Query psy8226
Match_columns 115
No_of_seqs 107 out of 208
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 21:55:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7h_A Transcription elongatio 100.0 8.6E-35 2.9E-39 212.5 1.8 75 40-114 8-83 (120)
2 2exu_A Transcription initiatio 100.0 8.6E-31 2.9E-35 203.5 1.9 66 47-114 4-69 (200)
3 3lpe_B DNA-directed RNA polyme 99.9 2.7E-24 9.2E-29 140.5 2.7 48 48-113 2-49 (59)
4 1ryq_A DNA-directed RNA polyme 99.9 9.8E-23 3.4E-27 137.0 2.8 52 45-113 9-60 (69)
5 3p8b_A DNA-directed RNA polyme 99.8 1E-21 3.6E-26 135.6 3.2 50 47-113 23-72 (81)
6 2lcq_A Putative toxin VAPC6; P 82.3 0.62 2.1E-05 33.2 2.0 44 22-72 113-156 (165)
7 3na7_A HP0958; flagellar bioge 78.5 0.39 1.3E-05 36.8 -0.2 55 3-75 172-233 (256)
8 3h0g_L DNA-directed RNA polyme 74.4 1.6 5.6E-05 28.2 2.0 43 32-74 6-48 (63)
9 4ayb_P DNA-directed RNA polyme 72.0 1.7 6E-05 27.1 1.6 24 48-71 4-30 (48)
10 3a43_A HYPD, hydrogenase nicke 68.9 1.7 5.8E-05 31.0 1.2 26 48-73 71-116 (139)
11 2apo_B Ribosome biogenesis pro 68.5 1.9 6.5E-05 27.7 1.3 26 43-73 2-27 (60)
12 2kdx_A HYPA, hydrogenase/ureas 59.6 3.4 0.00012 28.2 1.3 26 48-73 74-99 (119)
13 2dkt_A Ring finger and CHY zin 55.5 3.2 0.00011 30.6 0.6 27 42-72 53-79 (143)
14 1e8j_A Rubredoxin; iron-sulfur 55.1 5.1 0.00018 24.5 1.4 26 47-72 3-44 (52)
15 1xv3_A Penaeidin-4D, PEN-4D; a 50.6 6.3 0.00021 24.5 1.3 30 12-61 5-34 (47)
16 6rxn_A Rubredoxin; electron tr 50.3 5.5 0.00019 24.0 1.0 26 47-72 4-38 (46)
17 2aus_D NOP10, ribosome biogene 46.7 6.6 0.00023 25.2 1.0 23 45-72 3-25 (60)
18 1lko_A Rubrerythrin all-iron(I 43.6 6 0.0002 29.2 0.5 24 48-72 156-179 (191)
19 2v3b_B Rubredoxin 2, rubredoxi 42.3 9.4 0.00032 23.6 1.2 26 47-72 3-44 (55)
20 1dx8_A Rubredoxin; electron tr 40.6 12 0.00043 24.1 1.6 27 46-72 6-48 (70)
21 3pwf_A Rubrerythrin; non heme 38.6 8.9 0.00031 28.1 0.7 25 46-72 137-161 (170)
22 1gh9_A 8.3 kDa protein (gene M 38.6 4.6 0.00016 26.4 -0.8 27 49-77 6-33 (71)
23 1yk4_A Rubredoxin, RD; electro 37.5 11 0.00038 23.0 0.9 25 48-72 3-43 (52)
24 3qt1_I DNA-directed RNA polyme 37.4 13 0.00043 26.6 1.3 23 49-71 26-53 (133)
25 2kum_A C-C motif chemokine 27; 36.7 13 0.00043 25.1 1.2 17 93-110 50-66 (88)
26 2gmg_A Hypothetical protein PF 36.0 15 0.00052 25.8 1.6 23 49-72 69-92 (105)
27 2kn9_A Rubredoxin; metalloprot 35.8 16 0.00054 24.5 1.5 27 46-72 26-68 (81)
28 2con_A RUH-035 protein, NIN on 35.7 14 0.00049 24.6 1.3 27 42-72 10-38 (79)
29 3h0g_I DNA-directed RNA polyme 34.7 13 0.00044 25.4 1.0 11 50-60 7-17 (113)
30 1ha6_A Macrophage inflammatory 31.2 18 0.00063 22.5 1.2 15 95-110 47-61 (70)
31 1m8a_A Small inducible cytokin 30.9 19 0.00064 22.4 1.2 18 92-110 43-61 (70)
32 1twf_L ABC10-alpha, DNA-direct 30.5 18 0.00061 23.4 1.1 25 48-72 29-53 (70)
33 1eot_A Eotaxin; cytokine, chem 30.1 20 0.00067 22.6 1.2 18 92-110 45-63 (74)
34 1esr_A MCP-2, monocyte chemota 29.5 20 0.00069 22.7 1.2 19 92-110 47-65 (76)
35 2q8r_E CCL14; common CC chemok 29.3 21 0.00071 22.0 1.2 19 92-110 43-61 (66)
36 2fiy_A Protein FDHE homolog; F 27.5 17 0.00058 29.2 0.7 22 48-72 209-230 (309)
37 1s24_A Rubredoxin 2; electron 27.4 22 0.00074 24.1 1.1 26 47-72 35-76 (87)
38 4e0i_A Mitochondrial FAD-linke 27.3 16 0.00054 27.5 0.5 27 21-61 15-41 (189)
39 1b3a_A Protein (rantes); chemi 26.6 25 0.00085 21.7 1.2 18 92-110 44-62 (67)
40 1yuz_A Nigerythrin; rubrythrin 26.5 19 0.00066 26.8 0.8 24 47-72 171-194 (202)
41 3b08_B Ranbp-type and C3HC4-ty 25.7 21 0.00072 23.0 0.8 49 45-110 6-54 (64)
42 4g29_A Secreted effector prote 25.2 6.1 0.00021 30.5 -2.2 35 77-111 87-127 (186)
43 2q8t_A CCL14; common CC chemok 24.1 29 0.00099 21.9 1.2 18 92-110 51-69 (74)
44 1nho_A Probable thioredoxin; b 24.0 27 0.00093 20.0 1.0 16 59-74 5-20 (85)
45 4rxn_A Rubredoxin; electron tr 24.0 27 0.00092 21.6 1.0 14 47-60 3-16 (54)
46 1eig_A Eotaxin-2; chemokine, c 23.5 30 0.001 21.7 1.2 18 92-110 43-61 (73)
47 1cm9_A VMIP-II, protein (viral 23.5 30 0.001 21.8 1.2 19 92-110 49-67 (74)
48 1f2l_A Fractalkine; chemoattra 23.5 30 0.001 22.0 1.2 19 92-110 45-63 (76)
