RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8227
(125 letters)
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta
sheet, activator, ME binding, nucleus, repressor,
transcription regulation; 1.55A {Homo sapiens}
Length = 120
Score = 81.2 bits (200), Expect = 3e-21
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 70 FNNLAKYFRQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
+ K R RACL CS +KT DQFE+DGCDNCD +L MK +R+ VY+CTSS+FD
Sbjct: 6 LETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFD 61
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta
sheet; 2.23A {Saccharomyces cerevisiae}
Length = 200
Score = 70.5 bits (172), Expect = 2e-16
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 78 RQARACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
RAC+ C ++T ++F DGC NC + CTS +F+
Sbjct: 2 SSERACMLCGIVQTTNEFNRDGCPNCQGIFEEA--GVSTMECTSPSFE 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 20/79 (25%)
Query: 26 PESLAAKFTQHVG-------------ILCYCLW-----FLWTL-VHSATMVHGTSNNNAK 66
P L KF +V +L CL +L +H+ N+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA-AKLLQENDTT 115
Query: 67 IDDFNNLAKYFRQARACLG 85
+ L K + AR
Sbjct: 116 LVKTKELIKNYITARIMAK 134
Score = 27.3 bits (60), Expect = 1.5
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 20/83 (24%)
Query: 15 RSHVHVQVGRMPESLAAKFTQHVGILCYCLWFLWTLVHSATM--VHGTSNNNAKIDDFNN 72
+ V V + L A + V I +LV+ A V G
Sbjct: 346 QEQVQDYVNKTNSHLPA--GKQVEI---------SLVNGAKNLVVSGPP------QSLYG 388
Query: 73 LAKYFRQARACLGCSQIKT-FDQ 94
L R+A+A G Q + F +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSE 411
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine
protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3,
ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A*
1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Length = 328
Score = 32.7 bits (75), Expect = 0.020
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 23/72 (31%)
Query: 9 QLWAYVRSHVHVQVGRMPESLA-AKFTQHVGILCYCLWFLWTLVHSATMVHG-------- 59
+++ Y+ +H GRM E A +KF Q V + YC H +VH
Sbjct: 100 EVFDYLVAH-----GRMKEKEARSKFRQIVSAVQYC--------HQKRIVHRDLKAENLL 146
Query: 60 -TSNNNAKIDDF 70
++ N KI DF
Sbjct: 147 LDADMNIKIADF 158
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
selectivity residues, POLO-like K structure based drug
design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
3db6_A* 3dbe_A* 3dbf_A*
Length = 294
Score = 31.0 bits (71), Expect = 0.060
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 18/64 (28%)
Query: 17 HVHVQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAK 66
+H + + E A Q V Y H ++H + K
Sbjct: 104 ELHKRRKALTEPEARYYLRQIVLGCQYL--------HRNRVIHRDLKLGNLFLNEDLEVK 155
Query: 67 IDDF 70
I DF
Sbjct: 156 IGDF 159
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2;
ATP-binding, cholesterol biosynthesis, fatty acid
biosynthesis;kinase, lipid synthesis; 1.85A {Homo
sapiens} PDB: 3aqv_A* 2yza_A*
Length = 276
Score = 30.6 bits (70), Expect = 0.086
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 18/61 (29%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
+ GR+ E A + F Q + + YC H +VH ++ NAKI D
Sbjct: 103 CKHGRVEEMEARRLFQQILSAVDYC--------HRHMVVHRDLKPENVLLDAHMNAKIAD 154
Query: 70 F 70
F
Sbjct: 155 F 155
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 30.9 bits (70), Expect = 0.091
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 18/61 (29%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
+ GR+ E + + F Q + + YC H +VH ++ NAKI D
Sbjct: 108 CKNGRLDEKESRRLFQQILSGVDYC--------HRHMVVHRDLKPENVLLDAHMNAKIAD 159
Query: 70 F 70
F
Sbjct: 160 F 160
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A
{Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A
2fh9_A 3mn3_A
Length = 275
Score = 30.6 bits (70), Expect = 0.10
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 18/61 (29%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
VQ +M E A + F Q + + YC H +VH + N KI D
Sbjct: 104 VQRDKMSEQEARRFFQQIISAVEYC--------HRHKIVHRDLKPENLLLDEHLNVKIAD 155
Query: 70 F 70
F
Sbjct: 156 F 156
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 29.9 bits (68), Expect = 0.16
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 18/61 (29%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
V+ RM E + F Q + + YC H +VH N N KI D
Sbjct: 100 VEKKRMTEDEGRRFFQQIICAIEYC--------HRHKIVHRDLKPENLLLDDNLNVKIAD 151
Query: 70 F 70
F
Sbjct: 152 F 152
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding
protein complex, transferase metal protein complex,
nucleus; HET: ANP; 2.65A {Homo sapiens}
Length = 305
Score = 29.5 bits (67), Expect = 0.21
Identities = 16/73 (21%), Positives = 19/73 (26%), Gaps = 20/73 (27%)
Query: 19 HVQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKID 68
V R P A F Q + L Y HS +VH T+ KI
Sbjct: 100 SVPEKRFPVCQAHGYFCQLIDGLEYL--------HSQGIVHKDIKPGNLLLTTGGTLKIS 151
Query: 69 DF--NNLAKYFRQ 79
F
Sbjct: 152 ALGVAEALHPFAA 164
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling,
transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A
3zuu_A 3uc4_A 3ujg_A 3udb_A
Length = 361
Score = 29.6 bits (67), Expect = 0.22
Identities = 18/74 (24%), Positives = 22/74 (29%), Gaps = 25/74 (33%)
Query: 20 VQVGRMPESLAAKFTQHVGILC---YCLWFLWTLVHSATMVH-----------GTSNNNA 65
GR E A F Q +L YC HS + H G+
Sbjct: 108 CNAGRFSEDEARFFFQQ--LLSGVSYC--------HSMQICHRDLKLENTLLDGSPAPRL 157
Query: 66 KIDDFNNLAKYFRQ 79
KI DF +K
Sbjct: 158 KICDF-GYSKSSVL 170
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET:
YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A*
2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A*
2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A*
2x8i_A* 2xey_A* 2xez_A* ...
