTTGKPKGTVHTH 122
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 57.2 bits (139), Expect = 7e-09
Identities = 51/221 (23%), Positives = 81/221 (36%), Gaps = 54/221 (24%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
Q+ +++A F +G+ G VAL + PE + +L L + G +N Q L
Sbjct: 33 QLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNP-QLPQPL 91
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
+ ++ + + L T + + L Q + L + TL
Sbjct: 92 LE--ELLPSLTLDFALVLEGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTL------- 142
Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH---------VRAMFMAISGRYQ 243
TSG+TGLPKAAV T V ++
Sbjct: 143 -----------------------TSGSTGLPKAAVHTAQAHLASAEGVLSLM--PFTAQD 177
Query: 244 TGLTSDDVVYTTLPLYHTAGGLLGI-GQCLLGGSTVVIRSK 283
+ L S LPL+H +G GI + L G+T+V+R K
Sbjct: 178 SWLLS-------LPLFHVSG--QGIVWRWLYAGATLVVRDK 209
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 57.3 bits (139), Expect = 1e-08
Identities = 109/443 (24%), Positives = 176/443 (39%), Gaps = 74/443 (16%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
++++ S +A + +S+GL +G VA+ M +Y + + G V +N L
Sbjct: 53 ELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPREL 112
Query: 133 IHSIKVAECKAII----YGAELSEAL--TEVKDSIP---GISLYAAGT-----RRKPQAK 178
H +K + +AI+ + + + L T VK + G L G R+ +
Sbjct: 113 EHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKM 172
Query: 179 V----LPSTTLLDEELPEVSAKSPTEDIKKNKPS-DKLAYI-YTSGTTGLPKAAVMTH-- 230
V LP ++ L E + ++ K K D +A++ YT GTTG+ K A + H
Sbjct: 173 VPAWSLPGHVRFNDALAEGARQT----FKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRN 228
Query: 231 VRAMFMAISGRYQTGLTS---DDVVYT--TLPLYH----TAGGLLGIGQCLLGGSTVVIR 281
+ A + + Q D + LPLYH T GLLG+ GG ++I
Sbjct: 229 IVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMR---TGGRNILIP 285
Query: 282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQ--VWE 339
+ F K+ KY + + + LL P+ + + + G G+ Q V E
Sbjct: 286 NPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAE 345
Query: 340 PFQKRFGLDRICEFYGATE----GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPET 395
+ + G I E YG +E N ++A G +G +P P T
Sbjct: 346 RWLEMTGCP-ITEGYGLSETSPVATCNPVDATEFSGTIG------LPL---------PST 389
Query: 396 SEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA 454
IR+ DG +P EPG I I R GY ++ K++ D
Sbjct: 390 EVSIRDDDGNDLPLG--EPGEICI------RGPQVMAGYWNRPDETAKVM-----TADGF 436
Query: 455 FNTGDILIKDKFQYFYFKDRTGD 477
F TGD+ + D+ Y DR D
Sbjct: 437 FRTGDVGVMDERGYTKIVDRKKD 459
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 56.9 bits (138), Expect = 1e-08
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 30/191 (15%)
Query: 89 GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAII-YG 147
GL +G VA++ E + E++ G+ +VAA + N + L ++++ ECKAI+ G
Sbjct: 142 GLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG 201
Query: 148 AELSEALTEVK------------DSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
+ L +K DS+P S+ G R ++ T ++ + S
Sbjct: 202 KNVPNLLRLMKSGGMPNTTIIYLDSLPA-SVDTEGCR------LVAWTDVVAKGHSAGSH 254
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQT--GLTSDD 250
I +N D LA I YTSGTTG PK + TH + A +A+ R G +D
Sbjct: 255 HPLN--IPENN--DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEED 310
Query: 251 VVYTT-LPLYH 260
Y + LPL H
Sbjct: 311 ETYCSYLPLAH 321
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 56.5 bits (137), Expect = 2e-08
Identities = 72/302 (23%), Positives = 116/302 (38%), Gaps = 94/302 (31%)
Query: 202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTH------VRAMFMAISGRYQTGLTSDDVVYTT 255
KP D I++SG+ G PK +++H + + L +DDV+ ++
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF------NLRNDDVILSS 829
Query: 256 LPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR-----Y 310
LP +H+ G + + LL G VV + T A I ++
Sbjct: 830 LPFFHSFGLTVTLWLPLLEGIKVVYH--------------PDPTDALGIAKLVAKHRATI 875
Query: 311 LLAVPE-----------KPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGAT 357
LL P P S+++++ L+P+V + F+++FG+ RI E YGAT
Sbjct: 876 LLGTPTFLRLYLRNKKLHPLMFA-SLRLVVAGAEKLKPEVADAFEEKFGI-RILEGYGAT 933
Query: 358 E----GNANLMN--ADG-------KVGAVGY-IPYIAIPFYPVGLIKCDPETSEPIRNKD 403
E + NL + A K G+VG +P +A+ DPET E
Sbjct: 934 ETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRI-------VDPETFE------ 980
Query: 404 GLCIPCKAEEPG-ILIG----MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTG 458
E G ILIG M GY ++++++ G + TG
Sbjct: 981 ----ELPPGEDGLILIGGPQVM----------KGYLGDPEKTAEVIKDIDGIG--WYVTG 1024
Query: 459 DI 460
D
Sbjct: 1025 DK 1026
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 56.0 bits (136), Expect = 2e-08
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 34/167 (20%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN- 126
++T+ ++ + +NR+A +++G+ GD VAL +E PE V L + K G ++
Sbjct: 12 SLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAY 71
Query: 127 --QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
+R ++ +DS + L +A LP
Sbjct: 72 PAERLAFML------------------------EDSGARVLLTDESLAPLARADQLPLVI 107
Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH 230
L +E E + D LAY+ YTSG+TG PK + H
Sbjct: 108 LEEELDAEDAGPPAPA----VDADD-LAYVMYTSGSTGRPKGVAVPH 149
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 56.2 bits (136), Expect = 2e-08
Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 48/201 (23%)
Query: 89 GLQRGDAVALFMEGQPEYV-----CMWLGL--------SKIGVVAAFINTNQRQHILIHS 135
GL+ GD VAL E ++V C + GL G ++I +
Sbjct: 70 GLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGM------ 123
Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
+ A+ AII EL + E P + + K LP D LP +
Sbjct: 124 LASAQPAAIITPDELLPWVNEATHGNPLL---HVLSHA--WFKALPEA---DVALPRPTP 175
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT--SDDVV 252
D +AY+ Y+SG+T P+ ++TH RA+ + GL D
Sbjct: 176 -------------DDIAYLQYSSGSTRFPRGVIITH-RALMANLRAISHDGLKVRPGDRC 221
Query: 253 YTTLPLYHTAGGLLGIGQCLL 273
+ LP YH GL+G LL
Sbjct: 222 VSWLPFYHDM-GLVG---FLL 238
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 55.9 bits (135), Expect = 2e-08
Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN----TNQR 128
Q+ D + +++ G++ GD VA ++ W G+ IG + +N Q
Sbjct: 44 QIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQI 103
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTL--- 185
I+ H AE + +I L ++ D +P + Y T A +P TTL
Sbjct: 104 AWIINH----AEDRVVITDLTFVPILEKIADKLPSVERYVVLT----DAAHMPQTTLKNA 155
Query: 186 --LDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF---MAISG 240
+E + E + +N + YTSGTTG PK + +H R+ + +
Sbjct: 156 VAYEEWIAEADGDFAWKTFDENTAA---GMCYTSGTTGDPKGVLYSH-RSNVLHALMANN 211
Query: 241 RYQTGLTSDDVVYTTLPLYH 260
G ++ D + +PL+H
Sbjct: 212 GDALGTSAADTMLPVVPLFH 231
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 55.4 bits (134), Expect = 3e-08
Identities = 86/418 (20%), Positives = 148/418 (35%), Gaps = 94/418 (22%)
Query: 70 VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQR 128
TF Q++D SNR+AN + G++RGD V +++ PE L + K+G V+ ++
Sbjct: 7 YTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFG 66
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
+ H ++ + + ++ T+ D P I +Y +GT P+ + LL
Sbjct: 67 PDAVEHRLRDSGARVLV---------TDGSDD-PAILIYTSGTTGPPKGALHGHRVLLG- 115
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS 248
+ P +L + P+
Sbjct: 116 ----------------HLPGVELYFEL------APR-----------------------P 130
Query: 249 DDVVYTTLPLYHTAGGLLGI-GQCLLGGSTVVI--RSKFSASNFWKDCIKYNCTVAQYIG 305
DV +T + GGLL + L G VV +F + +Y T A
Sbjct: 131 GDVFWTPAD-WAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPP 189
Query: 306 EMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL 363
+ + V + ++ + G L ++ E + GL + EFYG TE N +
Sbjct: 190 TALKMMRRVGSERARYDLRLRAVASGGESLGEELLEWARDELGLT-VNEFYGQTEANLVV 248
Query: 364 MNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIG 419
N + G++G +P + V ++ D + G I K +P + +G
Sbjct: 249 GNCAALGPARPGSMGK----PVPGHEVAVV--DDAGRPVPPGEVGE-IAVKRPDPVMFLG 301
Query: 420 MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
A+ K GD TGD+ +D Y +FK R D
Sbjct: 302 YWNNPE------------ATAAKF------AGD-WLLTGDLGRRDADGYLWFKGRADD 340
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 55.4 bits (134), Expect = 3e-08
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 18/212 (8%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
+R+A G+ RGD V+ + E+ ++L S+IG V + R+ L +K
Sbjct: 65 VDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLK 124
Query: 138 VAECKAIIY-----GAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEE-- 189
AE K ++ G + + ++ +P + + G + L T ++E
Sbjct: 125 HAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPAWEQEPD 184
Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM--FMAISGRYQTGLT 247
P + A+ + P D IYTSGTTG PK + T M + + R GL
Sbjct: 185 APAILARL------RPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAER--LGLG 236
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV 279
+DDV+ P+ H G + G+ ++ G+T V
Sbjct: 237 ADDVILMASPMAHQTGFMYGLMMPVMLGATAV 268
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 54.6 bits (132), Expect = 6e-08
Identities = 47/197 (23%), Positives = 70/197 (35%), Gaps = 38/197 (19%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYV-CMW---LGLSKIGVV-------AAFINTNQR 128
RI ++ GL+ GD+V L +E ++V W LG G V + N
Sbjct: 51 RILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLG----GFVPVPVAVPPTYDEPNAA 106
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
L + ++ I+ A L AL L
Sbjct: 107 VAKLRNIWELLGSPVILTDAALVAAL-------------------AGLRTRAGLEALRVL 147
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGL 246
+ E+ + P + +P D + TSG+TG+PK V+TH + A G
Sbjct: 148 AIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVN--GF 205
Query: 247 TSDDVVYTTLPLYHTAG 263
T DDV +PL H G
Sbjct: 206 TPDDVSLNWMPLDHVGG 222
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 54.8 bits (132), Expect = 6e-08
Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 12/180 (6%)
Query: 89 GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148
G+ V M E++ + ++ +G V +N ++H I AE + I+
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119
Query: 149 ELSEALTEVKDSIPGIS---LYAAGTRRKPQAKVLPSTTLLDEE--LPEVSAKSPTEDIK 203
L+E L E+ P + A + + E L S ++
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELD 179
Query: 204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF---MAISGRYQTGLTSDDVVYTTLPLYH 260
+ + A Y++GTTG PK V +H R+++ +++ +T + +P+YH
Sbjct: 180 ETTAA---AICYSTGTTGAPKGVVYSH-RSLYLQSLSLRTTDSLAVTHGESFLCCVPIYH 235
