Query psy8228
Match_columns 149
No_of_seqs 282 out of 1981
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 21:58:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ipl_A 2-succinylbenzoate--COA 99.7 1.5E-18 5E-23 148.3 7.4 91 1-116 403-498 (501)
2 4fuq_A Malonyl COA synthetase; 99.7 5.3E-18 1.8E-22 145.9 9.8 87 2-113 405-498 (503)
3 3r44_A Fatty acyl COA syntheta 99.7 3.7E-18 1.3E-22 147.3 8.6 87 1-112 418-510 (517)
4 3ni2_A 4-coumarate:COA ligase; 99.7 7.1E-18 2.4E-22 145.9 10.1 86 2-112 440-532 (536)
5 3nyq_A Malonyl-COA ligase; A/B 99.7 3.5E-18 1.2E-22 147.3 7.6 80 1-85 411-498 (505)
6 1t5h_X 4-chlorobenzoyl COA lig 99.7 1.1E-17 3.8E-22 143.4 10.4 81 1-85 407-494 (504)
7 1mdb_A 2,3-dihydroxybenzoate-A 99.7 8.8E-18 3E-22 145.7 9.4 80 1-85 435-521 (539)
8 4gs5_A Acyl-COA synthetase (AM 99.7 6.3E-18 2.2E-22 140.8 5.9 87 1-112 255-351 (358)
9 1amu_A GRSA, gramicidin synthe 99.7 1.3E-17 4.6E-22 145.9 7.6 80 1-85 435-519 (563)
10 3g7s_A Long-chain-fatty-acid-- 99.7 3.8E-18 1.3E-22 148.0 3.7 80 1-85 444-532 (549)
11 3etc_A AMP-binding protein; ad 99.7 1.2E-17 4.1E-22 146.9 6.3 79 2-85 481-569 (580)
12 2d1s_A Luciferase, luciferin 4 99.7 3.5E-17 1.2E-21 142.4 8.6 80 1-85 446-533 (548)
13 3e7w_A D-alanine--poly(phospho 99.7 7.5E-17 2.6E-21 138.5 9.0 88 2-114 404-502 (511)
14 4gr5_A Non-ribosomal peptide s 99.7 3.7E-18 1.3E-22 148.9 0.0 88 1-113 474-569 (570)
15 3fce_A D-alanine--poly(phospho 99.7 1.2E-16 3.9E-21 137.2 9.2 87 2-113 405-502 (512)
16 1pg4_A Acetyl-COA synthetase; 99.7 1E-16 3.5E-21 142.6 9.0 79 2-85 523-611 (652)
17 3l8c_A D-alanine--poly(phospho 99.7 7.4E-17 2.5E-21 138.4 7.7 90 1-115 408-512 (521)
18 3ivr_A Putative long-chain-fat 99.7 6E-18 2.1E-22 145.0 0.0 80 1-85 405-491 (509)
19 3c5e_A Acyl-coenzyme A synthet 99.7 1.7E-16 6E-21 139.0 8.9 89 1-114 461-561 (570)
20 2v7b_A Benzoate-coenzyme A lig 99.6 4.1E-16 1.4E-20 134.2 8.1 79 1-85 434-522 (529)
21 1v25_A Long-chain-fatty-acid-C 99.6 4.8E-17 1.6E-21 141.1 2.0 81 1-85 440-526 (541)
22 3o83_A Peptide arylation enzym 99.6 3.1E-17 1.1E-21 142.4 0.0 81 1-85 444-530 (544)
23 1ry2_A Acetyl-coenzyme A synth 99.6 4.9E-16 1.7E-20 138.9 7.5 89 1-114 531-636 (663)
24 3rg2_A Enterobactin synthase c 99.6 1.7E-15 5.8E-20 133.4 9.8 81 1-85 439-524 (617)
25 3rix_A Luciferase, luciferin 4 99.6 1.1E-16 3.8E-21 138.8 0.0 80 1-85 444-531 (550)
26 3tsy_A Fusion protein 4-coumar 99.6 2.9E-16 9.8E-21 145.0 0.0 80 1-85 486-572 (979)
27 3lax_A Phenylacetate-coenzyme 99.6 2.5E-15 8.7E-20 106.1 4.7 78 2-85 10-100 (109)
28 4dg8_A PA1221; ANL superfamily 99.5 2.9E-15 9.8E-20 133.1 4.9 80 1-85 424-503 (620)
29 3ite_A SIDN siderophore synthe 99.5 1E-15 3.6E-20 132.6 0.0 80 1-85 432-533 (562)
30 2vsq_A Surfactin synthetase su 99.5 9.8E-15 3.3E-19 138.8 6.4 86 1-97 866-956 (1304)
31 3gxs_A Phenylacetate-coenzyme 99.5 4.4E-14 1.5E-18 100.3 5.1 78 2-85 10-100 (109)
32 3gqw_A Fatty acid AMP ligase; 99.4 7.3E-14 2.5E-18 120.2 5.7 79 2-85 467-553 (576)
33 2y4o_A Phenylacetate-coenzyme 99.4 1.3E-13 4.3E-18 116.3 3.8 79 2-85 341-434 (443)
34 3kxw_A Saframycin MX1 syntheta 99.4 7.3E-14 2.5E-18 121.0 1.7 85 2-112 464-564 (590)
35 2y27_A Phenylacetate-coenzyme 99.4 6.7E-14 2.3E-18 117.8 1.4 78 2-85 339-429 (437)
36 3qov_A Phenylacetate-coenzyme 99.3 5.6E-13 1.9E-17 112.0 2.8 78 2-85 337-427 (436)
37 2cvi_A 75AA long hypothetical 51.7 32 0.0011 21.7 5.1 44 8-54 15-58 (83)
38 2zbc_A 83AA long hypothetical 49.1 32 0.0011 21.3 4.7 41 9-54 16-58 (83)
39 2djw_A Probable transcriptiona 33.5 51 0.0018 21.1 3.9 44 8-54 15-58 (92)
40 3dxs_X Copper-transporting ATP 30.7 35 0.0012 20.2 2.5 42 8-54 17-62 (74)
41 4a4j_A Pacszia, cation-transpo 28.2 40 0.0014 19.5 2.5 42 8-54 17-61 (69)
42 2roe_A Heavy metal binding pro 27.0 48 0.0016 18.8 2.6 41 9-54 16-57 (66)
43 2kt2_A Mercuric reductase; nme 24.7 48 0.0017 18.8 2.3 42 8-54 15-59 (69)
44 2xmw_A PACS-N, cation-transpor 23.9 58 0.002 18.3 2.5 41 9-54 19-62 (71)
45 1cpz_A Protein (COPZ); copper 23.8 58 0.002 18.1 2.5 41 9-54 16-60 (68)
46 1cc8_A Protein (metallochapero 23.8 46 0.0016 19.7 2.1 41 9-54 20-62 (73)
47 2cg4_A Regulatory protein ASNC 23.6 1.8E+02 0.0063 19.9 5.8 43 9-54 83-125 (152)
48 2l3m_A Copper-ION-binding prot 23.5 56 0.0019 18.5 2.5 41 9-54 21-65 (71)
49 2hz5_A Dynein light chain 2A, 23.4 22 0.00075 24.8 0.6 21 7-27 10-33 (106)
50 1yg0_A COP associated protein; 23.3 56 0.0019 18.1 2.4 41 9-54 17-60 (66)
51 1aw0_A Menkes copper-transport 23.1 63 0.0021 18.3 2.6 41 9-54 19-63 (72)
52 2qif_A Copper chaperone COPZ; 22.9 63 0.0022 17.7 2.5 41 9-54 18-62 (69)
53 1osd_A MERP, hypothetical prot 22.4 63 0.0022 18.3 2.5 41 9-54 19-63 (72)
54 2xmm_A SSR2857 protein, ATX1; 22.0 39 0.0013 18.7 1.5 41 9-54 17-58 (64)
55 1mwy_A ZNTA; open-faced beta-s 21.3 65 0.0022 18.6 2.4 18 9-26 19-36 (73)
56 2aj0_A Probable cadmium-transp 20.7 64 0.0022 18.6 2.3 19 8-26 18-36 (71)
57 3cjk_B Copper-transporting ATP 20.6 72 0.0025 18.4 2.5 41 9-54 18-62 (75)
No 1
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.75 E-value=1.5e-18 Score=148.32 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-----ecCCHHHHHHHHhccccccCCCCCCceeEEEEecc
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-----KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWKN 75 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-----~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd~ 75 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..++ ...+.++|+++|++ +||.|++|+.+.++++
T Consensus 403 ~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~-----~L~~~~~P~~i~~v~~ 477 (501)
T 3ipl_A 403 SGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSK-----HLAKYKVPKHFEKVDT 477 (501)
T ss_dssp CSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHH-----HSCGGGSCSEEEECSS
T ss_pred ECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHh-----hCccccCCCEEEEecc
Confidence 4799999999999999999999999999999776554433 56789999999999 9999999999999999
Q ss_pred cCCCCCCccccCCCCCCCCccccccchhhhhHHHHhcCCCC
Q psy8228 76 WTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSGFNE 116 (149)
Q Consensus 76 lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~ 116 (149)
||+|++||++ |+.|++.....
