RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8228
(149 letters)
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 56.4 bits (137), Expect = 3e-10
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
W+GENVAT+EVE+ALS +++A VYGVE
Sbjct: 467 WKGENVATTEVENALSGFPGVEEAVVYGVE 496
Score = 34.1 bits (79), Expect = 0.016
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 74 KNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
+L DVF+ A+HP++PAL ++Q++S+ E
Sbjct: 35 SKRSLGDVFEEAAARHPDRPALLFEDQSISYAE 67
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 54.7 bits (132), Expect = 2e-09
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
W+GENV+T+EVE LS ++ L+D VYGVE
Sbjct: 377 WKGENVSTTEVEGILSNVLGLEDVVVYGVE 406
Score = 27.0 bits (60), Expect = 4.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 122 PEEPGILIGMIKESRAESHFNG 143
P EPG+L+G I ++ F+G
Sbjct: 307 PGEPGLLVGKIIQNDPLRRFDG 328
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 51.1 bits (123), Expect = 3e-08
Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
W+GENV+T+EVE+ L+K +++A VYGVE
Sbjct: 346 WKGENVSTTEVEEVLAKHPGVEEANVYGVE 375
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 44.7 bits (106), Expect = 5e-06
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVLKKIKLF--QVFTSMKRQQCI 58
W+GENVAT+EV D L+ + +++ VYGV + + L F K Q +
Sbjct: 412 WKGENVATTEVADILTMVDFIQEVNVYGVTVPGHEGRAGMAAVILKPGTEFDLEKLYQHV 471
Query: 59 RAFL 62
R FL
Sbjct: 472 REFL 475
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 42.1 bits (99), Expect = 3e-05
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGV 29
W+ ENV+T EV D L I + +A VYGV
Sbjct: 366 WKSENVSTGEVADVLGAIPSVAEANVYGV 394
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 36.3 bits (84), Expect = 0.004
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+ E+E L++ + +AAV GV
Sbjct: 429 SGGENIYPEEIEAVLAEHPAVAEAAVVGV 457
Score = 29.0 bits (65), Expect = 1.0
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 67 IMAIWLWKNWTLVDVFKTQVAKHPNKPALKHD--EQTMSFQE 106
+ + TL + + ++P++PAL ++++E
Sbjct: 2 NRLMRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRE 43
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 36.0 bits (84), Expect = 0.004
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 2 RGENVATSEVEDALSKIVQLKDAAVYGV 29
RGEN+++ EVE A+ + +AAV V
Sbjct: 331 RGENISSYEVEAAILAHPAVAEAAVVAV 358
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 35.8 bits (83), Expect = 0.004
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAV 26
RGE + E+E L + + +AAV
Sbjct: 387 IRGERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 36.0 bits (84), Expect = 0.004
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+ +E+E+AL + +AAV GV
Sbjct: 258 GENIYPAEIEEALLTHPAVAEAAVVGV 284
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 35.3 bits (82), Expect = 0.006
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 73 WKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
W + TL D+ A+HP++ A+ + ++++E
Sbjct: 12 WGDQTLGDLLAANAARHPDRTAVVDGPRRLTYRE 45
Score = 32.2 bits (74), Expect = 0.084
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVE 30
GE ++ E+E+ L + DAAV G+
Sbjct: 394 GEKISPEEIENLLLSHPAVADAAVVGMP 421
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 35.2 bits (81), Expect = 0.008
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+A+SEVE + ++ ++ +AAV GV
Sbjct: 403 GENIASSEVERVIYELPEVAEAAVIGV 429
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 35.0 bits (81), Expect = 0.010
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
GENV +EVE L + + +AAV GV
Sbjct: 252 VGGENVYPAEVESVLLQHPAVAEAAVVGVP 281
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 34.9 bits (81), Expect = 0.011
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+++ EVE L K + +AAV
Sbjct: 431 GENISSIEVEGVLYKHPAVLEAAVVAR 457
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 34.5 bits (80), Expect = 0.013
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVE 30
GENV +EVED L+ + +AAV GV+
Sbjct: 457 GENVFPAEVEDLLAGHPDVVEAAVIGVD 484
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 34.4 bits (80), Expect = 0.014
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+ +EVE+ L + D AV GV
Sbjct: 253 GENIYPAEVENVLLAHPAVADVAVIGV 279
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 34.5 bits (80), Expect = 0.014
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GENVA+ EVE+AL + + AV G+