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 54.1 bits (130), Expect = 8e-08
Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 25/297 (8%)
Query: 79 NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
+RIA G+ RGD V+ + + E+ ++L ++IG V + R+ L +
Sbjct: 64 DRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNH 123
Query: 139 AECKAIIY-----GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEV 193
A+ K + G + + E++ +P + + T ++ P+
Sbjct: 124 ADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDA 183
Query: 194 SAKSPTEDIKKNKPS--DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ-TGLTSDD 250
+A + +PS D IYTSGTTG PK VM +F I + L D
Sbjct: 184 AAI-----LAGPRPSPDDVTQLIYTSGTTGEPK-GVMHTANTLFSNIHPYAERLELGGGD 237
Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASN----FWKDCIKYNCTVAQYIGE 306
V+ P+ H G + G+ L+ +T V++ ++ + + + + ++ +
Sbjct: 238 VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTD 297
Query: 307 MCRYLLAVPE--KPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNA 361
+CR AV E P + + + G + + E + G I +G TE A
Sbjct: 298 LCR---AVKESGAPVPSLFTF-LCAGAPIPGILVERAWELLGA-LIVSAWGMTENGA 349
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 54.2 bits (131), Expect = 1e-07
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 27/188 (14%)
Query: 57 IREVPMTGAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK 115
I + P+TG K T T+ ++ D +R+A + G+ +GD V ++M PE V L ++
Sbjct: 62 IYDSPVTGT-KRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACAR 120
Query: 116 IGVVAAFINTNQRQHILIHSIKVAECKAII---YGAE----------LSEALTEVKDSIP 162
IG + + + L I A+ K I+ +G E L +AL +
Sbjct: 121 IGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPH 180
Query: 163 GISLYAAGTRRKPQAKV--LPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGT 219
+ + + Q P L EL + ++ P YI YTSGT
Sbjct: 181 KVLIL-----NRGQVPAPLKPGRDLDWAELMAKARPVDCVPVESTDPL----YILYTSGT 231
Query: 220 TGLPKAAV 227
TG PK V
Sbjct: 232 TGKPKGVV 239
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 53.7 bits (130), Expect = 1e-07
Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 55/183 (30%)
Query: 79 NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
R AN KS G+++GD VA++M PE L ++IG IHS
Sbjct: 89 CRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGA--------------IHS--- 131
Query: 139 AECKAIIYGAELSEALTE-VKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE---ELPEVS 194
+++ +EAL + + D+ + + A G R KV+P ++DE + P V
Sbjct: 132 -----VVFAGFSAEALADRINDAKSKLLITADGGYRG--GKVIPLKEIVDEALEKCPSVE 184
Query: 195 -------AKSPT-----------EDIKKNKPS---------DKLAYIYTSGTTGLPKAAV 227
+ + K P D L +YTSG+TG PK V
Sbjct: 185 KVIVVKRTGGEVPMVEGRDVWWHDLMAKASPYCEPEPMDAEDPLFILYTSGSTGKPKGVV 244
Query: 228 MTH 230
T
Sbjct: 245 HTT 247
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 53.5 bits (129), Expect = 2e-07
Identities = 98/454 (21%), Positives = 163/454 (35%), Gaps = 82/454 (18%)
Query: 54 VRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLG 112
V + P + T T+ ++ R A ++ G++ GD VA+ + P+++ +
Sbjct: 42 VARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA 101
Query: 113 LSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-----GISLY 167
+ ++G V N H L H + + I +++ + ++ + P +++
Sbjct: 102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMI 161
Query: 168 AAGTRRKPQAKVLPSTTLLD---------------EELPEVSAKSPTEDIKKNKP---SD 209
AA + A LP L E L V A + + P D
Sbjct: 162 AAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETL--VDAAIGGDGSDVSHPRPTPD 219
Query: 210 KLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGR-YQTGL-TSDDVVYTTLPLYHTAGGLL 266
+A I YTSGTTG PK A +TH A G+ + GL + V LP++H G L
Sbjct: 220 DVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTL 279
Query: 267 GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP----------E 316
+ + G +V+ D I + +L VP E
Sbjct: 280 CLTLAVSIGGELVLLPAPDI-----DLI-----LDAMKKHPPTWLPGVPPLYEKIAEAAE 329
Query: 317 KPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN----ANLMNADGKV 370
+ V+ L E ++K G + E YG TE + N M+ D +
Sbjct: 330 ERGVDLSGVRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTETSPIIVGNPMSDDRRP 388
Query: 371 GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF 430
G VG +PF P+T I + + E G L+ R F
Sbjct: 389 GYVG------VPF---------PDTEVRIVDPEDPDETMPDGEEGELL-----VRGPQVF 428
Query: 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKD 464
GY ++ K D F TGD+++ +
Sbjct: 429 KGYWNRPEETAKSFL------DGWFRTGDVVVME 456
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 53.1 bits (128), Expect = 2e-07
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 214 IYTSGTTGLPKAAVMTHVRAMFMAISGRYQT-GLTSDDVVYTTLPLYHTAGGLLGIGQCL 272
+YTSGTTG PK V++ RA+ + + T+DDV+ LPL+H G +LG+ L
Sbjct: 134 VYTSGTTGPPKGVVLSR-RAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPL 192
Query: 273 LGGSTVVIRSKFS 285
G+ V + +
Sbjct: 193 RIGNRFVHTGRPT 205
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 53.6 bits (129), Expect = 2e-07
Identities = 59/294 (20%), Positives = 100/294 (34%), Gaps = 35/294 (11%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
++ +NR+A+ + G+ V + +E E V L + K G ++ Q L
Sbjct: 542 ELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRL 601
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
+ + + + ++ + L L V + + LDE
Sbjct: 602 AYMLDDSGVRLLLTQSHLLAQL-PVPAGLRSL--------------------CLDEPADL 640
Query: 193 VSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAM---FMAISGRYQTGLTS 248
+ + + D LAY IYTSG+TG PK ++H A+ I+ R Q L +
Sbjct: 641 LCG-YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISH-GALANYVCVIAERLQ--LAA 696
Query: 249 DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIG 305
DD + G G L G+T+ + A F TV + +
Sbjct: 697 DDSMLMVSTFAFDLGVTELFGA-LASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVP 755
Query: 306 EMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEP-FQKRFGLDRICEFYGATE 358
+ LL + G L+ + G R+ YG TE
Sbjct: 756 SHLQALLQASRVALPRPQRALVCGGEALQVDLLARVRALGPGA-RLINHYGPTE 808
Score = 53.6 bits (129), Expect = 2e-07
Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 21/214 (9%)
Query: 157 VKDSIPGISL---YAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY 213
++DS GI L + R P L S +LD+E + S + P LAY
Sbjct: 1667 IEDS--GIELLLTQSHLQARLPLPDGLRSL-VLDQEDDWLEGYSDSNPAVNLAP-QNLAY 1722
Query: 214 -IYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ 270
IYTSG+TG PK A H + A YQ L++ DVV + + +
Sbjct: 1723 VIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQ--LSAADVVLQFTS-FAFDVSVWELFW 1779
Query: 271 CLLGGSTVVIRSKFSASNFWKDCIKYNC----TVAQYIGEMCRYLLAVPEKPEDTQHSVK 326
L+ G+ +VI A + I+ T ++ M + LL + E+ E S++
Sbjct: 1780 PLINGARLVIAP-PGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPL-SLR 1837
Query: 327 MMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
++ G L + P+ +R + YG TE
Sbjct: 1838 RVVCGGEALEVEALRPWLERLPDTGLFNLYGPTE 1871
Score = 35.1 bits (81), Expect = 0.11
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 173 RKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH 230
+ P + TL +L S +P+ + + LAY IYTSG+TG PK + H
Sbjct: 3205 QLPAPAGDTALTLDRLDLNGYSENNPSTRVM----GENLAYVIYTSGSTGKPKGVGVRH 3259
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 53.2 bits (128), Expect = 2e-07
Identities = 62/249 (24%), Positives = 92/249 (36%), Gaps = 64/249 (25%)
Query: 64 GAYKYTVTFQVEDHSNRIANFFKSKGL-----QRGDAVALFMEGQPEYVCMWLGLSKIGV 118
G Y++ QV + R+ NF + GL + + VA+F + + E WL I +
Sbjct: 102 GEYEWITYGQVFE---RVCNF--ASGLVALGHNKEERVAIFADTRAE----WL----IAL 148
Query: 119 VAAFINTNQRQHI-------------LIHSIKVAECKAIIYG-------AELSEALTEVK 158
F RQ+I L HS+ E +I ++S L VK
Sbjct: 149 QGCF-----RQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVK 203
Query: 159 DSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPS-DKLAYI-YT 216
I + G + T+ EV + + PS + +A I YT
Sbjct: 204 RVI---YMDDEGVDSDSSLSGSSNWTV--SSFSEVEKLGKENPVDPDLPSPNDIAVIMYT 258
Query: 217 SGTTGLPKAAVMTHVRAMFMAISGRYQT--GLTSDDVVYTTLPLYH-----------TAG 263
SG+TGLPK +MTH + ++G L +DV LPL H G
Sbjct: 259 SGSTGLPKGVMMTH-GNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVG 317
Query: 264 GLLGIGQCL 272
+G G L
Sbjct: 318 AAIGYGSPL 326
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 52.9 bits (127), Expect = 3e-07
Identities = 69/275 (25%), Positives = 108/275 (39%), Gaps = 33/275 (12%)
Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL 266
P D + +TSGTTG PK ++H + +++ G DDV T PL H GGL
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI-GGLS 229
Query: 267 GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIG--EMCRYLLAVPEKPEDTQ-- 322
L+ G+ V+ KF A IK + V I M L+++ K +
Sbjct: 230 SALAMLMVGACHVLLPKFDAKAAL-QAIKQHN-VTSMITVPAMMADLISLTRKSMTWKVF 287
Query: 323 HSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL--MNADGKVGAVGYIPY 378
SV+ ++ G L ++ +K F ++ YG TE ++L M + P
Sbjct: 288 PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTL--------HDPT 339
Query: 379 IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN------- 431
+ P L + S + G+C+ A + IG+ + SR
Sbjct: 340 LESP--KQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVML 397
Query: 432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
GY + + +L N D +TGDI DK
Sbjct: 398 GYWGQNSETASVLSN-----DGWLDTGDIGWIDKA 427
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 52.7 bits (127), Expect = 3e-07
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 209 DKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS--GRYQTGLTSDDVVYTTLPLYHTAGGLL 266
D + +TSGTTG PKAAV+TH + F+ + G T D PL H A G+
Sbjct: 164 DPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGA-GIH 222
Query: 267 GIGQCLLGGSTVVIRS-KFSASNFWK 291
+ Q G +TV++ S +F + W
Sbjct: 223 QLCQVARGAATVLLPSERFDPAEVWA 248
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 52.2 bits (125), Expect = 4e-07
Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 28/223 (12%)
Query: 89 GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148
G+++GD V L + + ++L + +G + +N S + E K +
Sbjct: 88 GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNP---------SSSLGEIKKRVVDC 138
Query: 149 ELSEALTEVKDS-------IPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED 201
+ A T ++ +P I + + + L+ E+ + K
Sbjct: 139 SVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKED-FDFVPKPVI-- 195
Query: 202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTH-----VRAMFMAISGRYQTGLTSDDVVYTTL 256
K D A +Y+SGTTG K V+TH + +F+ SD+V L
Sbjct: 196 ----KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAAL 251
