RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8225
(479 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 182 bits (464), Expect = 1e-51
Identities = 77/436 (17%), Positives = 156/436 (35%), Gaps = 51/436 (11%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+++ ++ R AN G+++GD VA++M PE L ++IG V + I
Sbjct: 103 HISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGF 162
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+ I + + +I E A + + ++ T D
Sbjct: 163 SPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD 222
Query: 188 EELPE---------VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM-FMA 237
+ E + SP + D L +YTSG+TG PK + T + + A
Sbjct: 223 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 282
Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK----FSASNFWKDC 293
+ +Y D+ + T + G + L G+T ++ + + +
Sbjct: 283 TTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVV 342
Query: 294 IKYNCTVAQYIGEMCRYLLAVPEKPEDTQ--HSVKMMI--GNGLRPQVWEPFQKRFGLD- 348
K+ + R L+A +K + S++++ G + P+ WE + K+ G +
Sbjct: 343 DKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEK 402
Query: 349 -RICEFYGATEGNANLMN-----ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNK 402
+ + + TE ++ + K G+ PF+ V D E
Sbjct: 403 CPVVDTWWQTETGGFMITPLPGAIELKAGSATR------PFFGVQPALVDNEGH------ 450
Query: 403 DGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDIL 461
P + G ++I +A + F + ++ + +S + +GD
Sbjct: 451 -----PQEGATEGNLVITDSWPGQARTLFGDH-------ERFEQTYFSTFKNMYFSGDGA 498
Query: 462 IKDKFQYFYFKDRTGD 477
+D+ Y++ R D
Sbjct: 499 RRDEDGYYWITGRVDD 514
Score = 31.2 bits (70), Expect = 0.30
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 18 GKAGMAAIV----DTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYK 67
G+A A + + + ++ + ++K + A P + +P T + K
Sbjct: 552 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 605
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 158 bits (400), Expect = 8e-43
Identities = 79/431 (18%), Positives = 148/431 (34%), Gaps = 38/431 (8%)
Query: 69 TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
++T+ ++ + ++A G+++GD VA++M PE + L +S+IG + + +
Sbjct: 90 SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG 149
Query: 127 QRQHILIHSIKVAECKAII---------YGAELSEALTEVKDSIPGISLYAAGTRRKPQA 177
+ L I + K +I E + + PG+ R+
Sbjct: 150 FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV-YRKTNNP 208
Query: 178 KVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA 237
V + E D L +YTSG+TG PK + + A
Sbjct: 209 SVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA 268
Query: 238 IS-GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKF----SASNFWKD 292
+ RY +DV +T + G + LL G ++ + S +W
Sbjct: 269 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 328
Query: 293 CIKYNCTVAQYIGEMCRYLLAVPEKPEDTQH--SVKMMI--GNGLRPQVWEPFQKRFGLD 348
++ T R L + + S++ + G + +VWE + ++ G +
Sbjct: 329 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 388
Query: 349 R--ICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC 406
I + Y TE ++L+ + PF+ + + DP T E
Sbjct: 389 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEE-------- 440
Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
+ G+L ++ S + L + + TGD KDK
Sbjct: 441 -LNTSHAEGVLAV---KAAWPSFARTIWKN---HDRYLDTYLNPYPGYYFTGDGAAKDKD 493
Query: 467 QYFYFKDRTGD 477
Y + R D
Sbjct: 494 GYIWILGRVDD 504
Score = 30.6 bits (68), Expect = 0.51
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 16 VEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMT 63
++ K+ + D E K L+ ++K + +A P + + ++P T
Sbjct: 551 LKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKT 598
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 145 bits (367), Expect = 9e-39
Identities = 76/416 (18%), Positives = 148/416 (35%), Gaps = 31/416 (7%)
Query: 68 YTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
+ T+ +V + R+ ++ G+ GD VA ++ + + +G V N
Sbjct: 39 HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPR 98
Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
+ + + AE K +++ L + ++ + + Q V+
Sbjct: 99 LSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTV-----------QHFVVMDEKAP 147
Query: 187 DEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQT 244
+ L A D + YT+GTTGLPK V +H + +A S T
Sbjct: 148 EGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT 207
Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