Sbjct: 425 GENVASREVEEALYTHPAVAEVAVIGL 451
Score = 31.1 bits (71), Expect = 0.17
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 76 WTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
T+ D+ + ++P+K AL +++ ++ E
Sbjct: 11 QTIGDILRRSARRYPDKTALVFGDRSWTYAE 41
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 33.6 bits (78), Expect = 0.022
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 78 LVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
L D+ + + P++PAL + +++ E
Sbjct: 1 LADLLERAARRFPDRPALTFFGRKLTYAE 29
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 32.7 bits (75), Expect = 0.051
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
G NV +EVE+ L + ++DAAV G+
Sbjct: 475 GFNVYPAEVEEVLREHPGVEDAAVVGL 501
Score = 30.4 bits (69), Expect = 0.34
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 77 TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
TLVD++ VA+ ++PAL T ++ E
Sbjct: 33 TLVDLYDNAVARFGDRPALDFFGATTTYAE 62
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 32.6 bits (75), Expect = 0.058
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVE 30
GEN+ +E+E+ L + +A V GV
Sbjct: 390 GENIYPAEIEEVLLSHPGVAEAGVVGVP 417
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 32.4 bits (74), Expect = 0.061
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 73 WKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
W++ TL D+ A++P++ A+ E+ +S+ E
Sbjct: 25 WQDRTLTDILTDHAARYPDRIAVIDGERRLSYAE 58
Score = 27.4 bits (61), Expect = 3.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVETSAL 34
GE +A EVE+ L + + DAA+ + L
Sbjct: 444 GEKIAAEEVENLLLRHPAVHDAALVAMPDELL 475
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 32.0 bits (73), Expect = 0.097
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+ T+ +E L + + AVY V
Sbjct: 411 GENLGTAPIERILLRYPDATEVAVYAV 437
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 32.1 bits (74), Expect = 0.098
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+ E+EDAL + + AV GV
Sbjct: 425 GENIYPRELEDALYGHPAVAEVAVIGV 451
Score = 26.7 bits (60), Expect = 4.8
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 76 WTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
T+ + + KHP+K A+ D + ++ E
Sbjct: 6 LTIGRILRHGARKHPDKEAVYFDGRRTTYAE 36
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 32.0 bits (73), Expect = 0.100
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GENV+ E+E+ ++ +++D V G+
Sbjct: 428 GENVSCVELENIIATHPKIQDIVVVGI 454
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 31.7 bits (72), Expect = 0.12
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 2 RGENVATSEVEDALSKIVQLKDAAVYGVET 31
RGEN+++ EVE L + AAV+ V +
Sbjct: 429 RGENISSFEVEQVLLSHPAVAAAAVFPVPS 458
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 31.3 bits (71), Expect = 0.16
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 82 FKTQVAKHPNKPALKHDEQTMSFQECILKRSGFNENAFYFPEE---PGILIGMIKE 134
+ Q +HP +PAL EQ +S+ E L R N A P +L+G+ E
Sbjct: 518 IEAQARQHPERPALVFGEQVLSYAE--LNRQA-NRLAHVLIAAGVGPDVLVGIAVE 570
Score = 27.0 bits (60), Expect = 4.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 82 FKTQVAKHPNKPALKHDEQTMSFQE 106
+ Q A P AL EQ +++ E
Sbjct: 1580 IEDQAAATPEAVALVFGEQELTYGE 1604
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 31.0 bits (71), Expect = 0.20
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN++ E+ED L + + + AV +
Sbjct: 346 GENISAREIEDLLLRHPAVAEVAVVAM 372
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 30.6 bits (70), Expect = 0.27
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVE 30
GEN+ E+E L + +++AAV GV
Sbjct: 318 GENIYPEEIEAVLLQHPAVEEAAVVGVP 345
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 30.4 bits (69), Expect = 0.30
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 77 TLVDVFKTQVAKHPNKPALKHDEQTMSF 104
+LVD+F+ VA++ ++PA + + M+F
Sbjct: 24 SLVDMFEQAVARYADQPAFINMGEVMTF 51
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 30.3 bits (69), Expect = 0.30
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GE ++ EVE+ L + + +A V+GV
Sbjct: 255 GEKISPREVEEVLLRHPAVAEAVVFGV 281
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 30.4 bits (69), Expect = 0.36
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 77 TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
TL + Q AK P+ PAL S++E
Sbjct: 459 TLSALVAQQAAKTPDAPALADARYQFSYRE 488
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 30.1 bits (68), Expect = 0.38
