Your job contains 1 sequence.
>psy8226
MRTIDPGLLTLYYRPPPKPSTLAGLKVVGVHNEDHRPWTIDPIPSASAETINPRTTSTFD
QFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRRTD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8226
(115 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F2Z535 - symbol:LOC100515097 "Uncharacterized p... 237 5.7e-20 1
FB|FBgn0028683 - symbol:spt4 "spt4" species:7227 "Drosoph... 234 1.2e-19 1
UNIPROTKB|J3QSB9 - symbol:SUPT4H1 "Transcription elongati... 233 1.5e-19 1
UNIPROTKB|Q3SYX6 - symbol:SUPT4H1 "Transcription elongati... 232 1.9e-19 1
UNIPROTKB|E2RAN9 - symbol:SUPT4H1 "Uncharacterized protei... 232 1.9e-19 1
UNIPROTKB|P63272 - symbol:SUPT4H1 "Transcription elongati... 232 1.9e-19 1
UNIPROTKB|K7GKT6 - symbol:LOC100515097 "Uncharacterized p... 232 1.9e-19 1
UNIPROTKB|Q4R941 - symbol:SUPT4H1 "Transcription elongati... 232 1.9e-19 1
MGI|MGI:107416 - symbol:Supt4a "suppressor of Ty 4A" spec... 232 1.9e-19 1
RGD|1306372 - symbol:Supt4h1 "suppressor of Ty 4 homolog ... 232 1.9e-19 1
ZFIN|ZDB-GENE-040718-214 - symbol:supt4h1 "suppressor of ... 232 1.9e-19 1
UNIPROTKB|Q5HZ97 - symbol:supt4h1 "Transcription elongati... 230 3.1e-19 1
UNIPROTKB|E1C4X4 - symbol:SUPT4H1 "Uncharacterized protei... 229 4.0e-19 1
UNIPROTKB|Q5RFH5 - symbol:SUPT4H1 "Transcription elongati... 229 4.0e-19 1
MGI|MGI:1335090 - symbol:Supt4b "suppressor of Ty 4B" spe... 225 1.1e-18 1
WB|WBGene00005014 - symbol:spt-4 species:6239 "Caenorhabd... 183 3.0e-14 1
UNIPROTKB|J3QR04 - symbol:SUPT4H1 "Transcription elongati... 153 4.5e-11 1
ASPGD|ASPL0000049906 - symbol:AN10280 species:162425 "Eme... 151 7.4e-11 1
TAIR|locus:505006588 - symbol:AT5G08565 species:3702 "Ara... 149 1.2e-10 1
UNIPROTKB|D3DTZ5 - symbol:SUPT4H1 "Suppressor of Ty 4 hom... 148 1.5e-10 1
TAIR|locus:2160579 - symbol:SPT42 "SPT4 homolog 2" specie... 146 2.5e-10 1
CGD|CAL0002982 - symbol:orf19.3947 species:5476 "Candida ... 128 2.0e-08 1
GENEDB_PFALCIPARUM|PF10_0293 - symbol:PF10_0293 "transcri... 114 6.1e-07 1
UNIPROTKB|Q8IJA5 - symbol:PF10_0293 "Transcription factor... 114 6.1e-07 1
SGD|S000003295 - symbol:SPT4 "Component of the universall... 109 2.1e-06 1
DICTYBASE|DDB_G0285293 - symbol:spt4 "transcription initi... 99 2.4e-05 1
POMBASE|SPBC21C3.16c - symbol:spt4 "transcription elongat... 97 3.9e-05 1
>UNIPROTKB|F2Z535 [details] [associations]
symbol:LOC100515097 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR009287 PIRSF:PIRSF025023
GO:GO:0008270 GO:GO:0045944 GO:GO:0000122 GO:GO:0006368
GO:GO:0034244 GO:GO:0032786 KO:K15171 OMA:SWVAKWQ
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 GO:GO:0032044 EMBL:CU681830 UniGene:Ssc.5976
ProteinModelPortal:F2Z535 SMR:F2Z535 Ensembl:ENSSSCT00000019201
KEGG:ssc:100515097 Uniprot:F2Z535
Length = 96
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 38/55 (69%), Positives = 49/55 (89%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIR 112
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+R
Sbjct: 21 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVR 75
>FB|FBgn0028683 [details] [associations]
symbol:spt4 "spt4" species:7227 "Drosophila melanogaster"
[GO:0016582 "non-covalent chromatin modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IDA] InterPro:IPR009287 PIRSF:PIRSF025023
EMBL:AE013599 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0000122 GO:GO:0046982 GO:GO:0006368 GO:GO:0008023
GO:GO:0005703 GO:GO:0005705 GO:GO:0032786 KO:K15171 eggNOG:COG5204
OMA:SWVAKWQ InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 GeneTree:ENSGT00390000018559 EMBL:AF108353
EMBL:AF109133 EMBL:AY075424 RefSeq:NP_610802.1 UniGene:Dm.19918
ProteinModelPortal:Q9TVQ5 SMR:Q9TVQ5 MINT:MINT-813567 STRING:Q9TVQ5
PaxDb:Q9TVQ5 PRIDE:Q9TVQ5 EnsemblMetazoa:FBtr0087840 GeneID:36387
KEGG:dme:Dmel_CG12372 UCSC:CG12372-RA CTD:36387 FlyBase:FBgn0028683
InParanoid:Q9TVQ5 OrthoDB:EOG4BCC4G PhylomeDB:Q9TVQ5
