Query psy8227
Match_columns 125
No_of_seqs 112 out of 148
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 21:56:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7h_A Transcription elongatio 99.9 1.8E-24 6.1E-29 159.8 1.0 58 68-125 4-61 (120)
2 2exu_A Transcription initiatio 99.7 1.1E-19 3.8E-24 142.1 0.8 47 77-125 1-47 (200)
3 3lpe_B DNA-directed RNA polyme 98.8 7.9E-10 2.7E-14 72.9 -0.0 28 80-125 1-28 (59)
4 3p8b_A DNA-directed RNA polyme 98.2 2.7E-07 9.1E-12 64.7 0.3 38 71-125 13-51 (81)
5 1ryq_A DNA-directed RNA polyme 97.8 3.8E-06 1.3E-10 57.1 0.3 30 79-125 10-39 (69)
6 3na7_A HP0958; flagellar bioge 84.0 0.32 1.1E-05 37.4 1.1 30 81-110 199-235 (256)
7 1v32_A AT5G08430, hypothetical 54.9 7.3 0.00025 27.2 2.4 17 2-18 35-52 (101)
8 4ayb_P DNA-directed RNA polyme 43.1 6.8 0.00023 25.0 0.6 24 81-104 4-30 (48)
9 1uhr_A SWI/SNF related, matrix 42.2 11 0.00039 25.4 1.7 16 3-18 28-44 (93)
10 1v31_A Hypothetical protein RA 42.0 11 0.00039 25.3 1.7 16 3-18 28-44 (93)
11 2fiy_A Protein FDHE homolog; F 41.3 5.2 0.00018 32.5 -0.2 21 82-105 210-230 (309)
12 1q2h_A APS, adaptor protein wi 30.6 45 0.0015 22.3 3.1 34 3-36 19-52 (69)
13 1nho_A Probable thioredoxin; b 26.3 16 0.00054 21.0 0.2 17 91-107 4-20 (85)
14 1fo5_A Thioredoxin; disulfide 25.6 15 0.00052 21.1 0.1 16 92-107 6-21 (85)
15 2k8s_A Thioredoxin; dimer, str 24.8 8.3 0.00028 23.1 -1.3 17 92-108 4-20 (80)
16 3a43_A HYPD, hydrogenase nicke 23.7 28 0.00096 24.8 1.2 44 58-106 53-116 (139)
17 2fwt_A DHC, diheme cytochrome 23.0 46 0.0016 23.9 2.2 18 2-19 47-64 (125)
18 4hn5_A Glucocorticoid receptor 22.2 18 0.00061 25.8 -0.1 31 78-108 27-57 (117)
19 1ego_A Glutaredoxin; electron 22.1 18 0.0006 21.2 -0.1 14 94-107 5-18 (85)
20 1dxs_A P53-like transcription 21.9 31 0.0011 23.9 1.1 20 92-111 9-29 (80)
21 3qt1_I DNA-directed RNA polyme 21.8 28 0.00095 25.1 0.9 29 76-104 20-53 (133)
22 3gox_A Restriction endonucleas 21.1 22 0.00074 28.2 0.2 30 78-107 73-114 (200)
23 2yj7_A LPBCA thioredoxin; oxid 26.2 21 0.00071 20.9 0.0 14 94-107 25-38 (106)
24 1yk4_A Rubredoxin, RD; electro 20.6 35 0.0012 21.1 1.0 10 83-92 5-14 (52)
25 1ilo_A Conserved hypothetical 20.5 24 0.00082 20.0 0.2 14 94-107 5-18 (77)
No 1
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=99.88 E-value=1.8e-24 Score=159.75 Aligned_cols=58 Identities=57% Similarity=1.101 Sum_probs=55.5
Q ss_pred ccccccccccccccccccCCcccchhhhhhcCCCChhhhhhccCCcccccccccCCCC
Q psy8227 68 DDFNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125 (125)
Q Consensus 68 ~s~~~VP~~~R~LRACLlCsLVKT~dQF~~dGCpNCe~~L~Mkgn~drV~dCTS~nFd 125 (125)
+++.+||+++|+||||+.|++|+|.+||+++|||||++||+|+||+|+|++|||++|+
T Consensus 4 m~~~~iP~~~r~lrAC~~C~~V~t~~qF~~~gCpnC~~~l~m~~~~d~v~~ctT~~f~ 61 (120)
T 3h7h_A 4 GALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 61 (120)
T ss_dssp CCGGGSCSSSTTEEEETTTCBEEEHHHHHHHCCTTTHHHHCCTTCHHHHHHHEESCEE
T ss_pred cccccCCCccccCeeeccCCceechhhccCCCCCCCcchhhccCCcccccccccCCcc
Confidence 4567999999999999999999999999999999999999999999999999999995
No 2
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-19 Score=142.14 Aligned_cols=47 Identities=32% Similarity=0.785 Sum_probs=44.0