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 73 WKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
W++ L D+ + Q A++P+ A+ + S++E
Sbjct: 20 WQDKPLTDILRDQAARYPDAIAIICGNRQWSYRE 53
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 29.9 bits (68), Expect = 0.40
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 2 RGENVATSEVEDALSKIVQLKDAAVYGVE 30
RG V+ +E+E+ + + +AAV GV
Sbjct: 260 RGYRVSPTEIEEVICAHPLVAEAAVIGVP 288
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 29.8 bits (67), Expect = 0.54
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 77 TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
TL +F Q A+ P PAL QT+S+ E
Sbjct: 2189 TLHGLFAAQAARTPQAPALTFAGQTLSYAE 2218
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 29.9 bits (67), Expect = 0.58
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 82 FKTQVAKHPNKPALKHDEQTMSFQECILKRSGFNENAFYFPEE---PGILIGMIKESRAE 138
+ P+ A+ DE+ +++ E L R N A P +L+G+ E AE
Sbjct: 4557 VAERARMTPDAVAVVFDEEKLTYAE--LNRRA-NRLAHALIARGVGPEVLVGIAMERSAE 4613
Score = 29.5 bits (66), Expect = 0.83
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 81 VFKTQVAKHPNKPALKHDEQTMSFQECILKRSGFNENAFYFPEE---PGILIGMIKESRA 137
+F+ QV + P PAL E+T+ + E L R N A E P +L+G+ E
Sbjct: 516 LFEEQVERTPEAPALAFGEETLDYAE--LNRRA-NRLAHALIERGVGPDVLVGVAMERSI 572
Query: 138 E 138
E
Sbjct: 573 E 573
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 29.3 bits (66), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVE 30
GENV EVE L+ + +AAV GV+
Sbjct: 446 GENVYPIEVEKTLATHPDVAEAAVIGVD 473
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 29.3 bits (66), Expect = 0.80
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVETS 32
GEN+ E+E L + +++A V +
Sbjct: 350 GENIYPEEIETVLYQHPGIQEAVVVPKPDA 379
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 29.1 bits (66), Expect = 0.86
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 67 IMAIWLWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
I + W W++W V P AL+ +++ +++Q+
Sbjct: 3 IFSDWPWRHWAQV---------RPQAIALRLNDEVLTWQQ 33
>gnl|CDD|116972 pfam08392, FAE1_CUT1_RppA, FAE1/Type III polyketide synthase-like
protein. The members of this family are described as
3-ketoacyl-CoA synthases, type III polyketide synthases,
fatty acid elongases and fatty acid condensing enzymes,
and are found in both prokaryotic and eukaryotic (mainly
plant) species. The region featured in this family
contains the active site residues, as well as motifs
involved in substrate binding.
Length = 290
Score = 29.1 bits (66), Expect = 0.90
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 98 DEQTMSFQECILKRSGFNE------NAFYFPEEPGILIGMIKESRAESH 140
DE+++ FQ IL+RSG E + P P + E+R E+
Sbjct: 41 DEESLDFQRKILERSGLGEETYVPRSVLEIPPNPT-----MAEAREEAE 84
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 28.9 bits (65), Expect = 1.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYG 28
GEN+++ EVED L + ++ DA V
Sbjct: 440 GENISSREVEDILLQHPKIHDACVVA 465
Score = 28.2 bits (63), Expect = 1.9
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 72 LWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSF 104
W + +L D ++ P+K A+ D S+
Sbjct: 19 YWGDASLADYWQQTARAMPDKIAVV-DNHGASY 50
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 28.7 bits (65), Expect = 1.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
G V+ E+E+AL + + + AV GV
Sbjct: 345 GYKVSALEIEEALLEHPGVAEVAVIGV 371
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 28.8 bits (64), Expect = 1.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 77 TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
T+ +F+ Q A P+ AL Q +++ E
Sbjct: 228 TIHLLFEEQAATTPDAVALVRGGQQLTYAE 257
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 28.5 bits (64), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVE 30
G+ V+ EVE AL + + +AAV V
Sbjct: 344 GQWVSPLEVEAALGEHPAVAEAAVVAVP 371
>gnl|CDD|184756 PRK14584, hmsS, hemin storage system protein; Provisional.
Length = 153
Score = 27.9 bits (62), Expect = 1.5
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 62 LTYKFIMAI--WLWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSF---QECILKRSGFNE 116
Y I A L W + + QV + ++P L DE SF E I + +
Sbjct: 64 ALYLAIAAFNAVLLIIWAKYNQVRFQVERRGHRPDLDDDELASSFALSPELIAQLKSGSC 123
Query: 117 NAFYFPEEPGILIGMIKES 135
Y +E G +I +KE
Sbjct: 124 LTLYN-DEHGHIID-VKEG 140
>gnl|CDD|166018 PLN02377, PLN02377, 3-ketoacyl-CoA synthase.