49 2ra4_A Small-inducible cytokin 23.4 30 0.001 21.9 1.2 18 92-110 47-65 (76)
50 1nr4_A CCL17, thymus and activ 23.2 31 0.0011 21.5 1.2 18 92-110 45-63 (71)
51 1dok_A MCP-1, MCAF, monocyte c 22.8 32 0.0011 21.8 1.2 18 92-110 48-66 (77)
52 3nw0_A Non-structural maintena 22.1 26 0.00087 26.8 0.8 25 47-75 180-204 (238)
53 1g2s_A Eotaxin-3; beta-BETA-be 21.3 35 0.0012 21.4 1.2 19 92-110 45-63 (71)
54 1ltl_A DNA replication initiat 20.6 18 0.0006 27.8 -0.4 24 49-72 136-164 (279)
55 3on7_A Oxidoreductase, iron/as 20.5 1.1E+02 0.0036 23.4 4.0 21 22-45 188-208 (280)
56 1zxt_A ORF K6, VMIP-I, functio 20.5 38 0.0013 21.7 1.2 19 92-110 46-64 (76)
57 2k8s_A Thioredoxin; dimer, str 20.4 14 0.00048 22.0 -0.9 17 59-75 4-20 (80)
58 2bzw_B BCL2-antagonist of cell 20.2 33 0.0011 18.9 0.7 11 100-110 2-12 (27)
59 3die_A Thioredoxin, TRX; elect 20.1 17 0.00057 21.7 -0.6 14 61-74 25-38 (106)
No 1
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=100.00 E-value=8.6e-35 Score=212.46 Aligned_cols=75 Identities=51% Similarity=0.971 Sum_probs=70.4
Q ss_pred EcCCCCcc-ccccCCcccccccccccCCCCCchhhhcccCCCCccccccccccceEEEEeCCCchHHHhhhccccC
Q psy8226 40 IDPIPSAS-AETINPRTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRRT 114 (115)
Q Consensus 40 i~p~~~~~-~ACl~C~lVkT~dQF~~~GCPNC~~~L~m~gd~d~v~dCTT~nF~G~IaImdP~kSWVAKwqrI~k~ 114 (115)
.+|.+.+. +||++|++|+|.+||+++|||||++||+|+||+|+|++|||++|+|+|+||||++|||||||||++|
T Consensus 8 ~iP~~~r~lrAC~~C~~V~t~~qF~~~gCpnC~~~l~m~~~~d~v~~ctT~~f~G~I~i~dP~~SwVAk~~~i~~~ 83 (120)
T 3h7h_A 8 TVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNF 83 (120)
T ss_dssp GSCSSSTTEEEETTTCBEEEHHHHHHHCCTTTHHHHCCTTCHHHHHHHEESCEEEEEEESCGGGCHHHHHTTCTTS
T ss_pred cCCCccccCeeeccCCceechhhccCCCCCCCcchhhccCCcccccccccCCcceEEEEeCCcHHHHHHHhccCCC
Confidence 35677766 4799999999999999999999999999999999999999999999999999999999999999986
No 2
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.6e-31 Score=203.55 Aligned_cols=66 Identities=29% Similarity=0.697 Sum_probs=63.9
Q ss_pred cccccCCcccccccccccCCCCCchhhhcccCCCCccccccccccceEEEEeCCCchHHHhhhccccC
Q psy8226 47 SAETINPRTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRRT 114 (115)
Q Consensus 47 ~~ACl~C~lVkT~dQF~~~GCPNC~~~L~m~gd~d~v~dCTT~nF~G~IaImdP~kSWVAKwqrI~k~ 114 (115)
.+||+.|++|+|.+||..+|||||++|| +||+++|+||||++|+|+|+||||++|||||||||++|
T Consensus 4 lrAC~~C~~i~t~~qf~~~gCpnC~~~l--~g~~~~v~~cts~~f~G~i~i~dp~~Swvakw~rl~~y 69 (200)
T 2exu_A 4 ERACMLCGIVQTTNEFNRDGCPNCQGIF--EEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDHS 69 (200)
T ss_dssp EEEETTTCBEEEHHHHHHHCCTTTHHHH--HHHTCCSGGGEESCEEEEEEESCTTTCHHHHHTTCTTS
T ss_pred ceecccCCceechhHhccCCCCCCcccc--CCCcceeeecccCCeeeEEEEeCCcchHHHHHHhcccc
Confidence 4689999999999999999999999999 89999999999999999999999999999999999987
No 3
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=99.89 E-value=2.7e-24 Score=140.46 Aligned_cols=48 Identities=23% Similarity=0.352 Sum_probs=44.3
Q ss_pred ccccCCcccccccccccCCCCCchhhhcccCCCCccccccccccceEEEEeCCCchHHHhhhcccc
Q psy8226 48 AETINPRTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113 (115)
Q Consensus 48 ~ACl~C~lVkT~dQF~~~GCPNC~~~L~m~gd~d~v~dCTT~nF~G~IaImdP~kSWVAKwqrI~k 113 (115)
+||++||+|++.+ |||||++ |||++|+|+|+||||++|||||||||+.
T Consensus 2 rAC~~C~~v~~~~-----~CpnC~~-------------~tt~~~~G~v~i~dP~~SwvAk~~~i~~ 49 (59)
T 3lpe_B 2 RACLKCKYLTNDE-----ICPICHS-------------PTSENWIGLLIVINPEKSEIAKKAGIDI 49 (59)
T ss_dssp EEETTTCBEESSS-----BCTTTCC-------------BEESCEECEEEESCTTTCHHHHHTTCCS
T ss_pred cccccCCcccCCC-----CCCCCCC-------------CccCCEeeEEEEeCCchhHHHHHhCCCC
Confidence 6899999999887 6999984 6899999999999999999999999973
No 4
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=99.86 E-value=9.8e-23 Score=137.03 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=44.3
Q ss_pred CccccccCCcccccccccccCCCCCchhhhcccCCCCccccccccccceEEEEeCCCchHHHhhhcccc
Q psy8226 45 SASAETINPRTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113 (115)
Q Consensus 45 ~~~~ACl~C~lVkT~dQF~~~GCPNC~~~L~m~gd~d~v~dCTT~nF~G~IaImdP~kSWVAKwqrI~k 113 (115)
+..+||++|++|. ..+|||||++ .|||++|+|+|+||||++|||||||+++.