Query: 257 PLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCT 299
P++H G L + L GST+V+ +F AS+ K ++ T
Sbjct: 252 PMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVT 294
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 51.7 bits (123), Expect = 5e-07
Identities = 77/434 (17%), Positives = 142/434 (32%), Gaps = 61/434 (14%)
Query: 64 GAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
++ T +V + R+ ++ G+ GD VA ++ + + +G V
Sbjct: 21 EVHRTT-YAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 79
Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRR-KPQAKVLPS 182
N + + + AE K +++ L + K
Sbjct: 80 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA------IRGELKTVQHFVVMDEKAPEG 133
Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF--MAISG 240
+E L E + + YT+GTTGLPK V +H + +A S
Sbjct: 134 YLAYEEALGEEADPVRVPE------RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL 187
Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV 300
T L+ DVV +P++H L L+G V+ + ++ + T
Sbjct: 188 VDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVT- 246
Query: 301 AQYIGEMCRYLLAVPEKPEDTQHS----VKMMIGNGLRPQVWEPFQKRFGLDRICEFYGA 356
+ + LA+ + E T H ++++G P+ + + YG
Sbjct: 247 --FTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIAR-FERMGVEVRQGYGL 303
Query: 357 TEGNANLMNADGKVGAVGYIP-YIAIPFYPVGLIKCDPETSEPIRNKDGL---------C 406
TE V ++ E ++ K GL
Sbjct: 304 TE-------TSPVVVQNFVKSHLESLS----------EEEKLTLKAKTGLPIPLVRLRVA 346
Query: 407 IPCKAEEP--GILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIK 463
P G +G ++ + GY +++A+ + + + F TGDI +
Sbjct: 347 DEEGRPVPKDGKALGEVQ-LKGPWITGGYYGNEEATRSALTPDGF------FRTGDIAVW 399
Query: 464 DKFQYFYFKDRTGD 477
D+ Y KDR D
Sbjct: 400 DEEGYVEIKDRLKD 413
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 51.1 bits (122), Expect = 7e-07
Identities = 95/423 (22%), Positives = 168/423 (39%), Gaps = 61/423 (14%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
VT+ +V + R A +S GL++G V + + EY + LG+ G V + N
Sbjct: 55 AVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTA 114
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+ + + A K I+ + + +P I L + +
Sbjct: 115 LESEIKKQAEAAGAKLIVTNDTNYGKVKGL--GLPVIVL----------GEEKIEGAVNW 162
Query: 188 EELPEVSAK-SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG- 245
+EL E + + T D ++ +D A ++SGTTG+ K ++TH + S + G
Sbjct: 163 KELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGP 222
Query: 246 -LTSDDVVYTTLPLYHTAGGLLGIG-QCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
+ V +P +H G+ GI L VV+ S+F F I + A
Sbjct: 223 EMIGQVVTLGLIPFFHIY-GITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPI 281
Query: 304 IGEMCRYLLAVPEKPEDTQHSVK----MMIGNGLRPQVWEPFQKRFGLDRICEFYGATE- 358
+ + L+ P E +K M L P++ F+ +F ++ E YG TE
Sbjct: 282 VPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEH 341
Query: 359 -------GNANLMNADGKVGAVGYI-PYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCIP 408
G+ + K +VG+I P + + F DP+T + +N G LC+
Sbjct: 342 SCITLTHGDPEKGHGIAKKNSVGFILPNLEVKF-------IDPDTGRSLPKNTPGELCV- 393
Query: 409 CKAEEPGILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSH-GDAAF--NTGDILIKD 464
R++ GY +K+ +++ I + + H GD + + GDI I D
Sbjct: 394 ----------------RSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVD 437
Query: 465 KFQ 467
+ +
Sbjct: 438 RIK 440
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 51.1 bits (123), Expect = 7e-07
Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 41/188 (21%)
Query: 199 TEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTT 255
T+ D +A+I ++SG+TG PK ++TH + AI +TS+DV +
Sbjct: 96 TDRDSLLSLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEA--AEITSEDVFLSW 153
Query: 256 LPLYHTAG--------GLLGIGQCLLGGSTVVIRSKFSASNFWKDCI-KYNCTVAQYIGE 306
+PL H G LGI Q L+ + R W D ++ T+
Sbjct: 154 MPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRR-----PLLWLDKASQHRATI------ 202
Query: 307 MC------RYLL--AVPEKPEDTQHSVKMMIGNGLRPQVW---EPFQKR---FGLDRICE 352
+ +YLL EK D S +I NG P E F ++ FGL
Sbjct: 203 LSSPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAM 262
Query: 353 F--YGATE 358
+ YG E
Sbjct: 263 YPVYGLAE 270
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 51.1 bits (122), Expect = 8e-07
Identities = 68/284 (23%), Positives = 105/284 (36%), Gaps = 90/284 (31%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
T+T+ Q+ N A+ ++ G+ RGD V ++M E V L ++IG
Sbjct: 83 TLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGA--------- 133
Query: 128 RQHILIHSIKVAECKAIIYGAELSEAL-TEVKDSIPGISLYA-AGTRRKPQAKVLPSTTL 185
IHS +++G S +L + D+ P + + A AG R KV+P L
Sbjct: 134 -----IHS--------VVFGGFASHSLALRIDDATPKLIVSADAGMR---GGKVIPYKPL 177
Query: 186 LDEELPE-----------------------------------VSAKSPTEDIKKNKPSDK 210
LD + E A+ P E ++ N+PS
Sbjct: 178 LDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPS-- 235
Query: 211 LAYI-YTSGTTGLPKA----------AVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLY 259
YI YTSGTTG PK A+ + A+F +G Q ++ DV + Y
Sbjct: 236 --YILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAG--QVMFSASDVGWVVGHSY 291
Query: 260 HTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
LL G +TV+ + D + V +Y
Sbjct: 292 IVYAPLLA------GAATVL----YEGLPTNPDPGVWWSIVERY 325
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 51.3 bits (123), Expect = 8e-07
Identities = 57/298 (19%), Positives = 110/298 (36%), Gaps = 25/298 (8%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
T+T+ ++++ S+ +A ++ + V + +V L ++IG +NT+
Sbjct: 68 TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSF 127
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
L + +IY E S + P +++ T
Sbjct: 128 AGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQ------------ATRIVAWTDEDH 175
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
+ EV + + + TSGTTG PK A + + + +T
Sbjct: 176 DLTVEVLIAAHAGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWR 235
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGS---TVVIRSKFSASNFWKDCIKYNCTVAQYI 304
+++ P++H G Q +L S T+V R +F ++ T +
Sbjct: 236 AEEPTVIVAPMFHA----WGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVV 291
Query: 305 GEMCRYLLAVPEKPED--TQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE 358
M ++ +P + + + S++ +G +RP V F +FG D I Y ATE
Sbjct: 292 PVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIYNNYNATE 348
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 51.1 bits (123), Expect = 9e-07
Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R+A+ +G+ RGD VA+ + P V G+ G V +NT + ++
Sbjct: 55 RLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHG 114
Query: 140 ECKAII----YGAELSEALTEVKDSIPGI-----SLYAAGTRRKPQAKVLPSTTLLDEEL 190
E K +I + EAL + P + Y G L L
Sbjct: 115 EAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRF----IGALDYEAFLASGD 170
Query: 191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDD 250
P+ + P ++ D +A YTSGTTG PK V H A A+S G+
Sbjct: 171 PDFAWTLPADEW------DAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHP 224
Query: 251 VVYTTLPLYHTAG 263
V TLP++H G
Sbjct: 225 VYLWTLPMFHCNG 237
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 49.6 bits (119), Expect = 2e-06
Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 29/194 (14%)
Query: 207 PSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDD------------VV 252
+D L +YT GTTG+PK + + + + T ++
Sbjct: 2 SADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61
Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVI--RSKFSASNFWKDCIKYNCTVAQYIGE-MCR 309
PL H AG L + L G TVV+ KF W+ K+ +G+ R
Sbjct: 62 LPACPLMHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFAR 120
Query: 310 YLLAVPEKPEDTQ-HSVKMMIGNGLRPQVWEPFQKRFGLD-----RICEFYGATE--GNA 361
LL E S++ + +G +W P K+ L+ + + GA+E G
Sbjct: 121 PLLEALEAAGRYDLSSLRAISSSGA---MWSPEVKQGLLELLPNLALVDALGASETGGGG 177
Query: 362 NLMNADGKVGAVGY 375
+ ++ G A G
Sbjct: 178 SSVSRAGGASATGK 191
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 49.1 bits (118), Expect = 3e-06
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 206 KPSDKLAY-IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGG 264
P D AY IYTSG+TG PK V+TH + G+ D V +
Sbjct: 97 SPDD-PAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQFASIAFDV-S 154
Query: 265 LLGIGQCLLGGSTVVIRSKFSASNFWKDCIK-YNCTVA 301
+L I LL G T+VI + + + TVA
Sbjct: 155 ILEIFTTLLAGGTLVIPPEELRLEDLAEFLNRLRVTVA 192
Score = 40.3 bits (95), Expect = 0.002
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFI 123
+N++A+ S G++ GD VAL +E P YV + L + K G AA++
Sbjct: 27 ANKLAHHLISLGVRPGDIVALCLERSPWLYVAI-LAVLKAG--AAYV 70
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 49.2 bits (117), Expect = 3e-06
Identities = 101/440 (22%), Positives = 169/440 (38%), Gaps = 57/440 (12%)
Query: 58 REVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG 117
R+ P+T YT ++E + A G + +VAL++ P++ + G K G
Sbjct: 43 RDRPIT----YT---ELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAG 95
Query: 118 VVAAFINTNQRQHILIHSIKVAECKAII---YGAELSEALTEVK----DSIPGISLYAAG 170
++ + L H + + + +I A L AL ++ D + G
Sbjct: 96 ARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWG 155
Query: 171 TRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH 230
PQA +P+ + V + + P D YT GTTGLPK A++TH
Sbjct: 156 KVGTPQAP-IPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTH 214
Query: 231 VRAMFMAISGRYQTGL----TSDDV--VYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKF 284
+ A+S G T DV V LPL+H + + + L G + + +F
Sbjct: 215 GN-LTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRF 273
Query: 285 SASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRP---QVWEPF 341
+ ++D + TV + M L P E S IG+G P +V F
Sbjct: 274 DVAAVFRDIEEKRATVFPGVPTMWIALANDPSL-EKRDLSSLATIGSGGAPLPVEVANFF 332
Query: 342 QKRFGLDRICEFYGATE----GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSE 397
+++ GL ++ +G TE G + K G++G + +P + ++ D
Sbjct: 333 ERKTGL-KLKSGWGMTETCSPGTGHPPEGPDKPGSIG----LMLPGIELDVVSLDD---- 383
Query: 398 PIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNT 457
P K PG +G ++ R + GY ++ + + F T
Sbjct: 384 ----------PTKVLPPG-EVGELR-IRGPNVTRGYWNRPEE------SAEAFVGDRFLT 425
Query: 458 GDILIKDKFQYFYFKDRTGD 477
GDI D YF+ DR D
Sbjct: 426 GDIGYMDTDGYFFLVDRKKD 445
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 49.2 bits (117), Expect = 3e-06
Identities = 54/221 (24%), Positives = 83/221 (37%), Gaps = 33/221 (14%)
Query: 79 NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
+A +++ + RG V + + PE L +K+G +A + N + ++
