RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8227
         (125 letters)



>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit
           E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
          Length = 67

 Score = 28.1 bits (63), Expect = 0.090
 Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 17/45 (37%)

Query: 81  RACLGCSQIKTFDQFEFDGCDNCDEFLHMKNSRDNVYNCTSSNFD 125
           +AC  C  I + D+     C  C                 S  + 
Sbjct: 10  KACRHCHYITSEDR-----CPVCGS------------RDLSEEWF 37


>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 26.5 bits (58), Expect = 0.62
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 37  VGILCYCLWFLWTLVHSATMVHGTSNNNAKIDDFNNLAKYF 77
           VGI+   LW ++  +  A  +     +  + +D N +AK F
Sbjct: 97  VGIV---LWNIFNRMPIARKI---IKDGEQHEDLNEVAKLF 131


>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 257

 Score = 24.2 bits (52), Expect = 4.8
 Identities = 3/24 (12%), Positives = 8/24 (33%)

Query: 58 HGTSNNNAKIDDFNNLAKYFRQAR 81
           GTS ++    +     +    + 
Sbjct: 9  FGTSYHDTCEKNIVACERDLAASC 32


>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 172

 Score = 23.5 bits (50), Expect = 7.2
 Identities = 7/71 (9%), Positives = 17/71 (23%), Gaps = 1/71 (1%)

Query: 40  LCYCLWFLWTLVHSATMVHGTSNNNAKIDDFNNLAKYFRQARACLGCSQIKT-FDQFEFD 98
                     L            + +   D   L K        L    + +   ++  +
Sbjct: 66  FNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN 125

Query: 99  GCDNCDEFLHM 109
           G    D+++  
Sbjct: 126 GKITFDDYIAC 136


>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
           molybdoprotein {Oligotropha carboxidovorans, formerly
           Pseudomonas carboxydovorans [TaxId: 40137]}
          Length = 663

 Score = 23.8 bits (50), Expect = 7.9
 Identities = 13/127 (10%), Positives = 30/127 (23%), Gaps = 4/127 (3%)

Query: 3   ARDEVAQLWAYVRSHVHVQVGRMPESLAAKFTQHVGILCYCLWFLWTLVHSATMVHGTSN 62
            R  V+ +       +HV    +      K   + G +C  +  +   V    +     N
Sbjct: 99  IRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMEN 158

Query: 63  NNAKIDDFNNLAKYFRQARACLGCSQIKTFDQFEF----DGCDNCDEFLHMKNSRDNVYN 118
            +      +        A        ++     +        D         N     Y+
Sbjct: 159 LSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYD 218

Query: 119 CTSSNFD 125
              ++  
Sbjct: 219 MPVAHLA 225


>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1207

 Score = 23.7 bits (50), Expect = 9.8
 Identities = 6/27 (22%), Positives = 8/27 (29%)

Query: 93   DQFEFDGCDNCDEFLHMKNSRDNVYNC 119
            D F    C  C     +     N + C
Sbjct: 1139 DAFRVHICGICGLMTVIAKLNHNQFEC 1165


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.135    0.450 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 474,575
Number of extensions: 19678
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 21
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.6 bits)