RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8225
(479 letters)
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 187 bits (478), Expect = 8e-54
Identities = 76/417 (18%), Positives = 154/417 (36%), Gaps = 42/417 (10%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+ T+ ++E+ + R A+ ++ G+ + + L M +LG GVV NT
Sbjct: 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLL 107
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
++ + + +A+I L + +T+ +S ++ P+ L +
Sbjct: 108 TPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQ--PRESEPRLAPLFE 165
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGL 246
E + A +P D ++Y+SG+TG PK V TH + A + + G+
Sbjct: 166 ELI---DAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI 222
Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLL-GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIG 305
+DVV++ L+ G G+ L G + +++ + +A + +++ TV +
Sbjct: 223 AENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP 282
Query: 306 EMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNANL 363
+ +L P P ++++ G L ++ E F FG I + G+TE
Sbjct: 283 TLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEMLHIF 341
Query: 364 MNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGM 420
++ + G G +P Y + L D E G L
Sbjct: 342 LSNRAGAVEYGTTG----RPVPGYEIELR--DEAGHA-----------VPDGEVGDLY-- 382
Query: 421 IKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ S Y + + + + +GD + + + R+ D
Sbjct: 383 ---IKGPSAAVMYWNNREKSRATFLGEW------IRSGDKYCRLPNGCYVYAGRSDD 430
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 169 bits (430), Expect = 4e-47
Identities = 97/421 (23%), Positives = 152/421 (36%), Gaps = 60/421 (14%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+++ ++ + R+AN ++GLQ GD VA E E + ++L + G V +NT
Sbjct: 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAY 87
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
H L + I AE K ++ + + + + L
Sbjct: 88 TLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGP----------DGRGSLT 137
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
+ S T D D A +YTSGTTG K A+++H +++ T
Sbjct: 138 DAAAGASEAFATIDRG---ADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFT 194
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV-----AQ 302
DDV+ LP+YHT G + L +++ KF D + TV
Sbjct: 195 PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-DLMA-RATVLMGVPTF 252
Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN 360
Y LL P ++T +++ I L + + G + E YG TE N
Sbjct: 253 YTR-----LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETN 306
Query: 361 A---NLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-I 416
N + D GAVG A+P + DPET + + G I
Sbjct: 307 MNTSNPYDGDRVPGAVG----PALPGVSARVT--DPETGK----------ELPRGDIGMI 350
Query: 417 LIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTG 476
+ + + F GY K R D F TGD+ D+ Y + R
Sbjct: 351 EV------KGPNVFKGYWRMPEKTKSEFR-----DDGFFITGDLGKIDERGYVHILGRGK 399
Query: 477 D 477
D
Sbjct: 400 D 400
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 160 bits (407), Expect = 2e-43
Identities = 95/431 (22%), Positives = 157/431 (36%), Gaps = 68/431 (15%)
Query: 69 TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
F ++ ++S + AN GLQRGD VA+ + PE+ + LG + G++
Sbjct: 73 MWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQ 132
Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS--LYAAGTRRKPQAKVLPSTT 184
+ +++ +++++ KAI+ G E+ + + V P + L +
Sbjct: 133 MKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC-------DGWL 185
Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
+ L E S + + A +TSGT+GLPK A ++ A T
Sbjct: 186 NFKKLLNEASTTHHCVETG---SQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242
Query: 245 GLTSDDVVYTTLPL---YHTAGGLLGIGQCLLGGSTVVI--RSKFSASNFWKDCIKYNCT 299
GL + D+++T + L+ G+ + KF K Y
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLME---PWALGACTFVHLLPKFDPLVILKTLSSYPIK 299
Query: 300 VAQYIGEMC------RYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRIC 351
M R LL ++ + G L P+ E ++ + GLD I
Sbjct: 300 S------MMGAPIVYRMLLQQDLSSYKFP-HLQNCVTVGESLLPETLENWRAQTGLD-IR 351
Query: 352 EFYGATEGN---ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG-LCI 407
E YG TE K G +G A Y V +I D + + +G + I
Sbjct: 352 ESYGQTETGLTCMVSKTMKIKPGYMGT----AASCYDVQII--DDKGNVLPPGTEGDIGI 405
Query: 408 PCKAEEPGILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
K P IG+ F+GY + + I + + GD IKD+
Sbjct: 406 RVKPIRP---IGI---------FSGYVDNPDKTAANIRGDFW-------LLGDRGIKDED 446
Query: 467 QYFYFKDRTGD 477
YF F R D
Sbjct: 447 GYFQFMGRADD 457
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 159 bits (404), Expect = 2e-43
Identities = 74/442 (16%), Positives = 151/442 (34%), Gaps = 75/442 (16%)
Query: 52 LFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV 107
++ R P A+ +T + R+A+ G+ GD VA+ + E +
Sbjct: 11 VYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI 70
Query: 108 CMWLGLSKIGVVAAFINTNQR----QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG 163
+ ++ IG + +N +L ++ G + + + V S+ G
Sbjct: 71 ELIGAVALIGAILLPVNYRLNADEIAFVLGDG----APSVVVAGTDYRDIVAGVLPSLGG 126
Query: 164 ISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLP 223
+ + + ++++ +P + +D I+T+ G P
Sbjct: 127 VKKAY----------AIGDGSGPFAPFKDLASDTPFSAPEFG-AADGFVIIHTAAVGGRP 175
Query: 224 KAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK 283
+ A+++ + S LT DV LPL+H G L + GG++V+ K
Sbjct: 176 RGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-K 234
Query: 284 FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP-------EKPEDTQHS-VKMMIGNGLRP 335
F + +D + TV + ++ Q + ++ + G P
Sbjct: 235 FDPAQAARDIEAHKVTV----------MAEFAPMLGNILDQAAPAQLASLRAVTG-LDTP 283
Query: 336 QVWEPFQKRFGLDRICEFYGATE--GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDP 393
+ E F+ +G +E G + + + G + + V ++ D