Q ss_pred cccccccccCCcccchhhhhhcCCCChhhhhhccCCcccccccccCCCC
Q psy8227 77 FRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125 (125)
Q Consensus 77 ~R~LRACLlCsLVKT~dQF~~dGCpNCe~~L~Mkgn~drV~dCTS~nFd 125 (125)
.|+||||+.|++|||.+||+.+|||||++|| +||+++|+||||++|+
T Consensus 1 ~~~lrAC~~C~~i~t~~qf~~~gCpnC~~~l--~g~~~~v~~cts~~f~ 47 (200)
T 2exu_A 1 MSSERACMLCGIVQTTNEFNRDGCPNCQGIF--EEAGVSTMECTSPSFE 47 (200)
T ss_dssp --CEEEETTTCBEEEHHHHHHHCCTTTHHHH--HHHTCCSGGGEESCEE
T ss_pred CCcceecccCCceechhHhccCCCCCCcccc--CCCcceeeecccCCee
Confidence 3789999999999999999999999999999 9999999999999995
No 3
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=98.77 E-value=7.9e-10 Score=72.94 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=24.4
Q ss_pred ccccccCCcccchhhhhhcCCCChhhhhhccCCcccccccccCCCC
Q psy8227 80 ARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125 (125)
Q Consensus 80 LRACLlCsLVKT~dQF~~dGCpNCe~~L~Mkgn~drV~dCTS~nFd 125 (125)
||||+.|++|+|.+ |||||++ |||++|+
T Consensus 1 lrAC~~C~~v~~~~-----~CpnC~~-------------~tt~~~~ 28 (59)
T 3lpe_B 1 MRACLKCKYLTNDE-----ICPICHS-------------PTSENWI 28 (59)
T ss_dssp CEEETTTCBEESSS-----BCTTTCC-------------BEESCEE
T ss_pred CcccccCCcccCCC-----CCCCCCC-------------CccCCEe
Confidence 79999999999887 8999983 6888874
No 4
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=98.17 E-value=2.7e-07 Score=64.67 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=24.5
Q ss_pred cccc-cccccccccccCCcccchhhhhhcCCCChhhhhhccCCcccccccccCCCC
Q psy8227 71 NNLA-KYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125 (125)
Q Consensus 71 ~~VP-~~~R~LRACLlCsLVKT~dQF~~dGCpNCe~~L~Mkgn~drV~dCTS~nFd 125 (125)
--|| .+...+|||+.|++|++.+ |||||.. ++||++|+
T Consensus 13 ~~~~~~~~m~~rAC~~C~~v~~~d-----~CPnCgs------------~~~T~~w~ 51 (81)
T 3p8b_A 13 GLVPRGSHMSEKACRHCHYITSED-----RCPVCGS------------RDLSEEWF 51 (81)
T ss_dssp ---------CCEEETTTCBEESSS-----SCTTTCC------------CCEESCEE
T ss_pred ccccCCcchhHHHHhhCCCccCCC-----CCCCCCC------------CccCCccc
Confidence 3466 3456799999999999764 7999974 45777764
No 5
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=97.77 E-value=3.8e-06 Score=57.14 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=24.4
Q ss_pred cccccccCCcccchhhhhhcCCCChhhhhhccCCcccccccccCCCC
Q psy8227 79 QARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125 (125)
Q Consensus 79 ~LRACLlCsLVKT~dQF~~dGCpNCe~~L~Mkgn~drV~dCTS~nFd 125 (125)
..+||..|..|. ..+|||||+. +|||++|+
T Consensus 10 ~~~AC~~C~~~~-----~~~~CPnC~s------------~~tS~~w~ 39 (69)
T 1ryq_A 10 SEKACRHCHYIT-----SEDRCPVCGS------------RDLSEEWF 39 (69)
T ss_dssp -CEEETTTCBEE-----SSSSCTTTCC------------CCEESCEE
T ss_pred hhhhHHhCCccc-----cCCcCCCccC------------CccCCccc
Confidence 468999999987 7889999983 47888874
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.05 E-value=0.32 Score=37.37 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=24.2
Q ss_pred cccccCCcccchhhhhh----c---CCCChhhhhhcc
Q psy8227 81 RACLGCSQIKTFDQFEF----D---GCDNCDEFLHMK 110 (125)
Q Consensus 81 RACLlCsLVKT~dQF~~----d---GCpNCe~~L~Mk 110 (125)
++|.+|.+..++..+.. + -||||..+|=..