T Consensus 478 lP~t~~GKi~--------------------R~~l~~~~~~~ 498 (501)
T 3ipl_A 478 LPYTSTGKLQ--------------------RNKLYREGHHH 498 (501)
T ss_dssp CC---------------------------------------
T ss_pred cCCCCCCCEe--------------------HHHHhhccccc
Confidence 9999999999 99998886543
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.74 E-value=5.3e-18 Score=145.91 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=78.7
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCCHHHHHHHHhccccccCCCCCCceeEEEEec
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWK 74 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd 74 (149)
+|+||+|.|||++|.+||+|.+|+|+|++++..++..++ ...+.++++++|++ +||+|++|+.+.+++
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~i~~v~ 479 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDG-----QLAKFKMPKKVIFVD 479 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBT-----TBCGGGCCSEEEEES
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHh-----hcccCCCCCEEEEEC
Confidence 799999999999999999999999999999876554333 35688999999999 999999999999999
Q ss_pred ccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhcC
Q psy8228 75 NWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSG 113 (149)
Q Consensus 75 ~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~~ 113 (149)
+||+|++||++ |+.|++..
T Consensus 480 ~lP~t~~GKi~--------------------R~~L~~~~ 498 (503)
T 4fuq_A 480 DLPRNTMGKVQ--------------------KNVLRETY 498 (503)
T ss_dssp CCCBCTTSCBC--------------------HHHHHHHT
T ss_pred CCCCCccccee--------------------HHHHHHHH
Confidence 99999999999 99999873
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.74 E-value=3.7e-18 Score=147.33 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=78.5
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE------ecCCHHHHHHHHhccccccCCCCCCceeEEEEec
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWK 74 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd 74 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..++ ...+.++|+++|++ +||.|++|+.+.+++
T Consensus 418 ~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~i~~v~ 492 (517)
T 3r44_A 418 SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGT-----RLARYKLPKKVIFAE 492 (517)
T ss_dssp ETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHH-----HSCGGGSCSEEEECS
T ss_pred ECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHH-----hCCCCCCCCEEEEEC
Confidence 3799999999999999999999999999999776554333 35688999999999 999999999999999
Q ss_pred ccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhc
Q psy8228 75 NWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRS 112 (149)
Q Consensus 75 ~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~ 112 (149)
+||+|++||++ |+.|++.
T Consensus 493 ~lP~t~~GKi~--------------------R~~L~~~ 510 (517)
T 3r44_A 493 AIPRNPTGKIL--------------------KTVLREQ 510 (517)
T ss_dssp CCCBCTTCCBC--------------------HHHHHHH
T ss_pred CCCCCCCcCcc--------------------HHHHHHH
Confidence 99999999999 9999876
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.73 E-value=7.1e-18 Score=145.93 Aligned_cols=86 Identities=21% Similarity=0.216 Sum_probs=78.3
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCCHHHHHHHHhccccccCCCCCCceeEEEEec
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWK 74 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd 74 (149)
+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ...+.++|+++|++ +||.|++|+.+.+++
T Consensus 440 ~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~-----~l~~~~~p~~i~~v~ 514 (536)
T 3ni2_A 440 KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISK-----QVIFYKRIKRVFFIE 514 (536)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHT-----TSCGGGCCSEEEECS
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHH-----hccCCccccEEEEEe
Confidence 799999999999999999999999999999776554443 35678999999999 999999999999999
Q ss_pred ccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhc
Q psy8228 75 NWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRS 112 (149)
Q Consensus 75 ~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~ 112 (149)
+||+|++||++ |+.|++.
T Consensus 515 ~lP~t~~GKi~--------------------R~~L~~~ 532 (536)
T 3ni2_A 515 AIPKAPSGKIL--------------------RKNLKEK 532 (536)
T ss_dssp CCCBCTTSCBC--------------------HHHHHTC
T ss_pred cCCCCCCCCee--------------------HHHHHHH
Confidence 99999999999 9999986
No 5
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.73 E-value=3.5e-18 Score=147.32 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=65.3
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE--------ecCCHHHHHHHHhccccccCCCCCCceeEEEE
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL--------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWL 72 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A--------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~ 72 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ...+.++|+++|++ +||+|++|+.+.+
T Consensus 411 ~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~i~~ 485 (505)
T 3nyq_A 411 SGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAA-----RLAPHKRPRVVRY 485 (505)
T ss_dssp ETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHH-----HTCGGGSCSEEEE
T ss_pred eCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHh-----hCCCCcCccEEEE
Confidence 3799999999999999999999999999999876555443 24567899999999 9999999999999
Q ss_pred ecccCCCCCCccc
Q psy8228 73 WKNWTLVDVFKTQ 85 (149)
Q Consensus 73 vd~lP~T~tGKi~ 85 (149)
+++||+|++||++
T Consensus 486 v~~lP~t~~GKi~ 498 (505)
T 3nyq_A 486 LDAVPRNDMGKIM 498 (505)
T ss_dssp CSCCCC-------
T ss_pred ECCCCCCCCcCee
Confidence 9999999999999
No 6
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.73 E-value=1.1e-17 Score=143.44 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=71.8
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCCHHHHHHHHhccccccCCCCCCceeEEEEe
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLW 73 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~v 73 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++|+..++..+| ...+.++|+++|++ .+||.|++|+.+.++
T Consensus 407 ~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~----~~L~~~~~P~~i~~v 482 (504)
T 1t5h_X 407 SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS----SELADFKRPKRYFIL 482 (504)
T ss_dssp ETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHT----SSCCGGGSCSEEEEC
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhh----ccCcccccceEEEEh
Confidence 3799999999999999999999999999999876655443 24678999999985 269999999999999
Q ss_pred cccCCCCCCccc
Q psy8228 74 KNWTLVDVFKTQ 85 (149)
Q Consensus 74 d~lP~T~tGKi~ 85 (149)
++||+|++||++
T Consensus 483 ~~lP~t~~GKi~ 494 (504)
T 1t5h_X 483 DQLPKNALNKVL 494 (504)
T ss_dssp SCCCBCTTSCBC
T ss_pred hhCCCCCCCCEe
Confidence 999999999999
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.73 E-value=8.8e-18 Score=145.67 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=72.2
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE------ecCCHHHHHHHHhccccccC-CCCCCceeEEEEe
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL------KKIKLFQVFTSMKRQQCIRA-FLTYKFIMAIWLW 73 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A------~~~~~~~L~~~l~~~~~~~~-L~~ykvP~~v~~v 73 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++|+..++..+| ...+.++|+++|++ + ||.|++|+.+.++
T Consensus 435 ~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~-----~~L~~~~~P~~i~~v 509 (539)
T 1mdb_A 435 RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRE-----RGLAAYKIPDRVEFV 509 (539)
T ss_dssp CSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHH-----TTCCGGGSCSEEEEC
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHh-----CCCCcccCCCEEEEe
Confidence 4799999999999999999999999999999766554443 34678999999998 7 9999999999999
Q ss_pred cccCCCCCCccc
Q psy8228 74 KNWTLVDVFKTQ 85 (149)
Q Consensus 74 d~lP~T~tGKi~ 85 (149)
++||+|++||++
T Consensus 510 ~~lP~t~~GKi~ 521 (539)
T 1mdb_A 510 ESFPQTGVGKVS 521 (539)
T ss_dssp SSCCBCTTSCBC
T ss_pred ccCCCCCCcCEe
Confidence 999999999999
No 8
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.71 E-value=6.3e-18 Score=140.82 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=74.7
Q ss_pred CCeEEechHHHHHHH---hcCCCcccEEEE-EEEcCCCCeeEEE------ecCCHHHHHHHHhccccccCCCCCCceeEE
Q psy8228 1 WRGENVATSEVEDAL---SKIVQLKDAAVY-GVETSALNTLGVL------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAI 70 (149)
Q Consensus 1 wgGenVsp~EVE~vL---~~hP~V~eaaVv-GVpd~~~~~~~~A------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v 70 (149)
.+|+||+|.|||++| .+||+|.+|+|+ ++||+..++..+| ...+.++|+++|++ +||+|++|+.|
T Consensus 255 ~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~i 329 (358)
T 4gs5_A 255 SGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRS-----RVSTYENPKHI 329 (358)
T ss_dssp ETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHH-----HSCGGGSCSCE
T ss_pred ECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHh-----hCCCCCCceEE
Confidence 379999999999887 468999999886 7888776555444 23456789999999 99999999999
Q ss_pred EEecccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhc
Q psy8228 71 WLWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRS 112 (149)
Q Consensus 71 ~~vd~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~ 112 (149)
.++++||+|++||++ |+.|+++
T Consensus 330 ~~v~~lP~t~~GKi~--------------------R~~L~~~ 351 (358)
T 4gs5_A 330 YFAKAFAKTQTDKID--------------------KRATFQK 351 (358)
T ss_dssp EEESSCCBCTTSCBC--------------------HHHHHHH
T ss_pred EEECCcCCCCCCChh--------------------HHHHHHH
Confidence 999999999999999 9999887
No 9
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.70 E-value=1.3e-17 Score=145.85 Aligned_cols=80 Identities=23% Similarity=0.126 Sum_probs=72.4
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-----ecCCHHHHHHHHhccccccCCCCCCceeEEEEecc
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-----KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWKN 75 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-----~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd~ 75 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++|+..++..+| ...+.++|+++|++ +||.|++|+.+.++++
T Consensus 435 ~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~-----~L~~y~~P~~i~~v~~ 509 (563)
T 1amu_A 435 IRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSE-----ELPTYMIPSYFIQLDK 509 (563)
T ss_dssp ETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHH-----HSCGGGSCSEEEECSS
T ss_pred ECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHh-----hCchhhCCcEEEEecc
Confidence 3799999999999999999999999999998765544444 45788999999999 9999999999999999
Q ss_pred cCCCCCCccc
Q psy8228 76 WTLVDVFKTQ 85 (149)
Q Consensus 76 lP~T~tGKi~ 85 (149)
||+|++||++
T Consensus 510 lP~t~~GKi~ 519 (563)
T 1amu_A 510 MPLTSNGKID 519 (563)
T ss_dssp CCBCTTSSBC
T ss_pred cCCCCCcChh
Confidence 9999999999
No 10
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.70 E-value=3.8e-18 Score=148.00 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=49.1
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE---------ecCCHHHHHHHHhccccccCCCCCCceeEEE
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL---------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIW 71 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A---------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~ 71 (149)
++|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ...+.++|+++|++ +||.|++|+.+.