T Consensus 9 ~~~~AC~~C~~~~-----~~~~CPnC~s------------~~tS~~w~G~ViI~dPe~S~IAK~l~i~~ 60 (69)
T 1ryq_A 9 SSEKACRHCHYIT-----SEDRCPVCGS------------RDLSEEWFDLVIIVDVENSEIAKKIGAKV 60 (69)
T ss_dssp --CEEETTTCBEE-----SSSSCTTTCC------------CCEESCEEEEEEESCGGGCHHHHHHTCCS
T ss_pred chhhhHHhCCccc-----cCCcCCCccC------------CccCCccceEEEEeCCchhHHHHHhCCCC
Confidence 4558999999988 3458999984 26999999999999999999999999863
No 5
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=99.83 E-value=1e-21 Score=135.57 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=44.7
Q ss_pred cccccCCcccccccccccCCCCCchhhhcccCCCCccccccccccceEEEEeCCCchHHHhhhcccc
Q psy8226 47 SAETINPRTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113 (115)
Q Consensus 47 ~~ACl~C~lVkT~dQF~~~GCPNC~~~L~m~gd~d~v~dCTT~nF~G~IaImdP~kSWVAKwqrI~k 113 (115)
.+||++|++|++.+ +||||++ ++||++|+|+|+|+||++|||||||+|++
T Consensus 23 ~rAC~~C~~v~~~d-----~CPnCgs------------~~~T~~w~G~ViI~dPe~S~IAk~l~i~~ 72 (81)
T 3p8b_A 23 EKACRHCHYITSED-----RCPVCGS------------RDLSEEWFDLVIIVDVENSEIAKKIGAKV 72 (81)
T ss_dssp CEEETTTCBEESSS-----SCTTTCC------------CCEESCEEEEEEESCTTTCHHHHHHTCCS
T ss_pred HHHHhhCCCccCCC-----CCCCCCC------------CccCCccceEEEEeCChHhHHHHHhCCCC
Confidence 47999999999876 5999984 24899999999999999999999999973
No 6
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=82.25 E-value=0.62 Score=33.18 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=27.6
Q ss_pred cccceEEEeecCCCCceeEcCCCCccccccCCcccccccccccCCCCCchh
Q psy8226 22 LAGLKVVGVHNEDHRPWTIDPIPSASAETINPRTTSTFDQFEFDGCDNCDE 72 (115)
Q Consensus 22 ~~~~~~~~~~~e~~~p~~i~p~~~~~~ACl~C~lVkT~dQF~~~GCPNC~~ 72 (115)
..|++|+|+. +-. .-.-+..+.|..|+-+-+... ...-||.|++
T Consensus 113 ~~Gv~v~~~~-~~i-----~~~~~~~y~C~~Cg~~~~~~~-~~~~Cp~CG~ 156 (165)
T 2lcq_A 113 LLGLRFRTLK-RGI-----KKVIKWRYVCIGCGRKFSTLP-PGGVCPDCGS 156 (165)
T ss_dssp HTTCCEECCS-CCC-----SSCCCCCEEESSSCCEESSCC-GGGBCTTTCC
T ss_pred HCCCeEEchh-hhc-----cccccEEEECCCCCCcccCCC-CCCcCCCCCC
Confidence 4588888876 322 223344578999998765321 1123999996
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.53 E-value=0.39 Score=36.82 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=36.9
Q ss_pred ccCCcceEEEecCCCCCCccccceEEEeecCCCCceeEcCCCCccccccCCccccccccccc----C---CCCCchhhhc
Q psy8226 3 TIDPGLLTLYYRPPPKPSTLAGLKVVGVHNEDHRPWTIDPIPSASAETINPRTTSTFDQFEF----D---GCDNCDEFLH 75 (115)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~i~p~~~~~~ACl~C~lVkT~dQF~~----~---GCPNC~~~L~ 75 (115)
.|||.||..|-|--- ...|+-||.|.+ .+|..|++..+...|.. + -||||+.+|=
T Consensus 172 ~i~~~lL~~Yerir~---~~~g~avv~v~~---------------~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 172 KTEPKIYSFYERIRR---WAKNTSIVTIKK---------------QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp TSCHHHHHHHHHHHH---HHGGGSEEECBT---------------TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred cCCHHHHHHHHHHHH---hCCCceEEEeeC---------------CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 467777777754311 124666666643 48999999998876632 1 5999998774
No 8
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=74.45 E-value=1.6 Score=28.19 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=22.6
Q ss_pred cCCCCceeEcCCCCccccccCCcccccccccccCCCCCchhhh
Q psy8226 32 NEDHRPWTIDPIPSASAETINPRTTSTFDQFEFDGCDNCDEFL 74 (115)
Q Consensus 32 ~e~~~p~~i~p~~~~~~ACl~C~lVkT~dQF~~~GCPNC~~~L 74 (115)
+++|-++.....+.-...|.+|+...+.+.-..--||+|+.-.
T Consensus 6 ~~~g~~~~~~~~~~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 6 STGGTAFNPPRPATMIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp -------------CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred cCCccccCCCCCCCeEEECCCCCCeeecCCCCceECCCCCcEE
Confidence 4555555544444555789999998887754345799998643
No 9
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=72.00 E-value=1.7 Score=27.09 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=19.6
Q ss_pred ccccCCccccccccccc---CCCCCch
Q psy8226 48 AETINPRTTSTFDQFEF---DGCDNCD 71 (115)
Q Consensus 48 ~ACl~C~lVkT~dQF~~---~GCPNC~ 71 (115)
..|++|+...+.+|-+. --||+|+
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCG 30 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCG 30 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccC
Confidence 46999999999988644 3699998
No 10
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=68.88 E-value=1.7 Score=30.99 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=19.5
Q ss_pred ccccCCcccccccc-----------cc---------cCCCCCchhh
Q psy8226 48 AETINPRTTSTFDQ-----------FE---------FDGCDNCDEF 73 (115)
Q Consensus 48 ~ACl~C~lVkT~dQ-----------F~---------~~GCPNC~~~ 73 (115)
..|++|+..-+.++ .. ..-||.|++.
T Consensus 71 ~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 71 FKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp EEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred EECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 46999999987766 31 3469999963
No 11
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=68.50 E-value=1.9 Score=27.67 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=18.4
Q ss_pred CCCccccccCCcccccccccccCCCCCchhh
Q psy8226 43 IPSASAETINPRTTSTFDQFEFDGCDNCDEF 73 (115)
Q Consensus 43 ~~~~~~ACl~C~lVkT~dQF~~~GCPNC~~~ 73 (115)
+.++-..|.+|+.-.-.++ ||+|++.
T Consensus 2 Mks~mr~C~~CgvYTLk~~-----CP~CG~~ 27 (60)
T 2apo_B 2 VEMRMKKCPKCGLYTLKEI-----CPKCGEK 27 (60)
T ss_dssp -CCCCEECTTTCCEESSSB-----CSSSCSB
T ss_pred chhhceeCCCCCCEecccc-----CcCCCCc
Confidence 4555667999987755444 9999964
No 12
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=59.55 E-value=3.4 Score=28.23 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=19.8
Q ss_pred ccccCCcccccccccccCCCCCchhh
Q psy8226 48 AETINPRTTSTFDQFEFDGCDNCDEF 73 (115)
Q Consensus 48 ~ACl~C~lVkT~dQF~~~GCPNC~~~ 73 (115)
..|+.|+..-+.+.+...-||.|++.
T Consensus 74 ~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred EEcCCCCCEEeCCCCCCCcCccccCC
Confidence 46999999988776533269999863
No 13
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=55.47 E-value=3.2 Score=30.60 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=20.7
Q ss_pred CCCCccccccCCcccccccccccCCCCCchh
Q psy8226 42 PIPSASAETINPRTTSTFDQFEFDGCDNCDE 72 (115)
Q Consensus 42 p~~~~~~ACl~C~lVkT~dQF~~~GCPNC~~ 72 (115)
+...+.-.|..|+..++..+ -|+||+.
