BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8226
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DGQ0|SPT4H_DANRE Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3
SV=1
Length = 117
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 47/56 (83%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNC+ +L MK +R+ VY CTSS+FDG+IA+M P+DSWVAKWQRI
Sbjct: 22 VKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMMSPEDSWVAKWQRI 77
>sp|Q4R941|SPT4H_MACFA Transcription elongation factor SPT4 OS=Macaca fascicularis
GN=SUPT4H1 PE=3 SV=1
Length = 117
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 48/56 (85%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>sp|P63272|SPT4H_HUMAN Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1
PE=1 SV=1
Length = 117
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 48/56 (85%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>sp|Q3SYX6|SPT4H_BOVIN Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3
SV=1
Length = 117
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 48/56 (85%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>sp|P63271|SPT41_MOUSE Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1
PE=2 SV=1
Length = 117
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 48/56 (85%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>sp|Q5RFH5|SPT4H_PONAB Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1
PE=3 SV=1
Length = 117
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 47/56 (83%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P DSWV+KWQR+
Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRV 77
>sp|Q5HZ97|SPT4H_XENLA Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1
PE=3 SV=1
Length = 117
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 47/56 (83%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG++A+M P DSWV+KWQRI
Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIVAMMSPDDSWVSKWQRI 77
>sp|Q9TVQ5|SPT4H_DROME Transcription elongation factor SPT4 OS=Drosophila melanogaster
GN=spt4 PE=1 SV=1
Length = 116
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 49/56 (87%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
+FDQFE DGC+NC+EFL MKN++DNVY+ TS+NFDG+IAL P DSWVAKWQR+ R
Sbjct: 24 SFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLSR 79
>sp|Q9Z199|SPT42_MOUSE Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2
PE=2 SV=1
Length = 117
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 47/54 (87%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+ A+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGINAMMSPEDSWVSKWQRV 77
>sp|Q628A6|SPT4H_CAEBR Transcription elongation factor SPT4 OS=Caenorhabditis briggsae
GN=spt-4 PE=3 SV=1
Length = 120
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
+ D F+ DGC+NCDE LH+K + VY+CTS+N+DGMIA M DSWV KWQ+++R
Sbjct: 23 SVDAFQTDGCENCDEVLHLKGDEEKVYDCTSANYDGMIAAMSNDDSWVCKWQKMQR 78
>sp|Q9TZ93|SPT4H_CAEEL Transcription elongation factor SPT4 OS=Caenorhabditis elegans
GN=spt-4 PE=3 SV=1
Length = 120
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
+ + F+ +GC+NC++ LH+K + VY+CTS+N+DGMIA M +SWV KWQ+++R
Sbjct: 21 VKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQR 78
>sp|Q7S743|SPT4_NEUCR Transcription elongation factor spt-4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=spt-4 PE=3 SV=1
Length = 120
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T+ +F +GC NC++FLH++ S D + +CTS F+G+I + +P+ SWVAKWQR+
Sbjct: 25 TYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVAKWQRL 78
>sp|Q4I5W5|SPT4_GIBZE Transcription elongation factor SPT4 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT4
PE=3 SV=2
Length = 123
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T +F+ +GC NC+EFLH+++S D + +CTS F+G+I L +P SW+AK+QR+
Sbjct: 26 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRL 79
>sp|P0CR68|SPT4_CRYNJ Transcription elongation factor SPT4 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT4 PE=3 SV=1
Length = 113
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 62 FEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
F GC NC++ L M+ S + V CTS +DGMIA+++P +SWVA+WQRI
Sbjct: 25 FLTQGCPNCEDILEMRGSAERVAECTSLLYDGMIAMIEPSESWVARWQRI 74
>sp|P0CR69|SPT4_CRYNB Transcription elongation factor SPT4 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=SPT4 PE=3
SV=1
Length = 113
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 62 FEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
F GC NC++ L M+ S + V CTS +DGMIA+++P +SWVA+WQRI
Sbjct: 25 FLTQGCPNCEDILEMRGSAERVAECTSLLYDGMIAMIEPSESWVARWQRI 74
>sp|Q4WU00|SPT4_ASPFU Transcription elongation factor spt4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=spt4 PE=3 SV=1
Length = 156
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 61 QFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
