RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8226
         (115 letters)



>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit
           E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
          Length = 67

 Score = 57.4 bits (139), Expect = 4e-13
 Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 12/47 (25%)

Query: 65  DGCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWVAKWQRI 111
           D C  C                 S  +  ++ ++D ++S +AK    
Sbjct: 22  DRCPVCGS------------RDLSEEWFDLVIIVDVENSEIAKKIGA 56


>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1207

 Score = 26.0 bits (56), Expect = 1.3
 Identities = 8/40 (20%), Positives = 12/40 (30%)

Query: 47   SAETINPRTTSTFDQFEFDGCDNCDEFLHMKNSRDNVYNC 86
            +A  +  R     D F    C  C     +     N + C
Sbjct: 1126 AASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFEC 1165


>d2bh1x1 d.52.10.1 (X:14-81) General secretion pathway protein E,
          EpsE {Vibrio cholerae [TaxId: 666]}
          Length = 68

 Score = 23.5 bits (51), Expect = 3.8
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 5  DPGLLTLYYRPPPKPSTLA 23
          D    ++YY  P     L 
Sbjct: 21 DFSQASIYYLAPLSMEALV 39


>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase
          carboxyl transferase subunit beta, AccD {Escherichia
          coli [TaxId: 562]}
          Length = 263

 Score = 24.0 bits (51), Expect = 6.1
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 67 CDNCDEFLHMKNSRDNVYNCTSSNF 91
          CD+C + L+      N+  C   + 
Sbjct: 5  CDSCGQVLYRAELERNLEVCPKCDH 29


>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
           Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 23.1 bits (49), Expect = 6.3
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 8/40 (20%)

Query: 66  GCDNCDEFLHMKNSRDNVYNCTSSNFDGMIALMDPKDSWV 105
            CD C+E+ H          C   +      L    + ++
Sbjct: 32  CCDRCEEWFHGD--------CVGISEARGRLLERNGEDYI 63


>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
           TCTP (histamine-releasing factor) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 172

 Score = 23.5 bits (51), Expect = 6.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 88  SSNFDGMIALMDPKD 102
           + N DGM+AL+D ++
Sbjct: 139 NMNPDGMVALLDYRE 153


>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7
          {Escherichia coli [TaxId: 562]}
          Length = 124

 Score = 23.1 bits (50), Expect = 8.5
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 42 PIPSASAETINPRTTSTFDQF 62
          P+P   A  +  +   +FD F
Sbjct: 27 PVPDRIANKLRDKEFKSFDDF 47


>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia
          coli [TaxId: 562]}
          Length = 130

 Score = 22.8 bits (49), Expect = 9.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 42 PIPSASAETINPRTTSTFDQF 62
          PIP   A+ +  +   +FD F
Sbjct: 30 PIPDRIADKLRDKEFKSFDDF 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 480,632
Number of extensions: 20060
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 17
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)