T Consensus 53 r~~~~~vlCg~C~~~q~~~~----~C~~Cg~ 79 (143)
T 2dkt_A 53 RFKVKEVQCINCEKLQHAQQ----TCEDCST 79 (143)
T ss_dssp SSSCCCEEESSSCCEECSCS----BCSSSCC
T ss_pred hhccceeeecccCccccccC----cCCCCCc
Confidence 34444556999999999886 4999985
No 14
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=55.08 E-value=5.1 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=18.2
Q ss_pred cccccCCcccccccc------------ccc--C--CCCCchh
Q psy8226 47 SAETINPRTTSTFDQ------------FEF--D--GCDNCDE 72 (115)
Q Consensus 47 ~~ACl~C~lVkT~dQ------------F~~--~--GCPNC~~ 72 (115)
...|..|++|-..+. |.+ + -||.|+.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCC
Confidence 356999999987543 332 2 5999984
No 15
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=50.57 E-value=6.3 Score=24.45 Aligned_cols=30 Identities=37% Similarity=0.399 Sum_probs=22.0
Q ss_pred EecCCCCCCccccceEEEeecCCCCceeEcCCCCccccccCCcccccccc
Q psy8226 12 YYRPPPKPSTLAGLKVVGVHNEDHRPWTIDPIPSASAETINPRTTSTFDQ 61 (115)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~e~~~p~~i~p~~~~~~ACl~C~lVkT~dQ 61 (115)
|-||-|+|. ||.++-|+. |-.|+.|.+.+.
T Consensus 5 yT~P~~RPp---------------RPv~~rp~g-----C~sC~~is~s~A 34 (47)
T 1xv3_A 5 YTRPLRKPS---------------RPIFIRPIG-----CDVCYGIPSSTA 34 (47)
T ss_dssp CCCCCCCCC---------------CCCCCCCSS-----TTCTTTSCHHHH
T ss_pred cCCcCCCCC---------------CCcccCCcC-----CccccccCHHHH
Confidence 557777776 777777766 999999866553
No 16
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=50.33 E-value=5.5 Score=24.05 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=17.6
Q ss_pred cccccCCccccccc-----cccc--C--CCCCchh
Q psy8226 47 SAETINPRTTSTFD-----QFEF--D--GCDNCDE 72 (115)
Q Consensus 47 ~~ACl~C~lVkT~d-----QF~~--~--GCPNC~~ 72 (115)
...|..|++|-..+ .|.+ + -||.|+.
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred EEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 34699999998643 1332 1 5999984
No 17
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=46.67 E-value=6.6 Score=25.16 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=15.7
Q ss_pred CccccccCCcccccccccccCCCCCchh
Q psy8226 45 SASAETINPRTTSTFDQFEFDGCDNCDE 72 (115)
Q Consensus 45 ~~~~ACl~C~lVkT~dQF~~~GCPNC~~ 72 (115)
++-..|..|+.-.-.++ ||+|++
T Consensus 3 s~mr~C~~Cg~YTLk~~-----CP~CG~ 25 (60)
T 2aus_D 3 FRIRKCPKCGRYTLKET-----CPVCGE 25 (60)
T ss_dssp -CCEECTTTCCEESSSB-----CTTTCS
T ss_pred ccceECCCCCCEEcccc-----CcCCCC
Confidence 44567999986544333 999996
No 18
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=43.59 E-value=6 Score=29.16 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=17.8
Q ss_pred ccccCCcccccccccccCCCCCchh
Q psy8226 48 AETINPRTTSTFDQFEFDGCDNCDE 72 (115)
Q Consensus 48 ~ACl~C~lVkT~dQF~~~GCPNC~~ 72 (115)
..|+.|++|-+.+..- +-||.|+.
T Consensus 156 ~~C~~CG~~~~g~~~p-~~CP~C~~ 179 (191)
T 1lko_A 156 WRCRNCGYVHEGTGAP-ELCPACAH 179 (191)
T ss_dssp EEETTTCCEEEEEECC-SBCTTTCC
T ss_pred EEECCCCCEeeCCCCC-CCCCCCcC
Confidence 4699999997754332 36999984
No 19
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=42.29 E-value=9.4 Score=23.56 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=18.4
Q ss_pred cccccCCcccccccc------------ccc--C--CCCCchh
Q psy8226 47 SAETINPRTTSTFDQ------------FEF--D--GCDNCDE 72 (115)
Q Consensus 47 ~~ACl~C~lVkT~dQ------------F~~--~--GCPNC~~ 72 (115)
...|+.|++|-..+. |.+ + -||.|+.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 356999999987643 333 2 6999984
No 20
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.60 E-value=12 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=19.1
Q ss_pred ccccccCCcccccccc------------ccc--C--CCCCchh
Q psy8226 46 ASAETINPRTTSTFDQ------------FEF--D--GCDNCDE 72 (115)
Q Consensus 46 ~~~ACl~C~lVkT~dQ------------F~~--~--GCPNC~~ 72 (115)
+...|+.|++|-..+. |.+ + -||.|+.
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCC
Confidence 3567999999987543 332 2 5999984
No 21
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=38.59 E-value=8.9 Score=28.05 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=18.2
Q ss_pred ccccccCCcccccccccccCCCCCchh
Q psy8226 46 ASAETINPRTTSTFDQFEFDGCDNCDE 72 (115)
Q Consensus 46 ~~~ACl~C~lVkT~dQF~~~GCPNC~~ 72 (115)
....|..|++|...+- -+-||.|+.
T Consensus 137 ~~~~C~~CG~i~~~~~--p~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYTAVDEA--PEYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCEEESCC--CSBCTTTCC
T ss_pred CeeEeCCCCCeeCCCC--CCCCCCCCC
Confidence 3456999999977432 246999984
No 22
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=38.55 E-value=4.6 Score=26.41 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=19.1
Q ss_pred cccCCccccccccccc-CCCCCchhhhccc
Q psy8226 49 ETINPRTTSTFDQFEF-DGCDNCDEFLHMK 77 (115)
Q Consensus 49 ACl~C~lVkT~dQF~~-~GCPNC~~~L~m~ 77 (115)
+|. |+...-.+...+ ..|| |+..++.+
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET-TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred ECC-CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 487 887766665544 4798 99877665
No 23
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=37.48 E-value=11 Score=23.00 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=17.2
Q ss_pred ccccCCcccccccc------------ccc--C--CCCCchh
Q psy8226 48 AETINPRTTSTFDQ------------FEF--D--GCDNCDE 72 (115)
Q Consensus 48 ~ACl~C~lVkT~dQ------------F~~--~--GCPNC~~ 72 (115)
..|+.|++|-..+. |.+ + -||.|+.
