BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8227
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9TVQ5|SPT4H_DROME Transcription elongation factor SPT4 OS=Drosophila melanogaster
GN=spt4 PE=1 SV=1
Length = 116
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
F+ + K R RACL CS +K+FDQFE DGC+NC+EFL MKN++DNVY+ TS+NFD
Sbjct: 3 FDAIPKDLRGLRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFD 58
>sp|Q5RFH5|SPT4H_PONAB Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1
PE=3 SV=1
Length = 117
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNCD +L MK +R+ VY+CTSS+FD
Sbjct: 3 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 58
>sp|Q5HZ97|SPT4H_XENLA Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1
PE=3 SV=1
Length = 117
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNCD +L MK +R+ VY+CTSS+FD
Sbjct: 3 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 58
>sp|Q4R941|SPT4H_MACFA Transcription elongation factor SPT4 OS=Macaca fascicularis
GN=SUPT4H1 PE=3 SV=1
Length = 117
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNCD +L MK +R+ VY+CTSS+FD
Sbjct: 3 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 58
>sp|P63272|SPT4H_HUMAN Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1
PE=1 SV=1
Length = 117
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNCD +L MK +R+ VY+CTSS+FD
Sbjct: 3 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 58
>sp|Q3SYX6|SPT4H_BOVIN Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3
SV=1
Length = 117
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNCD +L MK +R+ VY+CTSS+FD
Sbjct: 3 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 58
>sp|P63271|SPT41_MOUSE Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1
PE=2 SV=1
Length = 117
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNCD +L MK +R+ VY+CTSS+FD
Sbjct: 3 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 58
>sp|Q9Z199|SPT42_MOUSE Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2
PE=2 SV=1
Length = 117
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNCD +L MK +R+ VY+CTSS+FD
Sbjct: 3 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 58
>sp|Q6DGQ0|SPT4H_DANRE Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3
SV=1
Length = 117
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNC+ +L MK +R+ VY CTSS+FD
Sbjct: 3 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFD 58
>sp|Q628A6|SPT4H_CAEBR Transcription elongation factor SPT4 OS=Caenorhabditis briggsae
GN=spt-4 PE=3 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 77 FRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
R RACL CS IK+ D F+ DGC+NCDE LH+K + VY+CTS+N+D
Sbjct: 9 LRNLRACLLCSLIKSVDAFQTDGCENCDEVLHLKGDEEKVYDCTSANYD 57
>sp|Q9TZ93|SPT4H_CAEEL Transcription elongation factor SPT4 OS=Caenorhabditis elegans
GN=spt-4 PE=3 SV=1
Length = 120
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 77 FRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
R RACL CS +K+ + F+ +GC+NC++ LH+K + VY+CTS+N+D
Sbjct: 9 LRNLRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYD 57
>sp|Q4I5W5|SPT4_GIBZE Transcription elongation factor SPT4 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT4
PE=3 SV=2
Length = 123
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 78 RQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
R RAC+ CS + T +F+ +GC NC+EFLH+++S D + +CTS F+
Sbjct: 13 RNLRACMICSIVMTSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFE 60
>sp|Q7S743|SPT4_NEUCR Transcription elongation factor spt-4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=spt-4 PE=3 SV=1
Length = 120
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 78 RQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
R RAC+ CS + T+ +F +GC NC++FLH++ S D + +CTS F+
Sbjct: 12 RYLRACMVCSIVMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFE 59
>sp|Q4WU00|SPT4_ASPFU Transcription elongation factor spt4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=spt4 PE=3 SV=1
Length = 156
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 78 RQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
R RAC+ CS ++ +F DGC NCD L ++ + D + CTS F+
Sbjct: 13 RTLRACMVCSLVQLHSKFMRDGCPNCDNVLGLRGNNDAIQECTSQVFE 60
>sp|P0CR68|SPT4_CRYNJ Transcription elongation factor SPT4 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT4 PE=3 SV=1
Length = 113
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 79 QARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ RACL CS +++ + F GC NC++ L M+ S + V CTS +D