Sbjct: 52 GGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQI 111
Query: 139 AECKAIIYGAEL---SEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
+ A + S A+ E SIP I++ A R+ S
Sbjct: 112 TDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRE-------------------SE 152
Query: 196 KSPTEDIKKNKPS----DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
S D LA I+TSGTTG PKA ++ + R F + GL
Sbjct: 153 HSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLAN-RTFFAVPDILQKEGLNWVTW 211
Query: 252 V-----YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSAS 287
V Y+ LP H GGL I CL+ G V + + S
Sbjct: 212 VVGETTYSPLPATHI-GGLWWILTCLMHGGLCVTGGENTTS 251
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 49.2 bits (117), Expect = 3e-06
Identities = 64/298 (21%), Positives = 110/298 (36%), Gaps = 18/298 (6%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
Q D R+A S + + D V++ P M + G V INT +
Sbjct: 44 QTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSI 103
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPG---------ISLYAAGTRRKPQAKVLPST 183
++ A+ K + EV + I ++ ++P ++ L
Sbjct: 104 AAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYE 163
Query: 184 TLLD--EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR 241
L+ E P + A+ + D ++ YTSGTT PK V++H A +S
Sbjct: 164 CLIQRGEPTPSLVARM----FRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAI 219
Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA 301
+ + V TLP++H G G GG++V +R +A +K+ +N T
Sbjct: 220 IGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR-HVTAPEIYKNIEMHNVTHM 278
Query: 302 QYIGEMCRYLLAVPEKPEDTQHS-VKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATE 358
+ + LL + V ++ G P +R G ++ YG TE
Sbjct: 279 CCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQRLGF-QVMHAYGLTE 335
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 48.9 bits (117), Expect = 5e-06
Identities = 54/215 (25%), Positives = 77/215 (35%), Gaps = 19/215 (8%)
Query: 57 IREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI 116
IR G YK+ + I + G+ +G V L+ +PE++ + S
Sbjct: 67 IRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAY 126
Query: 117 GVVAA----FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISL---YAA 169
V+ + + + I+ H AE AI + L IP + L
Sbjct: 127 SYVSVPLYDTLGPDAVKFIVNH----AEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGG 182
Query: 170 GTRRKPQAKVLPSTTLLD----EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKA 225
P LPS T ++ +L SP KP D YTSGTTG PK
Sbjct: 183 ADEPLPS---LPSGTGVEIVTYSKLLAQGRSSPQPFRPP-KPEDVATICYTSGTTGTPKG 238
Query: 226 AVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYH 260
V+TH + T DV + LPL H
Sbjct: 239 VVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 48.1 bits (115), Expect = 7e-06
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 192 EVSAKSPTEDIKKNKPS---DKLA-YIYTSGTTGLPKAAVMTH-----VRAMFMAISGRY 242
+++A PT + + D +A Y++TSG+TG+PKA + T AM + R
Sbjct: 200 DLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPRE 259
Query: 243 QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
+ + +P HT GG L GG T+ I
Sbjct: 260 PDPPPPVSLDW--MPWNHTMGGNANFNGLLWGGGTLYI 295
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 48.0 bits (114), Expect = 8e-06
Identities = 74/306 (24%), Positives = 121/306 (39%), Gaps = 34/306 (11%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV-----AAFINTNQ 127
++ D ++AN+ K G+++GDAV +++ E L ++IG V A F +
Sbjct: 125 ELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESL 184
Query: 128 RQHILIHSIKVA-ECKAIIYGAEL-------SEALTEVKDSIPGISLYAAGTRRKPQAKV 179
Q I+ KV C A+ G + AL E + G+S+ T A
Sbjct: 185 AQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKN--GVSVGICLTYENQLAMK 242
Query: 180 LPSTTLLDEE---LPEVSAKSPTE-DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM- 234
T + +V PT+ +++ D L +YTSG+TG PK + T M
Sbjct: 243 REDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 302
Query: 235 FMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF----- 289
+ A + +Y DV + T G +L G+TV++ A N+
Sbjct: 303 YTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFE--GAPNYPDSGR 360
Query: 290 -WKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMM-----IGNGLRPQVWEPFQK 343
W KY T+ + R L+ ++ T+HS K + +G + P W F
Sbjct: 361 CWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV-TRHSRKSLRVLGSVGEPINPSAWRWFFN 419
Query: 344 RFGLDR 349
G R
Sbjct: 420 VVGDSR 425
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 48.4 bits (116), Expect = 8e-06
Identities = 63/284 (22%), Positives = 100/284 (35%), Gaps = 76/284 (26%)
Query: 111 LGLSKIGVVAAFINTNQRQHILIHSIKVAECKAI------IYGAELSEALTEVKDSIPGI 164
L G V A IN + ++ + K A+ K + I A L + ++ I I
Sbjct: 700 FALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRII 759
Query: 165 SLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPK 224
L V L D+ ++ + P P D ++TSG+ G PK
Sbjct: 760 YL----------EDVRAQIGLADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPK 809
Query: 225 AAVMTHVRAMFMAISGRYQTG----LTSDDVVYTTLPLYH----TAGGLLGIGQCLLG-- 274
V++H R + ++ R Q + +D V+ LP++H T G +L + L G
Sbjct: 810 GVVLSH-RNL---LANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPL---LSGVK 862
Query: 275 --------------------GSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
+T++ F F Y Y RY+ A
Sbjct: 863 VFLYPSPLHYRIIPELIYDTNATIL----FGTDTFLNG---YARYAHPYDFRSLRYVFAG 915
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATE 358
EK ++ Q W ++FG+ RI E YG TE
Sbjct: 916 AEKVKEETR------------QTWM---EKFGI-RILEGYGVTE 943
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 47.9 bits (114), Expect = 9e-06
Identities = 92/413 (22%), Positives = 153/413 (37%), Gaps = 96/413 (23%)
Query: 73 QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHI 131
+ D +NRIA+ G+ G+ V L P V WL + K G + R
Sbjct: 65 DLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRAK- 123
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
E I+ A ++ AL +
Sbjct: 124 --------ELTTIVDKARITHALCDK---------------------------------- 141
Query: 192 EVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTS 248
++A +D +A I +TSGTTGLPK + H + A+ A R+ T
Sbjct: 142 RLTA------------ADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFP-RHVLQPTP 188
Query: 249 DDVVYTTLPLYHTAG-GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
DDV + PL T G G L + G S V++ + + K ++ T+
Sbjct: 189 DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLL-EQATPPLLLKAIQEHRATILFTAPTA 247
Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
R +L + + + + G L +VW+ + +R GL +I + GATE ++A+
Sbjct: 248 YRAMLIKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGL-KIIDGIGATEMLHIFISAN 306
Query: 368 ---GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
K GA G +P Y I + G +P E G L
Sbjct: 307 EENAKPGATGK----PVPGY-----------EARIVDDQGNEVP--RGEAGRL-----AV 344
Query: 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
R + D++ +++ +R+ ++ TGDI +D+ YF++ R+ D
Sbjct: 345 RGPTGCRYLDDER--QQEYVRDGWNV------TGDIFRQDEDGYFHYVARSDD 389
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 47.6 bits (114), Expect = 1e-05
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 197 SPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAIS----GRYQTGLTSD 249
SP + + AY+ YTSG+T P +++H V A F + G D
Sbjct: 148 SPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPD 207
Query: 250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFS 285
V + LP YH G +LG+ +LGG V+ S +
Sbjct: 208 TTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVA 243
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 47.3 bits (112), Expect = 1e-05
Identities = 58/256 (22%), Positives = 92/256 (35%), Gaps = 43/256 (16%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFINTNQRQHI 131
Q++D S +A GL+ GD VAL + PE V +W L + G+ IN
Sbjct: 29 QLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAAL-RSGLYITAIN------- 80
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
H + E I+ G + L ++ G++ + E
Sbjct: 81 --HHLTAPEADYIV-GDSGARVLV-ASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAA 136
Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKA---------------AVMTHVRAMFM 236
A + +P + +Y+SGTTG PK ++ RA +
Sbjct: 137 LAGAGPRLTE----QPCGAVM-LYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY- 190
Query: 237 AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKY 296
++ D+ Y++ P+YH A L G TVV+ +F A +Y
Sbjct: 191 --------DISESDIYYSSAPIYH-AAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERY 241
Query: 297 NCTVAQYIGEMCRYLL 312
TV Q + M LL
Sbjct: 242 RITVTQMVPTMFVRLL 257
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 47.2 bits (113), Expect = 1e-05
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 56/183 (30%)
Query: 79 NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
R AN KS G+++GD VA++M PE L ++IG IHS
Sbjct: 99 CRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA--------------IHS--- 141
Query: 139 AECKAIIYGAELSEALTE-VKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL--PEVSA 195
+++G +EAL + + D+ + + A R KV+P ++DE L VS
Sbjct: 142 -----VVFGGFSAEALADRINDAGAKLVITADEGLRG--GKVIPLKAIVDEALEKCPVSV 194
Query: 196 KS-------------------PTEDIKKNKPS----------DKLAYIYTSGTTGLPKAA 226
+ D+ + D L +YTSG+TG PK
Sbjct: 195 EHVLVVRRTGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGV 254
Query: 227 VMT 229
+ T
Sbjct: 255 LHT 257
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 46.4 bits (111), Expect = 2e-05
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 42/231 (18%)
Query: 64 GAYKY-TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA 121
G Y ++F +++ S+ IA+ + G+ RG L + E+ + L K G V
Sbjct: 35 GKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPV 94
Query: 122 FIN-----TNQRQHILIHSIKVAECKAIIYGAELSEALTEV----KDSIPGISLYAAGTR 172
++ N +Q L + + A I G + + K S+ L G R
Sbjct: 95 LVDPGMGIKNLKQ-CLAEA----QPDAFI-GIPKAHLARRLFGWGKPSV--RRLVTVGGR 146
Query: 173 RKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVR 232
L L A +P + P D A ++TSG+TG PK V TH
Sbjct: 147 LLWGGTTL-------ATLLRDGAAAPFP-MADLAPDDMAAILFTSGSTGTPKGVVYTH-- 196
Query: 233 AMFMA----ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV 279
MF A + Y G+ ++ T PL+ L G LG ++V+
Sbjct: 197 GMFEAQIEALREDY--GIEPGEIDLPTFPLF----ALFGP---ALGMTSVI 238
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 46.2 bits (110), Expect = 3e-05
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 21/223 (9%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
T+T+ Q + + A F GL+R +V + PE+ +G G +A I T