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCC
Confidence 46999999976641 332 2 5999984
No 24
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=37.43 E-value=13 Score=26.62 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=14.1
Q ss_pred cccCCcccccccccc-----cCCCCCch
Q psy8226 49 ETINPRTTSTFDQFE-----FDGCDNCD 71 (115)
Q Consensus 49 ACl~C~lVkT~dQF~-----~~GCPNC~ 71 (115)
-|..|+=++-.+.=. .--|++|+
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCg 53 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCS 53 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSC
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCC
Confidence 488888777544210 12488887
No 25
>2kum_A C-C motif chemokine 27; CCL27, ctack, cytokine, disulfide bond, polymorph signaling protein; NMR {Homo sapiens}
Probab=36.66 E-value=13 Score=25.13 Aligned_cols=17 Identities=18% Similarity=0.591 Sum_probs=13.7
Q ss_pred eEEEEeCCCchHHHhhhc
Q psy8226 93 GMIALMDPKDSWVAKWQR 110 (115)
Q Consensus 93 G~IaImdP~kSWVAKwqr 110 (115)
+.|.. ||++.||.+|++
T Consensus 50 r~vCA-dP~~~WVq~~mk 66 (88)
T 2kum_A 50 RSICI-HPQNPSLSQWFE 66 (88)
T ss_dssp EEEEE-CSSCHHHHHHHH
T ss_pred CeEeC-CCchHHHHHHHH
Confidence 44555 999999999985
No 26
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.01 E-value=15 Score=25.81 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=16.6
Q ss_pred cccCCccccccccccc-CCCCCchh
Q psy8226 49 ETINPRTTSTFDQFEF-DGCDNCDE 72 (115)
Q Consensus 49 ACl~C~lVkT~dQF~~-~GCPNC~~ 72 (115)
.|+.|+++- .+.+.. .-||.|.+
T Consensus 69 ~C~~CG~~F-~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 69 QCRKCGFVF-KAEINIPSRCPKCKS 92 (105)
T ss_dssp BBTTTCCBC-CCCSSCCSSCSSSCC
T ss_pred ChhhCcCee-cccCCCCCCCcCCCC
Confidence 699999985 233333 57999985
No 27
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=35.78 E-value=16 Score=24.52 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=19.2
Q ss_pred ccccccCCcccccccc------------ccc--C--CCCCchh
Q psy8226 46 ASAETINPRTTSTFDQ------------FEF--D--GCDNCDE 72 (115)
Q Consensus 46 ~~~ACl~C~lVkT~dQ------------F~~--~--GCPNC~~ 72 (115)
+...|..|++|-..+. |.+ + -||.|+.
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 4567999999987643 332 2 6999984
No 28
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=35.73 E-value=14 Score=24.57 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=19.6
Q ss_pred CCCCccccccCCcccccc--cccccCCCCCchh
Q psy8226 42 PIPSASAETINPRTTSTF--DQFEFDGCDNCDE 72 (115)
Q Consensus 42 p~~~~~~ACl~C~lVkT~--dQF~~~GCPNC~~ 72 (115)
-+-+.-++|..|--+... .+| ||+|+.
T Consensus 10 ~~k~~iLrC~aCf~~t~~~~k~F----Cp~CGn 38 (79)
T 2con_A 10 EARSYILRCHGCFKTTSDMNRVF----CGHCGN 38 (79)
T ss_dssp CCCCEEEECSSSCCEESCSSCCS----CSSSCC
T ss_pred eeeeeeeEecccceECCCccccc----ccccCc
Confidence 334445789999988644 467 999984
No 29
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.66 E-value=13 Score=25.44 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=6.3
Q ss_pred ccCCccccccc
Q psy8226 50 TINPRTTSTFD 60 (115)
Q Consensus 50 Cl~C~lVkT~d 60 (115)
|-.|+-++...
T Consensus 7 Cp~Cgn~L~~~ 17 (113)
T 3h0g_I 7 CIECNNMLYPR 17 (113)
T ss_dssp CSSSCCCCEEC
T ss_pred CcCCCCEeeEc
Confidence 66666655443
No 30
>1ha6_A Macrophage inflammatory protein 3 alpha; immune system, chemiokine, mouse, CCL20/MIP-3A, defensins; NMR {Mus musculus} SCOP: d.9.1.1
Probab=31.21 E-value=18 Score=22.47 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=12.2
Q ss_pred EEEeCCCchHHHhhhc
Q psy8226 95 IALMDPKDSWVAKWQR 110 (115)
Q Consensus 95 IaImdP~kSWVAKwqr 110 (115)
|.+ ||++.||-++++
T Consensus 47 vC~-dP~~~WVq~~i~ 61 (70)
T 1ha6_A 47 VCA-DPKQNWVKRAVN 61 (70)
T ss_dssp EEE-CTTSHHHHHHHH
T ss_pred EeC-CCChHHHHHHHH
Confidence 444 999999999874
No 31
>1m8a_A Small inducible cytokine A20; CC-chemokine, IL-8 type dimer; 1.70A {Synthetic} SCOP: d.9.1.1 PDB: 2jyo_A 2hci_A
Probab=30.88 E-value=19 Score=22.43 Aligned_cols=18 Identities=28% Similarity=0.686 Sum_probs=13.6
Q ss_pred ceE-EEEeCCCchHHHhhhc
Q psy8226 92 DGM-IALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~-IaImdP~kSWVAKwqr 110 (115)
.|- |. .||++.||-++++
T Consensus 43 ~g~~vC-~dP~~~WVq~~i~ 61 (70)
T 1m8a_A 43 KKLSVC-ANPKQTWVKYIVR 61 (70)
T ss_dssp TCCEEE-ECTTSHHHHHHHH
T ss_pred CCCEEe-CCCChHHHHHHHH
Confidence 443 44 4999999999874
No 32
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.48 E-value=18 Score=23.37 Aligned_cols=25 Identities=8% Similarity=0.227 Sum_probs=17.2
Q ss_pred ccccCCcccccccccccCCCCCchh
Q psy8226 48 AETINPRTTSTFDQFEFDGCDNCDE 72 (115)
Q Consensus 48 ~ACl~C~lVkT~dQF~~~GCPNC~~ 72 (115)
..|..|+...+...=..--||+|+.