T Consensus 444 ~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~i~ 518 (549)
T 3g7s_A 444 YKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRE-----RISGYKRVREVE 518 (549)
T ss_dssp -------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHT-----TCC-----CCCC
T ss_pred ECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHH-----hccCcccceEEE
Confidence 4799999999999999999999999999998766554333 13678999999999 999999999999
Q ss_pred EecccCCCCCCccc
Q psy8228 72 LWKNWTLVDVFKTQ 85 (149)
Q Consensus 72 ~vd~lP~T~tGKi~ 85 (149)
++++||+|++||++
T Consensus 519 ~v~~lP~t~~GKi~ 532 (549)
T 3g7s_A 519 FVEELPRTASGKLL 532 (549)
T ss_dssp EEEECC--------
T ss_pred EeccCCCCCCcCEe
Confidence 99999999999999
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.70 E-value=1.2e-17 Score=146.86 Aligned_cols=79 Identities=19% Similarity=0.097 Sum_probs=59.5
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCC---HHHHHHHHhccccccCCCCCCceeEEE
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIK---LFQVFTSMKRQQCIRAFLTYKFIMAIW 71 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~---~~~L~~~l~~~~~~~~L~~ykvP~~v~ 71 (149)
+|+||+|.|||++|.+||+|.+|+|+|+||+..++..+| ...+ .++|+++|++ +||+|++|+.+.
T Consensus 481 ~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~-----~l~~~~~P~~i~ 555 (580)
T 3etc_A 481 SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKN-----VTAPYKYPRIIE 555 (580)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHH-----HSCGGGCCSEEE
T ss_pred CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHh-----hCCCccCCeEEE
Confidence 799999999999999999999999999999876554433 1112 4689999999 999999999999
Q ss_pred EecccCCCCCCccc
Q psy8228 72 LWKNWTLVDVFKTQ 85 (149)
Q Consensus 72 ~vd~lP~T~tGKi~ 85 (149)
++++||+|++||++
T Consensus 556 ~v~~lP~t~sGKi~ 569 (580)
T 3etc_A 556 FVPELPKTISGKIR 569 (580)
T ss_dssp EECC----------
T ss_pred EeCCCCCCCCcCCc
Confidence 99999999999999
No 12
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.69 E-value=3.5e-17 Score=142.40 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=72.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCCHHHHHHHHhccccccCCCCCCcee-EEEE
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIKLFQVFTSMKRQQCIRAFLTYKFIM-AIWL 72 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~~~~L~~~l~~~~~~~~L~~ykvP~-~v~~ 72 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ...+.++|+++|++ +|+.|++|+ .+.+
T Consensus 446 ~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~-----~l~~~~~p~~~i~~ 520 (548)
T 2d1s_A 446 YKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVAS-----QVSNAKRLRGGVRF 520 (548)
T ss_dssp BTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHT-----TSCGGGSCTTCEEE
T ss_pred ECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHH-----hccccccccccEEE
Confidence 3799999999999999999999999999999766544433 24678999999999 999999999 9999
Q ss_pred ecccCCCCCCccc
Q psy8228 73 WKNWTLVDVFKTQ 85 (149)
Q Consensus 73 vd~lP~T~tGKi~ 85 (149)
+++||+|++||++
T Consensus 521 v~~lP~t~~GKi~ 533 (548)
T 2d1s_A 521 VDEVPKGLTGKID 533 (548)
T ss_dssp CSSCCBCTTSCBC
T ss_pred ccCCCCCCcchhH
Confidence 9999999999999
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.68 E-value=7.5e-17 Score=138.51 Aligned_cols=88 Identities=9% Similarity=0.019 Sum_probs=75.7
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----e---cCC----HHHHHHHHhccccccCCCCCCceeEE
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL----K---KIK----LFQVFTSMKRQQCIRAFLTYKFIMAI 70 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~---~~~----~~~L~~~l~~~~~~~~L~~ykvP~~v 70 (149)
+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| . ..+ .++|+++|++ +||.|++|+.+
T Consensus 404 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~~ 478 (511)
T 3e7w_A 404 HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAA-----SLPAYMIPRKF 478 (511)
T ss_dssp TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHH-----HSCGGGSCSEE
T ss_pred CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHh-----hCchhhCCeeE
Confidence 799999999999999999999999999998766555333 1 112 3678889988 99999999999
Q ss_pred EEecccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhcCC
Q psy8228 71 WLWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSGF 114 (149)
Q Consensus 71 ~~vd~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~ 114 (149)
.++++||+|++||++ |+.|++...
T Consensus 479 ~~v~~lP~t~~GKi~--------------------R~~L~~~~~ 502 (511)
T 3e7w_A 479 IYQDHIQMTANGKID--------------------RKRIGEEVL 502 (511)
T ss_dssp EECSCCCBCTTSCBC--------------------HHHHHHHHH
T ss_pred EEeccCCCCCCcCcc--------------------HHHHHhHHh
Confidence 999999999999999 999998743
No 14
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.67 E-value=3.7e-18 Score=148.89 Aligned_cols=88 Identities=19% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE--------ecCCHHHHHHHHhccccccCCCCCCceeEEEE
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL--------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWL 72 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A--------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~ 72 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ...+.++|+++|++ +||.|++|+.+.+
T Consensus 474 ~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~-----~l~~~~~P~~i~~ 548 (570)
T 4gr5_A 474 IRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAE-----ALPAYMVPVECVP 548 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHh-----hCccccCCcEEEE
Confidence 3799999999999999999999999999998655544333 24567889999999 9999999999999
Q ss_pred ecccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhcC
Q psy8228 73 WKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSG 113 (149)
Q Consensus 73 vd~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~~ 113 (149)
+++||+|++||++ |+.|++.|
T Consensus 549 v~~lP~t~~GKi~--------------------R~~L~~~g 569 (570)
T 4gr5_A 549 VDELPRTPNGKLD--------------------RRALTGSG 569 (570)
T ss_dssp -----------------------------------------
T ss_pred cccCCCCCCcCcc--------------------hHhhhccC
Confidence 9999999999999 99998765
No 15
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.67 E-value=1.2e-16 Score=137.16 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=74.5
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----e--c-CC----HHHHHHHHhccccccCCCCCCceeEE
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL----K--K-IK----LFQVFTSMKRQQCIRAFLTYKFIMAI 70 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~--~-~~----~~~L~~~l~~~~~~~~L~~ykvP~~v 70 (149)
+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| . . .+ .++|+++|++ +||.|++|+.+
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~~ 479 (512)
T 3fce_A 405 HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE-----RLPNYMIPRKF 479 (512)
T ss_dssp TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHT-----TSCGGGSCSEE
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHh-----hCchhcCCeEE
Confidence 799999999999999999999999999998655444333 1 1 12 3578899988 99999999999
Q ss_pred EEecccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhcC
Q psy8228 71 WLWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSG 113 (149)
Q Consensus 71 ~~vd~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~~ 113 (149)
.++++||+|++||++ |+.|++..