GenomeRNAi:36387 NextBio:798282 Bgee:Q9TVQ5 GermOnline:CG12372
GO:GO:0032785 Uniprot:Q9TVQ5
Length = 116
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 40/56 (71%), Positives = 49/56 (87%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
+FDQFE DGC+NC+EFL MKN++DNVY+ TS+NFDG+IAL P DSWVAKWQR+ R
Sbjct: 24 SFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLSR 79
>UNIPROTKB|J3QSB9 [details] [associations]
symbol:SUPT4H1 "Transcription elongation factor SPT4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR009287 PIRSF:PIRSF025023 GO:GO:0005634
GO:GO:0008270 GO:GO:0032786 EMBL:AC004687 InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093 HGNC:HGNC:11467
ProteinModelPortal:J3QSB9 Ensembl:ENST00000581540 Uniprot:J3QSB9
Length = 108
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 37/56 (66%), Positives = 49/56 (87%)
Query: 56 TSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
+ T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 13 SQTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 68
>UNIPROTKB|Q3SYX6 [details] [associations]
symbol:SUPT4H1 "Transcription elongation factor SPT4"
species:9913 "Bos taurus" [GO:0032044 "DSIF complex" evidence=ISS]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0032786 "positive regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR009287 PIRSF:PIRSF025023
GO:GO:0046872 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
GO:GO:0006368 GO:GO:0034244 GO:GO:0032786 KO:K15171 eggNOG:COG5204
HOGENOM:HOG000172685 OMA:SWVAKWQ InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
GeneTree:ENSGT00390000018559 HOVERGEN:HBG055988 OrthoDB:EOG4P2Q3R
GO:GO:0032044 EMBL:BT025461 EMBL:BC103340 IPI:IPI00692284
RefSeq:NP_001029964.1 UniGene:Bt.49115 ProteinModelPortal:Q3SYX6
SMR:Q3SYX6 STRING:Q3SYX6 Ensembl:ENSBTAT00000004389 GeneID:616425
KEGG:bta:616425 CTD:6827 InParanoid:Q3SYX6 NextBio:20900127
Uniprot:Q3SYX6
Length = 117
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>UNIPROTKB|E2RAN9 [details] [associations]
symbol:SUPT4H1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0034244 "negative regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR009287 PIRSF:PIRSF025023
GO:GO:0008270 GO:GO:0045944 GO:GO:0000122 GO:GO:0006368
GO:GO:0034244 GO:GO:0032786 KO:K15171 OMA:SWVAKWQ
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 GeneTree:ENSGT00390000018559 GO:GO:0032044 CTD:6827
EMBL:AAEX03006574 RefSeq:XP_853156.1 ProteinModelPortal:E2RAN9
SMR:E2RAN9 Ensembl:ENSCAFT00000027758 GeneID:609757 KEGG:cfa:609757
NextBio:20895343 Uniprot:E2RAN9
Length = 117
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>UNIPROTKB|P63272 [details] [associations]
symbol:SUPT4H1 "Transcription elongation factor SPT4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0032785 "negative
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0032044 "DSIF complex" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR009287 PIRSF:PIRSF025023 Reactome:REACT_116125
GO:GO:0016032 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 GO:GO:0000122 EMBL:CH471109
GO:GO:0006368 GO:GO:0034244 Reactome:REACT_1788 GO:GO:0050434
Reactome:REACT_1892 GO:GO:0032786 KO:K15171 eggNOG:COG5204
HOGENOM:HOG000172685 OMA:SWVAKWQ InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
HOVERGEN:HBG055988 OrthoDB:EOG4P2Q3R GO:GO:0032044 CTD:6827
GO:GO:0032785 EMBL:U38818 EMBL:U38817 EMBL:U43923 EMBL:AK129758
EMBL:AK311986 EMBL:CR407663 EMBL:BC002802 IPI:IPI00002895
RefSeq:NP_003159.1 UniGene:Hs.439481 PDB:3H7H PDBsum:3H7H
ProteinModelPortal:P63272 SMR:P63272 IntAct:P63272
MINT:MINT-1382313 STRING:P63272 PhosphoSite:P63272 DMDM:54039624
PaxDb:P63272 PeptideAtlas:P63272 PRIDE:P63272 DNASU:6827
Ensembl:ENST00000225504 Ensembl:ENST00000580947 GeneID:6827
KEGG:hsa:6827 UCSC:uc002iwe.1 GeneCards:GC17M056422
H-InvDB:HIX0014028 HGNC:HGNC:11467 MIM:603555 neXtProt:NX_P63272
PharmGKB:PA36253 InParanoid:P63272 PhylomeDB:P63272