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCc
Confidence 4699999985554211235999997
No 33
>1eot_A Eotaxin; cytokine, chemokine, protein synthesis, solution structure, CCR3, eosinophil; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 2eot_A
Probab=30.12 E-value=20 Score=22.63 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=13.6
Q ss_pred ceE-EEEeCCCchHHHhhhc
Q psy8226 92 DGM-IALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~-IaImdP~kSWVAKwqr 110 (115)
.|- |. .||++.||-++++
T Consensus 45 ~g~~vC-~dP~~~WVq~~i~ 63 (74)
T 1eot_A 45 LAKDIC-ADPKKKWVQDSMK 63 (74)
T ss_dssp TSCEEE-ECTTCHHHHHHHH
T ss_pred CCCEEe-CCCChHHHHHHHH
Confidence 444 44 4999999999874
No 34
>1esr_A MCP-2, monocyte chemotactic protein 2; cytokine, chemokine, monocyte chemoattractant protein, HIV- 1, pyroglutamic acid, X-RAY crystallography; 2.00A {Homo sapiens} SCOP: d.9.1.1
Probab=29.53 E-value=20 Score=22.67 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=13.6
Q ss_pred ceEEEEeCCCchHHHhhhc
Q psy8226 92 DGMIALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~IaImdP~kSWVAKwqr 110 (115)
.|--.=.||++.||-++++
T Consensus 47 ~g~~vC~dP~~~WVq~~i~ 65 (76)
T 1esr_A 47 RGKEVCADPKERWVRDSMK 65 (76)
T ss_dssp TCCEEEECTTSHHHHHHHH
T ss_pred CCCEEeCCCChHHHHHHHH
Confidence 4442335999999999874
No 35
>2q8r_E CCL14; common CC chemokine fold, cytokine; 1.82A {Homo sapiens}
Probab=29.31 E-value=21 Score=21.96 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=13.4
Q ss_pred ceEEEEeCCCchHHHhhhc
Q psy8226 92 DGMIALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~IaImdP~kSWVAKwqr 110 (115)
.|--.=.||++.||-+.++
T Consensus 43 ~g~~vC~dP~~~WVq~~i~ 61 (66)
T 2q8r_E 43 RGHSVCTNPSDKWVQDYIK 61 (66)
T ss_dssp TSCEEEECTTSHHHHHHHH
T ss_pred CCCEEeCCCChHHHHHHHH
Confidence 4432334999999999874
No 36
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.46 E-value=17 Score=29.16 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=15.0
Q ss_pred ccccCCcccccccccccCCCCCchh
Q psy8226 48 AETINPRTTSTFDQFEFDGCDNCDE 72 (115)
Q Consensus 48 ~ACl~C~lVkT~dQF~~~GCPNC~~ 72 (115)
+.|..|+.- =.|.+-+||||++
T Consensus 209 l~Cs~C~t~---W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 209 LSCSLCACE---WHYVRIKCSHCEE 230 (309)
T ss_dssp EEETTTCCE---EECCTTSCSSSCC
T ss_pred EEeCCCCCE---EeecCcCCcCCCC
Confidence 458888743 3445568999985
No 37
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=27.45 E-value=22 Score=24.10 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=18.5
Q ss_pred cccccCCccccccc------------cccc--C--CCCCchh
Q psy8226 47 SAETINPRTTSTFD------------QFEF--D--GCDNCDE 72 (115)
Q Consensus 47 ~~ACl~C~lVkT~d------------QF~~--~--GCPNC~~ 72 (115)
...|..|++|-..+ .|.+ + -||.|+.
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 45799999998763 2433 2 6999984
No 38
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=27.29 E-value=16 Score=27.55 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=19.4
Q ss_pred ccccceEEEeecCCCCceeEcCCCCccccccCCcccccccc
Q psy8226 21 TLAGLKVVGVHNEDHRPWTIDPIPSASAETINPRTTSTFDQ 61 (115)
Q Consensus 21 ~~~~~~~~~~~~e~~~p~~i~p~~~~~~ACl~C~lVkT~dQ 61 (115)
.+.|-+| |+|+||.| |+.|.-+.+...
T Consensus 15 ~~~g~~~--v~~~dgkP------------cr~C~~~~d~~~ 41 (189)
T 4e0i_A 15 GLSGRKI--IYDEDGKP------------SRSCNTLLDFQY 41 (189)
T ss_dssp CSEETTE--ECCCSSSS------------CSTTSCHHHHHH
T ss_pred CCCCCee--eeCCCCCC------------CccccCHHHHHH
Confidence 4677777 58999999 778876554443
No 39
>1b3a_A Protein (rantes); chemical protein synthesis, chemokine, HIV-1, anti-HIV protein; HET: AOP; 1.60A {Synthetic} SCOP: d.9.1.1 PDB: 1hrj_A 1rtn_A 1rto_A 1u4l_A* 1u4m_A* 2l9h_A 1u4p_A 1eqt_A 1u4r_A 2vxw_A
Probab=26.57 E-value=25 Score=21.66 Aligned_cols=18 Identities=17% Similarity=0.638 Sum_probs=13.5
Q ss_pred ceE-EEEeCCCchHHHhhhc
Q psy8226 92 DGM-IALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~-IaImdP~kSWVAKwqr 110 (115)
.|- |. .||++.||-+.++
T Consensus 44 ~g~~vC-~dP~~~WVq~~ik 62 (67)
T 1b3a_A 44 KNRQVC-ANPEKKWVREYIN 62 (67)
T ss_dssp TCCEEE-ECTTSHHHHHHHH
T ss_pred CCCEEe-CCCChHHHHHHHH
Confidence 443 44 5999999999874
No 40
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=26.53 E-value=19 Score=26.84 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=17.1
Q ss_pred cccccCCcccccccccccCCCCCchh
Q psy8226 47 SAETINPRTTSTFDQFEFDGCDNCDE 72 (115)
Q Consensus 47 ~~ACl~C~lVkT~dQF~~~GCPNC~~ 72 (115)
...|+.|++|-..+ .-.-||.|+.
T Consensus 171 ~~~C~~CG~i~~g~--~p~~CP~C~~ 194 (202)
T 1yuz_A 171 FHLCPICGYIHKGE--DFEKCPICFR 194 (202)
T ss_dssp EEECSSSCCEEESS--CCSBCTTTCC
T ss_pred EEEECCCCCEEcCc--CCCCCCCCCC
Confidence 45699999997642 1146999984
No 41
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=25.67 E-value=21 Score=22.96 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=30.5
Q ss_pred CccccccCCcccccccccccCCCCCchhhhcccCCCCccccccccccceEEEEeCCCchHHHhhhc
Q psy8226 45 SASAETINPRTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQR 110 (115)
Q Consensus 45 ~~~~ACl~C~lVkT~dQF~~~GCPNC~~~L~m~gd~d~v~dCTT~nF~G~IaImdP~kSWVAKwqr 110 (115)
..+.+|-.|.++....- .+|+-|+.- +.. . ..+-+...|.+....||+.
T Consensus 6 ~~~W~CP~CTf~N~p~~---p~CEmC~~p------rp~-------~-~~~p~~~~p~~~~~~~~~~ 54 (64)
T 3b08_B 6 PVGWQCPGCTFINKPTR---PGCEMCCRA------RPE-------T-YQIPASYQPDEEERARLAG 54 (64)
T ss_dssp CCSEECTTTCCEECTTC---SBCTTTCCB------CCS-------S-CCCCTTCCCCHHHHHHHHH
T ss_pred CCCCcCCCccccCCCCC---CccCcCCCC------CCc-------c-ccCccccCCCccccccccc
Confidence 44568999999987754 579999841 110 0 1122234577788888763
No 42
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=25.19 E-value=6.1 Score=30.52 Aligned_cols=35 Identities=31% Similarity=0.711 Sum_probs=24.2
Q ss_pred cCCCCccccccccccc--eEEE----EeCCCchHHHhhhcc
Q psy8226 77 KNSRDNVYNCTSSNFD--GMIA----LMDPKDSWVAKWQRI 111 (115)
Q Consensus 77 ~gd~d~v~dCTT~nF~--G~Ia----ImdP~kSWVAKwqrI 111 (115)
+.+-+-|.|-|-..|+ |+=. |++.+.+|++|||..