Sbjct: 284 ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAG----RPLFWRTVAVV--DA 337
Query: 394 ETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGD 452
E E G I++ R + F GY + A+ + RN +
Sbjct: 338 EDRP-----------LPPGEVGEIVL------RGPTVFKGYWNNAAATQHAFRNGW---- 376
Query: 453 AAFNTGDILIKDKFQYFYFKDR 474
+TGD+ D Y ++ R
Sbjct: 377 --HHTGDMGRFDADGYLFYAGR 396
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 156 bits (398), Expect = 1e-42
Identities = 77/323 (23%), Positives = 123/323 (38%), Gaps = 42/323 (13%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+T+ Q+ +NR A+ + G+ +GD VAL M E+ C++ G +K+G VA INT
Sbjct: 43 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRL 102
Query: 128 R----QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
IL S K +IYGA + + ++
Sbjct: 103 AAPEVSFILSDS----GSKVVIYGAPSAPVIDAIRAQADPPGTVTDW----------IGA 148
Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ 243
L E L +A P + D L +YTSGTTG PK V TH A S
Sbjct: 149 DSLAERLRSAAADEPAVECG---GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST 205
Query: 244 TGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV--- 300
+ D + LP++H A I + G T++ +F A+ W ++ +
Sbjct: 206 IDVRYRDRLLLPLPMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIGGA 264
Query: 301 --AQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGA 356
A + VPE E + I G + + + + + + + Y
Sbjct: 265 VPAILNF-----MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI--EVVQGYAL 317
Query: 357 TE--GNANLMNAD---GKVGAVG 374
TE G L+ ++ K G+ G
Sbjct: 318 TESCGGGTLLLSEDALRKAGSAG 340
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 153 bits (388), Expect = 3e-41
Identities = 81/420 (19%), Positives = 134/420 (31%), Gaps = 76/420 (18%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
++T+ ++ + A + VA++ E + GV A +N
Sbjct: 48 SLTYAELAAAAGATAG-----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKS 102
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
L H + + ++ + P L +
Sbjct: 103 GDKELAHILSDSAPSLVLAPPDAELP---------------------PALGALERVDVDV 141
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
V + D +YTSGTTG PK AV+ + T
Sbjct: 142 RARGAVPEDGADDG-------DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWT 194
Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV-----AQ 302
+DV+ LPL+H G +LGI L G +V +FS + T+
Sbjct: 195 GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAA-RELNDGATMLFGVPTM 253
Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN 360
Y + L A PE + ++++ L E G R+ E YG TE
Sbjct: 254 YHR-IAETLPADPELAKALA-GARLLVSGSAALPVHDHERIAAATGR-RVIERYGMTETL 310
Query: 361 ANL-MNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-I 416
N + ADG + G VG + +P + L+ + + + E G I
Sbjct: 311 MNTSVRADGEPRAGTVG----VPLPGVELRLV--EEDGTP--------IAALDGESVGEI 356
Query: 417 LIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT 475
+ R + F Y ++ A+ D F TGD+ ++D Y R
Sbjct: 357 QV------RGPNLFTEYLNRPDATAAAFTE------DGFFRTGDMAVRDPDGYVRIVGRK 404
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 148 bits (377), Expect = 1e-39
Identities = 55/322 (17%), Positives = 107/322 (33%), Gaps = 33/322 (10%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+ T+ + ++ +A + V L+++ + + + + A INT
Sbjct: 26 SYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRL 82
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+ + + ++ + + I L ++ S+ I
Sbjct: 83 TPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGLLDNTMGIQYDT 141
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
V +SP+ + + D +A I +TSGTTG KA T AI + G
Sbjct: 142 SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGF 201
Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
D + LP+YH +G + + ++ G TV I KF+A T
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLR-AVIEGFTVRIVDKFNAEQILTMIKNERITH------ 254
Query: 307 MCRYLLAVP-------EKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT 357
+ VP ++ ++++ ++ G L + E + I +G T
Sbjct: 255 ----ISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQYNL--PIYNSFGMT 308
Query: 358 E--GNANLMN---ADGKVGAVG 374
E + VG
Sbjct: 309 ETCSQFLTATPEMLHARPDTVG 330
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 148 bits (376), Expect = 3e-39
Identities = 81/425 (19%), Positives = 158/425 (37%), Gaps = 58/425 (13%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
++ F ++ + + ++A+ KG+++G+ V + + +YV L ++ IN
Sbjct: 52 SMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMY 111
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+ L H + +E ++ + L E V + ++ G ++V+ S
Sbjct: 112 KSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSG---S 168
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
E+ V +P ED +A I YT GTTG+PK ++TH A+ TGL
Sbjct: 169 EDFENVKV-NPEED---------VALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGL 218
Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
+ D + +P++H + + + G+ V+ F+ ++ KY T + +
Sbjct: 219 SHMDTIVGCMPMFH-SAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPP 277
Query: 307 MCRYLLAVPEKPEDTQH--SVKMMIGNG--LRPQVWEPFQKRFGLD------RICEFYGA 356
L+ E T +K+ + P + E K R + +G
Sbjct: 278 ALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGM 337
Query: 357 TE----GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCIPCK 410
TE N K G + + + +I E + + G + I
Sbjct: 338 TEACPMVTTNPPLRLDKSTTQG----VPMSDIELKVI--SLEDGRELGVGESGEIVI--- 388
Query: 411 AEEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGDAAFNTGDILIKDKFQYF 469
R + F GY + K +++ + F TGD+ D+ +
Sbjct: 389 --------------RGPNIFKGYWKREKENQECWWYDEKGRK--FFRTGDVGFIDEEGFL 432
Query: 470 YFKDR 474
+F+DR
Sbjct: 433 HFQDR 437
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 147 bits (374), Expect = 3e-39
Identities = 65/341 (19%), Positives = 108/341 (31%), Gaps = 41/341 (12%)