EvolutionaryTrace:P63272 GenomeRNAi:6827 NextBio:26657
ArrayExpress:P63272 Bgee:P63272 CleanEx:HS_SUPT4H1
Genevestigator:P63272 GermOnline:ENSG00000108375 Uniprot:P63272
Length = 117
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>UNIPROTKB|K7GKT6 [details] [associations]
symbol:LOC100515097 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009287 PIRSF:PIRSF025023 InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
GeneTree:ENSGT00390000018559 EMBL:CU681830 RefSeq:XP_003131694.1
Ensembl:ENSSSCT00000033569 GeneID:100515097 Uniprot:K7GKT6
Length = 117
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>UNIPROTKB|Q4R941 [details] [associations]
symbol:SUPT4H1 "Transcription elongation factor SPT4"
species:9541 "Macaca fascicularis" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR009287 PIRSF:PIRSF025023 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0032786 InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
HOVERGEN:HBG055988 GO:GO:0032044 EMBL:AB168256
ProteinModelPortal:Q4R941 SMR:Q4R941 Uniprot:Q4R941
Length = 117
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>MGI|MGI:107416 [details] [associations]
symbol:Supt4a "suppressor of Ty 4A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=ISO] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0032044 "DSIF complex" evidence=ISO]
[GO:0032785 "negative regulation of DNA-dependent transcription,
elongation" evidence=ISO] [GO:0032786 "positive regulation of
DNA-dependent transcription, elongation" evidence=ISO] [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
InterPro:IPR009287 PIRSF:PIRSF025023 MGI:MGI:107416 GO:GO:0046872
GO:GO:0008270 GO:GO:0045944 GO:GO:0000122 EMBL:CH466556
GO:GO:0006368 GO:GO:0034244 GO:GO:0032786 EMBL:CU393486 KO:K15171
EMBL:AL604022 eggNOG:COG5204 OMA:SWVAKWQ InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093 EMBL:U43154
EMBL:U96809 EMBL:AK167941 EMBL:BC024391 EMBL:BC061174 EMBL:BC087923
EMBL:BC141092 IPI:IPI00124000 RefSeq:NP_033322.1 UniGene:Mm.622
ProteinModelPortal:P63271 SMR:P63271 STRING:P63271
PhosphoSite:P63271 PaxDb:P63271 PRIDE:P63271
Ensembl:ENSMUST00000093955 GeneID:20922 KEGG:mmu:20922
UCSC:uc007kuj.1 CTD:20922 GeneTree:ENSGT00390000018559
HOVERGEN:HBG055988 InParanoid:B2KGH6 OrthoDB:EOG4P2Q3R
ChiTaRS:SUPT4H1 NextBio:299829 Bgee:P63271 CleanEx:MM_SUPT4H1
Genevestigator:P63271 GermOnline:ENSMUSG00000020485 GO:GO:0032044
Uniprot:P63271
Length = 117
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>RGD|1306372 [details] [associations]
symbol:Supt4h1 "suppressor of Ty 4 homolog 1 (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032044 "DSIF
complex" evidence=IEA;ISO] [GO:0032785 "negative regulation of
DNA-dependent transcription, elongation" evidence=ISO] [GO:0032786
"positive regulation of DNA-dependent transcription, elongation"
evidence=IEA;ISO] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009287
PIRSF:PIRSF025023 RGD:1306372 GO:GO:0008270 GO:GO:0045944
GO:GO:0000122 GO:GO:0006368 EMBL:CH473948 GO:GO:0034244
GO:GO:0032786 KO:K15171 eggNOG:COG5204 HOGENOM:HOG000172685
OMA:SWVAKWQ InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 GeneTree:ENSGT00390000018559 HOVERGEN:HBG055988
OrthoDB:EOG4P2Q3R GO:GO:0032044 CTD:6827 EMBL:BC168730
IPI:IPI00369934 RefSeq:NP_001099298.2 UniGene:Rn.7906 SMR:B5DEM7
STRING:B5DEM7 Ensembl:ENSRNOT00000010448 GeneID:287608
KEGG:rno:287608 NextBio:626600 Genevestigator:B5DEM7 Uniprot:B5DEM7
Length = 117
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 77
>ZFIN|ZDB-GENE-040718-214 [details] [associations]
symbol:supt4h1 "suppressor of Ty 4 homolog 1 (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032786 "positive regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032044 "DSIF complex"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR009287 PIRSF:PIRSF025023 ZFIN:ZDB-GENE-040718-214
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 GO:GO:0032786 KO:K15171