Length = 276
Score = 29.5 bits (67), Expect = 0.23
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 19/72 (26%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
MPE A + F Q + + Y H + H +N KI D
Sbjct: 97 EPDIGMPEPDAQRFFHQLMAGVVYL--------HGIGITHRDIKPENLLLDERDNLKISD 148
Query: 70 FNNLAKYFRQAR 81
F LA FR
Sbjct: 149 F-GLATVFRYNN 159
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK,
STK18, PSI, structural genomics, protein structure
initiative; HET: ANP; 2.25A {Homo sapiens}
Length = 278
Score = 29.4 bits (67), Expect = 0.25
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 17 HVHVQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAK 66
++ +V E+ A Q + + Y HS ++H T N N K
Sbjct: 101 YLKNRVKPFSENEARHFMHQIITGMLYL--------HSHGILHRDLTLSNLLLTRNMNIK 152
Query: 67 IDDF 70
I DF
Sbjct: 153 IADF 156
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 29.6 bits (67), Expect = 0.25
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 19/72 (26%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
MPE A + F Q + + Y H + H +N KI D
Sbjct: 97 EPDIGMPEPDAQRFFHQLMAGVVYL--------HGIGITHRDIKPENLLLDERDNLKISD 148
Query: 70 FNNLAKYFRQAR 81
F LA FR
Sbjct: 149 F-GLATVFRYNN 159
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 29.2 bits (66), Expect = 0.29
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
+ + E A F + + Y H ++H + + KI D
Sbjct: 129 PTLKPLSEDQARFYFQDLIKGIEYL--------HYQKIIHRDIKPSNLLVGEDGHIKIAD 180
Query: 70 F 70
F
Sbjct: 181 F 181
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 27.6 bits (62), Expect = 0.93
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
+ GR E +A + L YC H ++H KI D
Sbjct: 106 QKHGRFDEQRSATFMEELADALHYC--------HERKVIHRDIKPENLLMGYKGELKIAD 157
Query: 70 F 70
F
Sbjct: 158 F 158
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 27.1 bits (60), Expect = 1.7
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 93 DQFEFDGCDNCDEFLHMKNSRDNVYNCT 120
D F C C + N + C
Sbjct: 1156 DAFRVHICGICGLMTVIAKLNHNQFECK 1183
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 27.1 bits (60), Expect = 1.9
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 15/59 (25%)
Query: 20 VQVGRMPESLAAKFTQHVGILCYCLWFLWTLVHSATMVHG--------TSNNNAKIDDF 70
+ + + ++ +L + + H +VH + K+ DF
Sbjct: 147 KKKKSIDPWERKSYWKN--MLE-AVHTI----HQHGIVHSDLKPANFLIVDGMLKLIDF 198
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors,
virtual screening, X-RAY CO- crystal analysis,
structure-based drug design (SBDD); HET: MMH; 1.90A
{Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A*
2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A*
3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A*
3lau_A* 2wtv_A* ...
Length = 279
Score = 26.8 bits (60), Expect = 1.9
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 18/61 (29%)
Query: 20 VQVGRMPESLAAK-FTQHVGILCYCLWFLWTLVHSATMVHG---------TSNNNAKIDD 69
++ + E A T+ L YC HS ++H S KI D
Sbjct: 101 QKLSKFDEQRTATYITELANALSYC--------HSKRVIHRDIKPENLLLGSAGELKIAD 152
Query: 70 F 70
F
Sbjct: 153 F 153
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 26.2 bits (58), Expect = 3.1
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 15/59 (25%)
Query: 20 VQVGRMPESLAAKFTQHVGILCYCLWFLWTLVHSATMVHG--------TSNNNAKIDDF 70
+ + + ++ + + + H +VH + K+ DF
Sbjct: 100 KKKKSIDPWERKSYWKN---MLEAVHTI----HQHGIVHSDLKPANFLIVDGMLKLIDF 151
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 26.1 bits (58), Expect = 3.8
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 15/59 (25%)
Query: 20 VQVGRMPESLAAKFTQHVGILCYCLWFLWTLVHSATMVHG--------TSNNNAKIDDF 70
+ + + ++ +L + + H +VH + K+ DF
Sbjct: 119 KKKKSIDPWERKSYWKN--MLE-AVHTI----HQHGIVHSDLKPANFLIVDGMLKLIDF 170
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 25.5 bits (56), Expect = 6.6
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 56 MVHGTSNNNAKID-DFNNLAKYFRQA 80
M H N +D NL K R
Sbjct: 100 MNHRAVQNTVPLDQRHLNLGKALRGV 125
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif,
transcription activator/DNA complex; 2.85A
{Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Length = 72
Score = 24.0 bits (52), Expect = 8.1
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 78 RQARACLGCSQIKT---FDQFEFDGCDNC 103
++ AC+ C Q K+ + + C C
Sbjct: 1 KRKFACVECRQQKSKCDAHERAPEPCTKC 29
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 24.9 bits (55), Expect = 8.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 100 CDNCDEFLHMKNSRDNVYNCTSSNF 124
CD+C + L+ N+ C +
Sbjct: 27 CDSCGQVLYRAELERNLEVCPKCDH 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.135 0.450
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,893,064
Number of extensions: 94015
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 35
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)