Query: 52 LFVRTIREVPMTGAYKY-----TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE 105
+ R P A +T ++ +A + GL+ VA+ +
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 106 YVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS 165
V L L ++G V A +N + L IK E A + + + S G
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-QVADAIFQSGSGAR 125
Query: 166 LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPK 224
+ G + + D + + A+I YTSGTTGLPK
Sbjct: 126 IIFLGDLVRDGEPYSYGPPIEDPQREP----------------AQPAFIFYTSGTTGLPK 169
Query: 225 AAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282
AA++ + + +S + +VV +PLYH G + L T V+
Sbjct: 170 AAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE 229
Query: 283 KFSASNFWKDCIKYNCTV-----AQYIGEMCRYLLAVPEKPEDTQ--HSVKMMIGNG--L 333
+F + + + T L A + S++ + G +
Sbjct: 230 EFRPVDALQLVQQEQVTSLFATPTHLDA-----LAAAAAHAGSSLKLDSLRHVTFAGATM 284
Query: 334 RPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVG 374
V E + YG TE +L K G
Sbjct: 285 PDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMRQPKTGTEM 324
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 147 bits (373), Expect = 6e-39
Identities = 88/419 (21%), Positives = 165/419 (39%), Gaps = 44/419 (10%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
++ + + S + ++ GL +AL E E+ + IGV A N
Sbjct: 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIY 111
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
L+HS+ +++ + + + + V+ ++ I + T +
Sbjct: 112 TLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK 171
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH---VRAMFMAISGRYQ 243
P S + ++ + +++A I +SG+TGLPK +TH V A Y
Sbjct: 172 RNTPPGFQASSFKTVEVD-RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG 230
Query: 244 TGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
++ V T +P +H G+ L+ G VV+ +KF F K Y CT
Sbjct: 231 NQVSPGTAVLTVVPFHH-GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVIL 289
Query: 304 IGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE-GN 360
+ + L + ++ + G L +V E +RF L + + YG TE +
Sbjct: 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349
Query: 361 ANLMNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCIPCKAEEPGI 416
A ++ +G K GA G + +P + +I D +T + + N+ G +C+
Sbjct: 350 AIIITPEGDDKPGASGKV----VPLFKAKVI--DLDTKKSLGPNRRGEVCV--------- 394
Query: 417 LIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
+ GY + +A+++ I + H TGDI D+ ++F+ DR
Sbjct: 395 --------KGPMLMKGYVNNPEATKELIDEEGWLH------TGDIGYYDEEKHFFIVDR 439
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 147 bits (374), Expect = 8e-39
Identities = 95/432 (21%), Positives = 163/432 (37%), Gaps = 64/432 (14%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFINTN 126
TF ++ +S++ ANFF G+ +GD V L ++ + + + CM LGL K+G +A
Sbjct: 86 IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM-LGLHKLGAIAVPATHM 144
Query: 127 QRQHILIHSIKVAECKAII--YGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
+ +++ I+ A K I+ ++ E + E I L A +
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRK 204
Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS-GRYQ 243
L+E P + K D ++SGT G PK + I +Y
Sbjct: 205 ELEESSPIFERPTGEVS---TKNEDICLVYFSSGTAGFPKMVEHDN-TYPLGHILTAKYW 260
Query: 244 TGLTSDDVVYTTL-P--LYHTAGGLLGIGQCLLGGSTVVI--RSKFSASNFWKDCIKYNC 298
+ D + YT G L G + G V + +F A N + KY
Sbjct: 261 QNVEDDGLHYTVADSGWGKCVWGKLYGQ---WIAGCAVFVYDYDRFEAKNMLEKASKYGV 317
Query: 299 TVAQYIGEMC------RYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRI 350
T C R+L+ + ++K + G L P+V+ F + G+ ++
Sbjct: 318 TT------FCAPPTIYRFLIKEDLSHYNFS-TLKYAVVAGEPLNPEVFNRFLEFTGI-KL 369
Query: 351 CEFYGATEGN---ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG-LC 406
E +G TE A + K G++G P Y + L+ D + ++G +
Sbjct: 370 MEGFGQTETVVTIATFPWMEPKPGSIGK----PTPGYKIELM--DRDGRLCEVGEEGEIV 423
Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDK 465
I +P +G+ F Y D + +E+ Y +TGD+ D+
Sbjct: 424 INTMEGKP---VGL---------FVHYGKDPERTEETWHDGYY-------HTGDMAWMDE 464
Query: 466 FQYFYFKDRTGD 477
Y +F R D
Sbjct: 465 DGYLWFVGRADD 476
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 146 bits (372), Expect = 1e-38
Identities = 88/424 (20%), Positives = 165/424 (38%), Gaps = 44/424 (10%)
Query: 64 GAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122
+ +T+ + + S R+A K GL + + E ++ LG IGV A
Sbjct: 45 AHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAP 104
Query: 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPS 182
N + L++S+ +++ + + + + V+ +P I +
Sbjct: 105 ANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSM 164
Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH---VRAMFMAI 238
T + LP + ++ +A I +SG+TGLPK + H A
Sbjct: 165 YTFVTSHLPPGFNEYDFVPESFDRDKT-IALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223
Query: 239 SGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNC 298
+ + D + + +P +H G+ L+ G VV+ +F F + Y
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHH-GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKI 282
Query: 299 TVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGA 356
A + + + + ++ + G L +V E KRF L I + YG
Sbjct: 283 QSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGL 342
Query: 357 TE-GNANLMNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCIPCKA 411
TE +A L+ +G K GAVG + +PF+ ++ D +T + + N+ G LC+
Sbjct: 343 TETTSAILITPEGDDKPGAVGKV----VPFFEAKVV--DLDTGKTLGVNQRGELCV---- 392
Query: 412 EEPGILIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFY 470
R +GY + +A+ I ++ + H +GDI D+ ++F+
Sbjct: 393 -------------RGPMIMSGYVNNPEATNALIDKDGWLH------SGDIAYWDEDEHFF 433
Query: 471 FKDR 474
DR
Sbjct: 434 IVDR 437
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 137 bits (348), Expect = 3e-35
Identities = 55/334 (16%), Positives = 105/334 (31%), Gaps = 53/334 (15%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+++ ++ ++ +A + +G++ G+ + + E + L K+GV +