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence 69999999999988854 2 399999988443
No 7
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=54.94 E-value=7.3 Score=27.17 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=12.9
Q ss_pred cchHH-HHHHHHHHHhhh
Q psy8227 2 IARDE-VAQLWAYVRSHV 18 (125)
Q Consensus 2 ~~~~~-~~~~~~~~~~~~ 18 (125)
+.|-| |..||+|++.|-
T Consensus 35 ~sR~eVvk~lW~YIK~nn 52 (101)
T 1v32_A 35 ISRYDVSDTIAKYISKEG 52 (101)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhhc
Confidence 34555 678999999884
No 8
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=43.14 E-value=6.8 Score=25.04 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=18.6
Q ss_pred cccccCCcccchhhhhh---cCCCChh
Q psy8227 81 RACLGCSQIKTFDQFEF---DGCDNCD 104 (125)
Q Consensus 81 RACLlCsLVKT~dQF~~---dGCpNCe 104 (125)
-.|+.|+-.-|.+|.+. --||+|.
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCG 30 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCG 30 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccC
Confidence 36999998888888755 3599996
No 9
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=42.17 E-value=11 Score=25.42 Aligned_cols=16 Identities=31% Similarity=0.891 Sum_probs=12.3
Q ss_pred chHH-HHHHHHHHHhhh
Q psy8227 3 ARDE-VAQLWAYVRSHV 18 (125)
Q Consensus 3 ~~~~-~~~~~~~~~~~~ 18 (125)
.|.| +..||+|++.|-
T Consensus 28 sr~evvk~lW~YIK~n~ 44 (93)
T 1uhr_A 28 TRPVIIQALWQYIKTHK 44 (93)
T ss_dssp EHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 4555 678999999884
No 10
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=42.00 E-value=11 Score=25.33 Aligned_cols=16 Identities=31% Similarity=0.841 Sum_probs=12.2
Q ss_pred chHH-HHHHHHHHHhhh
Q psy8227 3 ARDE-VAQLWAYVRSHV 18 (125)
Q Consensus 3 ~~~~-~~~~~~~~~~~~ 18 (125)
.|.| +..||+|++.|=
T Consensus 28 sr~evvk~lW~YIK~n~ 44 (93)
T 1v31_A 28 TRPRIIAAIWHYVKARK 44 (93)
T ss_dssp CSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcc
Confidence 3445 688999999884
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.29 E-value=5.2 Score=32.47 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=15.2
Q ss_pred ccccCCcccchhhhhhcCCCChhh
Q psy8227 82 ACLGCSQIKTFDQFEFDGCDNCDE 105 (125)
Q Consensus 82 ACLlCsLVKT~dQF~~dGCpNCe~ 105 (125)
-|..|+ |.=.|.+-+||||++
T Consensus 210 ~Cs~C~---t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 210 SCSLCA---CEWHYVRIKCSHCEE 230 (309)
T ss_dssp EETTTC---CEEECCTTSCSSSCC
T ss_pred EeCCCC---CEEeecCcCCcCCCC
Confidence 456665 555677789999985
No 12
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=30.58 E-value=45 Score=22.33 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHhhheeeecCcchHHHHHHHHH
Q psy8227 3 ARDEVAQLWAYVRSHVHVQVGRMPESLAAKFTQH 36 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (125)
|+|=-.+-|.|+++|-+.--..--.+...||++.