T Consensus 480 ~~~~~lP~t~~GKi~--------------------R~~L~~~~ 502 (512)
T 3fce_A 480 MYQSSIPMTPNGKVD--------------------RKKLLSEV 502 (512)
T ss_dssp EECSCCCBCTTSSBC--------------------HHHHHHHH
T ss_pred EEecccCCCCCcChH--------------------HHHHHhhh
Confidence 999999999999999 99998874
No 16
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.67 E-value=1e-16 Score=142.63 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=69.6
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCC---HHHHHHHHhccccccCCCCCCceeEEE
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIK---LFQVFTSMKRQQCIRAFLTYKFIMAIW 71 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~---~~~L~~~l~~~~~~~~L~~ykvP~~v~ 71 (149)
+|+||+|.|||++|.+||+|.||+|+|++|+..++..+| ...+ .++|+++|++ +|++|++|+.|.
T Consensus 523 ~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~-----~l~~~~~P~~i~ 597 (652)
T 1pg4_A 523 SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRK-----EIGPLATPDVLH 597 (652)
T ss_dssp TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHH-----HTCGGGCCSEEE
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHH-----hCCCCcCCeEEE
Confidence 799999999999999999999999999998765554444 1223 4789999999 999999999999
Q ss_pred EecccCCCCCCccc
Q psy8228 72 LWKNWTLVDVFKTQ 85 (149)
Q Consensus 72 ~vd~lP~T~tGKi~ 85 (149)
++++||+|++||++
T Consensus 598 ~v~~lP~T~sGKi~ 611 (652)
T 1pg4_A 598 WTDSLPKTRSGKIM 611 (652)
T ss_dssp ECSCCCBCTTSCBC
T ss_pred EcCCCCCCCCccch
Confidence 99999999999999
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.67 E-value=7.4e-17 Score=138.40 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=70.7
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCee-EEE-----ec----CC-----HHHHHHHHhccccccCCCCCC
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTL-GVL-----KK----IK-----LFQVFTSMKRQQCIRAFLTYK 65 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~-~~A-----~~----~~-----~~~L~~~l~~~~~~~~L~~yk 65 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..+++ .+| .. .+ .++|+++|++ +||.|+
T Consensus 408 ~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~-----~l~~~~ 482 (521)
T 3l8c_A 408 YAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKD-----HMMSYM 482 (521)
T ss_dssp -----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGG-----GSCGGG
T ss_pred ECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHh-----hCcccc
Confidence 4799999999999999999999999999987655444 333 11 11 5678888888 999999
Q ss_pred ceeEEEEecccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhcCCC
Q psy8228 66 FIMAIWLWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSGFN 115 (149)
Q Consensus 66 vP~~v~~vd~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~ 115 (149)
+|+.+.++++||+|++||++ |+.|++...+
T Consensus 483 ~P~~i~~v~~lP~t~~GKid--------------------r~~L~~~~~~ 512 (521)
T 3l8c_A 483 MPSKFLYRDSLPLTPNGKID--------------------IKTLINEVNN 512 (521)
T ss_dssp SCSEEEECSSCCBCTTSSBC--------------------HHHHHHHTC-
T ss_pred CCeEEEEecccCCCCCcCcc--------------------HHHHhhhhhc
Confidence 99999999999999999999 9999988543
No 18
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.66 E-value=6e-18 Score=145.04 Aligned_cols=80 Identities=21% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCCHHHHHHHHhccccccCCCCCCceeEEEEe
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLW 73 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~v 73 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..++ ...+.++|+++|++ +||.|++|+.+.++
T Consensus 405 ~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~i~~v 479 (509)
T 3ivr_A 405 TGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVAS-----LIARYKKPKHVVFV 479 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHh-----hCcccCCCcEEEEe
Confidence 3799999999999999999999999999998766554333 34667899999999 99999999999999
Q ss_pred cccCCCCCCccc
Q psy8228 74 KNWTLVDVFKTQ 85 (149)
Q Consensus 74 d~lP~T~tGKi~ 85 (149)
++||+|++||++
T Consensus 480 ~~lP~t~~GKid 491 (509)
T 3ivr_A 480 EALPKDAKGAID 491 (509)
T ss_dssp ------------
T ss_pred cCCCCCCCCCcc
Confidence 999999999999
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.66 E-value=1.7e-16 Score=138.96 Aligned_cols=89 Identities=19% Similarity=0.136 Sum_probs=76.2
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-----ecC-------CHHHHHHHHhccccccCCCCCCcee
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-----KKI-------KLFQVFTSMKRQQCIRAFLTYKFIM 68 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-----~~~-------~~~~L~~~l~~~~~~~~L~~ykvP~ 68 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ... ..++|+++|++ +||.|++|+
T Consensus 461 ~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~-----~L~~~~~P~ 535 (570)
T 3c5e_A 461 SSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKS-----VTAPYKYPR 535 (570)
T ss_dssp ETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHH-----HSCGGGSCS
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHh-----hCccccCCc
Confidence 3799999999999999999999999999998765544433 111 15678899988 999999999
Q ss_pred EEEEecccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhcCC
Q psy8228 69 AIWLWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSGF 114 (149)
Q Consensus 69 ~v~~vd~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~ 114 (149)
.+.++++||+|++||++ |+.|++...
T Consensus 536 ~i~~v~~lP~t~~GKi~--------------------R~~L~~~~~ 561 (570)
T 3c5e_A 536 KIEFVLNLPKTVTGKIQ--------------------RAKLRDKEW 561 (570)
T ss_dssp EEEEESCCCBCTTCCBC--------------------HHHHHHHHT
T ss_pred EEEEeccCCCCCCcCCc--------------------HHHHHHHHH
Confidence 99999999999999999 999988643
No 20
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.63 E-value=4.1e-16 Score=134.19 Aligned_cols=79 Identities=20% Similarity=0.100 Sum_probs=63.8
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-----ecC-----CHHHHHHHHhccccccCCCCCCceeEE
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-----KKI-----KLFQVFTSMKRQQCIRAFLTYKFIMAI 70 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-----~~~-----~~~~L~~~l~~~~~~~~L~~ykvP~~v 70 (149)
.+|+||+|.|||++|.+||+|.+|+|+|+ ++..++..+| ... ..++|+++|++ +||.|++|+.+
T Consensus 434 ~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~-----~L~~~~~P~~i 507 (529)
T 2v7b_A 434 VSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKD-----RLAPHKYPRDI 507 (529)
T ss_dssp ----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHT-----TSCTTTSCSEE
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHh-----hcchhhCCeEE
Confidence 37999999999999999999999999999 5444433333 111 24679999998 99999999999
Q ss_pred EEecccCCCCCCccc
Q psy8228 71 WLWKNWTLVDVFKTQ 85 (149)
Q Consensus 71 ~~vd~lP~T~tGKi~ 85 (149)
.++++||+|++||++
T Consensus 508 ~~v~~lP~t~~GKi~ 522 (529)
T 2v7b_A 508 VFVDDLPKTATGKIQ 522 (529)
T ss_dssp EEESCCCBCTTSCBC
T ss_pred EEeccCCCCCccchh
Confidence 999999999999999
No 21
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.63 E-value=4.8e-17 Score=141.07 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=37.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE------ecCCHHHHHHHHhccccccCCCCCCceeEEEEec
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWK 74 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd 74 (149)
++|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ...+.++++++|++ .+||.|++|+.+.+++
T Consensus 440 ~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~----~~L~~~~~P~~i~~v~ 515 (541)
T 1v25_A 440 SGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLK----AGFAKWQLPDAYVFAE 515 (541)
T ss_dssp ETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------------------CCCTTTSCSBC----
T ss_pred eCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHh----ccCccccCCcEEEEeC
Confidence 3799999999999999999999999999999876665544 23456778888865 2699999999999999
Q ss_pred ccCCCCCCccc
Q psy8228 75 NWTLVDVFKTQ 85 (149)
Q Consensus 75 ~lP~T~tGKi~ 85 (149)
+||+|++||++
T Consensus 516 ~lP~t~~GKi~ 526 (541)
T 1v25_A 516 EIPRTSAGKFL 526 (541)
T ss_dssp ----------C
T ss_pred CCCCCCccCee
Confidence 99999999999
No 22
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.62 E-value=3.1e-17 Score=142.37 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE------ecCCHHHHHHHHhccccccCCCCCCceeEEEEec
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWK 74 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd 74 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ...+.++++++|++ .+||.|++|+.+.+++
T Consensus 444 ~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~----~~l~~~~~P~~i~~v~ 519 (544)
T 3o83_A 444 RGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLME----LGIAQYKLPDQIKLIE 519 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHh----CCCCcccCCcEEEEec
Confidence 4799999999999999999999999999998776555433 34566788888876 1599999999999999
Q ss_pred ccCCCCCCccc
Q psy8228 75 NWTLVDVFKTQ 85 (149)
Q Consensus 75 ~lP~T~tGKi~ 85 (149)
+||+|++||++
T Consensus 520 ~lP~t~~GKi~ 530 (544)
T 3o83_A 520 SLPLTAVGKVD 530 (544)
T ss_dssp -----------
T ss_pred cCCCCCCCCCc
Confidence 99999999999
No 23
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.62 E-value=4.9e-16 Score=138.88 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=75.7
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-----e--c---C-C------HHHHHHHHhccccccCCCC
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-----K--K---I-K------LFQVFTSMKRQQCIRAFLT 63 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-----~--~---~-~------~~~L~~~l~~~~~~~~L~~ 63 (149)
.+|+||+|.|||++|.+||+|.||+|+|++++..++..+| . . . + .++|+++|++ +|++
T Consensus 531 ~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~L~~ 605 (663)
T 1ry2_A 531 VSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRK-----DIGP 605 (663)
T ss_dssp SSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHH-----HTCT
T ss_pred ECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHH-----hCCC
Confidence 3799999999999999999999999999998765554333 1 1 2 2 4678999998 9999
Q ss_pred CCceeEEEEecccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhcCC
Q psy8228 64 YKFIMAIWLWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSGF 114 (149)
Q Consensus 64 ykvP~~v~~vd~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~ 114 (149)
|++|+.|.++++||+|+|||++ |+.|++...