eggNOG:COG5204 HOGENOM:HOG000172685 OMA:SWVAKWQ InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
GeneTree:ENSGT00390000018559 HOVERGEN:HBG055988 OrthoDB:EOG4P2Q3R
GO:GO:0032044 CTD:6827 EMBL:BC076290 IPI:IPI00492271
RefSeq:NP_001002509.1 UniGene:Dr.79365 ProteinModelPortal:Q6DGQ0
STRING:Q6DGQ0 PRIDE:Q6DGQ0 Ensembl:ENSDART00000048843 GeneID:436782
KEGG:dre:436782 InParanoid:Q6DGQ0 NextBio:20831217 Bgee:Q6DGQ0
Uniprot:Q6DGQ0
Length = 117
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNC+ +L MK +R+ VY CTSS+FDG+IA+M P+DSWVAKWQRI
Sbjct: 24 TIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMMSPEDSWVAKWQRI 77
>UNIPROTKB|Q5HZ97 [details] [associations]
symbol:supt4h1 "Transcription elongation factor SPT4"
species:8355 "Xenopus laevis" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR009287 PIRSF:PIRSF025023 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0032786 KO:K15171
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 HOVERGEN:HBG055988 GO:GO:0032044 CTD:6827
EMBL:BC089123 RefSeq:NP_001089206.1 UniGene:Xl.23755
ProteinModelPortal:Q5HZ97 GeneID:734253 KEGG:xla:734253
Xenbase:XB-GENE-977396 Uniprot:Q5HZ97
Length = 117
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG++A+M P DSWV+KWQRI
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIVAMMSPDDSWVSKWQRI 77
>UNIPROTKB|E1C4X4 [details] [associations]
symbol:SUPT4H1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0032044 "DSIF complex" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009287
PIRSF:PIRSF025023 GO:GO:0008270 GO:GO:0045944 GO:GO:0000122
GO:GO:0006368 GO:GO:0034244 GO:GO:0032786 KO:K15694 OMA:SWVAKWQ
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 GeneTree:ENSGT00390000018559 GO:GO:0032044 CTD:6827
EMBL:AADN02026094 IPI:IPI00578781 RefSeq:NP_001244215.1
UniGene:Gga.7978 Ensembl:ENSGALT00000001394 GeneID:417470
KEGG:gga:417470 NextBio:20921033 Uniprot:E1C4X4
Length = 117
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T +QFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQRI
Sbjct: 24 TLEQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRI 77
>UNIPROTKB|Q5RFH5 [details] [associations]
symbol:SUPT4H1 "Transcription elongation factor SPT4"
species:9601 "Pongo abelii" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR009287 PIRSF:PIRSF025023 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0032786 KO:K15171
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 HOVERGEN:HBG055988 GO:GO:0032044 CTD:6827
EMBL:CR857182 RefSeq:NP_001129015.1 UniGene:Pab.19873
ProteinModelPortal:Q5RFH5 GeneID:100190855 KEGG:pon:100190855
InParanoid:Q5RFH5 Uniprot:Q5RFH5
Length = 117
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+IA+M P DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRV 77
>MGI|MGI:1335090 [details] [associations]
symbol:Supt4b "suppressor of Ty 4B" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR009287 PIRSF:PIRSF025023 MGI:MGI:1335090
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 GO:GO:0032786 KO:K15171
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 HOVERGEN:HBG055988 GO:GO:0032044 EMBL:U96810
IPI:IPI00129709 RefSeq:NP_035639.1 UniGene:Mm.7821
ProteinModelPortal:Q9Z199 SMR:Q9Z199 STRING:Q9Z199 GeneID:100041294
KEGG:mmu:100041294 UCSC:uc011xck.1 InParanoid:Q9Z199 NextBio:450899
Genevestigator:Q9Z199 GermOnline:ENSMUSG00000075260 Uniprot:Q9Z199
Length = 117
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 36/54 (66%), Positives = 47/54 (87%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG+ A+M P+DSWV+KWQR+
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGINAMMSPEDSWVSKWQRV 77
>WB|WBGene00005014 [details] [associations]
symbol:spt-4 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032786 "positive regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] InterPro:IPR009287