Sbjct: 50 QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSH 109
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
++ L E +I S + + LL+
Sbjct: 110 QRSELNAYASQIEPALLI-----------ADRQHALFSGDDFLNTFVTEHSSIRVVQLLN 158
Query: 188 EE----LPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRY 242
+ L + + P+D++AY + GTTG PK TH +
Sbjct: 159 DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218
Query: 243 QTGLTSDDVVYTTLPLYHTAG----GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNC 298
T +P H G LG L G TVV+ + SA+ + K+
Sbjct: 219 ICQFTQQTRYLCAIPAAHNYAMSSPGSLG---VFLAGGTVVLAADPSATLCFPLIEKHQV 275
Query: 299 TVAQYIGEMCRYLLAVP---------EKPEDTQH---SVKMMIGNG--LRPQVWEPFQKR 344
V VP +++ S+K++ G L +
Sbjct: 276 NV----------TALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE 325
Query: 345 FGLDRICEFYGATEGNANLMNADG----KVGAVG 374
G ++ + +G EG N D + G
Sbjct: 326 IGC-QLQQVFGMAEGLVNYTRLDDSAEKIIHTQG 358
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 135 bits (343), Expect = 7e-35
Identities = 75/422 (17%), Positives = 137/422 (32%), Gaps = 58/422 (13%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
+++ S +A KGL +GD + + E+ ++ L K GVV + RQ+ L
Sbjct: 60 ELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYEL 119
Query: 133 IHSIKVAECKAIIY-----GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
IK + K +I ++ + + D + + +L
Sbjct: 120 NAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPA 179
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
E + S+ D++A+ + G+TG PK TH + + GL
Sbjct: 180 ETFVDFSSTPA----------DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGL 229
Query: 247 TSDDVVYTTLPLYHTAG----GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
S+ + LP H G LG L G VV+ N + ++ +A
Sbjct: 230 NSNTRLLCALPAPHNFMLSSPGALG---VLHAGGCVVMAPNPEPLNCFSIIQRHQVNMAS 286
Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGN 360
+ L + +D S+K++ G + + ++ + +G EG
Sbjct: 287 LVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-KLQQVFGMAEGL 345
Query: 361 ANLMNADG----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGI 416
N D G P IK I ++ E G+
Sbjct: 346 VNYTRLDDSDEQIFTTQGR------PISSDDEIK--------IVDEQYR--EVPEGEIGM 389
Query: 417 LIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT 475
L +R F GY + + + + Y + +GD++ + R
Sbjct: 390 LA-----TRGPYTFCGYYQSPEHNSQVFDEDNYYY------SGDLVQRTPDGNLRVVGRI 438
Query: 476 GD 477
D
Sbjct: 439 KD 440
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 133 bits (336), Expect = 7e-34
Identities = 101/435 (23%), Positives = 166/435 (38%), Gaps = 70/435 (16%)
Query: 64 GAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122
GA T+ VE + R+A+ G+Q+GD + LF+ PE+V +LG S G +
Sbjct: 44 GANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITA 103
Query: 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPS 182
N L K + K +I A E + + + + + L
Sbjct: 104 ANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE-SDVKVMCVDS---APDGCLHF 159
Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH----VRAMFMA 237
+ L + E P DI P D + + Y+SGTTGLPK ++TH
Sbjct: 160 SELTQADENEA----PQVDI---SPDD-VVALPYSSGTTGLPKGVMLTHKGLITSVAQQV 211
Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
S+DV+ LP++H + L G+ ++I KF + KY
Sbjct: 212 DGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271
Query: 298 CTVAQ-----YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRI 350
++A + + P+ + S++M+ G L ++ + + +F R+
Sbjct: 272 VSIAPVVPPVMMS-----IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARL 326
Query: 351 CEFYGATE----GNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RN 401
+ YG TE L A D K GA G + + + ++ DPET + RN
Sbjct: 327 GQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTV----VRNAEMKIV--DPETGASLPRN 380
Query: 402 KDG-LCIPCKAEEPGILIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGD 459
+ G +CI R + GY D +A+ + I + + H TGD
Sbjct: 381 QPGEICI-----------------RGDQIMKGYLNDPEATSRTIDKEGWLH------TGD 417
Query: 460 ILIKDKFQYFYFKDR 474
I D + DR
Sbjct: 418 IGYIDDDDELFIVDR 432
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 132 bits (334), Expect = 4e-33
Identities = 93/440 (21%), Positives = 162/440 (36%), Gaps = 72/440 (16%)
Query: 64 GAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122
G + T+ V S +IA F G+ + D V L + PE+V +L S G A
Sbjct: 83 GPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATA 142
Query: 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPS 182
N + K + K II A + + +++ + + P +
Sbjct: 143 ANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR 202
Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH----VRAMFMA 237
T L + E S + +I P D + + Y+SGTTGLPK ++TH
Sbjct: 203 FTELTQSTTEASEVIDSVEI---SPDD-VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258
Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
SDDV+ LP++H + L G+ ++I KF + + +
Sbjct: 259 DGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCK 318
Query: 298 CTVAQYIGEMCRYLLAVP-------EKPEDTQH---SVKMMIGNG--LRPQVWEPFQKRF 345
T VP + E ++ S++++ L ++ + +F
Sbjct: 319 VT----------VAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKF 368
Query: 346 GLDRICEFYGATE----GNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSE 397
++ + YG TE +L A K GA G + + + ++ DP+T +
Sbjct: 369 PNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTV----VRNAEMKIV--DPDTGD 422
Query: 398 PI-RNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAA 454
+ RN+ G +CI R GY + A+ + I ++ + H
Sbjct: 423 SLSRNQPGEICI-----------------RGHQIMKGYLNNPAATAETIDKDGWLH---- 461
Query: 455 FNTGDILIKDKFQYFYFKDR 474
TGDI + D + DR
Sbjct: 462 --TGDIGLIDDDDELFIVDR 479
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 130 bits (329), Expect = 6e-33