+F DGC NCD L ++ + D + CTS F+G+I L DP SWVA+WQR+
Sbjct: 29 KFMRDGCPNCDNVLGLRGNNDAIQECTSQVFEGLITLRDPSTSWVARWQRL 79
>sp|Q8LCQ3|SPT41_ARATH Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis
thaliana GN=At5g08565 PE=2 SV=3
Length = 116
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 54 RTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
R T+DQF GC+NC F +++ + + + T+ NF+G+I++MDP+ SW A+W RI
Sbjct: 23 RLVKTYDQFRDSGCENCP-FFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRI 79
>sp|Q94C60|SPT42_ARATH Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis
thaliana GN=At5g63670 PE=2 SV=1
Length = 116
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 54 RTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
R T+DQF GC+NC F M+ + + T+ NF+G+I++MDP SW A+W RI
Sbjct: 23 RLVKTYDQFRDAGCENCP-FFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRI 79
>sp|Q5AK73|SPT4_CANAL Transcription elongation factor SPT4 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPT4 PE=3 SV=1
Length = 112
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 66 GCDNCDEFLHMK-NSRDNVYNCTSSNFDGMIAL-MDPKDSWVAKWQRI 111
GC NC+ LH + N V +CTS +F+G++AL D K SWVA+W RI
Sbjct: 25 GCPNCESLLHYQYNDNKQVQDCTSPSFEGLVALGEDNKGSWVARWLRI 72
>sp|Q752J8|SPT4_ASHGO Transcription elongation factor SPT4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SPT4 PE=3 SV=1
Length = 102
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
T ++F DGC NC + + + CTS +F+G++ + P SWVAKW + +
Sbjct: 13 VQTTNEFTRDGCPNCQGIF--EEASVSAIECTSPSFEGLVGMCKPTKSWVAKWISVEQ 68
>sp|P32914|SPT4_YEAST Transcription elongation factor SPT4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPT4 PE=1 SV=1
Length = 102
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T ++F DGC NC + + + CTS +F+G++ + P SWVAKW +
Sbjct: 13 VQTTNEFNRDGCPNCQGIF--EEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSV 66
>sp|Q6FMX1|SPT4_CANGA Transcription elongation factor SPT4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPT4 PE=3 SV=1
Length = 102
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T ++F GC NC + + + CTS +F+G++ + P SWVAKW +
Sbjct: 13 VQTTNEFGRVGCPNCQGIF--EEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSV 66
>sp|P81205|SPT4_KLULA Transcription elongation factor SPT4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SPT4 PE=3 SV=1
Length = 102
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 61 QFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
+F +GC NC + + + CTS +F+G++ + P SWVA+W I
Sbjct: 18 EFNRNGCPNCQSIF--EEAGVSAVECTSPSFEGLVGMCKPSRSWVARWMSI 66
>sp|Q6BHA5|SPT4_DEBHA Transcription elongation factor SPT4 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SPT4 PE=3 SV=2
Length = 111
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 59 FDQFEFDGCDNCDEFLHMKNSRDN-VYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
F +F GC NC+ LH +++ DN V +CTS +F+G++AL D S + RI
Sbjct: 18 FRKFVDFGCPNCESVLHFQDNEDNQVQDCTSPSFEGLVALGDETKSPGGERLRI 71
>sp|Q9P7K8|SPT4_SCHPO Transcription elongation factor spt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spt4 PE=1 SV=1
Length = 105
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 81 DNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
D+V TS F+G++A+M P +SWVA+WQRI
Sbjct: 35 DDVETFTSPVFEGIMAMMSPTESWVARWQRI 65
>sp|P16724|TRM1_HCMVA Tripartite terminase subunit UL28 homolog OS=Human cytomegalovirus
(strain AD169) GN=UL56 PE=3 SV=1
Length = 850
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 15 PPPKPSTL-AGLKVVGVHNEDHRPWTIDPIPSASAETINPRTTST 58
P KPSTL A V GV E RPW P PS+S ++ R +T
Sbjct: 777 PVAKPSTLTAAAAVSGVFREPDRPWLPSPYPSSSTAGVSRRVRAT 821
>sp|F5HC79|TRM1_HCMVM Tripartite terminase subunit UL28 homolog OS=Human cytomegalovirus
(strain Merlin) GN=UL56 PE=3 SV=1
Length = 850
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 15 PPPKPSTL-AGLKVVGVHNEDHRPWTIDPIPSASAETINPRTTST 58
P KPSTL A V G E RPW P PS+S ++ R +T
Sbjct: 777 PVAKPSTLTAAAAVSGAFREPDRPWLPSPYPSSSTAGVSRRVRAT 821
>sp|A1BI17|ACCD_CHLPD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Chlorobium phaeobacteroides (strain DSM 266) GN=accD
PE=3 SV=1
Length = 279
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 67 CDNCDEFLHMKNSRDNVYNCTSSNF 91
CD C LH K DN Y C+ +
Sbjct: 27 CDECGAMLHKKQLEDNFYTCSECGY 51
>sp|A4SD85|ACCD_PROVI Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Prosthecochloris vibrioformis (strain DSM 265)
GN=accD PE=3 SV=1
Length = 281
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 67 CDNCDEFLHMKNSRDNVYNC 86
CD+C LH K DN++ C
Sbjct: 27 CDSCGAMLHKKQLEDNLFTC 46
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,219,934
Number of Sequences: 539616
Number of extensions: 1942238
Number of successful extensions: 4306
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4272
Number of HSP's gapped (non-prelim): 35
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)