T Consensus 87 k~g~eyVfDlTAhQF~n~g~s~l~gPiI~te~~W~~ryq~a 127 (186)
T 4g29_A 87 KEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMA 127 (186)
T ss_dssp ETTEEEEEETTGGGGTTTTCTTCCSCEEEEHHHHHHHHHHC
T ss_pred ecCceEEEcccHHHHHhcCCccCCCcccccHHHHHHHHHHH
Confidence 3445556777777787 5421 456899999999964
No 43
>2q8t_A CCL14; common CC chemokine fold, cytokine; 2.23A {Homo sapiens}
Probab=24.15 E-value=29 Score=21.86 Aligned_cols=18 Identities=28% Similarity=0.842 Sum_probs=13.4
Q ss_pred ceE-EEEeCCCchHHHhhhc
Q psy8226 92 DGM-IALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~-IaImdP~kSWVAKwqr 110 (115)
.|- |. .||++.||-+.++
T Consensus 51 ~g~~vC-adP~~~WVq~~i~ 69 (74)
T 2q8t_A 51 RGHSVC-TNPSDKWVQDYIK 69 (74)
T ss_dssp TSCEEE-ECTTSHHHHHHHH
T ss_pred CCCEEe-CCCChHHHHHHHH
Confidence 443 44 4999999999874
No 44
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=24.04 E-value=27 Score=19.96 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=12.1
Q ss_pred ccccccCCCCCchhhh
Q psy8226 59 FDQFEFDGCDNCDEFL 74 (115)
Q Consensus 59 ~dQF~~~GCPNC~~~L 74 (115)
.-.|...+||.|..+.
T Consensus 5 vv~f~~~~C~~C~~~~ 20 (85)
T 1nho_A 5 IEVFTSPTCPYCPMAI 20 (85)
T ss_dssp EEEESCSSSCCSTTHH
T ss_pred EEEEECCCCcchHHHH
Confidence 4457788999998654
No 45
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.01 E-value=27 Score=21.56 Aligned_cols=14 Identities=0% Similarity=-0.356 Sum_probs=10.1
Q ss_pred cccccCCccccccc
Q psy8226 47 SAETINPRTTSTFD 60 (115)
Q Consensus 47 ~~ACl~C~lVkT~d 60 (115)
...|..|++|-..+
T Consensus 3 ~y~C~vCGyvYd~~ 16 (54)
T 4rxn_A 3 KYTCTVCGYIYDPE 16 (54)
T ss_dssp CEEETTTCCEECTT
T ss_pred ceECCCCCeEECCC
Confidence 34699999987653
No 46
>1eig_A Eotaxin-2; chemokine, chemotactic cytokine, eosinophil chemoattractant; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1eih_A
Probab=23.55 E-value=30 Score=21.71 Aligned_cols=18 Identities=33% Similarity=0.811 Sum_probs=13.4
Q ss_pred ceE-EEEeCCCchHHHhhhc
Q psy8226 92 DGM-IALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~-IaImdP~kSWVAKwqr 110 (115)
.|- |. .||++.||-+.++
T Consensus 43 ~g~~vC-~dP~~~WVq~~ik 61 (73)
T 1eig_A 43 KGQQSC-GDPKQEWVQRYMK 61 (73)
T ss_dssp TSCCEE-ECTTSHHHHHHHH
T ss_pred CCCEEe-CCCChHHHHHHHH
Confidence 443 44 4999999999874
No 47
>1cm9_A VMIP-II, protein (viral macrophage inflammatory protein-II; chemokine, karposi'S sarcoma; 2.10A {Human herpesvirus 8} SCOP: d.9.1.1 PDB: 1hhv_A* 1hfg_A 1hfn_A 1vmp_A 2fht_A 2fj2_A
Probab=23.49 E-value=30 Score=21.76 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=13.5
Q ss_pred ceEEEEeCCCchHHHhhhc
Q psy8226 92 DGMIALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~IaImdP~kSWVAKwqr 110 (115)
.|--.=.||++.||-+.++
T Consensus 49 ~g~~vCadP~~~WVq~~i~ 67 (74)
T 1cm9_A 49 RGRQVCADKSKDWVKKLMQ 67 (74)
T ss_dssp TSCEEEECTTSHHHHHHHH
T ss_pred CCCEEeCCCChHHHHHHHH
Confidence 4442335999999999874
No 48
>1f2l_A Fractalkine; chemoattractant, neurotactin, cytokine; 2.00A {Homo sapiens} SCOP: d.9.1.1 PDB: 3ona_B 1b2t_A
Probab=23.48 E-value=30 Score=22.04 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=13.5
Q ss_pred ceEEEEeCCCchHHHhhhc
Q psy8226 92 DGMIALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~IaImdP~kSWVAKwqr 110 (115)
.|--.=.||++.||-+.++
T Consensus 45 ~gr~vCadP~~~WVq~~ik 63 (76)
T 1f2l_A 45 QHRLFCADPKEQWVKDAMQ 63 (76)
T ss_dssp TCCEEEECTTSHHHHHHHH
T ss_pred CCCEEeCCCChHHHHHHHH
Confidence 4542334999999999874
No 49
>2ra4_A Small-inducible cytokine A13; CCL13, MCP-4, CC chemokine family, chemotaxis, monocytes, CY inflammatory response, pyrrolidone carboxylic acid; 1.70A {Homo sapiens}
Probab=23.42 E-value=30 Score=21.92 Aligned_cols=18 Identities=39% Similarity=0.876 Sum_probs=13.4
Q ss_pred ceE-EEEeCCCchHHHhhhc
Q psy8226 92 DGM-IALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~-IaImdP~kSWVAKwqr 110 (115)
.|- |. .||++.||-+.++
T Consensus 47 ~g~~vC-adP~~~WVq~~ik 65 (76)
T 2ra4_A 47 LGKEIC-ADPKEKWVQNYMK 65 (76)
T ss_dssp TSCEEE-ECTTSHHHHHHHH
T ss_pred CCCEEe-CCCChHHHHHHHH
Confidence 444 44 5999999999874
No 50
>1nr4_A CCL17, thymus and activation-regulated chemokine, CC chemokine; TARC, cytokine, chemotaxis; 1.72A {Synthetic} SCOP: d.9.1.1 PDB: 1nr2_A
Probab=23.16 E-value=31 Score=21.54 Aligned_cols=18 Identities=28% Similarity=0.448 Sum_probs=13.5
Q ss_pred ceE-EEEeCCCchHHHhhhc
Q psy8226 92 DGM-IALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~-IaImdP~kSWVAKwqr 110 (115)
.|- |. .||++.||-+.++
T Consensus 45 ~g~~vC-~dP~~~WVq~~i~ 63 (71)
T 1nr4_A 45 QGRAIC-SDPNNKRVKNAVK 63 (71)
T ss_dssp TSCEEE-ECTTSHHHHHHHH
T ss_pred CCCEEe-CCCChHHHHHHHH
Confidence 454 44 4999999999864
No 51
