BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8226
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H7H|A Chain A, Crystal Structure Of The Human Transcription Elongation
Factor Dsif, Hspt4HSPT5 (176-273)
Length = 120
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 27 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 80
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Transcription Elongation Factors Spt4-Spt5ngn Domain
Length = 200
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T ++F DGC NC + + CTS +F+G++ + P SWVAKW +
Sbjct: 13 VQTTNEFNRDGCPNCQGIFE--EAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSV 66
>pdb|2HXC|A Chain A, Crystal Structure Of The Benzylamine Complex Of Aromatic
Amine Dehydrogenase In N-Semiquinone Form
pdb|2HXC|B Chain B, Crystal Structure Of The Benzylamine Complex Of Aromatic
Amine Dehydrogenase In N-Semiquinone Form
pdb|2I0R|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Formamide Adduct
pdb|2I0R|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Formamide Adduct
Length = 361
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 73 FLHMKNSRDNVYNCTSSNFDGMI 95
F+H+ SR +VY+ T+ F GM+
Sbjct: 25 FMHLTESRVHVYDYTNGKFLGMV 47
>pdb|2AGL|A Chain A, Crystal Structure Of The Phenylhydrazine Adduct Of
Aromatic Amine Dehydrogenase From Alcaligenes Faecalis
pdb|2AGL|B Chain B, Crystal Structure Of The Phenylhydrazine Adduct Of
Aromatic Amine Dehydrogenase From Alcaligenes Faecalis
pdb|2AGW|A Chain A, Crystal Structure Of Tryptamine-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2AGW|B Chain B, Crystal Structure Of Tryptamine-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2AGX|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. P212121 Form
pdb|2AGX|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. P212121 Form
pdb|2AGY|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AGY|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AGZ|A Chain A, Crystal Structure Of The Carbinolamine Intermediate In
The Reductive Half-Reaction Of Aromatic Amine
Dehydrogenase (Aadh) With Tryptamine. F222 Form
pdb|2AGZ|B Chain B, Crystal Structure Of The Carbinolamine Intermediate In
The Reductive Half-Reaction Of Aromatic Amine
Dehydrogenase (Aadh) With Tryptamine. F222 Form
pdb|2AH0|A Chain A, Crystal Structure Of The Carbinolamine Intermediate In
The Reductive Half-Reaction Of Aromatic Amine
Dehydrogenase (Aadh) With Tryptamine. Monoclinic Form
pdb|2AH0|B Chain B, Crystal Structure Of The Carbinolamine Intermediate In
The Reductive Half-Reaction Of Aromatic Amine
Dehydrogenase (Aadh) With Tryptamine. Monoclinic Form
pdb|2AH1|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase (Aadh)
From Alcaligenes Faecalis
pdb|2AH1|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase (Aadh)
From Alcaligenes Faecalis
pdb|2IUP|A Chain A, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis
pdb|2IUP|B Chain B, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis
pdb|2IUQ|A Chain A, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2IUQ|B Chain B, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2IUR|A Chain A, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form A
Cocrystal
pdb|2IUR|B Chain B, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form A
Cocrystal
pdb|2IUV|A Chain A, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form B
pdb|2IUV|B Chain B, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form B
pdb|2OK4|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct Oxidized With Ferricyanide
pdb|2OK4|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct Oxidized With Ferricyanide
pdb|2I0T|A Chain A, Crystal Structure Of Phenylacetaldehyde Derived R-
Carbinolamine Adduct Of Aromatic Amine Dehydrogenase
pdb|2I0T|B Chain B, Crystal Structure Of Phenylacetaldehyde Derived R-
Carbinolamine Adduct Of Aromatic Amine Dehydrogenase
pdb|2OIZ|A Chain A, Crystal Structure Of The Tryptamine-Derived
(Indol-3-Acetamide)-Ttq Adduct Of Aromatic Amine
Dehydrogenase
pdb|2OIZ|B Chain B, Crystal Structure Of The Tryptamine-Derived
(Indol-3-Acetamide)-Ttq Adduct Of Aromatic Amine
Dehydrogenase
pdb|2OK6|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase
Ttq-Formamide Adduct Oxidized With Ferricyanide.
pdb|2OK6|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase
Ttq-Formamide Adduct Oxidized With Ferricyanide.