Sbjct: 8 TLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTN 67
Query: 128 R----QHILIHS---IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL 180
Q++ S I V + A+ + + ++D +P L A R+P +
Sbjct: 68 SPEACQYVAETSEANILVVD------NAKQLQKILAIQDQLP--HLKAIIQYREPLKEKE 119
Query: 181 PSTTLLDE--ELPEVSAKSPTEDIKKN-KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA 237
P+ E EL + I ++ KP+ IYTSGTTG+PK +++H + A
Sbjct: 120 PNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTA 179
Query: 238 ISGRYQTGLTSD--DVVYTTLPLYHTAGGLLGIGQCLLGGSTV 278
+ L + + V + LPL H A +L I + G V
Sbjct: 180 KAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCV 222
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 46.0 bits (109), Expect = 3e-05
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDD 250
PE + K P ++ +A YTSGTT PK V+ H A MA+S G+
Sbjct: 184 PEFAWKPPADEW------QSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGA 237
Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281
V TLP++H G L G+ + +R
Sbjct: 238 VYLWTLPMFHCNGWCFTWTLAALCGTNICLR 268
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 45.8 bits (108), Expect = 5e-05
Identities = 76/347 (21%), Positives = 129/347 (37%), Gaps = 66/347 (19%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
Q+ D + R+ +++GL GD V L + P+ V + L GV+A N
Sbjct: 35 QIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE------ 88
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
+H +D +A R A V+ S L D P
Sbjct: 89 LH-----------------------RDD------HALAARNTEPALVVTSDALRDRFQPS 119
Query: 193 --VSAKSPTEDIKKNKPSD-------KLAY-IYTSGTTGLPKAAVMTHVRAM-FMAISGR 241
A + + P LAY YTSGTTG PKAA+ H + F+ R
Sbjct: 120 RVAEAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCR 179
Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCL-----LGGSTVVIRSKFSASNFWKDCIKY 296
LT +D + +Y G+G + GGS V+ + + ++
Sbjct: 180 KALRLTPEDTGLCSARMYFA----YGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARF 235
Query: 297 NCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY 354
+V + + + D+ S++ ++ G L + E + FG I +
Sbjct: 236 GPSVLYGVPNF--FARVIDSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI 293
Query: 355 GATE-GNANLMNA--DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEP 398
G+TE G + N + ++G +G + +P Y + ++ D T+ P
Sbjct: 294 GSTEVGQTFVSNRVDEWRLGTLGRV----LPPYEIRVVAPDGTTAGP 336
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 45.2 bits (107), Expect = 5e-05
Identities = 80/412 (19%), Positives = 137/412 (33%), Gaps = 74/412 (17%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
R+A + +G G+ +A+ V + +++G A ++ N R + +
Sbjct: 34 RLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVG--AIYVPLNWR-------LSAS 84
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSP- 198
E A++ AE L + G AAG L + A P
Sbjct: 85 ELDALLQDAE--PRL------LLGDDAVAAGR---------TDVEDLAAFIASADALEPA 127
Query: 199 -TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP 257
T I + S L +TSGT+G PK +++ A + + + P
Sbjct: 128 DTPSIPPERVSLIL---FTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAP 184
Query: 258 LYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIG--EMCRYLLAVP 315
++H G + + L G ++++ + F + Y +M + A P
Sbjct: 185 MFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQP 244
Query: 316 E-KPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLD---RICEFYGATEGNANL-MNAD--- 367
+H + G LD + + +G +E M+ D
Sbjct: 245 GFDAAALRHLTALFTGGAPHAAE----DILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDV 300
Query: 368 --GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR 425
K GA G IP V D + ++ C A PG L+ R
Sbjct: 301 IRAKAGAAG------IPTPTVQTRVVDDQGND-----------CPAGVPGELL-----LR 338
Query: 426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ GY + + + GD F TGDI +D +F+ DR D
Sbjct: 339 GPNLSPGYWRRPQATARAFT-----GDGWFRTGDIARRDADGFFWVVDRKKD 385
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 45.7 bits (108), Expect = 5e-05
Identities = 59/295 (20%), Positives = 108/295 (36%), Gaps = 38/295 (12%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+++ +NR+A+ +++G+ VA+ E E V L + K G A++ +
Sbjct: 2033 ELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAG--GAYVPLD------ 2084
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTL--LDEEL 190
Y AE + E DS G +L T+R ++ + L +
Sbjct: 2085 -----------PNYPAERLAYMLE--DS--GAALLL--TQRHLLERLPLPAGVARLPLDR 2127
Query: 191 PEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLT 247
A P + LAY IYTSG+TGLPK ++H + A A RY+
Sbjct: 2128 DAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPA 2187
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR--SKFSASNFWKDCIKYNCTVAQYIG 305
++ + + LL G+ V+IR + + + ++ T+ +
Sbjct: 2188 DCELQFMSFSFDGAHEQWF---HPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPP 2244
Query: 306 EMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
LA + + +V++ G + + + YG TE
Sbjct: 2245 VYL-QQLAEHAERDGRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTE 2298
Score = 42.6 bits (100), Expect = 5e-04
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 198 PTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTL 256
P D D LAY IYTSG+TG PK ++H + + + LT DD V +
Sbjct: 4683 PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFM 4742
Query: 257 PLYHTAGGLLGIGQCLLGGSTVVIR 281
+ G G+ L+ G++VVIR
Sbjct: 4743 S-FSFDGSHEGLYHPLINGASVVIR 4766
Score = 39.9 bits (93), Expect = 0.003
Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
++ +NR+A+ +G+ V + ME E V L + K G A++ +
Sbjct: 541 ELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAG--GAYVPLDPE---- 594
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT--LLDEEL 190
Y AE + E DS G+ L + + + + LD
Sbjct: 595 -------------YPAERLAYMLE--DS--GVQLLLSQSHLGRKLPLAAGVQVLDLDRPA 637
Query: 191 PEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH 230
+ S E+ + LAY IYTSG+TG PK A H
Sbjct: 638 AWLEGYS-EENPGTELNPENLAYVIYTSGSTGKPKGAGNRH 677
Score = 34.5 bits (79), Expect = 0.15
Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 4/180 (2%)
Query: 200 EDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAMFMAISGRYQT-GLTSDDVVYTTLP 257
+ + LAY IYTSG+TG PK + H A+ + Q GL D V
Sbjct: 3187 ANPAIRTMPENLAYVIYTSGSTGKPKGVGIRH-SALSNHLCWMQQAYGLGVGDRVLQFTT 3245
Query: 258 LYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK 317
+ + + L+ G+ VV+ + N + L A E+
Sbjct: 3246 -FSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEE 3304
Query: 318 PEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIP 377
+ + + I G + Q+ F + YG TE + + +P
Sbjct: 3305 EDAHRCTSLKRIVCGGEALPADLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVP 3364
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 45.1 bits (107), Expect = 8e-05
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 50/186 (26%)
Query: 198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP 257
P K +P D ++TSG+ G PK V +H + + T +D + LP
Sbjct: 355 PRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALP 414
Query: 258 LYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKY----------NCTV----AQY 303
L+H+ G +G+ LL G+ V + + + Y NCTV + +
Sbjct: 415 LFHSFGLTVGLFTPLLTGAEVFL---------YPSPLHYRIVPELVYDRNCTVLFGTSTF 465
Query: 304 IGEMC-----------RYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICE 352
+G RY++A EK Q S K Q+W Q +FGL RI E
Sbjct: 466 LGNYARFANPYDFARLRYVVAGAEK---LQESTK---------QLW---QDKFGL-RILE 509
Query: 353 FYGATE 358
YG TE
Sbjct: 510 GYGVTE 515
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 44.8 bits (106), Expect = 9e-05
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH------VRAM--FMAISGRYQTGLT 247
K + KP D +YTSGT+G PK V+TH VR + FM +++ +T
Sbjct: 208 KENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFME---QFEDKMT 264
Query: 248 SDDVVYTTLPLYH 260
DDV + LPL H
Sbjct: 265 HDDVYLSFLPLAH 277
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 44.4 bits (105), Expect = 9e-05
Identities = 56/296 (18%), Positives = 107/296 (36%), Gaps = 37/296 (12%)
Query: 69 TVTFQ-VEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+T++ + ++AN+ K + +A+ +E + E++ ++ G + G ++
Sbjct: 26 VLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKW 84
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+Q L + ++ I+ L + + + +D
Sbjct: 85 KQDELKERLAISNADMIVTERYKLNDLPDEEGRV----------------------IEID 122
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
E + PT +N + +TSG+TG PKA + + + +
Sbjct: 123 EWKRMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMK 182
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
+D V L H+ L G L G TV + KF + N +V + M
Sbjct: 183 REDSVLIAGTLVHSL-FLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTM 241
Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQK-----RFGLDRICEFYGATE 358
L E + +K +I +G + WE K F ++ EFYGA+E
Sbjct: 242 LESLYKENRVIE---NKMK-IISSGAK---WEAEAKEKIKNIFPYAKLYEFYGASE 290
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 44.6 bits (106), Expect = 1e-04
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 68/195 (34%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
T TF Q+ D NR+A +S G+QRGD V ++M E L ++IG
Sbjct: 84 TYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA--------- 134
Query: 128 RQHILIHSIKVAECKAIIYGAELSEAL-TEVKDSIPGISLYA-AGTRRKPQAKVLPSTTL 185
IHS +++G S +L + D+ P + + A AG+R KV+P L
Sbjct: 135 -----IHS--------VVFGGFASHSLAARIDDAKPVLIVSADAGSR---GGKVVPYKPL 178
Query: 186 LDEEL------PE-----------------------------VSAKSPTEDIKKNKPSDK 210
LDE + P + A+ P E ++ N+PS
Sbjct: 179 LDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPS-- 236
Query: 211 LAYI-YTSGTTGLPK 224
YI YTSGTTG PK
Sbjct: 237 --YILYTSGTTGKPK 249
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 43.5 bits (103), Expect = 2e-04
Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 62/203 (30%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
++TF ++++ S+RIA ++ G+++GD V L + + + L K+G V I+
Sbjct: 2 SLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGM 61
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+ L L E + P A
Sbjct: 62 GRK------------------HLGRCLEEAE----------------PDAF--------- 78
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTG 245
I K D A ++TSG+TG PK V TH A A+ Y G
Sbjct: 79 --------------IGIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLY--G 122
Query: 246 LTSDDVVYTTLPLYHTAGGLLGI 268
+ D P + G LG+
Sbjct: 123 IREGDRDLAAFPPFALFGPALGV 145
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 43.9 bits (104), Expect = 2e-04