L+ DVV +P++H L L+G V+ + ++ + T +
Sbjct: 208 ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGV 267
Query: 305 GEMCRYLLAVPEKPEDTQHSVK-MMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL 363
+ L E +++ +++G P+ +R G+ + + YG TE + +
Sbjct: 268 PTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGV-EVRQGYGLTETSPVV 326
Query: 364 MNADGKVGAVGYIPYIAIPFY-PVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMI 421
+ K + G P + +++G +P + G + +
Sbjct: 327 VQNFVKSHLESLSEEEKLTLKAKTG--LPIPLVRLRVADEEGRPVPKDGKALGEVQL--- 381
Query: 422 KESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ GY + + + L D F TGDI + D+ Y KDR D
Sbjct: 382 ---KGPWITGGYYGNEEATRSALT-----PDGFFRTGDIAVWDEEGYVEIKDRLKD 429
Score = 31.0 bits (69), Expect = 0.31
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 18 GKAGMAAIVDTENSLDLKQLISGM-QKTLPTYARPLFVRTIREVPMTGAYK 67
+ +A +V ++L + + + P E+P T A K
Sbjct: 467 QERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGK 517
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 144 bits (363), Expect = 3e-38
Identities = 78/419 (18%), Positives = 151/419 (36%), Gaps = 38/419 (9%)
Query: 69 TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
+T+ + + S R+A K GL + + E ++ LG IGV A N
Sbjct: 47 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 106
Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
+ L++S+ +++ + + + + V+ +P I + T +
Sbjct: 107 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVT 166
Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH---VRAMFMAISGRYQT 244
LP + ++ + +SG+TGLPK + H A +
Sbjct: 167 SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 226
Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
+ D + + +P +H G +G + G V++ +F F + Y A +
Sbjct: 227 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLV 285
Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNAN 362
+ + + ++ + G L +V E KRF L I + YG TE +
Sbjct: 286 PTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 345
Query: 363 LMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILI 418
++ D K GAVG +PF+ ++ D +T + + G + +
Sbjct: 346 ILITPEGDDKPGAVGK----VVPFFEAKVV--DLDTGK----------TLGVNQRGELCV 389
Query: 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
R +GY + + D ++GDI D+ ++F+ DR
Sbjct: 390 ------RGPMIMSGYVNNPEATNA-----LIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 437
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 118 bits (296), Expect = 3e-29
Identities = 65/455 (14%), Positives = 136/455 (29%), Gaps = 57/455 (12%)
Query: 35 KQLISGMQKTLPTYARP-----LFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFF 85
+Q + + T Y R LF + + P A +T+ ++ +N++A F
Sbjct: 6 EQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIF 65
Query: 86 KSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAII 145
KG+ + V + ME + L + K G I+ + + + + ++ + ++
Sbjct: 66 IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 125
Query: 146 YGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKN 205
L + ++ + + E + + T +
Sbjct: 126 TQKHLVHLIHNIQFNGQ----------------------VEIFEEDTIKIREGTNLHVPS 163
Query: 206 KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGL 265
K +D IYTSGTTG PK ++ H + + +T D + + A
Sbjct: 164 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW 223
Query: 266 LGIGQCLLGGSTVV-IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHS 324
L G S + ++ + ++ I + +
Sbjct: 224 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV---HLDPERILSIQ 280
Query: 325 VKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFY 384
+ G+ P + ++++ T + +G I P
Sbjct: 281 TLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGA---PIQ 337
Query: 385 PVGLIKCDPETSEPIRNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYA-DKKASEKK 442
+ D + G LCI E GY + + +K
Sbjct: 338 NTQIYIVDENLQLKSVGEAGELCI-----------------GGEGLARGYWKRPELTSQK 380
Query: 443 ILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
+ N + G+ + TGD + R +
Sbjct: 381 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN 415
Score = 38.3 bits (88), Expect = 0.002
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 13 IPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYK 67
+ + + + A +E + L+QL + LPTY P + + ++P+T K
Sbjct: 447 HKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGK 501
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 107 bits (268), Expect = 1e-25
Identities = 57/355 (16%), Positives = 110/355 (30%), Gaps = 18/355 (5%)