Length = 502
Score = 28.1 bits (62), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 98 DEQTMSFQECILKRSGFNENAFYFPE 123
D+ ++ FQ IL+RSG E+ Y PE
Sbjct: 130 DDSSLEFQRKILERSGLGEDT-YVPE 154
>gnl|CDD|215123 PLN02192, PLN02192, 3-ketoacyl-CoA synthase.
Length = 511
Score = 28.0 bits (62), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 99 EQTMSFQECILKRSGFNENAFYFPE 123
E+ + FQ IL+RSG E+ Y PE
Sbjct: 135 EENLEFQRKILERSGLGEST-YLPE 158
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 28.0 bits (63), Expect = 2.2
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 12/59 (20%)
Query: 86 VAKHPNKPALKHDEQTMSFQE---------CILKRSGFNENAF---YFPEEPGILIGMI 132
HP+ A+ + ++++ E L G P + + ++
Sbjct: 2 AQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAIL 60
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 27.7 bits (62), Expect = 2.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 3 GENVATSEVEDAL--SKIVQLKDAAVYGV 29
GENV +EVE A+ + +VQ D V G+
Sbjct: 354 GENVYPAEVEAAILATGLVQ--DVCVLGL 380
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate,
for dehydrogenation and then degradation by a pathway
also used in benzoyl-CoA degradation in
Rhodopseudomonas palustris.
Length = 538
Score = 27.6 bits (61), Expect = 2.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 69 AIWLWKNWTLVDVFKTQVAKHPNKPAL 95
A LW++ T+ D F VA P+KPAL
Sbjct: 15 AAGLWRDRTINDHFDAAVANCPDKPAL 41
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 27.5 bits (62), Expect = 2.9
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 76 WTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
W + D+F+ P++ AL ++ +++ E
Sbjct: 3 WNIADLFEAVADAVPDRVALVCGDRRLTYAE 33
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 27.6 bits (61), Expect = 2.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVE 30
G + T+EVE AL Q +AAV G+E
Sbjct: 543 GHRIGTAEVESALVSHPQCAEAAVVGIE 570
>gnl|CDD|185319 PRK15421, PRK15421, DNA-binding transcriptional regulator MetR;
Provisional.
Length = 317
Score = 27.3 bits (60), Expect = 3.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 74 KNWTLVDV-FKTQVAKHPNKPALKHDEQTMSFQECILKRSGFN 115
KNW V++ FK+ V P +PAL+ E + IL RSG +
Sbjct: 113 KNWPQVEMDFKSGVTFDP-QPALQQGELDLVMTSDILPRSGLH 154
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 27.0 bits (61), Expect = 4.2
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 108 ILKRSGFNENAFYFPEEPGILIGMIKESR--AESHFNGPFIVT 148
IL++SG F FP E G +G E R AE HF P VT
Sbjct: 303 ILQKSGKK---FEFPVEWGDDLGSEHE-RYLAEEHFKKPVFVT 341
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nek6/7 subfamily is part of a family of
11 different Neks (Nek1-11) that are involved in cell
cycle control. The Nek family is part of a larger
superfamily that includes the catalytic domains of
other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 and Nek7
are the shortest Neks, consisting only of the catalytic
domain and a very short N-terminal extension. They show
distinct expression patterns and both appear to be
downstream substrates of Nek9. They are required for
mitotic spindle formation and cytokinesis. They may
also be regulators of the p70 ribosomal S6 kinase.
Length = 267
Score = 27.0 bits (60), Expect = 4.3
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 16 SKIVQLKDAAVYGVETSALNTLGVLKKIKLFQVFTSMKRQQCIR 59
KI + + + VY + LKK+++F++ + RQ C++
Sbjct: 8 KKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLK 51
>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases. This family is
predominantly composed of glycerol kinase (GK) and
similar carbohydrate kinases including rhamnulokinase
(RhuK), xylulokinase (XK), gluconokinase (GntK),
ribulokinase (RBK), and fuculokinase (FK). These enzymes
catalyze the transfer of a phosphate group, usually from
ATP, to their carbohydrate substrates. The monomer of
FGGY proteins contains two large domains, which are
separated by a deep cleft that forms the active site.
One domain is primarily involved in sugar substrate
binding, and the other is mainly responsible for ATP
binding. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Substrate-induced conformational changes and a divalent
cation may be required for the catalytic activity.