Identities = 77/427 (18%), Positives = 143/427 (33%), Gaps = 63/427 (14%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
++ +++ ++R+A F+ G+Q+ D V + + E+ + L ++G + F +
Sbjct: 50 HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSH 109
Query: 128 RQHILIHSIKVAECKAIIY-----GAELSEALTEVKDSIPGI-SLYAAGTRRKPQAKVLP 181
R + + + AE A I G + +V+ +P + ++ AG + L
Sbjct: 110 RSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--EEFLPLE 167
Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR 241
+LPEV SD + G+TGL K TH ++
Sbjct: 168 DLHTEPVKLPEVK------------SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV 215
Query: 242 YQTGLTSDDVVYTTLPLYHTAG----GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
L V LP+ H G+LG L G VV+ S + + +
Sbjct: 216 EVCWLDHSTVYLAALPMAHNYPLSSPGVLG---VLYAGGRVVLSPSPSPDDAFPLIEREK 272
Query: 298 CTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYG 355
T+ + + + D S++++ G + + FG + + +G
Sbjct: 273 VTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQVFG 331
Query: 356 ATEGNANLMNADG----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKA 411
EG N D V G P P + + + K
Sbjct: 332 MAEGLVNYTRLDDPEEIIVNTQGK------PMSPYDESR--------VWDDHDR--DVKP 375
Query: 412 EEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFY 470
E G L+ +R GY + + + + TGDI+ + Y
Sbjct: 376 GETGHLL-----TRGPYTIRGYYKAEEHNAASFTEDGFYR------TGDIVRLTRDGYIV 424
Query: 471 FKDRTGD 477
+ R D
Sbjct: 425 VEGRAKD 431
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 92.8 bits (231), Expect = 3e-20
Identities = 54/311 (17%), Positives = 113/311 (36%), Gaps = 60/311 (19%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA--AFINT 125
T+T+ Q++ H+ IA +++G + GD V L + +LG G +A +
Sbjct: 40 TMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPA 99
Query: 126 NQRQHILIHSI-KVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
++ I ++ ++ A+ + T + + + +
Sbjct: 100 QEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA---------DELNTNPKFLKIPAIALES 150
Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGR 241
+ S + +A++ YTSG+T PK +++H + I
Sbjct: 151 IELNRSSSWQPTSIKSN--------DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS 202
Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF------WKDCI- 294
+ + + ++++ LP +H G + I + GG ++ S +F W I
Sbjct: 203 F--HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM---MSPFSFLQNPLSWLKHIT 257
Query: 295 KYNCTVAQ-----YIGEMC-RYLLAVPEKPEDTQH----SVKMMIGNG---LRPQVWEPF 341
KY T++ Y + C + + + E + S NG +R + E F
Sbjct: 258 KYKATISGSPNFAY--DYCVKRI-----REEKKEGLDLSSWVTAF-NGAEPVREETMEHF 309
Query: 342 QKRF---GLDR 349
+ F G +
Sbjct: 310 YQAFKEFGFRK 320
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 91.6 bits (228), Expect = 7e-20
Identities = 64/315 (20%), Positives = 105/315 (33%), Gaps = 67/315 (21%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN--- 124
+ + ++ + A S L++GD VAL E E+V + G+VA +
Sbjct: 49 QLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPM 108
Query: 125 --TNQRQHI--LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL 180
+ L + + AII G E + T P+ VL
Sbjct: 109 GVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAA-------------THDNPELHVL 155
Query: 181 PSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMA 237
+V+ + P + +AY+ YTSG+T P+ ++TH V A A
Sbjct: 156 SHAWFKALPEADVALQRPVPN--------DIAYLQYTSGSTRFPRGVIITHREVMANLRA 207
Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF------WK 291
IS L D + LP YH G + + + +V +F W
Sbjct: 208 ISHDGI-KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY---LRTQDFAMRPLQWL 263
Query: 292 DCI-KYNCTVAQ-----YIGEMC-RYLLAVPEKPEDTQH----SVKMMIGNG---LRPQV 337
I K TV+ Y E+C R + +D ++ G + +
Sbjct: 264 KLISKNRGTVSVAPPFGY--ELCQRRV-----NEKDLAELDLSCWRVAG-IGAEPISAEQ 315
Query: 338 WEPFQKRF---GLDR 349
F + F D
Sbjct: 316 LHQFAECFRQVNFDN 330
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 87.4 bits (217), Expect = 1e-18
Identities = 58/326 (17%), Positives = 105/326 (32%), Gaps = 66/326 (20%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-N 126
T+T+ Q+ + +A G GD V + EYV +LG + G +A ++
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 127 QRQHI--LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
+ + AI+ + + + + PG S ++
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES----------PPSIIEVDL 166
Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH------VRAMFMA 237
L + + K AY+ YTSG+T P VM+H +
Sbjct: 167 LDLDAPNGYTFKEDE--------YPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG 218
Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF------WK 291
+ + + LP YH G ++GI +LGG V+ S +F W
Sbjct: 219 YFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVL---TSPVSFLQRPARWM 275
Query: 292 DCI-KYNCTVAQ-----YIGEMC-RYLLAVPEKPEDTQH----SVKMMIGNG---LRPQV 337
+ + + E+ R +D ++ ++ +G ++
Sbjct: 276 HLMASDFHAFSAAPNFAF--ELAARRT-----TDDDMAGRDLGNILTIL-SGSERVQAAT 327
Query: 338 WEPFQKRF---GLDR--ICEFYGATE 358
+ F RF L I Y E
Sbjct: 328 IKRFADRFARFNLQERVIRPSYWLAE 353
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 79.1 bits (196), Expect = 6e-16
Identities = 59/307 (19%), Positives = 112/307 (36%), Gaps = 51/307 (16%)
Query: 73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQR 128
+V + R+ ++ G+ GD VA ++ + + +G V N +
Sbjct: 52 EVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEI 111
Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD- 187
+IL H AE K +++ L + ++ + + + + P L
Sbjct: 112 AYILNH----AEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP-------EGYLAY 160
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF---MAISGRYQT 244
EE + ++ + + YT+GTTGLPK V +H RA+ +A S T
Sbjct: 161 EEA--LGEEADPVRVPERAAC---GMAYTTGTTGLPKGVVYSH-RALVLHSLAASLVDGT 214
Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
L+ DVV +P++H L L+G V+ + ++ + T
Sbjct: 215 ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT--- 271