Sbjct: 9 ELRACLVCSILQSTNDFLTQGCPNCEDILEMRGSAERVAECTSLLYD 55
>sp|P0CR69|SPT4_CRYNB Transcription elongation factor SPT4 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=SPT4 PE=3
SV=1
Length = 113
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 79 QARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ RACL CS +++ + F GC NC++ L M+ S + V CTS +D
Sbjct: 9 ELRACLVCSILQSTNDFLTQGCPNCEDILEMRGSAERVAECTSLLYD 55
>sp|Q94C60|SPT42_ARATH Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis
thaliana GN=At5g63670 PE=2 SV=1
Length = 116
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 79 QARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ RACL C +KT+DQF GC+NC F M+ + + T+ NF+
Sbjct: 15 ELRACLRCRLVKTYDQFRDAGCENCP-FFKMEEDHERIVEVTTPNFN 60
>sp|Q8LCQ3|SPT41_ARATH Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis
thaliana GN=At5g08565 PE=2 SV=3
Length = 116
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 79 QARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ RACL C +KT+DQF GC+NC F +++ + + + T+ NF+
Sbjct: 15 ELRACLRCRLVKTYDQFRDSGCENCP-FFKIEDDHERIVDVTTPNFN 60
>sp|Q6BHA5|SPT4_DEBHA Transcription elongation factor SPT4 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SPT4 PE=3 SV=2
Length = 111
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 78 RQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDN-VYNCTSSNFD 125
R RAC+ C I+ F +F GC NC+ LH +++ DN V +CTS +F+
Sbjct: 4 RSERACMLCGIIQPFRKFVDFGCPNCESVLHFQDNEDNQVQDCTSPSFE 52
>sp|Q5AK73|SPT4_CANAL Transcription elongation factor SPT4 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPT4 PE=3 SV=1
Length = 112
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 78 RQARACLGCSQIKTFDQFEFDGCDNCDEFLHMK-NSRDNVYNCTSSNFD 125
R RAC+ C I+ F GC NC+ LH + N V +CTS +F+
Sbjct: 4 RSERACMLCGIIQPMKSFIDYGCPNCESLLHYQYNDNKQVQDCTSPSFE 52
>sp|Q752J8|SPT4_ASHGO Transcription elongation factor SPT4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SPT4 PE=3 SV=1
Length = 102
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 81 RACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
RAC+ C ++T ++F DGC NC + + + CTS +F+
Sbjct: 5 RACMLCGIVQTTNEFTRDGCPNCQGIF--EEASVSAIECTSPSFE 47
>sp|P32914|SPT4_YEAST Transcription elongation factor SPT4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPT4 PE=1 SV=1
Length = 102
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 81 RACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
RAC+ C ++T ++F DGC NC + + + CTS +F+
Sbjct: 5 RACMLCGIVQTTNEFNRDGCPNCQGIF--EEAGVSTMECTSPSFE 47
>sp|Q2T9S6|RHCG_BOVIN Ammonium transporter Rh type C OS=Bos taurus GN=RHCG PE=2 SV=2
Length = 460
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 11 WAYVRSHVHVQVGRMPESLAAKFTQHVGILCYCLWFLWTLVHSATMVHGTSNNNAKIDDF 70
W R ++H+ R + + +G L LW W +SA HG + + A I+ +
Sbjct: 198 WILYRPNLHLSKERQSSTYHSDLFAMIGTLF--LWMYWPSFNSAISNHGDAQHRAAINTY 255
Query: 71 NNLA 74
+LA
Sbjct: 256 CSLA 259
>sp|Q6FMX1|SPT4_CANGA Transcription elongation factor SPT4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPT4 PE=3 SV=1
Length = 102
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 81 RACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
RAC+ C ++T ++F GC NC + + + CTS +F+
Sbjct: 5 RACMLCGIVQTTNEFGRVGCPNCQGIF--EEAGVSTMECTSPSFE 47
>sp|P81205|SPT4_KLULA Transcription elongation factor SPT4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SPT4 PE=3 SV=1
Length = 102
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 81 RACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
RAC+ C +++ +F +GC NC + + + CTS +F+
Sbjct: 5 RACMLCGLVQSTAEFNRNGCPNCQSIF--EEAGVSAVECTSPSFE 47
>sp|A1BI17|ACCD_CHLPD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Chlorobium phaeobacteroides (strain DSM 266) GN=accD
PE=3 SV=1
Length = 279
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 76 YFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNF 124
+F++A+ + + + + + CD C LH K DN Y C+ +
Sbjct: 3 WFKRAKPAIRTTDRRDMPEGMWWKCDECGAMLHKKQLEDNFYTCSECGY 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.135 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,214,718
Number of Sequences: 539616
Number of extensions: 1624980
Number of successful extensions: 4266
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4243
Number of HSP's gapped (non-prelim): 27
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)