T Consensus 606 ~~~P~~i~~v~~lP~T~sGKi~--------------------R~~L~~~~~ 636 (663)
T 1ry2_A 606 FAAPKLIILVDDLPKTRSGKIM--------------------RRILRKILA 636 (663)
T ss_dssp TTSCSEEEECSCCCBCTTSCBC--------------------HHHHHHSCC
T ss_pred CcCCeEEEEcCCCCCCCccCch--------------------HHHHHHHHc
Confidence 9999999999999999999999 999998743
No 24
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.61 E-value=1.7e-15 Score=133.44 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=71.6
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-----ecCCHHHHHHHHhccccccCCCCCCceeEEEEecc
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-----KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWKN 75 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-----~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd~ 75 (149)
.+|+||+|.|||++|.+||+|.+|+|++++++..++..++ ...+.++++++|+++ .||.|++|..+.++++
T Consensus 439 i~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~----~lp~~~vP~~~~~v~~ 514 (617)
T 3rg2_A 439 RGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQ----GIAEFKLPDRVECVDS 514 (617)
T ss_dssp ETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTT----TCCGGGSCSEEEECSC
T ss_pred ECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhC----CCccccCCcEEEEecc
Confidence 3799999999999999999999999999998765444433 457789999999871 4999999999999999
Q ss_pred cCCCCCCccc
Q psy8228 76 WTLVDVFKTQ 85 (149)
Q Consensus 76 lP~T~tGKi~ 85 (149)
||+|++||++
T Consensus 515 lP~t~~GKid 524 (617)
T 3rg2_A 515 LPLTAVGKVD 524 (617)
T ss_dssp CCBCTTSSBC
T ss_pred cCCCCCCCCc
Confidence 9999999999
No 25
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.58 E-value=1.1e-16 Score=138.82 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCCHHHHHHHHhccccccCCCCCCcee-EEEE
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIKLFQVFTSMKRQQCIRAFLTYKFIM-AIWL 72 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~~~~L~~~l~~~~~~~~L~~ykvP~-~v~~ 72 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..++ ...+.++++++|++ +|++|++|+ .+.+
T Consensus 444 ~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~-----~l~~~~~~~~~i~~ 518 (550)
T 3rix_A 444 YKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS-----QVTTAKKLRGGVVF 518 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHH-----hcccccccCCceEE
Confidence 3799999999999999999999999999998776554333 34677899999998 999997765 6999
Q ss_pred ecccCCCCCCccc
Q psy8228 73 WKNWTLVDVFKTQ 85 (149)
Q Consensus 73 vd~lP~T~tGKi~ 85 (149)
+++||+|++||++
T Consensus 519 v~~lP~t~~GKi~ 531 (550)
T 3rix_A 519 VDEVPKGLTGKLD 531 (550)
T ss_dssp -------------
T ss_pred EeecCCCCCccee
Confidence 9999999999999
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.56 E-value=2.9e-16 Score=144.98 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCCHHHHHHHHhccccccCCCCCCceeEEEEe
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLW 73 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~v 73 (149)
.+|+||+|.|||++|.+||+|.+|+|+|++++..++..+| ...+.++|+++|++ +||.|++|+.+.++
T Consensus 486 ~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~-----~l~~~~~p~~i~~v 560 (979)
T 3tsy_A 486 YKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSK-----QVVFYKRINKVFFT 560 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHH-----hcccccCCeEEEEe
Confidence 4799999999999999999999999999998765554333 34677899999999 99999999999999
Q ss_pred cccCCCCCCccc
Q psy8228 74 KNWTLVDVFKTQ 85 (149)
Q Consensus 74 d~lP~T~tGKi~ 85 (149)
++||+|++||++
T Consensus 561 ~~lP~t~~GKi~ 572 (979)
T 3tsy_A 561 ESIPKAPSGKIL 572 (979)
T ss_dssp ------------
T ss_pred CCcCcCCCCCee
Confidence 999999999999
No 27
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.55 E-value=2.5e-15 Score=106.10 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=55.1
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-------ecCC---HHHHHHHHhccccccCCCC-CCceeEE
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-------KKIK---LFQVFTSMKRQQCIRAFLT-YKFIMAI 70 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-------~~~~---~~~L~~~l~~~~~~~~L~~-ykvP~~v 70 (149)
+|.||||.|||++|.+||+|.+++|+|++++..++...+ ...+ .+++.+.+++ .|.. +.+|..+
T Consensus 10 ~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~-----~l~~~~gv~~~v 84 (109)
T 3lax_A 10 KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITR-----QLKDEILVTPRV 84 (109)
T ss_dssp TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHH-----HHHHHHSSCCEE
T ss_pred CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHH-----HHHHHhCCccce
Confidence 799999999999999999999999999998776554322 1122 3445555555 4432 3456668
Q ss_pred EEec--ccCCCCCCccc
Q psy8228 71 WLWK--NWTLVDVFKTQ 85 (149)
Q Consensus 71 ~~vd--~lP~T~tGKi~ 85 (149)
.+++ +||+| |||++
T Consensus 85 ~~v~~~~lPrt-sGKi~ 100 (109)
T 3lax_A 85 KLVPKGALPKS-EGKAV 100 (109)
T ss_dssp EEECTTCSCCC----CC
T ss_pred EEEcCCeecCC-CCCcc
Confidence 8885 79998 79998
No 28
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.54 E-value=2.9e-15 Score=133.14 Aligned_cols=80 Identities=15% Similarity=0.026 Sum_probs=61.8
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEEecCCHHHHHHHHhccccccCCCCCCceeEEEEecccCCCC
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVLKKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWKNWTLVD 80 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd~lP~T~ 80 (149)
.+|+||+|.|||++|.+||+|.+|+|++.+++..+...++...+.+++.++|++ +||.|++|+.+.++++||+|+
T Consensus 424 ~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~-----~Lp~y~~P~~~~~v~~lP~t~ 498 (620)
T 4dg8_A 424 LNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLR-----QLPTWQRPHACVRVEALPLTA 498 (620)
T ss_dssp ETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHH-----HSCGGGSCSEEEECSSCCCC-
T ss_pred ECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHH-----hChhhcCCcEEEEECcCCCCc
Confidence 379999999999999999999999999999863222233322233455667777 899999999999999999999
Q ss_pred CCccc
Q psy8228 81 VFKTQ 85 (149)
Q Consensus 81 tGKi~ 85 (149)
+||++
T Consensus 499 ~GKid 503 (620)
T 4dg8_A 499 HGKLD 503 (620)
T ss_dssp ---CC
T ss_pred ccCHh
Confidence 99999
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.51 E-value=1e-15 Score=132.57 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCeEEechHHHHHHHhcC-CCcccEEEEEEEcCCCCee-EEE------ecCC-------------HHHHHHHHhcccccc
Q psy8228 1 WRGENVATSEVEDALSKI-VQLKDAAVYGVETSALNTL-GVL------KKIK-------------LFQVFTSMKRQQCIR 59 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~h-P~V~eaaVvGVpd~~~~~~-~~A------~~~~-------------~~~L~~~l~~~~~~~ 59 (149)
++|+||+|.|||++|.+| |.|.+|+|++++++..++. .++ ...+ .++|+++|++
T Consensus 432 ~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 506 (562)
T 3ite_A 432 VRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQ----- 506 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHh-----
Confidence 479999999999999998 8899999999998876554 222 1111 2478888888
Q ss_pred CCCCCCceeEEEEecccCCC-CCCccc
Q psy8228 60 AFLTYKFIMAIWLWKNWTLV-DVFKTQ 85 (149)
Q Consensus 60 ~L~~ykvP~~v~~vd~lP~T-~tGKi~ 85 (149)
+||.||+|+.+.++++||+| ++||++
T Consensus 507 ~L~~y~~P~~i~~v~~lP~t~~~GKi~ 533 (562)
T 3ite_A 507 TLPAYMVPDFIIPISFIPLRDTSAKTD 533 (562)
T ss_dssp ---------------------------
T ss_pred hCCcccCCcEEEEeccCCCCCCCCcch
Confidence 99999999999999999988 999999
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.51 E-value=9.8e-15 Score=138.83 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=75.0
Q ss_pred CCeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-----ecCCHHHHHHHHhccccccCCCCCCceeEEEEecc
Q psy8228 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-----KKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWKN 75 (149)
Q Consensus 1 wgGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-----~~~~~~~L~~~l~~~~~~~~L~~ykvP~~v~~vd~ 75 (149)
++|+||+|.|||++|.+||+|.+|+|++.+++..+...+| ...+.++|+++|++ +||.|++|..+.++++
T Consensus 866 i~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~-----~Lp~ymvP~~~~~l~~ 940 (1304)
T 2vsq_A 866 IRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKK-----QLPAYMVPQTFTFLDE 940 (1304)
T ss_dssp ETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHH-----HSCGGGSCSEEEEESC
T ss_pred ECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHH-----hChHhhhccEEEEecc
Confidence 3799999999999999999999999999987654444444 35688999999999 9999999999999999
Q ss_pred cCCCCCCccccCCCCCCCCccc
Q psy8228 76 WTLVDVFKTQVAKHPNKPALKH 97 (149)
Q Consensus 76 lP~T~tGKi~~~~~~~~~~~~~ 97 (149)
||+|+|||++ |++|+.