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 180 LPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHV----RAM 234
+P T L P A ++ ++P AY I+TSG+TG PK ++ R +
Sbjct: 572 VPDLTSLCYNAP--LAPQGAAPLQLSQPHH-TAYIIFTSGSTGRPKGVMVGQTAIVNRLL 628
Query: 235 FMAISGRYQTGLTSDDVV 252
+M + LT+DDVV
Sbjct: 629 WM----QNHYPLTADDVV 642
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 43.1 bits (102), Expect = 3e-04
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 216 TSGTTGLPKAAVMTH------VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG--GLLG 267
TSG+TG PKA +TH AMF+A +T DV+ + LPL+H G G L
Sbjct: 160 TSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVET-----DVMVSWLPLFHDMGMVGFLT 214
Query: 268 IGQCLLGGSTVVIR 281
+ G V +
Sbjct: 215 VPMY-FGAELVKVT 227
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 42.9 bits (101), Expect = 3e-04
Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 60/262 (22%)
Query: 64 GAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV-----CMWLGLS---- 114
G Y + +V D + RI + +S+G+ GD ++ PE++ C G++
Sbjct: 73 GPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPL 132
Query: 115 --KIGVVA------------AFINTNQRQHILIHSIKV-AECKAIIYGAELSEALTEVKD 159
+G A AF+ ++ IL K + K I+ ++S E +
Sbjct: 133 YDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAE 192
Query: 160 SIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGT 219
+ G+S ++ + LD ELP K K +D +YTSGT
Sbjct: 193 EL-GVSCFSW--------EEFSLMGSLDCELP-----------PKQK-TDICTIMYTSGT 231
Query: 220 TGLPKAAVMTHVRAMFMAISGRYQTGLT-----SDDVVYTTLPLYHTAGGLLGIGQCLLG 274
TG PK ++T+ + +S + +T +D ++ LPL H ++ C+
Sbjct: 232 TGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIET-YCISK 290
Query: 275 GSTVVIRSKFSASNFWKDCIKY 296
G+++ FW+ I+Y
Sbjct: 291 GASI---------GFWQGDIRY 303
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 42.8 bits (101), Expect = 3e-04
Identities = 40/216 (18%), Positives = 70/216 (32%), Gaps = 29/216 (13%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
++R+A + G++ GD V + + E+ + L ++GV + R L
Sbjct: 63 ADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFAS 122
Query: 138 VAECKAIIY--------GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE 189
E +I + L ++ + + L
Sbjct: 123 QIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAE------HPSVLEAALCHP 176
Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSG-TTGLPKAAVMTHVRAMFMAISGRYQTGLTS 248
+ P + ++A+ SG TTG PK TH + + G
Sbjct: 177 AGLFTPAPPA-------DAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQ 229
Query: 249 DDVVYTTLPLYH----TAGGLLGIGQCLLGGSTVVI 280
V LP H ++ G LG+ L G TVV+
Sbjct: 230 QTVYLCALPAAHNFPLSSPGALGV---FLAGGTVVL 262
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 40.9 bits (96), Expect = 0.001
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 40/202 (19%)
Query: 89 GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN----QRQHILIHSIKVAECKAI 144
L+ GD +A+ + +Y G + G++ +NTN R+ + H + KA+
Sbjct: 71 DLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIV--VNTNPLYTARE--MEHQFNDSGAKAL 126
Query: 145 IY---GAELSEAL-----------TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE-E 189
+ A L+E + TEV D +P + K K++P+ L +
Sbjct: 127 VCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVK 186
Query: 190 LPEVSAKSPTEDIKKNKP-SDKLAYI-YTSGTTGLPKAAVMTH---------VRAMFMAI 238
+ AK + + + P +D +A + YT GTTG+ K A++TH RA+ +
Sbjct: 187 FNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL---M 243
Query: 239 SGRYQTGLTSDDVVYTTLPLYH 260
G +++ LPLYH
Sbjct: 244 GSNLNEGC---EILIAPLPLYH 262
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 40.7 bits (96), Expect = 0.001
Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 51/237 (21%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCM----------WLGLSKIGVVA-- 120
Q+ D +R F++ GL GDAVAL +PE + L +G +
Sbjct: 42 QLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDH 101
Query: 121 AFI-NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP------GISLYAAGTRR 173
A++ +++ E L + +K + G+ L AA +
Sbjct: 102 AYVLEDAGISTLIVDPAPFVE-----RALALLARVPSLKHVLTLGPVPDGVDLLAAAAKF 156
Query: 174 KPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRA 233
P P V+A P + YT GTTG PK + TH R+
Sbjct: 157 GPA--------------PLVAAALPPDIAGLA---------YTGGTTGKPKGVMGTH-RS 192
Query: 234 MFMAISGRYQTGLTSDDVVY-TTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF 289
+ + D + PL H AGG + L GG+ +V+ KF +
Sbjct: 193 IATMAQIQLAEWEWPADPRFLMCTPLSH-AGGAFFLPTLLRGGTVIVLA-KFDPAEV 247
Score = 28.8 bits (65), Expect = 6.7
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
GY ++ + R+ + H TGD+ +D+ ++Y DR D
Sbjct: 378 GYWNRPEETAEAFRDGWLH------TGDVAREDEDGFYYIVDRKKD 417
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 41.1 bits (97), Expect = 0.001
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 182 STTLLDEELPEVSAKSPT---EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFM 236
+ L V A + + K Y++TSG+TGLPKA + TH + A
Sbjct: 143 AALLATPPTAAVDAAFAAVGPDTVAK--------YLFTSGSTGLPKAVINTHRMLCANQA 194
Query: 237 AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
I+ + V+ LP HT GG L G T+ I
Sbjct: 195 MIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYI 238
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 40.7 bits (96), Expect = 0.001
Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 58/222 (26%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA----AFINTNQR 128
Q+ + +A ++ G++R +AL ++ ++V L + G+V F + Q
Sbjct: 7 QLWQEVDLLAEQLRALGVKR---IALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQT 63
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
QH+L + GA+L +++ D+ + A + PS
Sbjct: 64 QHLLNDA-----------GADL--LISDDPDAASALHTPFATLGEDLYIALRPSAN--PV 108
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPK------AAVMTHVRAMFMAISGRY 242
ELP +AK YTSG+TG PK AA+ T +++ AI+
Sbjct: 109 ELPAGTAK----------------ITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAI-- 150
Query: 243 QTGLTSDDVVYTTLPLYHTAGGLL----GIGQCLLGGSTVVI 280
+ LPL LL G+ LL G+TV++
Sbjct: 151 ----LEPERHLCLLPL----ATLLENIAGVYAPLLMGATVIL 184
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 40.7 bits (96), Expect = 0.002
Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 22/167 (13%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQR--QHILIHSIK 137
R+A + G++ GD VA ++ PE V L + IG A + + + ++
Sbjct: 98 RLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIG--AIWSSCSPDFGVEAVLDRFG 155
Query: 138 VAECKAII------YGA---ELSEALTEVKDSIPGIS---LYAAGTRRKPQAKVLPSTTL 185
E K + Y + E + E+ +P + + + A + S
Sbjct: 156 QIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALT 215
Query: 186 LDEELPEVSAKSPT-EDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH 230
L L A E + + P +I Y+SGTTGLPK V
Sbjct: 216 LLWSLAGDRAAPLEFERLPFDHP----LWILYSSGTTGLPKCIVHGA 258
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 40.5 bits (95), Expect = 0.002
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 26/206 (12%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQR 128
E + ++A + G++ GD V ++ + G+S G V IN Q
Sbjct: 44 DCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQI 103
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP--STTLL 186
+I+ H AE + +++ + + P + + A T A LP ST LL
Sbjct: 104 AYIVNH----AEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDA---AH-LPAGSTPLL 155
Query: 187 D-EELPEVSAKSPTED---IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY 242
E L V A+ D +N+ S + YTSGTTG PK A+ +H + A
Sbjct: 156 CYETL--VGAQDGDYDWPRFDENQAS---SLCYTSGTTGNPKGALYSHRSTVLHAYGAAL 210
Query: 243 --QTGLTSDDVVYTTLPLYH-TAGGL 265
GL++ D V +P++H A GL
Sbjct: 211 PDAMGLSARDAVLPVVPMFHVNAWGL 236
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 39.6 bits (92), Expect = 0.004
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTH-----VRAMFMAISGRYQTGLTSDDVVYTT 255
D+ K SD +YTSGTTG PK ++++ + A + + LT DV +
Sbjct: 216 DLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSY 275
Query: 256 LPLYH 260
LPL H
Sbjct: 276 LPLAH 280
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 39.4 bits (93), Expect = 0.005
Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 75/209 (35%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+T+ ++ R AN KS G+++GD VA++M PE L ++IG
Sbjct: 98 KITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGA--------- 148
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTE-VKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
+HS +++G +EAL + + D+ + + A R K +P +
Sbjct: 149 -----VHS--------VVFGGFSAEALADRIIDAGAKLVITADEGVRG--GKPIPLKANV 193
Query: 187 DEEL---------------------------------PEVSAKSPTEDIKKNKPSDKLAY 213
DE L S + E + P +
Sbjct: 194 DEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPL----F 249
Query: 214 I-YTSGTTGLPKA-----------AVMTH 230
I YTSG+TG PK A MT
Sbjct: 250 ILYTSGSTGKPKGVLHTTGGYLVYAAMTM 278
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 38.6 bits (90), Expect = 0.007
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 61 PMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI 116
P T AY+Y +T+ Q+++ S+R+A F + + L + + ++ +P + +LG K
Sbjct: 14 PQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKS 73
Query: 117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQ 176
G ++T+ + I+ A + +I+ AELS
Sbjct: 74 GHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGT------------------- 114
Query: 177 AKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH 230
TL E E S + D K D IYTSG+TG PK ++H
Sbjct: 115 ----QIITLSALEQAETSGGPVSFD-HAVKGDDNYYIIYTSGSTGNPKGVQISH 163
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 38.6 bits (90), Expect = 0.007
Identities = 107/460 (23%), Positives = 172/460 (37%), Gaps = 94/460 (20%)
Query: 69 TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
T+++ ++E HS A + + L GD +A+ M +Y G + G++ +NTN
Sbjct: 49 TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV--VNTN 106
Query: 127 ----QRQHILIHSIKVAECKAIIY----GAELSEA--------LTEVK--DSIPGISLYA 168
R+ + H K + +A++Y G + E L E K D +P +
Sbjct: 107 PLYTARE--MRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWL 164
Query: 169 AGTRRKPQAKVLPSTTLLDEELPE-VSAKSPTEDIKKNKPS------DKLAYI-YTSGTT 220
T K++P LP+ V K + D +A + YT GTT
Sbjct: 165 VNTVVDKVKKMVP-----AYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTT 219
Query: 221 GLPKAAVMTH---VRAMFMAISGRYQTG-------LTSDDVVYTTLPLYH----TAGGLL 266
GL K A++TH V M + Q G +V+ LPLYH TA +
Sbjct: 220 GLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCM- 278
Query: 267 GIGQCLL--GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE-KPEDTQH 323