T Consensus 19 A~DfA~~~~~f~~~nP~~~~~~s~~~Fs~~F~~~ 52 (69)
T 1q2h_A 19 AVDFAHKFCRFLRDNPAYDTPDAGASFSRHFAAN 52 (69)
T ss_dssp HHHHHHHHHHHHHHCGGGCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCcccHHHHHHHHHHH
Confidence 4555667899999997663122122355666654
No 13
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=26.32 E-value=16 Score=20.98 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=12.7
Q ss_pred chhhhhhcCCCChhhhh
Q psy8227 91 TFDQFEFDGCDNCDEFL 107 (125)
Q Consensus 91 T~dQF~~dGCpNCe~~L 107 (125)
+.-.|...+||.|..+.
T Consensus 4 ~vv~f~~~~C~~C~~~~ 20 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAI 20 (85)
T ss_dssp CEEEESCSSSCCSTTHH
T ss_pred EEEEEECCCCcchHHHH
Confidence 34457889999998654
No 14
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=25.57 E-value=15 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.0
Q ss_pred hhhhhhcCCCChhhhh
Q psy8227 92 FDQFEFDGCDNCDEFL 107 (125)
Q Consensus 92 ~dQF~~dGCpNCe~~L 107 (125)
.-.|...+||.|..+.
T Consensus 6 vv~f~~~~C~~C~~~~ 21 (85)
T 1fo5_A 6 IELFTSPMCPHCPAAK 21 (85)
T ss_dssp EEEEECCCSSCCCTHH
T ss_pred EEEEeCCCCCchHHHH
Confidence 3457889999997654
No 15
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=24.76 E-value=8.3 Score=23.08 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=12.7
Q ss_pred hhhhhhcCCCChhhhhh
Q psy8227 92 FDQFEFDGCDNCDEFLH 108 (125)
Q Consensus 92 ~dQF~~dGCpNCe~~L~ 108 (125)
..-|...|||.|.....
T Consensus 4 ~~~f~~~~C~~C~~~~~ 20 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQ 20 (80)
T ss_dssp EEEEEECSCHHHHHHHH
T ss_pred eEEEeCCCCCchHHHHH
Confidence 34577889999987655
No 16
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=23.74 E-value=28 Score=24.80 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=28.8
Q ss_pred hcccCCccccccccccccccccccccccCCcccchhh-----------hh---------hcCCCChhhh
Q psy8227 58 HGTSNNNAKIDDFNNLAKYFRQARACLGCSQIKTFDQ-----------FE---------FDGCDNCDEF 106 (125)
Q Consensus 58 h~~s~~~~~~~s~~~VP~~~R~LRACLlCsLVKT~dQ-----------F~---------~dGCpNCe~~ 106 (125)
-|+-.++++..-- .+|... -|..|+..-+.++ .. ..-||.|.+.
T Consensus 53 ~gt~~e~A~L~i~-~~p~~~----~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 53 AGTIAEGAEIEFV-EEEAVF----KCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp TTSTTTTCEEEEE-EECCEE----EETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred cCCcccCCEEEEE-ecCCcE----ECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 4665566554433 445443 4999998877777 42 5679999854
No 17
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=23.03 E-value=46 Score=23.93 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHHhhhe
Q psy8227 2 IARDEVAQLWAYVRSHVH 19 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (125)
+..++.+.+|+|++.|--
T Consensus 47 Ld~~~~~~I~~YLq~~A~ 64 (125)
T 2fwt_A 47 LDEASRGQIESYLVANAA 64 (125)
T ss_dssp CCHHHHHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 457899999999999875
No 18
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=22.15 E-value=18 Score=25.79 Aligned_cols=31 Identities=23% Similarity=0.544 Sum_probs=20.1
Q ss_pred ccccccccCCcccchhhhhhcCCCChhhhhh
Q psy8227 78 RQARACLGCSQIKTFDQFEFDGCDNCDEFLH 108 (125)
Q Consensus 78 R~LRACLlCsLVKT~dQF~~dGCpNCe~~L~ 108 (125)
....-|.+|+-.-+---|--.-|+.|..|+.