Query: 305 GEMCRYLLAVP-----------EKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRIC 351
VP + ++++G G + F +R G++ +
Sbjct: 272 -------AGVPTVWLALADYLESTGHRLKTLRRLVVG-GSAAPRSLIARF-ERMGVE-VR 321
Query: 352 EFYGATE 358
+ YG TE
Sbjct: 322 QGYGLTE 328
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 72.2 bits (178), Expect = 1e-13
Identities = 47/301 (15%), Positives = 87/301 (28%), Gaps = 58/301 (19%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF--INTN---QR-QHI 131
S+ IA F S L V +F + + ++ L+K G A+ ++ + +R I
Sbjct: 39 SDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSG--HAYIPVDVHSAPERILAI 96
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK-PQAKVLPSTTLLDEEL 190
+ + + P + + ++ L E
Sbjct: 97 I-------------------------EIAKPSLIIAIEEFPLTIEGISLV----SLSEIE 127
Query: 191 PEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHV----RAMFMAISGRYQTG 245
A+ P E K D Y I+TSGTTG PK ++H +M +
Sbjct: 128 SAKLAEMPYERTHSVKGDD-NYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF--D 184
Query: 246 LTSDDVVYTTLPLYHTAG---GLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCT 299
+ + ++ L G T+ K + +
Sbjct: 185 VPKQPQM----LAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVG 240
Query: 300 VAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT 357
+ + + + ++ G L +RF +I YG T
Sbjct: 241 IWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPT 300
Query: 358 E 358
E
Sbjct: 301 E 301
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 71.1 bits (175), Expect = 4e-13
Identities = 54/297 (18%), Positives = 97/297 (32%), Gaps = 54/297 (18%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF--INTN---QR-QHI 131
+NRIA + G +G VAL+ + E V LG+ K G AA+ ++ R ++
Sbjct: 499 ANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG--AAYLPVDPKLPEDRISYM 556
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
L S ++ E+ E E+ + L +
Sbjct: 557 LADS----AAACLLTHQEMKEQAAELPYTGT----------------------TLFIDDQ 590
Query: 192 EVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDD 250
+ ++ P+D AY +YTSGTTG PK + TH + + + D
Sbjct: 591 TRFEEQASDPATAIDPND-PAYIMYTSGTTGKPKGNITTH-ANIQGLVKHVDYMAFSDQD 648
Query: 251 VVYTTLPLYHTA----GGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQY 303
L + +L + ++I + ++ N V
Sbjct: 649 TF-----LSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFA 703
Query: 304 IGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
+ L + ED ++ ++ G + G ++ YG TE
Sbjct: 704 TTALFNLLT---DAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTE 757
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 68.3 bits (168), Expect = 2e-12
Identities = 33/189 (17%), Positives = 59/189 (31%), Gaps = 20/189 (10%)
Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAM---FMA 237
+ E + + K + Y IYTSG+TG PK ++ +
Sbjct: 117 QIQTVSAEELLENEGGSVSQDQWVKEHE-TFYIIYTSGSTGNPKGVQISA-ANLQSFTDW 174
Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAG---GLLGIGQCLLGGSTVVIRSK---FSASNFWK 291
I + ++ + ++ + CL G T+ +K ++
Sbjct: 175 ICADF--PVSGGKIF----LNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFE 228
Query: 292 DCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDR 349
+ K V + L P +D + G L V + +RF +
Sbjct: 229 ELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAK 288
Query: 350 ICEFYGATE 358
I YG TE
Sbjct: 289 IFNTYGPTE 297
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 67.5 bits (166), Expect = 3e-12
Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 23/215 (10%)
Query: 157 VKDSIPGISL-YAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-I 214
++S + L A T +++ + + + + K T + + D+ Y I
Sbjct: 94 AENSGAKLLLSATAVTVTDLPVRIV---SEDNLKDIFFTHKGNTPNPEHAVKGDENFYII 150
Query: 215 YTSGTTGLPKAAVMTHVRAM---FMAISGRYQTGLTSDDVVYTTLPLYHTAG---GLLGI 268
YTSG+TG PK +T+ + + L + V ++ I
Sbjct: 151 YTSGSTGNPKGVQITY-NCLVSFTKWAVEDF--NLQTGQVF----LNQAPFSFDLSVMDI 203
Query: 269 GQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSV 325
L+ G T+ K + + + + V L E ++
Sbjct: 204 YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNM 263
Query: 326 KMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
K + G L +V +RF I YG TE
Sbjct: 264 KTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 59.7 bits (144), Expect = 6e-10
Identities = 35/222 (15%), Positives = 58/222 (26%), Gaps = 33/222 (14%)
Query: 207 PSDKLAYIY-TSGTTGLPKAAVMTH----VRAMFMAISGRYQTGLTSDDVVYTTLPLYHT 261
P+D +Y + GTTG PK V + +++ G S + + H
Sbjct: 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHI 148
Query: 262 AGGLLGIGQCLLGGSTVVIR-------------SKFSASNFWKDCIKYNCTVAQYIGE-- 306
G + LGG I + + +
Sbjct: 149 VGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRF 208
Query: 307 ------MCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLD-RICEFYGAT 357
+ R LL PE + S+ + G L + D YG+T
Sbjct: 209 LVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGST 268
Query: 358 EGNANLMNADGKVGAVGYIPYIAIPFYPVGLIK-CDPETSEP 398
+ + I F P D T++
Sbjct: 269 SALGVSRSLLI--TSESQ-QVIYDSFSPFITYDVVDSITAQT 307
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 57.6 bits (140), Expect = 5e-09
Identities = 33/218 (15%), Positives = 63/218 (28%), Gaps = 25/218 (11%)
Query: 157 VKDSIPGISLYAAGTRRK-PQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-I 214
++DS ++ ++ E + T DI N P + AY +
Sbjct: 122 LRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYLL 181
Query: 215 YTSGTTGLPKAAVMTH------VRAM--FMAISGRYQTGLTSDDVVYTTLPLYHTAG--- 263
YTSG+TG PK ++ A + L +
Sbjct: 182 YTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKF----LCLASRAFDV 237
Query: 264 GLLGIGQCLLGGSTVVIRSK-FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQ 322
+ + G V + + + + T A + + VPE
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----DA 293
Query: 323 HSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
+ + G + P+ + + + + YG TE