T Consensus 941 lP~t~~GKid------R~~L~~ 956 (1304)
T 2vsq_A 941 LPLTTNGKVN------KRLLPK 956 (1304)
T ss_dssp CCCCSSCSSC------CSCCCC
T ss_pred cCCCCCcccC------HhhcCC
Confidence 9999999999 665544
No 31
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.46 E-value=4.4e-14 Score=100.28 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=57.8
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE---e-c------CCHHHHHHHHhccccccCCC-CCCceeEE
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL---K-K------IKLFQVFTSMKRQQCIRAFL-TYKFIMAI 70 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A---~-~------~~~~~L~~~l~~~~~~~~L~-~ykvP~~v 70 (149)
+|+||||.|||++|.+||+|.++++++++++..++...+ . . .+.+++.++|++ .|. .+.+|..+
T Consensus 10 ~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~-----~l~~~~~~~~~v 84 (109)
T 3gxs_A 10 KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITR-----QLKDEILVTPRV 84 (109)
T ss_dssp TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHH-----HHHHHHSSCCEE
T ss_pred CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEEcCccccchhHHHHHHHHHHH-----HHHHhhCCceEE
Confidence 799999999999999999999999999998754333333 1 1 134567777776 554 45666689
Q ss_pred EEec--ccCCCCCCccc
Q psy8228 71 WLWK--NWTLVDVFKTQ 85 (149)
Q Consensus 71 ~~vd--~lP~T~tGKi~ 85 (149)
.+++ +||+| +||++
T Consensus 85 ~~v~~~~lPrt-sGKi~ 100 (109)
T 3gxs_A 85 KLVPKGALPKS-EGKAV 100 (109)
T ss_dssp EEECTTCSCCC----CC
T ss_pred EEECCCCccCC-CCceE
Confidence 9998 89999 99998
No 32
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.44 E-value=7.3e-14 Score=120.24 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=65.9
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-----ecCCHHHHHHHHhccccccCC-CCCCceeEEEEec-
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL-----KKIKLFQVFTSMKRQQCIRAF-LTYKFIMAIWLWK- 74 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-----~~~~~~~L~~~l~~~~~~~~L-~~ykvP~~v~~vd- 74 (149)
+|+||+|.|||++|.+||+|.+|+|++++++.......+ ...+.++++++|++ +| +.|++|..+.+++
T Consensus 467 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~l~~~~~~p~~i~~v~~ 541 (576)
T 3gqw_A 467 RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAA-----RIQSEFGVTAAIDLLPP 541 (576)
T ss_dssp TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCEEEEEECCCCCHHHHHHHHHHHHH-----HHHHHHSCCEEEEEECS
T ss_pred CCEEECHHHHHHHHHhCcccccccEEEEEcCCccEEEEEEEecCchhHHHHHHHHHHH-----HHHHHhCCceeEEEECC
Confidence 799999999999999999999999999987643222222 22335678888888 78 7899999999998
Q ss_pred -ccCCCCCCccc
Q psy8228 75 -NWTLVDVFKTQ 85 (149)
Q Consensus 75 -~lP~T~tGKi~ 85 (149)
+||+|++||++
T Consensus 542 ~~lP~t~~GKi~ 553 (576)
T 3gqw_A 542 HSIPRTSSGKPA 553 (576)
T ss_dssp SCSCBCTTSSBC
T ss_pred CCcCcCCCccch
Confidence 89999999999
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.39 E-value=1.3e-13 Score=116.27 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=66.6
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----ec--------CCHHHHHHHHhccccccCCCCC-Ccee
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL----KK--------IKLFQVFTSMKRQQCIRAFLTY-KFIM 68 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~~--------~~~~~L~~~l~~~~~~~~L~~y-kvP~ 68 (149)
+|+||+|.|||++|.+||+|.+++|++++++..++...+ .. .+.++++++|++ +|+.| ++|.
T Consensus 341 ~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~-----~l~~~~~~p~ 415 (443)
T 2y4o_A 341 RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQH-----RIKTMVGVSS 415 (443)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHH-----HHHHHTCCCC
T ss_pred CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHH-----HHHHHhCCce
Confidence 799999999999999999999999999998655444333 21 234689999998 89987 6999
Q ss_pred EEEEe--cccCCCCCCccc
Q psy8228 69 AIWLW--KNWTLVDVFKTQ 85 (149)
Q Consensus 69 ~v~~v--d~lP~T~tGKi~ 85 (149)
.+.++ ++||+|++||++
T Consensus 416 ~v~~v~~~~lP~t~~GKi~ 434 (443)
T 2y4o_A 416 GVTVLAAGGIPATATGKAR 434 (443)
T ss_dssp EEEEECTTCSCCCTTSCCC
T ss_pred EEEEeCCCcccCccCCcce
Confidence 99998 599999999999
No 34
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.38 E-value=7.3e-14 Score=121.00 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=70.7
Q ss_pred CeEEechHHHHHHH-hcCCCcc--cEEEEEEEcCCCCeeEEE-----e----cCCHHHHHHHHhccccccCCCC-CCcee
Q psy8228 2 RGENVATSEVEDAL-SKIVQLK--DAAVYGVETSALNTLGVL-----K----KIKLFQVFTSMKRQQCIRAFLT-YKFIM 68 (149)
Q Consensus 2 gGenVsp~EVE~vL-~~hP~V~--eaaVvGVpd~~~~~~~~A-----~----~~~~~~L~~~l~~~~~~~~L~~-ykvP~ 68 (149)
+|+||+|.|||++| ..||+|. +|+|+|++++. +++.++ . ..+.+++.++|++ +|+. |++|.
T Consensus 464 ~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-----~l~~~~~~p~ 537 (590)
T 3kxw_A 464 YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFE-----LVYENHQLEV 537 (590)
T ss_dssp HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHH-----HHHHHHSCCC
T ss_pred CCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHH-----HHHHHcCCce
Confidence 69999999999999 8899999 89999999865 344332 1 2456789999999 8885 89986
Q ss_pred -EEEEe--cccCCCCCCccccCCCCCCCCccccccchhhhhHHHHhc
Q psy8228 69 -AIWLW--KNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRS 112 (149)
Q Consensus 69 -~v~~v--d~lP~T~tGKi~~~~~~~~~~~~~~~~~~~~~k~~l~~~ 112 (149)
.+.++ ++||+|++||++ |+.|++.