pdb|2HJ4|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh Complex
With P- Nitrobenzylamine
pdb|2HJ4|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh Complex
With P- Nitrobenzylamine
pdb|2HJB|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh In
Complex With P- Methoxybenzylamine
pdb|2HJB|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh In
Complex With P- Methoxybenzylamine
Length = 361
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 73 FLHMKNSRDNVYNCTSSNFDGMI 95
F+H+ SR +VY+ T+ F GM+
Sbjct: 25 FMHLTESRVHVYDYTNGKFLGMV 47
>pdb|2OJY|A Chain A, Crystal Structure Of Indol-3-Acetaldehyde Derived
Ttq-Amide Adduct Of Aromatic Amine Dehydrogenase
pdb|2OJY|B Chain B, Crystal Structure Of Indol-3-Acetaldehyde Derived
Ttq-Amide Adduct Of Aromatic Amine Dehydrogenase
pdb|2HKM|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Phenylethylamine.
pdb|2HKM|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Phenylethylamine.
pdb|2HKR|A Chain A, Structures Of The Carbinolamine And Schiff-Base
Intermediates In The Reductive Half-Reaction Of
Aromatic Amine Dehydrogenase (Aadh) With
P-Methoxyphenylethylamine
pdb|2HKR|B Chain B, Structures Of The Carbinolamine And Schiff-Base
Intermediates In The Reductive Half-Reaction Of
Aromatic Amine Dehydrogenase (Aadh) With
P-Methoxyphenylethylamine
Length = 362
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 73 FLHMKNSRDNVYNCTSSNFDGMI 95
F+H+ SR +VY+ T+ F GM+
Sbjct: 26 FMHLTESRVHVYDYTNGKFLGMV 48
>pdb|2I0S|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct
pdb|2I0S|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct
Length = 360
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 73 FLHMKNSRDNVYNCTSSNFDGMI 95
F+H+ SR +VY+ T+ F GM+
Sbjct: 24 FMHLTESRVHVYDYTNGKFLGMV 46
>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 275
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 69 NCDEFLHMKNSRDNVYNCTSSNFDGMIALMDP 100
F +K S D + N TS++ DG + +DP
Sbjct: 171 KAQAFEQLKQSYDVIINSTSASLDGELPAIDP 202
>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 281
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 66 GCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDP 100
G F +K S D + N TS++ DG + +DP
Sbjct: 174 GEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDP 208
>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|B Chain B, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|C Chain C, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|D Chain D, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3SEF|A Chain A, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|B Chain B, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|C Chain C, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|D Chain D, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
Length = 302
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 66 GCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDP 100
G F +K S D + N TS++ DG + +DP
Sbjct: 195 GEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDP 229
>pdb|2H3X|A Chain A, Crystal Structure Of An Electron Transfer Complex
Between Aromatic Amine Dehydrogenase And Azurin From
Alcaligenes Faecalis (Form 3)
pdb|2H3X|D Chain D, Crystal Structure Of An Electron Transfer Complex
Between Aromatic Amine Dehydrogenase And Azurin From
Alcaligenes Faecalis (Form 3)
pdb|2H47|A Chain A, Crystal Structure Of An Electron Transfer Complex
Between Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|D Chain D, Crystal Structure Of An Electron Transfer Complex
Between Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|F Chain F, Crystal Structure Of An Electron Transfer Complex
Between Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|H Chain H, Crystal Structure Of An Electron Transfer Complex
Between Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2IAA|A Chain A, Crystal Structure Of An Electron Transfer Complex
Between Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
pdb|2IAA|D Chain D, Crystal Structure Of An Electron Transfer Complex
Between Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
Length = 390
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 73 FLHMKNSRDNVYNCTSSNFDGMI 95
F+H+ SR +VY+ T+ F GM+
Sbjct: 54 FMHLTESRVHVYDYTNGKFLGMV 76
>pdb|2Q7Q|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh In
Complex With P- Chlorobenzylamine.
pdb|2Q7Q|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh In
Complex With P- Chlorobenzylamine
Length = 361
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 73 FLHMKNSRDNVYNCTSSNFDGMI 95
F+H+ SR +VY+ T+ F GM+
Sbjct: 25 FMHLTESRVHVYDYTNGKFLGMV 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,991,712
Number of Sequences: 62578
Number of extensions: 154862
Number of successful extensions: 296
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 11
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)