Sbjct: 294 PHLVYLGVGGEKMTPRTQQIWSSSDRV-ALVNVYGPTE 330
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 57.1 bits (139), Expect = 6e-09
Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 176 QAKVLPSTTLLDEELPEVSAKSPTEDI--------------KKNKPSDKLAY-IYTSGTT 220
QA++L + L + + E +K +D LAY IYTSGTT
Sbjct: 136 QARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTD-LAYVIYTSGTT 194
Query: 221 GLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG---GLLGIGQCLLGG 275
G PK ++ H + + + +T D + + + + + LL G
Sbjct: 195 GNPKGTMLEHKGISNLKVFFENSL--NVTEKDRI----GQFASISFDASVWEMFMALLTG 248
Query: 276 STVVIRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--G 330
+++ I K F + + TV +L + S++ +I G
Sbjct: 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD------PERILSIQTLITAG 302
Query: 331 NGLRPQVWEPFQKRFGLDRICEFYGATE 358
+ P + ++++ YG TE
Sbjct: 303 SATSPSLVNKWKEKV---TYINAYGPTE 327
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 7e-09
Identities = 70/538 (13%), Positives = 155/538 (28%), Gaps = 161/538 (29%)
Query: 26 VDTE-NSLDLKQLISGMQKTLPTYARPLFVR---------TIREVPMTGAYKYTVTFQVE 75
+D E + + L + FV + + + + +
Sbjct: 7 MDFETGEHQYQY-----KDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHII--MSK 58
Query: 76 DHSNRIANFFKSKGLQRGDAVALFMEG--QPEYVCMWLGLSKI--------GVVAAFINT 125
D + F + ++ + V F+E + Y +L +S I + +I
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFL-MSPIKTEQRQPSMMTRMYIEQ 115
Query: 126 NQRQHILIHSIK---VAECKAIIYGAELSEALTEVKDSIPGISLYA-AGTRRKPQAK-VL 180
R + V+ + + +L +AL E++ + + + G+ K +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYL---KLRQALLELRPA-KNVLIDGVLGS-----GKTWV 166
Query: 181 PSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG 240
L ++ + K K+ ++ P+ V+ ++ + I
Sbjct: 167 ALDVCLSYKV-------------QCKMDFKIFWL-NLKNCNSPET-VLEMLQKLLYQIDP 211
Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGI------GQCLLGGSTVVIRSKFSASNFW-KDC 293
+ + SD L ++ L + CLL V+ N
Sbjct: 212 NWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLL------NVQNAKA 258
Query: 294 IKY---NC---------TVAQYIGEMCRY------------------LLA--VPEKPEDT 321
+C V ++ LL + +P+D
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 322 QHSVKM-------MIGNGLR--PQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
V +I +R W+ + K D++ ++ L A+ +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTTIIESSL--NVLEPAEYR--- 372
Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI----PCKAEEPGILIGMIKESRAES 428
+++ F P S I L + K++ ++ + K S E
Sbjct: 373 -KMFDRLSV-F---------PP-SAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 429 HFNGY---------------ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYF 471
++ A + I+ + Y+ F++ D++ QYFY
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKT-FDSDDLIPPYLDQYFYS 475
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 51.0 bits (123), Expect = 6e-07
Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 49/185 (26%)
Query: 78 SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF--INTN---QR-QHI 131
+ +++++ Q G + ++ E E + L + G + I+ +
Sbjct: 62 AEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSG--HHYLYIDLKQPAAWNAEL 119
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
+ + L + T + LP
Sbjct: 120 C-------------------------RQVDCRLILDCSTTPTPANGLPC----VPVRHLP 150
Query: 192 EVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH---VRAMFMAISGRYQTGLT 247
A +D++AY ++SGTTG PKA TH R
Sbjct: 151 AAPASVARPCF----AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG--QSFL--AFA 202
Query: 248 SDDVV 252
Sbjct: 203 PQMRF 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 68/371 (18%), Positives = 118/371 (31%), Gaps = 110/371 (29%)
Query: 17 EGKAGMAAIV----DTENSLD------------LKQLISGMQKTL------PTYARPLFV 54
EG A + AI +T++ + + LI +TL A +F
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 55 RT--IRE--------------------VPMTGAYK---YTVTFQVEDHSNRIANFFK--- 86
+ I E P+ G + Y VT ++ +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLK 268
Query: 87 -----SKGLQRGDAVAL------FMEGQPEYVCMWLGLSKIGVVA--AFINTNQRQHILI 133
S+GL A+A F + + + L IGV A+ NT+ IL
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITV---LFFIGVRCYEAYPNTSLPPSILE 325
Query: 134 HSIKVAECKA----IIYG---AELSEALTEVKDSIPG-----ISLYAAGTRRKPQAKVL- 180
S++ E I ++ + + + +P ISL + V+
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-----AKNLVVS 380
Query: 181 -PSTTL--LDEELPEVSAKSPTEDIKKNKPSD-KLAYIYTSGTTGLPKAAVMTHVRAMFM 236
P +L L+ L + A D + S+ KL + LP A+ H +
Sbjct: 381 GPPQSLYGLNLTLRKAKA-PSGLDQSRIPFSERKLKF----SNRFLPVASPF-HSHLLVP 434
Query: 237 AISGRYQTGLTSDDVVYTT----LPLYHTAGG--LLGIGQCLLGGSTV--VIRSKFSASN 288
A L ++V + +P+Y T G L +L GS ++
Sbjct: 435 ASD-LINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-----RVLSGSISERIVDCIIRLPV 488
Query: 289 FWKDCIKYNCT 299
W+ ++ T
Sbjct: 489 KWETTTQFKAT 499
Score = 37.7 bits (87), Expect = 0.009
Identities = 39/239 (16%), Positives = 64/239 (26%), Gaps = 81/239 (33%)
Query: 150 LSEALTEVKDSIPGISLYAAGTRRKPQ-AKVLPSTT---LLDEELPEVSAKSPTEDIKKN 205
LS E +P + + ++ + Q K+LP T D+E P +P E
Sbjct: 11 LSHGSLEHVLLVP-TASFFIASQLQEQFNKILPEPTEGFAADDE-PT----TPAE----- 59
Query: 206 KPSDKLA--YI-YTSGTTGLPKAAVMTHV-RAMFMAISGRYQTGLTSDDVVYTTLPLYHT 261
L ++ Y S K V Y L +D+ H
Sbjct: 60 -----LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---LEGNDI--------HA 103
Query: 262 -AGGLLGIGQCLLGGSTVVIRSKFSA-------------SNFWK---------------- 291
A LL L + +I++ +A S ++
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 292 ----DCIK--------YNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVW 338
D + Y+ V I L + D + + GL W
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK----VFTQGLNILEW 218
Score = 37.3 bits (86), Expect = 0.012
Identities = 33/245 (13%), Positives = 64/245 (26%), Gaps = 90/245 (36%)