T Consensus 538 ~~i~~v~~~~lP~t~sGKi~--------------------R~~L~~~ 564 (590)
T 3kxw_A 538 HTIVLIPLKAMPHTTSGKIR--------------------RNFCRKH 564 (590)
T ss_dssp CEEEEEETTCSCCCSCHHHH--------------------HHHHHHH
T ss_pred eEEEEECCCccCcCCCcHHH--------------------HHHHHHH
Confidence 67777 699999999999 9999876
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.38 E-value=6.7e-14 Score=117.75 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=66.3
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----e-c-----CCHHHHHHHHhccccccCCCCC-CceeEE
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL----K-K-----IKLFQVFTSMKRQQCIRAFLTY-KFIMAI 70 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~-~-----~~~~~L~~~l~~~~~~~~L~~y-kvP~~v 70 (149)
+|+||+|.|||++|.+||+|.+|+|++++++..++..++ . . .+.++++++|++ +|+.| ++|..+
T Consensus 339 ~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~-----~l~~~~~~p~~v 413 (437)
T 2y27_A 339 RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAY-----DIKSLIGVTAVI 413 (437)
T ss_dssp TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHH-----HHHHHHCCCEEE
T ss_pred CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHH-----HHHHhcCCceEE
Confidence 799999999999999999999999999998765444433 1 1 335789999999 89998 699999
Q ss_pred EEe--cccCCCCCCccc
Q psy8228 71 WLW--KNWTLVDVFKTQ 85 (149)
Q Consensus 71 ~~v--d~lP~T~tGKi~ 85 (149)
.++ ++||+|+ ||++
T Consensus 414 ~~v~~~~lP~t~-GKi~ 429 (437)
T 2y27_A 414 NVLPVNGIERSV-GKAR 429 (437)
T ss_dssp EECCTTCSCCCS-SSCC
T ss_pred EEeCCCCccCCC-Ccce
Confidence 999 5999999 9999
No 36
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.30 E-value=5.6e-13 Score=112.05 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=60.3
Q ss_pred CeEEechHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----e--cCC----HHHHHHHHhccccccCCCCC-CceeEE
Q psy8228 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL----K--KIK----LFQVFTSMKRQQCIRAFLTY-KFIMAI 70 (149)
Q Consensus 2 gGenVsp~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~--~~~----~~~L~~~l~~~~~~~~L~~y-kvP~~v 70 (149)
+|+||+|.|||++|.+||+|.+++|++++++..+....+ . ..+ .++++++|++ +|+.| ++|..+
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~-----~l~~~~~~p~~i 411 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIR-----QLKDEILVTPKV 411 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHH-----HHHHHHSSCCEE
T ss_pred CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEcCccccchhhHHHHHHHHHH-----HHHHhcCCceEE
Confidence 799999999999999999999999999998664444333 2 122 5789999999 99999 999999
Q ss_pred EEec--ccCCCCCCccc
Q psy8228 71 WLWK--NWTLVDVFKTQ 85 (149)
Q Consensus 71 ~~vd--~lP~T~tGKi~ 85 (149)
.+++ +||+|+ ||++
T Consensus 412 ~~v~~~~lP~t~-GKi~ 427 (436)
T 3qov_A 412 KLVKKGSLPQSE-GKAV 427 (436)
T ss_dssp EEECTTCCC--------
T ss_pred EEeCCCcccCcC-Ccce
Confidence 9999 999999 9998
No 37
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=51.75 E-value=32 Score=21.70 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=30.9
Q ss_pred hHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEEecCCHHHHHHHHhc
Q psy8228 8 TSEVEDALSKIVQLKDAAVYGVETSALNTLGVLKKIKLFQVFTSMKR 54 (149)
Q Consensus 8 p~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A~~~~~~~L~~~l~~ 54 (149)
..++++.|.++|.|.+|..+.-+ .+=-..+...|.+++.+++.+
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~---~D~ll~v~~~d~~~l~~~i~~ 58 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE---YDLIVKVETDTLKDLDQFITE 58 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS---CSEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCeeEEEEEccc---CCEEEEEEECCHHHHHHHHHH
Confidence 36899999999999999866321 111111256788999999876
No 38
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=49.13 E-value=32 Score=21.30 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE--ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL--KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A--~~~~~~~L~~~l~~ 54 (149)
.++++.|.++|.|.+|..+.-+ ...++ ...|.+++.+++.+
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~-----~d~l~~v~~~d~~~l~~~~~~ 58 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGV-----YDIVVKVEADSMDKLKDFVTN 58 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSS-----CSEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEEecc-----CCEEEEEEECCHHHHHHHHHH
Confidence 6899999999999998865221 11222 56688899998876
No 39
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=33.54 E-value=51 Score=21.06 Aligned_cols=44 Identities=5% Similarity=0.116 Sum_probs=29.8
Q ss_pred hHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEEecCCHHHHHHHHhc
Q psy8228 8 TSEVEDALSKIVQLKDAAVYGVETSALNTLGVLKKIKLFQVFTSMKR 54 (149)
Q Consensus 8 p~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A~~~~~~~L~~~l~~ 54 (149)
..++++.|.++|.|.+|..+.-+ .+--..+...|.+++.+++.+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~---~D~ll~v~~~d~~~l~~~l~~ 58 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP---YDLVALVRLKDVEELDDVVTQ 58 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS---SSEEEEEEESSGGGHHHHCCC
T ss_pred HHHHHHHHhcCCCeEEEEEeecC---CCEEEEEEECCHHHHHHHHHH
Confidence 46889999999999999866221 111111255677888888866
No 40
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=30.73 E-value=35 Score=20.17 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=28.1
Q ss_pred hHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----ecCCHHHHHHHHhc
Q psy8228 8 TSEVEDALSKIVQLKDAAVYGVETSALNTLGVL----KKIKLFQVFTSMKR 54 (149)
Q Consensus 8 p~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~~~~~~~L~~~l~~ 54 (149)
...||+.|.++|+|..+.|-- . .+.+.+ ...+.++|.+.+.+
T Consensus 17 ~~~ie~~l~~~~gv~~~~v~~----~-~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 17 SNSVEAALMNVNGVFKASVAL----L-QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEEG----G-GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEEe----c-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999998876531 1 122222 23578888888876
No 41
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=28.24 E-value=40 Score=19.52 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=28.4
Q ss_pred hHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE---ecCCHHHHHHHHhc
Q psy8228 8 TSEVEDALSKIVQLKDAAVYGVETSALNTLGVL---KKIKLFQVFTSMKR 54 (149)
Q Consensus 8 p~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A---~~~~~~~L~~~l~~ 54 (149)
...||+.|.+.|+|.++.|- -..+...+ ...+.++|.+.+.+
T Consensus 17 ~~~i~~~l~~~~gv~~~~v~-----~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 17 ASSIERAIAKVPGVQSCQVN-----FALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp HHHHHHHHHTSTTEEEEEEE-----TTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEEE-----ecCCEEEEEECCCCCHHHHHHHHHH
Confidence 35799999999999887653 11222222 45678888888866
No 42
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=27.00 E-value=48 Score=18.84 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL-KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-~~~~~~~L~~~l~~ 54 (149)
..||+.|.+.|+|.++.|- ...+.... ...+.+++.+.+..
T Consensus 16 ~~i~~~l~~~~gv~~~~v~-----~~~~~~~v~~~~~~~~i~~~i~~ 57 (66)
T 2roe_A 16 MAVTKALKKVPGVEKVEVS-----LEKGEALVEGTADPKALVQAVEE 57 (66)
T ss_dssp HHHHHHHHTSTTCCCEEEC-----SSSCBEEECSCCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCeEEEEEE-----eCCCEEEECCCCCHHHHHHHHHH
Confidence 5699999999999886642 11122222 34567778877765
No 43
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=24.74 E-value=48 Score=18.76 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE---ecCCHHHHHHHHhc
Q psy8228 8 TSEVEDALSKIVQLKDAAVYGVETSALNTLGVL---KKIKLFQVFTSMKR 54 (149)
Q Consensus 8 p~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A---~~~~~~~L~~~l~~ 54 (149)
...||+.|.+.|+|.++.|- .. .+.... ...+.+++...+..
T Consensus 15 ~~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 15 AAHVKEALEKVPGVQSALVS----YP-KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp HHHHHHHHHHSTTEEEEEEE----TT-TTEEEEEECTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeeEEEEE----cc-CCEEEEEECCCCCHHHHHHHHHH
Confidence 35799999999999876642 11 222222 23567788877765
No 44
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=23.87 E-value=58 Score=18.33 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE---ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL---KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A---~~~~~~~L~~~l~~ 54 (149)
..||+.|.+.++|.++.|- .. .+...+ ...+.+++.+.+..