Query: 52 LFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV 107
L + A ++ +++ ++R+A F+ G+Q+ D V + + E+
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 108 CMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLY 167
+ L ++G + F + R + + + AE A I + SL
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYII--------PDAYSGFDYRSLA 141
Query: 168 AAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAV 227
+ P K + +E LP + + + K SD + G+TGL K
Sbjct: 142 RQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIP 201
Query: 228 MTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ-CLLGGSTVVIRSKFSA 286
TH ++ L V LP+ H L G VV+ S
Sbjct: 202 RTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSP 261
Query: 287 SNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKR 344
+ + + T+ + + + D S++++ G + +
Sbjct: 262 DDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV 321
Query: 345 FGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI 399
FG F A D + V P P + + +
Sbjct: 322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVN---TQGKPMSPYDESRVWDDHDRDV 373
Score = 35.0 bits (79), Expect = 0.023
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 18 GKAGMAAIVDTENSLDLKQLISGM-QKTLPTYARPLFVRTIREVPMTGAYK 67
G+ I+ + + +L + + ++ L Y P V + P TG K
Sbjct: 469 GERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGK 519
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 105 bits (263), Expect = 3e-25
Identities = 82/440 (18%), Positives = 137/440 (31%), Gaps = 57/440 (12%)
Query: 52 LFVRTIREVPMTGAYKY-----TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE 105
+ R P A +T ++ +A + GL+ VA+ +
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 106 YVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY--GAELSEALTEVKDSIPG 163
V L L ++G V A +N + L IK E A + G ++++A+ +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARI 126
Query: 164 ISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLP 223
I L L + S P ED ++ P+ YTSGTTGLP
Sbjct: 127 IFLGD-----------------LVRDGEPYSYGPPIEDPQRE-PAQPAFIFYTSGTTGLP 168
Query: 224 KAA--VMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281
KAA + + +S + +VV +PLYH G + L T V+
Sbjct: 169 KAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228
Query: 282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQH--SVKMMIGNG--LRPQV 337
+F + + + T L A + S++ + G + V
Sbjct: 229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAV 288
Query: 338 WEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSE 397
E + YG TE +L K G F V +++ E
Sbjct: 289 LETVHQHLP-GEKVNIYGTTEAMNSLYMRQPKTGTEMAPG----FFSEVRIVRIGGGVDE 343
Query: 398 PIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNT 457
+ G +I + + +A+ +K+ Y D A T
Sbjct: 344 IV-------------ANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390
Query: 458 GDILIKDKFQYFYFKDRTGD 477
+ R D
Sbjct: 391 PE-------GTVRILGRVDD 403
Score = 30.0 bits (66), Expect = 0.77
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 18 GKAGMAAIVDTEN-SLDLKQLISGMQKT-LPTYARPLFVRTIREVPMTGAYK 67
G++ A +V +L L + + + L + RP + ++P K
Sbjct: 441 GQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNK 492
>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 28.5 bits (64), Expect = 1.4
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 112 GLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGT 171
++IGV + NT + ++ +E + AEL +A+ V +I G + T
Sbjct: 9 NSNEIGVFSKLTNT-----YCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMT 63
Query: 172 RRKPQAKVLPSTTLLDEELPEVSAKSPTEDIK 203
+ ++P+ T D+EL + S + +K
Sbjct: 64 AGNRRGLLVPTQT-TDQELQHL-RNSLPDSVK 93
>d1et9a2 d.15.6.1 (A:96-204) Streptococcal superantigen Spe-H
{Streptococcus pyogenes [TaxId: 1314]}
Length = 109
Score = 25.9 bits (57), Expect = 5.1
Identities = 4/38 (10%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 446 NVYSHGDAAFNTGDILI----KDKFQY--FYFKDRTGD 477
++Y++ + ++ G + + + +YF + +
Sbjct: 48 DIYNNREQKYSKGTVTLDLNSGKDIVFDLYYFGNGDFN 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,756,011
Number of extensions: 81945
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 16
Length of query: 479
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 390
Effective length of database: 1,185,626
Effective search space: 462394140
Effective search space used: 462394140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)