Length = 435
Score = 26.9 bits (60), Expect = 4.4
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 98 DEQTMSFQECILKRSGFNENAFYFPEEPGILIGMIKESRAES 139
D QT + +L+ +G PG + G I A
Sbjct: 180 DIQTRDWDPELLEAAGIPRELLPEVVPPGEVAGAISAEAAAL 221
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 26.8 bits (60), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 3 GENVATSEVEDALSKIVQLKDAAV 26
GEN+++ EVED L + + AAV
Sbjct: 446 GENISSIEVEDVLYRHPAVLVAAV 469
>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine
triphosphatases (GTPases). Rho2 is a fungal GTPase that
plays a role in cell morphogenesis, control of cell wall
integrity, control of growth polarity, and maintenance
of growth direction. Rho2 activates the protein kinase C
homolog Pck2, and Pck2 controls Mok1, the major (1-3)
alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2
regulates the construction of the cell wall. Unlike
Rho1, Rho2 is not an essential protein, but its
overexpression is lethal. Most Rho proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for proper intracellular localization via
membrane attachment. As with other Rho family GTPases,
the GDP/GTP cycling is regulated by GEFs (guanine
nucleotide exchange factors), GAPs (GTPase-activating
proteins) and GDIs (guanine nucleotide dissociation
inhibitors).
Length = 190
Score = 26.7 bits (59), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 120 YFPEEPGILIGMIKESRAESHFNG 143
Y P P IL+G+ K+ R E+ G
Sbjct: 102 YCPNVPVILVGLKKDLRQEAVAKG 125
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 26.7 bits (59), Expect = 5.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVETSAL 34
GENV EVE LS+ + V GV S L
Sbjct: 444 GENVYPEEVEAVLSQHPGVASVVVVGVPDSRL 475
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 26.7 bits (60), Expect = 5.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYG 28
G+N+A +E+AL + A V G
Sbjct: 342 GKNIAPQPIENALKASPYISQAVVVG 367
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 26.7 bits (59), Expect = 5.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+ SEVE L + + + V G+
Sbjct: 406 GENIHPSEVERVLGRAPGVTEVVVIGL 432
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 26.7 bits (59), Expect = 6.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVL 40
GENV +E+E L+ +++ AV G+ + +G L
Sbjct: 391 GENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYL 428
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 26.7 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 3 GENVATSEVEDALSKIVQLKDAAVYGV 29
GEN+ EVE ++K+ + + AV G
Sbjct: 401 GENIYPLEVEQVINKLSDVYEVAVVGR 427
>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
clpA. [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 730
Score = 26.5 bits (59), Expect = 6.7
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 2 RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVLKKIKLF-------QVFTSMKR 54
+ NV ++E+ ++K+ ++ V + L L K K+F Q+ +++KR
Sbjct: 412 KKANVNVKDIENVVAKMAKIPVKTVSSDDREQLKNLEKNLKAKIFGQDEAIDQLVSAIKR 471
>gnl|CDD|144848 pfam01407, Gemini_AL3, Geminivirus AL3 protein. Geminiviruses
are small, ssDNA-containing plant viruses.
Geminiviruses contain three ORFs (designated AL1, AL2,
and AL3) that overlap and are specified by multiple
polycistronic mRNAs. The AL3 protein comprises
approximately 0.05% of the cellular proteins and is
present in the soluble and organelle fractions. AL3 may
form oligomers. Immunoprecipitation of AL3 in a
baculovirus expression system extracts expressing both
AL1 pfam00799 and AL3 showed that the two proteins also
complex with each other. The AL3 protein is involved in
viral replication.
Length = 120
Score = 25.5 bits (57), Expect = 7.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 60 AFLTYKFIMAIW---LWKNWTLVDVFKTQVAKHPNK 92
FL ++ IW + + VFKTQV K+ +
Sbjct: 64 CFLNFR----IWTTLRPQTGRFLRVFKTQVLKYLDN 95
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II
[Transcription / DNA replication, recombination, and
repair].
Length = 442
Score = 26.2 bits (58), Expect = 9.0
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 7 ATSEVEDA--LSKIVQLKDAAVYGVETSALNTLGVLKKIKLFQVFTSMKRQ 55
AT E ED + + L VY V L G L K ++ ++
Sbjct: 181 ATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTED 231
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 26.3 bits (58), Expect = 9.1
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 77 TLVDVFKTQVAKHPNKPAL--KHDEQTMSFQE 106
T+ D F VA+ P++ AL +H ++++
Sbjct: 19 TIGDAFDATVARFPDREALVVRHQALRYTWRQ 50
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 25.9 bits (58), Expect = 9.3
Identities = 4/17 (23%), Positives = 12/17 (70%)
Query: 90 PNKPALKHDEQTMSFQE 106
P+ A+ +Q+++++E
Sbjct: 1 PDAVAVVFGDQSLTYRE 17
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,370,397
Number of extensions: 634900
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 91
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)