PIRSF:PIRSF025023 GO:GO:0005634 GO:GO:0008340 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0032786 KO:K15171 eggNOG:COG5204
HOGENOM:HOG000172685 OMA:SWVAKWQ InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
GeneTree:ENSGT00390000018559 EMBL:FO080712 PIR:T33605
RefSeq:NP_497135.1 ProteinModelPortal:Q9TZ93 SMR:Q9TZ93
DIP:DIP-25841N MINT:MINT-1067406 STRING:Q9TZ93 PaxDb:Q9TZ93
EnsemblMetazoa:F54C4.2 GeneID:175172 KEGG:cel:CELE_F54C4.2
UCSC:F54C4.2 CTD:175172 WormBase:F54C4.2 InParanoid:Q9TZ93
NextBio:887062 Uniprot:Q9TZ93
Length = 120
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 27/54 (50%), Positives = 42/54 (77%)
Query: 60 DQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
+ F+ +GC+NC++ LH+K + VY+CTS+N+DGMIA M +SWV KWQ+++R
Sbjct: 25 ESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQR 78
>UNIPROTKB|J3QR04 [details] [associations]
symbol:SUPT4H1 "Transcription elongation factor SPT4"
species:9606 "Homo sapiens" [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] EMBL:AC004687 InterPro:IPR016046 InterPro:IPR022800
PANTHER:PTHR12882 Pfam:PF06093 HGNC:HGNC:11467
ProteinModelPortal:J3QR04 Ensembl:ENST00000581166 Uniprot:J3QR04
Length = 59
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDG 93
T DQFE+DGCDNCD +L MK +R+ VY+CTSS+FDG
Sbjct: 24 TIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDG 59
>ASPGD|ASPL0000049906 [details] [associations]
symbol:AN10280 species:162425 "Emericella nidulans"
[GO:0032044 "DSIF complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0005724 "nuclear telomeric
heterochromatin" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0000182 "rDNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006342 "chromatin silencing" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0008298
"intracellular mRNA localization" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0090262
"regulation of transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:2001208 "negative regulation of transcription elongation from
RNA polymerase I promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:2000232 "regulation of rRNA processing"
evidence=IEA] [GO:2001209 "positive regulation of transcription
elongation from RNA polymerase I promoter" evidence=IEA]
InterPro:IPR009287 PIRSF:PIRSF025023 GO:GO:0005634 EMBL:BN001307
GO:GO:0008270 GO:GO:0032786 HOGENOM:HOG000172685 OMA:SWVAKWQ
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 EnsemblFungi:CADANIAT00008937 Uniprot:C8VMU3
Length = 120
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 61 QFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
+F +GC NCD L ++ + DN+ CTS F+G++ + DP SWVA+WQR+
Sbjct: 27 KFMREGCPNCDNVLGLRGNNDNIQECTSQVFEGLVTVNDPATSWVARWQRL 77
>TAIR|locus:505006588 [details] [associations]
symbol:AT5G08565 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032786 "positive regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0000394
"RNA splicing, via endonucleolytic cleavage and ligation"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR009287 PIRSF:PIRSF025023
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0032786 EMBL:AB006697 KO:K15171
EMBL:BT024785 EMBL:AK228575 EMBL:AY086462 IPI:IPI00526116
RefSeq:NP_568201.1 UniGene:At.32557 ProteinModelPortal:Q8LCQ3
SMR:Q8LCQ3 STRING:Q8LCQ3 PRIDE:Q8LCQ3 EnsemblPlants:AT5G08565.1
GeneID:830757 KEGG:ath:AT5G08565 TAIR:At5g08565 eggNOG:COG5204
HOGENOM:HOG000172685 InParanoid:Q8LCQ3 OMA:SWVAKWQ PhylomeDB:Q8LCQ3
ProtClustDB:CLSN2689546 Genevestigator:Q8LCQ3 GermOnline:AT5G08565
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 Uniprot:Q8LCQ3
Length = 116
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 54 RTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
R T+DQF GC+NC F +++ + + + T+ NF+G+I++MDP+ SW A+W RI
Sbjct: 23 RLVKTYDQFRDSGCENCP-FFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRI 79
>UNIPROTKB|D3DTZ5 [details] [associations]
symbol:SUPT4H1 "Suppressor of Ty 4 homolog 1 (S.