T Consensus 27 ~~~~~C~VCgd~a~G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 27 APPKLCLVCSDEASGCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ---CBCTTTCSBCCEEETTEEECHHHHHHHH
T ss_pred CCCCcCCcCCCcCcccccCCcccchhhhhhh
Confidence 4456799999554444444456999998885
No 19
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=22.08 E-value=18 Score=21.22 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=10.6
Q ss_pred hhhhcCCCChhhhh
Q psy8227 94 QFEFDGCDNCDEFL 107 (125)
Q Consensus 94 QF~~dGCpNCe~~L 107 (125)
-|...+||.|....
T Consensus 5 ~f~~~~C~~C~~~~ 18 (85)
T 1ego_A 5 IFGRSGCPYCVRAK 18 (85)
T ss_dssp EECCTTSTHHHHHH
T ss_pred EEeCCCCCCHHHHH
Confidence 46678999998654
No 20
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=21.88 E-value=31 Score=23.86 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=14.0
Q ss_pred hhhhhh-cCCCChhhhhhccC
Q psy8227 92 FDQFEF-DGCDNCDEFLHMKN 111 (125)
Q Consensus 92 ~dQF~~-dGCpNCe~~L~Mkg 111 (125)
...|-. -|||||-++++-+|
T Consensus 9 v~s~Lt~LGc~~~Id~F~~qg 29 (80)
T 1dxs_A 9 LVSFLTGLGCPNCIEYFTSQG 29 (80)
T ss_dssp HHHHHHHTTCTTSHHHHHTTT
T ss_pred HHHHHHhcCchHHHHHHHHcC
Confidence 334544 69999998876665
No 21
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=21.83 E-value=28 Score=25.12 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=18.2
Q ss_pred ccccccccccCCcccchhhhh-----hcCCCChh
Q psy8227 76 YFRQARACLGCSQIKTFDQFE-----FDGCDNCD 104 (125)
Q Consensus 76 ~~R~LRACLlCsLVKT~dQF~-----~dGCpNCe 104 (125)
++-.++-|..|+=++.++.=. .--|++|+
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCg 53 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCS 53 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCC
Confidence 345688899998777665311 12388887
No 22
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=21.09 E-value=22 Score=28.22 Aligned_cols=30 Identities=30% Similarity=0.721 Sum_probs=24.9
Q ss_pred ccccccccCCcccchhhhhh-----cC-------CCChhhhh
Q psy8227 78 RQARACLGCSQIKTFDQFEF-----DG-------CDNCDEFL 107 (125)
Q Consensus 78 R~LRACLlCsLVKT~dQF~~-----dG-------CpNCe~~L 107 (125)
-..|-|..|+.+|+.++|.. +| |.-|...+
T Consensus 73 ~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l 114 (200)
T 3gox_A 73 YDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI 114 (200)
T ss_dssp SSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH
T ss_pred CCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc
Confidence 46799999999999999976 58 88886543
No 23
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=26.15 E-value=21 Score=20.88 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=11.1
Q ss_pred hhhhcCCCChhhhh
Q psy8227 94 QFEFDGCDNCDEFL 107 (125)
Q Consensus 94 QF~~dGCpNCe~~L 107 (125)
.|...+||.|..+.
T Consensus 25 ~f~~~~C~~C~~~~ 38 (106)
T 2yj7_A 25 DFWAPWCGPCRMIA 38 (106)
Confidence 47778999998654
No 24
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.57 E-value=35 Score=21.08 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=5.4
Q ss_pred cccCCcccch
Q psy8227 83 CLGCSQIKTF 92 (125)
Q Consensus 83 CLlCsLVKT~ 92 (125)
|.+|+.|-..
T Consensus 5 C~~CGyvYd~ 14 (52)
T 1yk4_A 5 CKICGYIYDE 14 (52)
T ss_dssp ESSSSCEEET
T ss_pred eCCCCeEECC
Confidence 5556655443
No 25
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=20.50 E-value=24 Score=20.03 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=10.3
Q ss_pred hhhhcCCCChhhhh
Q psy8227 94 QFEFDGCDNCDEFL 107 (125)
Q Consensus 94 QF~~dGCpNCe~~L 107 (125)
.|...+||.|..+.
T Consensus 5 ~f~a~wC~~C~~~~ 18 (77)
T 1ilo_A 5 QIYGTGCANCQMLE 18 (77)
T ss_dssp EEECSSSSTTHHHH
T ss_pred EEEcCCChhHHHHH
Confidence 35567999998654
Done!