C++ G V+I + F K+ K+ + + + L+ P K D
Sbjct: 279 ----CMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSA 334
Query: 324 -SVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATE----GNANLMNADGKVGAVGYIPY 378
+ G L E +++ G I E YG TE + N ++G VG
Sbjct: 335 LKLTNSGGTALVKATAERWEQLTGC-TIVEGYGLTETSPVASTNPYGELARLGTVG---- 389
Query: 379 IAIPFYPVGLIKCDPETSE-PIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKK 437
IP L D + +E P+ + LCI + P ++ GY +
Sbjct: 390 --IPVPGTALKVIDDDGNELPLGERGELCI----KGPQVM-------------KGYWQQP 430
Query: 438 ASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ + L + F TGDI + D + DR D
Sbjct: 431 EATAEAL-----DAEGWFKTGDIAVIDPDGFVRIVDRKKD 465
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 38.2 bits (90), Expect = 0.009
Identities = 47/212 (22%), Positives = 75/212 (35%), Gaps = 60/212 (28%)
Query: 80 RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG--------------VVAAFINT 125
+A ++ G+ GD VA ++ PE V L + +G V+ F
Sbjct: 126 ALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRF--- 182
Query: 126 NQRQHILIHSIKVAECKAII------YGA---ELSEALTEVKDSIPGI--SLYAAGTRRK 174
Q I E K +I YG + + E++ ++P + +
Sbjct: 183 --GQ------I---EPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPA 231
Query: 175 PQAKVLPSTTLLDEELPEVSAKSPT-EDIKKNKPSDKLAYI-YTSGTTGLPKAAV----- 227
A LP L ++ L A E + + P +I Y+SGTTGLPK V
Sbjct: 232 AAAAALPGALLWEDFLAPAEAAELEFEPVPFDHP----LWILYSSGTTGLPKCIVHGHGG 287
Query: 228 --MTHVRAMFMAISGRYQTGLTSDDVV--YTT 255
+ H++ + L D YTT
Sbjct: 288 ILLEHLKEL------GLHCDLGPGDRFFWYTT 313
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 38.0 bits (89), Expect = 0.011
Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 38/175 (21%)
Query: 65 AYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV-- 118
AY Y +T+ Q+++ S+ +A F S L + +F PE + +LG K G
Sbjct: 20 AYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAY 79
Query: 119 --VAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQ 176
V + + I I+VA+ II EL + +
Sbjct: 80 IPVDVSSPAERIEMI----IEVAKPSLIIATEELPLEILGIP------------------ 117
Query: 177 AKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH 230
+ +EL ++ A D D Y I+TSGTTG PK ++H
Sbjct: 118 -------VITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISH 165
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 37.3 bits (87), Expect = 0.015
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 208 SDKLAY-IYTSGTTGLPKAAVMTH 230
D LAY IYTSG+TG PK + H
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEH 127
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 37.2 bits (87), Expect = 0.018
Identities = 42/149 (28%), Positives = 58/149 (38%), Gaps = 24/149 (16%)
Query: 143 AIIY---GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD-EELPEVSAKSP 198
+++ GA + AL V + + A +A P LL V A
Sbjct: 148 GLVFADDGAAFARALAAVVP--ADVEVVAVRGAVPGRA-ATPFAALLATPPTAAVDAAHA 204
Query: 199 T---EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY-QT--GLTSDDVV 252
+ I K +++TSG+TGLPKA + TH M A QT L + V
Sbjct: 205 AVGPDTIAK--------FLFTSGSTGLPKAVINTH--RMLCANQQMLAQTFPFLAEEPPV 254
Query: 253 YTT-LPLYHTAGGLLGIGQCLLGGSTVVI 280
LP HT GG +G L G T+ I
Sbjct: 255 LVDWLPWNHTFGGNHNLGIVLYNGGTLYI 283
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 36.4 bits (85), Expect = 0.030
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 24/88 (27%)
Query: 208 SDKLAY-IYTSGTTGLPKAAVMTHVRAM--FMAISGRYQTGLTSDDVVY--TT------- 255
D LAY IYTSG+TG PK ++H RA+ F+ +S + GL + D + TT
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSH-RALVNFL-LSMARRPGLGASDRLLAVTTISFDISV 149
Query: 256 LPLYHTAGGLLGIGQCLLGGSTVVIRSK 283
L L LL G+TVVI S
Sbjct: 150 LELLLP----------LLSGATVVIASA 167
Score = 36.0 bits (84), Expect = 0.045
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
++++ SN++A ++ G+ GD V + +E + V L + K G AA++
Sbjct: 17 ELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAG--AAYV 65
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 35.5 bits (82), Expect = 0.060
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 209 DKLAYI-YTSGTTGLPKA------AVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHT 261
D +AY+ YTSG+T +P + T+V + A+ D + LP +H
Sbjct: 180 DTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL------EGQEGDRGVSWLPFFHD 233
Query: 262 AGGLLGIGQCLLGGS 276
G + + LLG
Sbjct: 234 MGLITVLLPALLGHY 248
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 35.6 bits (82), Expect = 0.067
Identities = 58/313 (18%), Positives = 109/313 (34%), Gaps = 64/313 (20%)
Query: 68 YTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV------- 119
VT+ ++ +A ++ G++ GD V+ ++ P+ V L + +G +
Sbjct: 113 APVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPD 172
Query: 120 ----AAFINTNQRQHILIHSIKVAECKAIIYGAE---LSEALTEVKDSIPG----ISLYA 168
Q + L+ + Y + + + EV+ +P + +
Sbjct: 173 FGARGVLDRFQQIEPKLLFT-----VDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPY 227
Query: 169 AGTRRKPQAKVLPSTTLLDEELPEVSAKSPT-EDIKKNKPSDKLAYIYTSGTTGLPKAAV 227
G R K+ L++ A E + + P L +++SGTTGLPK V
Sbjct: 228 LGPRETEAPKI-DGALDLEDFTAAAQAAELVFEQLPFDHP---LWILFSSGTTGLPKCIV 283
Query: 228 -------MTHVRAMFMAISGRYQTGLTSDDVV--YTTLPL----YHTAGGLLGIGQCLLG 274
+ H++ L D + YTT + +G G L
Sbjct: 284 HSAGGTLVQHLKEH------GLHCDLGPGDRLFYYTTTGWMMWNWLVSGLATGATLVLYD 337
Query: 275 GSTVVIRSKFSASN-FWKDCIKYNCTVAQYIGEMCRYLLAVPE---KPEDTQ--HSVKMM 328
GS F A+N W + T+ G +Y++A + P T +++ +
Sbjct: 338 GSPG-----FPATNVLWDIAERTGATL---FGTSAKYVMACRKAGVHPARTHDLSALQCV 389
Query: 329 IGNG--LRPQVWE 339
G L P +
Sbjct: 390 ASTGSPLPPDGFR 402
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 35.1 bits (81), Expect = 0.082
Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Query: 178 KVLPSTTLLDEELPEV--SAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF 235
+P+T +E+ ++ + +SP + + S L +YTSGTTG KA V ++ +
Sbjct: 222 PTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHL- 280
Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAG---------GLLGIGQCLLGGSTVVIRSKFSA 286
+ + +++ + D T + + + G G L +G + +I++K
Sbjct: 281 VGLKYYWRSIIEKDIP--TVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIE 338
Query: 287 SNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGN 331
+ W K+ T + + RYL+ PE T K + N
Sbjct: 339 DDLWNTIEKHKVTHTLTLPKTIRYLIKT--DPEATIIRSKYDLSN 381
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 34.9 bits (81), Expect = 0.083
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 209 DKLAYI-YTSGTTGLPKAAVMTH 230
D LAYI +TSG+TG PK ++H
Sbjct: 97 DDLAYILFTSGSTGKPKGVQISH 119
Score = 33.7 bits (78), Expect = 0.22
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFI-----NTN 126
++++ ++R+A + G + GD VA++ P+ Y + L K G AA++
Sbjct: 21 ELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAI-LACLKAG--AAYVPLDPSQPA 77
Query: 127 QR-QHILIHSIKVAECKAIIY 146
+R I ++ A A++
Sbjct: 78 ERIAKI----LEAAGPAALVA 94
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 34.3 bits (79), Expect = 0.14
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 38/182 (20%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG-VVAAFINTNQRQHI 131
++ +R+AN + G ++GDA+A+ M V ++L + G VV + ++ I
Sbjct: 213 ELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEI 272
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSI----PGISLYAAGTR----RKPQAKVLPST 183
+K+++ KAI +D I I LY +R + P+A VLP+
Sbjct: 273 ATR-LKISKAKAIF-----------TQDVIVRGGKSIPLY---SRVVEAKAPKAIVLPAD 317
Query: 184 -TLLDEELPE--VSAK----------SPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMT 229
+ +L E +S P E +P + I ++SGTTG PKA T
Sbjct: 318 GKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWT 377
Query: 230 HV 231
+
Sbjct: 378 QL 379
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 33.8 bits (77), Expect = 0.18
Identities = 59/305 (19%), Positives = 109/305 (35%), Gaps = 45/305 (14%)
Query: 64 GAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
GA Y +++ + +A G+ G AV + +V + +G I
Sbjct: 59 GALSYR---ELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPI 115
Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKP-QAKVLPS 182
+T R L +++ ++ E +E + D++ I AG + V
Sbjct: 116 STEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAGAEESGGRPAVAAP 175
Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT-HVR-AMFMAISG 240
++ + TSGTTG PK +R A+ + ++
Sbjct: 176 GRIV---------------------------LLTSGTTGKPKGVPRAPQLRSAVGVWVTI 208
Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG---GSTVVIRSKFSASNFWKDCIKYN 297
+T L + + +P++H LG+G +L G TV+ F A +
Sbjct: 209 LDRTRLRTGSRISVAMPMFHG----LGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHR 264
Query: 298 CTVAQYIGEMCRYLLAVPEKPED----TQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEF 353
+ + +L +P + Q V M G+ L P + + F +G D +
Sbjct: 265 ADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYG-DILYNG 323
Query: 354 YGATE 358
YG+TE
Sbjct: 324 YGSTE 328
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 34.0 bits (78), Expect = 0.19
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 216 TSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSD-DVVYTTLPLYHTAG 263
T+G+TG P+ A+++ V + ++ R GL + DV + LPLYH G
Sbjct: 160 TAGSTGTPRTAILSPGAVLSNLRGLNAR--VGLDAATDVGCSWLPLYHDMG 208
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 34.0 bits (78), Expect = 0.20
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 207 PSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGL 265
P + + I ++SGTTG PKA TH+ + A G + DVV L G
Sbjct: 117 PVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPW 176
Query: 266 LGIGQCLLGGSTV 278
L + L G+T+
Sbjct: 177 L-LYSAFLNGATL 188
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 33.6 bits (77), Expect = 0.25
Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 25/226 (11%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+++ ++ +A G+++GD + + E+ ++ L K+GV
Sbjct: 53 ELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA--------- 103
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
+ S + +E + A E + D + Y R+ ++ + E
Sbjct: 104 LFSHRKSE---LTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGE 160
Query: 193 VSAKSPTEDIK-----KNKPSDKLAYIYTS-GTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
E SD++A+ S G+TG PK TH + L
Sbjct: 161 AELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWL 220
Query: 247 TSDDVVYTTLPLYH----TAGGLLGIGQCLLGGSTVVIRSKFSASN 288
T LP H ++ G LG+ G VV+ S ++
Sbjct: 221 TQQTRYLCALPAAHNYPLSSPGALGV---FYAGGCVVLAPDPSPTD 263
>gnl|CDD|236754 PRK10760, PRK10760, murein hydrolase B; Provisional.