cerevisiae), isoform CRA_b" species:9606 "Homo sapiens" [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] EMBL:CH471109 GO:GO:0034244
EMBL:AC004687 InterPro:IPR016046 InterPro:IPR022800
PANTHER:PTHR12882 Pfam:PF06093 IPI:IPI00002895 UniGene:Hs.439481
HGNC:HGNC:11467 ProteinModelPortal:D3DTZ5 Ensembl:ENST00000577396
ArrayExpress:D3DTZ5 Bgee:D3DTZ5 Uniprot:D3DTZ5
Length = 76
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 24/36 (66%), Positives = 33/36 (91%)
Query: 76 MKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
MK +R+ VY+CTSS+FDG+IA+M P+DSWV+KWQR+
Sbjct: 1 MKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRV 36
>TAIR|locus:2160579 [details] [associations]
symbol:SPT42 "SPT4 homolog 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=RCA] InterPro:IPR009287
PIRSF:PIRSF025023 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
EMBL:AB005234 GO:GO:0032786 KO:K15171 eggNOG:COG5204
HOGENOM:HOG000172685 ProtClustDB:CLSN2689546 InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093 EMBL:AY035161
EMBL:AY063032 EMBL:AY084523 IPI:IPI00546821 RefSeq:NP_568976.1
UniGene:At.19652 ProteinModelPortal:Q94C60 SMR:Q94C60 STRING:Q94C60
PaxDb:Q94C60 PRIDE:Q94C60 EnsemblPlants:AT5G63670.1 GeneID:836487
KEGG:ath:AT5G63670 TAIR:At5g63670 InParanoid:Q94C60 OMA:YEADETY
PhylomeDB:Q94C60 Genevestigator:Q94C60 GermOnline:AT5G63670
Uniprot:Q94C60
Length = 116
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 54 RTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
R T+DQF GC+NC F M+ + + T+ NF+G+I++MDP SW A+W RI
Sbjct: 23 RLVKTYDQFRDAGCENCP-FFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRI 79
>CGD|CAL0002982 [details] [associations]
symbol:orf19.3947 species:5476 "Candida albicans" [GO:0000182
"rDNA binding" evidence=IEA] [GO:0032044 "DSIF complex"
evidence=IEA] [GO:0005724 "nuclear telomeric heterochromatin"
evidence=IEA] [GO:0033553 "rDNA heterochromatin" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000776 "kinetochore"
evidence=IEA] [GO:0006342 "chromatin silencing" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0008298
"intracellular mRNA localization" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0090262
"regulation of transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:2001208 "negative regulation of transcription elongation from
RNA polymerase I promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:2000232 "regulation of rRNA processing"
evidence=IEA] [GO:2001209 "positive regulation of transcription
elongation from RNA polymerase I promoter" evidence=IEA]
InterPro:IPR009287 PIRSF:PIRSF025023 CGD:CAL0002982 GO:GO:0005634
GO:GO:0000775 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0006351 EMBL:AACQ01000012 GO:GO:0032786 EMBL:AACQ01000011
KO:K15171 eggNOG:COG5204 InterPro:IPR016046 InterPro:IPR022800
PANTHER:PTHR12882 Pfam:PF06093 RefSeq:XP_721856.1
RefSeq:XP_722016.1 ProteinModelPortal:Q5AK73 STRING:Q5AK73
GeneID:3636300 GeneID:3636395 KEGG:cal:CaO19.11429
KEGG:cal:CaO19.3947 Uniprot:Q5AK73
Length = 112
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 66 GCDNCDEFLHMK-NSRDNVYNCTSSNFDGMIAL-MDPKDSWVAKWQRI 111
GC NC+ LH + N V +CTS +F+G++AL D K SWVA+W RI
Sbjct: 25 GCPNCESLLHYQYNDNKQVQDCTSPSFEGLVALGEDNKGSWVARWLRI 72