T Consensus 19 ~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 19 SSIERAIAKVPGVQSCQVN----FA-LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp HHHHHHHHTSTTEEEEEEE----TT-TTEEEEEEC---CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEEE----cc-CCEEEEEECCCCCHHHHHHHHHH
Confidence 5699999999999876642 11 222221 23566777776654
No 45
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=23.81 E-value=58 Score=18.12 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL----KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~~~~~~~L~~~l~~ 54 (149)
..||+.|.+.|+|.++.|- .. .+.... ...+.+++.+.+..
T Consensus 16 ~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 16 ARIEEAVGRISGVKKVKVQ----LK-KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp HHHHHHHHTSTTEEEEEEE----TT-TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCeEEEEEE----ec-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999876642 11 222222 23567778877755
No 46
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=23.77 E-value=46 Score=19.69 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHHhcCC-CcccEEEEEEEcCCCCeeEEE-ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIV-QLKDAAVYGVETSALNTLGVL-KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP-~V~eaaVvGVpd~~~~~~~~A-~~~~~~~L~~~l~~ 54 (149)
.-||+.|.+.| ||.++.|- -. .+.... ...+.+++.+.+.+
T Consensus 20 ~~ie~~l~~~~~GV~~~~v~----~~-~~~~~v~~~~~~~~i~~~i~~ 62 (73)
T 1cc8_A 20 GAVNKVLTKLEPDVSKIDIS----LE-KQLVDVYTTLPYDFILEKIKK 62 (73)
T ss_dssp HHHHHHHHTTTTSEEEEEEE----TT-TTEEEEEESSCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCceEEEEE----CC-CCEEEEEEeCCHHHHHHHHHH
Confidence 56999999999 99886652 11 222222 45678888888866
No 47
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.55 E-value=1.8e+02 Score=19.94 Aligned_cols=43 Identities=5% Similarity=-0.089 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEEecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVLKKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A~~~~~~~L~~~l~~ 54 (149)
.++.+.|.++|.|.+|..+.- .++--..+...|.+++.+++.+
T Consensus 83 ~~~~~~l~~~peV~~~~~vtG---~~d~~~~v~~~d~~~l~~~l~~ 125 (152)
T 2cg4_A 83 PSALAKLESLDEVTEAYYTTG---HYSIFIKVMCRSIDALQHVLIN 125 (152)
T ss_dssp HHHHHHHHTCTTEEEEEEESS---SCSEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCcCeEEEEEEec---ccCEEEEEEECCHHHHHHHHHH
Confidence 578999999999999987621 1111122256688899998876
No 48
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=23.54 E-value=56 Score=18.51 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL----KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~~~~~~~L~~~l~~ 54 (149)
..||+.|.++++|.++.|- .. .+...+ ...+.+++.+.+..
T Consensus 21 ~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 21 NAIESSVKELNGVEQVKVQ----LA-EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp HHHHHHHHTSTTEEEEEEE----TT-TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEE----ec-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999876642 11 222221 23567777776654
No 49
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=23.44 E-value=22 Score=24.78 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=13.7
Q ss_pred chHHHHHHHhc---CCCcccEEEE
Q psy8228 7 ATSEVEDALSK---IVQLKDAAVY 27 (149)
Q Consensus 7 sp~EVE~vL~~---hP~V~eaaVv 27 (149)
|+.|||+.|.+ ||+|....|+
T Consensus 10 ~~~evEe~l~RI~~~kgV~G~iIl 33 (106)
T 2hz5_A 10 SMAEVEETLKRLQSQKGVQGIIVV 33 (106)
T ss_dssp -----CHHHHHHHTSTTEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEE
Confidence 68899999865 5999998888
No 50
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=23.32 E-value=56 Score=18.07 Aligned_cols=41 Identities=10% Similarity=0.006 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE---ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL---KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A---~~~~~~~L~~~l~~ 54 (149)
..||+.|.++|+|..+.|= .. .+.... ...+.+++.+.+..
T Consensus 17 ~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 17 DKIEKFVGEIEGVSFIDVS----VE-KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp HHHHHHHTTSSSEEEEEEE----TT-TTEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEEE----cC-CCEEEEEECCCCCHHHHHHHHHH
Confidence 5699999999999876542 11 222222 22366777776654
No 51
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=23.07 E-value=63 Score=18.28 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL----KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~~~~~~~L~~~l~~ 54 (149)
..||+.|.++++|.++.|- .. .+.... ...+.+++.+.+..
T Consensus 19 ~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1aw0_A 19 QSIEGVISKKPGVKSIRVS----LA-NSNGTVEYDPLLTSPETLRGAIED 63 (72)
T ss_dssp HHHHHHHHTSTTCCCEEEE----TT-TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEEE----cc-CCEEEEEECCCcCCHHHHHHHHHH
Confidence 5699999999999887653 11 222222 23466777776654
No 52
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=22.90 E-value=63 Score=17.68 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL----KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~~~~~~~L~~~l~~ 54 (149)
..||+.|...++|.++.|- .. .+...+ ...+.+++.+.+..
T Consensus 18 ~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 18 KAVETSVGELDGVSAVHVN----LE-AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp HHHHHHHHTSTTEEEEEEE----TT-TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeeEEEEE----ec-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999876632 11 222222 23566777776654
No 53
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=22.44 E-value=63 Score=18.25 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL----KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~~~~~~~L~~~l~~ 54 (149)
..||+.|.+.++|.++.|- .. .+.... ...+.+++.+.+..
T Consensus 19 ~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 19 ITVKKAISKVEGVSKVDVT----FE-TRQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp HHHHHHHHTSTTEEEEEEE----TT-TTEEEEEEETTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEEE----ec-CCEEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999876642 11 222222 23567778777765
No 54
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=22.03 E-value=39 Score=18.66 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE-ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL-KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A-~~~~~~~L~~~l~~ 54 (149)
..||+.|.+.|+|.++.|- ...+.... ...+.+++.+.+..
T Consensus 17 ~~i~~~l~~~~gv~~~~v~-----~~~~~~~v~~~~~~~~i~~~i~~ 58 (64)
T 2xmm_A 17 EAVTKAVQNEDAQATVQVD-----LTSKKVTITSALGEEQLRTAIAS 58 (64)
T ss_dssp HHHHHHHHHHCTTCEEEEC-----TTTCEEEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEE-----ecCCEEEEEecCCHHHHHHHHHH
Confidence 5699999999999876641 11222222 34567777776654
No 55
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=21.30 E-value=65 Score=18.59 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCCcccEEE
Q psy8228 9 SEVEDALSKIVQLKDAAV 26 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaV 26 (149)
..||+.|.+.|+|.++.|
T Consensus 19 ~~ie~~l~~~~gV~~~~v 36 (73)
T 1mwy_A 19 RKVENAVRQLAGVNQVQV 36 (73)
T ss_dssp HHHHHHHHTSSSEEEEEE
T ss_pred HHHHHHHhcCCCeeEEEE
Confidence 569999999999987664
No 56
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=20.72 E-value=64 Score=18.56 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.6
Q ss_pred hHHHHHHHhcCCCcccEEE
Q psy8228 8 TSEVEDALSKIVQLKDAAV 26 (149)
Q Consensus 8 p~EVE~vL~~hP~V~eaaV 26 (149)
...||+.|.+.++|.++.|
T Consensus 18 ~~~ie~~l~~~~gv~~~~v 36 (71)
T 2aj0_A 18 AAKFERNVKEIEGVTEAIV 36 (71)
T ss_dssp HHHHHHHHHHSTTEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEE
Confidence 3579999999999987664
No 57
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=20.56 E-value=72 Score=18.36 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCcccEEEEEEEcCCCCeeEEE----ecCCHHHHHHHHhc
Q psy8228 9 SEVEDALSKIVQLKDAAVYGVETSALNTLGVL----KKIKLFQVFTSMKR 54 (149)
Q Consensus 9 ~EVE~vL~~hP~V~eaaVvGVpd~~~~~~~~A----~~~~~~~L~~~l~~ 54 (149)
..||+.|.++|+|.++.|- .. .+...+ ...+.+++.+.+..
T Consensus 18 ~~i~~~l~~~~gv~~~~v~----~~-~~~~~v~~~~~~~~~~~i~~~i~~ 62 (75)
T 3cjk_B 18 WTIEQQIGKVNGVHHIKVS----LE-EKNATIIYDPKLQTPKTLQEAIDD 62 (75)
T ss_dssp HHHHHHHHTSTTEEEEEEE----TT-TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEEE----ec-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999876642 11 222222 23567778877765
Done!