Query: 111 LGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAG 170
G S + +V N ++ IH +G E + + E ++ ++
Sbjct: 1657 YGFSILDIV-----INNPVNLTIH-----------FGGEKGKRIRENYSAM----IFETI 1696
Query: 171 TRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH 230
K + + + ++E + +S + T T P A+
Sbjct: 1697 VDGKLKTEKIFKE--INEHSTSYTFRSEKGLLSA-----------TQFTQ--P--ALTLM 1739
Query: 231 VRAMFMAISGRYQTGLTSDDVV--------YTTLPLYHTAG--------------GLL-- 266
+A F + + GL D Y L A G+
Sbjct: 1740 EKAAFEDLKSK---GLIPADATFAGHSLGEYAAL--ASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 267 -----------GIGQCLLGGSTVVIRSKFSASNFWKDCIK-----------YNCTVAQYI 304
G + V A + + + YN QY+
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 305 --GEM 307
G++
Sbjct: 1855 AAGDL 1859
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 40.2 bits (95), Expect = 0.001
Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 58/196 (29%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+++ ++ R AN G+++GD VA++M PE L ++IG
Sbjct: 107 HISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGA--------- 157
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTE-VKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
+HS +I+G EA+ + DS + + A R + +P +
Sbjct: 158 -----VHS--------VIFGGFSPEAVAGCIIDSSSRLVITADEGVRA--GRSIPLKKNV 202
Query: 187 DEELPEVSAKSPT----------------------EDIKKNKPS----------DKLAYI 214
D+ L + S D+ + D L +
Sbjct: 203 DDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFIL 262
Query: 215 YTSGTTGLPKAAVMTH 230
YTSG+TG PK + T
Sbjct: 263 YTSGSTGKPKGVLHTT 278
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 33.0 bits (76), Expect = 0.20
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 20/71 (28%)
Query: 207 PSDKLAYIY-TSGTTGLPKAAVMT----------HVRAMFMAISGRYQTGLTSDDVVYTT 255
P D+++ I+ +SGTTG P T R++ A G D V+ +
Sbjct: 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-------GARRGDKVHVS 140
Query: 256 LPLYH-TAGGL 265
Y GGL
Sbjct: 141 YG-YGLFTGGL 150
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 33.3 bits (77), Expect = 0.21
Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 56/194 (28%)
Query: 69 TVTF-QVEDHSNRIANFFK-SKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
++T+ ++ + ++A S G+++GD VA++M PE + L +S+IG
Sbjct: 113 SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA-------- 164
Query: 127 QRQHILIHS--------------IKVAECKAIIY-------GAELS------EALTEVKD 159
IHS I + K +I G + +AL E
Sbjct: 165 ------IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET-P 217
Query: 160 SIPGISLYAAGTRRKPQAKVLPSTTLLD----EELPEVSAKSPTEDIKKNKPSDKLAYIY 215
+ + +Y R+ V D E + P + P L +Y
Sbjct: 218 GVRHVLVY----RKTNNPSV-AFHAPRDLDWATEKKKYKTYYPCTPVDSEDP---LFLLY 269
Query: 216 TSGTTGLPKAAVMT 229
TSG+TG PK +
Sbjct: 270 TSGSTGAPKGVQHS 283
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 33.0 bits (76), Expect = 0.23
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 20/71 (28%)
Query: 207 PSDKLAYIY-TSGTTGLPKAAVMT----------HVRAMFMAISGRYQTGLTSDDVVYTT 255
P +++ ++ +SGTTG P T R++ A G D ++
Sbjct: 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-------GGRPGDTLHNA 142
Query: 256 LPLYH-TAGGL 265
Y GGL
Sbjct: 143 FG-YGLFTGGL 152
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 32.6 bits (75), Expect = 0.30
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 17/60 (28%)
Query: 216 TSGTTGLPKAAVMT----------HVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGL 265
+SGTTG P V + R ++M G+ DV + GGL
Sbjct: 94 SSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-------GIRKTDVFQNSSGYGMFTGGL 146
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.82
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 19/45 (42%)
Query: 127 QRQHI--LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAA 169
++Q + L S+K +Y DS P +++ A
Sbjct: 18 EKQALKKLQASLK-------LYAD----------DSAPALAIKAT 45
Score = 29.5 bits (65), Expect = 1.5
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 8/36 (22%)
Query: 35 KQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTV 70
KQ + +Q +L YA P A K T+
Sbjct: 19 KQALKKLQASLKLYA-D------DSAPAL-AIKATM 46
Score = 27.6 bits (60), Expect = 6.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 200 EDIKKNKPSDKLAYIYTSGTTGLPKAAV 227
+ +KK + S KL Y + P A+
Sbjct: 20 QALKKLQASLKL---YADDSA--PALAI 42
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 29.4 bits (67), Expect = 2.7
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 310 YLLAVPE---KPEDTQHSVKMMIGNGLRPQV 337
YL E KP QHSV+ + G++P
Sbjct: 181 YLSVTGELKTKP--LQHSVQELRRIGIQPDF 209
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 29.0 bits (66), Expect = 3.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 310 YLLAVPE---KPEDTQHSVKMMIGNGLRPQV 337
YL E KP TQHSV + G G++P +
Sbjct: 190 YLETSEEFKTKP--TQHSVATLRGVGIQPDI 218
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 28.6 bits (65), Expect = 4.8
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 317 KPEDTQHSVKMMIGNGLRPQV 337
KP TQHSVK ++ G++P +
Sbjct: 189 KP--TQHSVKELLSIGIQPDI 207
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP
synthetase, UTP, glutamine, amidotransferase, ligase,
phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A
3ihl_A*
Length = 294
Score = 27.6 bits (62), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 310 YLLAVPE---KPEDTQHSVKMMIGNGLRPQV 337
+ E KP TQ+SV+ + G GL P +
Sbjct: 207 QPSSTGEQKTKP--TQNSVRELRGLGLSPDL 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,305,257
Number of extensions: 447998
Number of successful extensions: 814
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 52
Length of query: 479
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 382
Effective length of database: 3,993,456
Effective search space: 1525500192
Effective search space used: 1525500192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)