>GENEDB_PFALCIPARUM|PF10_0293 [details] [associations]
symbol:PF10_0293 "transcription factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR009287 PIRSF:PIRSF025023 GO:GO:0005634 GO:GO:0008270
GO:GO:0003682 EMBL:AE014185 GO:GO:0032786 KO:K15171
HOGENOM:HOG000172685 OMA:SWVAKWQ InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
RefSeq:XP_001347577.1 ProteinModelPortal:Q8IJA5 PRIDE:Q8IJA5
EnsemblProtists:PF10_0293:mRNA GeneID:810450 KEGG:pfa:PF10_0293
EuPathDB:PlasmoDB:PF3D7_1030000 ProtClustDB:CLSZ2433182
Uniprot:Q8IJA5
Length = 133
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 54 RTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
R + +F +GC NC +FL + R +++CT+ NF+G +A+ P SW+A++ + +
Sbjct: 50 RMLKSESEFYQNGCINC-KFLQLAGDRHRIHDCTTENFNGFMAITTPNKSWMAQYNDLSK 108
>UNIPROTKB|Q8IJA5 [details] [associations]
symbol:PF10_0293 "Transcription factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003682 "chromatin
binding" evidence=ISS] InterPro:IPR009287 PIRSF:PIRSF025023
GO:GO:0005634 GO:GO:0008270 GO:GO:0003682 EMBL:AE014185
GO:GO:0032786 KO:K15171 HOGENOM:HOG000172685 OMA:SWVAKWQ
InterPro:IPR016046 InterPro:IPR022800 PANTHER:PTHR12882
Pfam:PF06093 RefSeq:XP_001347577.1 ProteinModelPortal:Q8IJA5
PRIDE:Q8IJA5 EnsemblProtists:PF10_0293:mRNA GeneID:810450
KEGG:pfa:PF10_0293 EuPathDB:PlasmoDB:PF3D7_1030000
ProtClustDB:CLSZ2433182 Uniprot:Q8IJA5
Length = 133
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 54 RTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
R + +F +GC NC +FL + R +++CT+ NF+G +A+ P SW+A++ + +
Sbjct: 50 RMLKSESEFYQNGCINC-KFLQLAGDRHRIHDCTTENFNGFMAITTPNKSWMAQYNDLSK 108
>SGD|S000003295 [details] [associations]
symbol:SPT4 "Component of the universally conserved Spt4/5
complex (DSIF complex)" species:4932 "Saccharomyces cerevisiae"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=IC] [GO:0032044 "DSIF
complex" evidence=IPI] [GO:0007059 "chromosome segregation"
evidence=IMP] [GO:0000182 "rDNA binding" evidence=IDA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IDA] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0000776 "kinetochore" evidence=IDA] [GO:2000232
"regulation of rRNA processing" evidence=IMP] [GO:2001209 "positive
regulation of transcription elongation from RNA polymerase I
promoter" evidence=IMP] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IGI] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:2001208
"negative regulation of transcription elongation from RNA
polymerase I promoter" evidence=IGI] [GO:0005724 "nuclear telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0001181 "core RNA polymerase I
binding transcription factor activity" evidence=IC] [GO:0006342
"chromatin silencing" evidence=IMP] InterPro:IPR009287
PIRSF:PIRSF025023 SGD:S000003295 GO:GO:0007059 GO:GO:0000775
EMBL:BK006941 GO:GO:0046872 GO:GO:0008270 GO:GO:0006342
GO:GO:0008298 GO:GO:0000398 GO:GO:0006325 GO:GO:0000991
GO:GO:0032968 GO:GO:0006370 GO:GO:2001209 GO:GO:0090262
GO:GO:0000182 EMBL:DQ115391 RefSeq:NP_011585.3 GeneID:852962
KEGG:sce:YGR071C RefSeq:NP_011577.3 GeneID:852955 KEGG:sce:YGR063C
KO:K15171 GO:GO:0001181 GO:GO:2000232 eggNOG:COG5204