>1dok_A MCP-1, MCAF, monocyte chemoattractant protein 1; cytokine,; 1.85A {Homo sapiens} SCOP: d.9.1.1 PDB: 1dol_A 1dom_A 1don_A 2bdn_A 3ifd_A 2nz1_D 1ml0_D 1bo0_A 1ncv_A
Probab=22.79 E-value=32 Score=21.83 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=13.5
Q ss_pred ceE-EEEeCCCchHHHhhhc
Q psy8226 92 DGM-IALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~-IaImdP~kSWVAKwqr 110 (115)
.|- |. .||++.||-+.++
T Consensus 48 ~g~~vC-adP~~~WVq~~i~ 66 (77)
T 1dok_A 48 VAKEIC-ADPKQKWVQDSMD 66 (77)
T ss_dssp TCCEEE-ECTTSHHHHHHHH
T ss_pred CCCEEe-CCCChHHHHHHHH
Confidence 454 44 4999999999874
No 52
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=22.14 E-value=26 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.0
Q ss_pred cccccCCcccccccccccCCCCCchhhhc
Q psy8226 47 SAETINPRTTSTFDQFEFDGCDNCDEFLH 75 (115)
Q Consensus 47 ~~ACl~C~lVkT~dQF~~~GCPNC~~~L~ 75 (115)
-..|..|+-|.+..+ .|+||+..+|
T Consensus 180 i~~C~iC~~iv~~g~----~C~~C~~~~H 204 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ----SCETCGIRMH 204 (238)
T ss_dssp CCBCTTTCSBCSSCE----ECSSSCCEEC
T ss_pred CCcCcchhhHHhCCc----ccCccChHHH
Confidence 456999999988776 3888876654
No 53
>1g2s_A Eotaxin-3; beta-BETA-beta-alpha helix, cytokine; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1g2t_A
Probab=21.31 E-value=35 Score=21.36 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=13.6
Q ss_pred ceEEEEeCCCchHHHhhhc
Q psy8226 92 DGMIALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~IaImdP~kSWVAKwqr 110 (115)
.|--.=.||++.||-+.++
T Consensus 45 ~g~~vCadP~~~WVq~~i~ 63 (71)
T 1g2s_A 45 RGKKVCTHPRKKWVQKYIS 63 (71)
T ss_dssp TSCEEEECSSSHHHHHHHH
T ss_pred CCCEEeCCCChHHHHHHHH
Confidence 4542335999999999874
No 54
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=20.59 E-value=18 Score=27.83 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=15.6
Q ss_pred cccCCcccccccc----ccc-CCCCCchh
Q psy8226 49 ETINPRTTSTFDQ----FEF-DGCDNCDE 72 (115)
Q Consensus 49 ACl~C~lVkT~dQ----F~~-~GCPNC~~ 72 (115)
.|..|+.....+| |.. .-||+|++
T Consensus 136 ~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~ 164 (279)
T 1ltl_A 136 ECRGCMRHHAVTQSTNMITEPSLCSECGG 164 (279)
T ss_dssp EETTTCCEEEEECSSSSCCCCSCCTTTCC
T ss_pred EcCCCCCEEEEEecCCcccCCCcCCCCCC
Confidence 4999996654443 222 35999974
No 55
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=20.53 E-value=1.1e+02 Score=23.36 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=12.6
Q ss_pred cccceEEEeecCCCCceeEcCCCC
Q psy8226 22 LAGLKVVGVHNEDHRPWTIDPIPS 45 (115)
Q Consensus 22 ~~~~~~~~~~~e~~~p~~i~p~~~ 45 (115)
..||.| .+.+|+=..|-|++.
T Consensus 188 ~~GLqV---~~~~g~W~~V~p~pg 208 (280)
T 3on7_A 188 EPGLQV---KAKDGSWLDVPSDFG 208 (280)
T ss_dssp CCCEEE---ECTTSCEEECCCCTT
T ss_pred CCCeEE---EcCCCCEEECcCCCC
Confidence 346554 456777666666654
No 56
>1zxt_A ORF K6, VMIP-I, functional macrophage inflammatory protein 1-ALPH; chemokine fold, greek KEY motif, signaling protein; 1.70A {Human herpesvirus 8}
Probab=20.49 E-value=38 Score=21.72 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=13.7
Q ss_pred ceEEEEeCCCchHHHhhhc
Q psy8226 92 DGMIALMDPKDSWVAKWQR 110 (115)
Q Consensus 92 ~G~IaImdP~kSWVAKwqr 110 (115)
.|--.=.||++.||-+.++
T Consensus 46 ~g~~vCadP~~~WVq~~ik 64 (76)
T 1zxt_A 46 RGRQICADPSKNWVRQLMQ 64 (76)
T ss_dssp TCCEEEECTTSHHHHHHHH
T ss_pred CCCEEeCCCChHHHHHHHH
Confidence 4542335999999999874
No 57
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=20.35 E-value=14 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=12.5
Q ss_pred ccccccCCCCCchhhhc
Q psy8226 59 FDQFEFDGCDNCDEFLH 75 (115)
Q Consensus 59 ~dQF~~~GCPNC~~~L~ 75 (115)
..-|...+||.|.....
T Consensus 4 ~~~f~~~~C~~C~~~~~ 20 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQ 20 (80)
T ss_dssp EEEEEECSCHHHHHHHH
T ss_pred eEEEeCCCCCchHHHHH
Confidence 44577889999996543
No 58
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=20.21 E-value=33 Score=18.92 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.7
Q ss_pred CCchHHHhhhc
Q psy8226 100 PKDSWVAKWQR 110 (115)
Q Consensus 100 P~kSWVAKwqr 110 (115)
|-.||+|+..+
T Consensus 2 p~~~~~A~rYG 12 (27)
T 2bzw_B 2 PPNLWAAQRYG 12 (27)
T ss_dssp CGGGHHHHHHH
T ss_pred chhHHHHHHHh
Confidence 77899998754
No 59
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=20.06 E-value=17 Score=21.69 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=9.9
Q ss_pred ccccCCCCCchhhh
Q psy8226 61 QFEFDGCDNCDEFL 74 (115)
Q Consensus 61 QF~~~GCPNC~~~L 74 (115)
.|...+|+.|..+.
T Consensus 25 ~f~~~~C~~C~~~~ 38 (106)
T 3die_A 25 DFWATACGPCKMIA 38 (106)
T ss_dssp EEECSBCHHHHHHH
T ss_pred EEECCCCHHHHHHh
Confidence 36667899998643
Done!