Length = 359
Score = 33.2 bits (76), Expect = 0.26
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 62 MTGAYK-YTVTFQVEDHSN---------RIANFFKSKGLQRGDAVALFMEGQ 103
M ++K Y V F + H N +AN+FK+ G +GD VA+ GQ
Sbjct: 225 MPSSFKQYAVDFNGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVPANGQ 276
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 33.3 bits (76), Expect = 0.28
Identities = 56/278 (20%), Positives = 96/278 (34%), Gaps = 68/278 (24%)
Query: 117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVK-DSI--PGISLYAAGTRR 173
G + IN +Q + + ++ +L + L + + P +Y R+
Sbjct: 91 GKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK 150
Query: 174 KPQAKVLPSTTLLDEELPEVSAKSPTE------DIKKNKPSDKLAYIYTSGTTGLPKAAV 227
+ + ++ + P E + P D ++TSGT LPK
Sbjct: 151 E--------LSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVP 202
Query: 228 MTHV------RAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQC----LLGGST 277
+TH RA S DDV+ + LP +H G C LL G
Sbjct: 203 LTHANLLANQRACLKFFSP------KEDDVMMSFLPPFHA----YGFNSCTLFPLLSGVP 252
Query: 278 VVIRSKFSASNFWKDCIKYNCTVAQYIGEMC---------------RYLLAVPEKPEDTQ 322
VV F+ YN + I EM Y+L +K E
Sbjct: 253 VV----FA----------YNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCL 298
Query: 323 HSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
S++ ++ G+ + +++ K F ++ + YG TE
Sbjct: 299 PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE 336
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 32.7 bits (75), Expect = 0.49
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN---QRQ 129
Q+ + SN +A++ G++RGD V ++ + V +G+ K G + I+ RQ
Sbjct: 275 QINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQ 334
Query: 130 HILIHSIKVAECKAIIY---GAELSEALT-------EVKDSIPGISLYAAGT 171
I + VA+ +A+I L + + E++ IP ++L G+
Sbjct: 335 TIY---LSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGS 383
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 31.5 bits (72), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 147 GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
G L+E +V+++I ++ YAAG R+ + +PS ELP A +
Sbjct: 88 GKPLAEGRGDVQEAI-DMAQYAAGEGRRLFGETVPS------ELPNKDAMT 131
>gnl|CDD|225249 COG2374, COG2374, Predicted extracellular nuclease [General
function prediction only].
Length = 798
Score = 31.0 bits (70), Expect = 1.8
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 19/70 (27%)
Query: 20 AGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTFQVEDHSN 79
G AAIVD + G+ + ARP +T +++ +G K+ V
Sbjct: 584 VGKAAIVDND-------AFLGVGEIDDNNARPPLAQTFQDL--SGGEKFVV--------- 625
Query: 80 RIANFFKSKG 89
+ N FKSKG
Sbjct: 626 -VVNHFKSKG 634
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 30.3 bits (69), Expect = 2.4
Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 49/233 (21%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQ-PEYVCMWLGLSKIGVV---AAFINTNQRQHILI 133
S+ +A + +G++ GD AL G E+ + L K+GV A F + ++ L
Sbjct: 58 SDNLACSLRRQGIKPGDT-ALVQLGNVAEFYITFFALLKLGVAPVNALF---SHQRSELN 113
Query: 134 HSIKVAECKAIIYGAELSEAL-------TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
E +I A+ AL + + + L +
Sbjct: 114 AYASQIEPALLI--ADRQHALFSDDDFLNTLVAEHSSLRVVL--LLNDDGEHSL--DDAI 167
Query: 187 DEELPEVSAKSPTEDIKKNKPSDKLAYIYTS-GTTGLPKAAVMTH------VRAMFMAIS 239
+ + +A +P+ P+D++A+ S G+TG PK TH VR + I
Sbjct: 168 NHPAEDFTA-TPS-------PADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRS-VEI- 217
Query: 240 GRYQTGLTSDDVVYTTLPLYH----TAGGLLGIGQCLLGGSTVVIRSKFSASN 288
G T LP H ++ G LG+ L G TVV+ SA+
Sbjct: 218 ----CGFTPQTRYLCALPAAHNYPMSSPGALGV---FLAGGTVVLAPDPSATL 263
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 30.5 bits (69), Expect = 2.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI 238
K+ I+ P + +YTSGT+G PK VM + ++ +
Sbjct: 292 KTTNYKIQNEDPDFITSIVYTSGTSGKPK-GVMLSNKNLYNTV 333
>gnl|CDD|145192 pfam01893, UPF0058, Uncharacterized protein family UPF0058. This
archaebacterial protein has no known function.
Length = 88
Score = 27.6 bits (62), Expect = 3.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 133 IHSIKVAECKAIIY--GAELSEALTEVKDSIPGI 164
IH K +E K I+ G ++EA++E + S P
Sbjct: 42 IHRSK-SEHKYAIFLLGNAIAEAMSEDEFSSPRR 74
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 29.3 bits (66), Expect = 6.0
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 209 DKLAYI-YTSGTTGLPKA------AVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHT 261
D ++++ YTSG+T P AV T++ M ++I L + + LPLYH
Sbjct: 193 DDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSID-----LLDRNTHGVSWLPLYHD 247
Query: 262 AGGLLGIG 269
GL IG
Sbjct: 248 M-GLSMIG 254
>gnl|CDD|233809 TIGR02282, MltB, lytic murein transglycosylase B. This family
consists of lytic murein transglycosylases (murein
hydrolases) in the family of MltB, which is a
membrane-bound lipoprotein in Escherichia coli. The
N-terminal lipoprotein modification motif is conserved
in about half the members of this family. The term Slt35
describes a naturally occurring soluble fragment of
MltB. Members of this family never contain the putative
peptidoglycan binding domain described by pfam01471,
which is associated with several classes of bacterial
cell wall lytic enzymes [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 290
Score = 28.9 bits (65), Expect = 6.6
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 62 MTGAYK-YTVTF----------QVEDHSNRIANFFKSKGLQRGDAVALFMEGQP 104
M +Y+ Y V F +D +AN+F + G RGD VA+ G
Sbjct: 158 MPSSYRQYAVDFDGDGHIDLWNSPDDAIGSVANYFHAHGWVRGDPVAVPATGAA 211
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 28.5 bits (64), Expect = 8.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 216 TSGTTGLPKAAVMT 229
TSGTTG PK A++T
Sbjct: 43 TSGTTGTPKGAMLT 56
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 28.7 bits (65), Expect = 9.0
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 147 GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
G L E L EV++ I I YA G R +PS E P
Sbjct: 86 GKILPEGLGEVQEMI-DICDYAVGLSRMLYGLTIPS------ERPG 124
>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
to the pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
produced by O-phosphoseryl-tRNA synthetase which ligates
O-phosphoserine (Sep) to tRNA(Cys), and
Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea.
SepCysS forms a dimer, each monomer is composed of a
large and small domain; the larger, a typical pyridoxal
5'-phosphate (PLP)-dependent-like enzyme fold. In the
active site of each monomer, PLP is covalently bound to
a conserved Lys residue near the dimer interface.
Length = 361
Score = 28.1 bits (63), Expect = 9.7
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 56 TIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY 106
+REVP TG +Y +T E ++ I + G AL + +
Sbjct: 106 NVREVPNTGHPEYHIT--PEGYAEVIEEVKD----EFGKPPALALLTHVDG 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,385,968
Number of extensions: 2368391
Number of successful extensions: 2205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 248
Length of query: 479
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 378
Effective length of database: 6,457,848
Effective search space: 2441066544
Effective search space used: 2441066544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)