HOGENOM:HOG000172685 OMA:SWVAKWQ InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
GeneTree:ENSGT00390000018559 GO:GO:0032044 OrthoDB:EOG4VQDZW
EMBL:M83672 EMBL:AM296426 EMBL:AM296427 EMBL:AM296428 EMBL:AM296429
EMBL:AM296430 EMBL:AM296431 EMBL:AM296432 EMBL:AM296433
EMBL:AM296434 EMBL:AM296435 EMBL:AM296436 EMBL:AM296437
EMBL:AM296438 EMBL:Z72848 EMBL:AY693090 PIR:S31176 PDB:2EXU
PDBsum:2EXU ProteinModelPortal:P32914 SMR:P32914 DIP:DIP-2078N
IntAct:P32914 MINT:MINT-531590 STRING:P32914 PaxDb:P32914
PeptideAtlas:P32914 EnsemblFungi:YGR063C CYGD:YGR063c
EvolutionaryTrace:P32914 NextBio:972717 Genevestigator:P32914
GermOnline:YGR063C GO:GO:2001208 Uniprot:P32914
Length = 102
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 58 TFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKW 108
T ++F DGC NC + + + CTS +F+G++ + P SWVAKW
Sbjct: 15 TTNEFNRDGCPNCQGIF--EEAGVSTMECTSPSFEGLVGMCKPTKSWVAKW 63
>DICTYBASE|DDB_G0285293 [details] [associations]
symbol:spt4 "transcription initiation factor Spt4"
species:44689 "Dictyostelium discoideum" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] dictyBase:DDB_G0285293
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003700 GO:GO:0006357
GO:GO:0003743 EMBL:AAFI02000077 KO:K15171 InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093
RefSeq:XP_638317.1 ProteinModelPortal:Q54NF2 STRING:Q54NF2
EnsemblProtists:DDB0238499 GeneID:8625035 KEGG:ddi:DDB_G0285293
eggNOG:NOG278371 OMA:STTQNFE ProtClustDB:CLSZ2728931 Uniprot:Q54NF2
Length = 91
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 61 QFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRIRR 113
QFE +GC+NC +S + T+ NF+G+IA+M+PK+SW+A+ + R
Sbjct: 33 QFEDNGCENCSS-----SS-----SSTTQNFEGIIAIMNPKESWIARRLQFER 75
>POMBASE|SPBC21C3.16c [details] [associations]
symbol:spt4 "transcription elongation factor complex
subunit Spt4" species:4896 "Schizosaccharomyces pombe" [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=ISO] [GO:0032044 "DSIF complex" evidence=IDA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IGI] InterPro:IPR009287 PIRSF:PIRSF025023
PomBase:SPBC21C3.16c GO:GO:0005829 GO:GO:0000775 EMBL:CU329671
GO:GO:0008270 GO:GO:0006397 GO:GO:0006351 GenomeReviews:CU329671_GR
GO:GO:0006338 GO:GO:0000790 GO:GO:0034244 GO:GO:0032786 KO:K15171
eggNOG:COG5204 HOGENOM:HOG000172685 InterPro:IPR016046
InterPro:IPR022800 PANTHER:PTHR12882 Pfam:PF06093 GO:GO:0032044
PIR:T50360 RefSeq:NP_596596.1 ProteinModelPortal:Q9P7K8
STRING:Q9P7K8 EnsemblFungi:SPBC21C3.16c.1 GeneID:2540700
KEGG:spo:SPBC21C3.16c OMA:MMSSEDS OrthoDB:EOG4VQDZW
NextBio:20801823 Uniprot:Q9P7K8
Length = 105
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 81 DNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
D+V TS F+G++A+M P +SWVA+WQRI
Sbjct: 35 DDVETFTSPVFEGIMAMMSPTESWVARWQRI 65
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.442 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 115 115 0.00091 102 3 11 22 0.49 30
29 0.45 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 596 (63 KB)
Total size of DFA: 152 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.01u 0.07s 15.08t Elapsed: 00:00:03
Total cpu time: 15.01u 0.07s 15.08t Elapsed: 00:00:03
Start: Thu Aug 15 11:47:04 2013 End: Thu Aug 15 11:47:07 2013