RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8228
         (149 letters)



>3o83_A Peptide arylation enzyme; ligase, adenylation of
           2,3-dihydroxybenzoate and transfer to pantetheine
           cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
           baumannii} PDB: 3o82_A* 3o84_A*
          Length = 544

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 72  LWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
            W +  L  +    V  HP+  A+   E+ +S+ E
Sbjct: 26  YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIE 60



 Score = 31.0 bits (71), Expect = 0.12
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           GE +A+ E+E  +    ++  AA+  +
Sbjct: 446 GEKIASEEIEKLILLHPEVMHAALVAI 472


>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
           synthetase, antibiotic biosynthesis, siderophore
           formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
           e.23.1.1 PDB: 1md9_A* 1mdf_A
          Length = 539

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 72  LWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
            W   T  D+ + + AK+ ++ A+       S++E
Sbjct: 21  CWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRE 55



 Score = 31.0 bits (71), Expect = 0.11
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           GE VA  EVE+ L     + DAA+  +
Sbjct: 437 GEKVAAEEVENHLLAHPAVHDAAMVSM 463


>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
           ligase phosphoprotein, TER module, phosphopantetheine;
           2.60A {Bacillus subtilis}
          Length = 1304

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 77  TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
            L   FK  V  +P+ PAL +  QT+S++E
Sbjct: 465 PLTYWFKEAVNANPDAPALTYSGQTLSYRE 494


>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
           non-ribosomal peptide synthetase, NRPS, adenylation
           domain, D-alanylation; HET: AMP; 2.28A {Bacillus
           subtilis} PDB: 3e7x_A*
          Length = 511

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 77  TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
            L+   +T    +P   A +   Q++++QE
Sbjct: 2   KLLHAIQTHAETYPQTDAFRSQGQSLTYQE 31


>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
           domain, adenylation, D-alanine protein ligase, ATP
           complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
           3dhv_A*
          Length = 512

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 4/30 (13%), Positives = 16/30 (53%)

Query: 77  TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
            L++  +   A+ P++ A    +  +++++
Sbjct: 2   KLLEQIEKWAAETPDQTAFVWRDAKITYKQ 31


>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
           genomics, DLTA, ATP-binding, cytoplasm,
           nucleotide-binding; 2.41A {Streptococcus pyogenes
           serotype M6} PDB: 3lgx_A*
          Length = 521

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 2/30 (6%), Positives = 10/30 (33%)

Query: 77  TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
            ++D  +       + P      +  ++ +
Sbjct: 5   DMIDSIEQFAQTQADFPVYDCLGERRTYGQ 34


>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
           forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
           SCOP: e.23.1.1
          Length = 563

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 74  KNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
           ++ T+  +F+ QV+K PN  A+  + + +++ E
Sbjct: 37  RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHE 69


>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
           protei ribosomal peptide synthetase, NRPS, valine
           adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
           aeruginosa} PDB: 4dg9_A*
          Length = 620

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 7/30 (23%), Positives = 17/30 (56%)

Query: 77  TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
           T+V  F    A HP++ A++    ++ +++
Sbjct: 28  TVVARFSEMAALHPHREAIRDRFGSVDYRQ 57


>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
           PSI-2, protein S initiative, fatty acid synthesis; HET:
           GOL; 2.00A {Rhodopseudomonas palustris}
          Length = 509

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           GENV  +EVE AL +   + DA V GV
Sbjct: 407 GENVYPAEVEGALKQHPAIADAVVIGV 433



 Score = 34.4 bits (80), Expect = 0.008
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 75  NWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
           ++TL DV++   A  P++ A   D   ++ ++
Sbjct: 5   DFTLADVYRRNAALFPDRTAFMVDGVRLTHRD 36


>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
           ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
           PDB: 3t5c_A 3t5b_A
          Length = 517

 Score = 35.2 bits (82), Expect = 0.005
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           GENV  +E+E  +  +  + + AV G+
Sbjct: 420 GENVYPAEIESVIIGVPGVSEVAVIGL 446



 Score = 29.1 bits (66), Expect = 0.57
 Identities = 3/32 (9%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 77  TLVDVFKTQVAKHPNKPAL--KHDEQTMSFQE 106
            +  + + +    P   A      +  M++ +
Sbjct: 17  NIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQ 48


>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
           synthetase, PSI-2, protein structure initiative; 2.30A
           {Staphylococcus aureus subsp}
          Length = 501

 Score = 34.5 bits (80), Expect = 0.007
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           GEN+   ++E    +   + DA   G 
Sbjct: 405 GENIYPYQIETVAKQFPGISDAVCVGH 431



 Score = 34.1 bits (79), Expect = 0.012
 Identities = 4/30 (13%), Positives = 14/30 (46%)

Query: 77  TLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
           +L      Q  ++ +  A+   +++ ++Q 
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDGQESYTYQN 31


>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
           domain alternation confo change; 2.00A {Alcaligenes SP}
           SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
           2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
          Length = 504

 Score = 34.1 bits (79), Expect = 0.011
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           GEN+  SE+E  L     + +  V G+
Sbjct: 409 GENIHPSEIERVLGTAPGVTEVVVIGL 435



 Score = 27.9 bits (63), Expect = 1.2
 Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 77  TLVDVFKTQVAKHPNKPALKHDEQ--TMSFQE 106
           T+ ++ +    + P+  AL    +   ++  E
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAE 34


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.9 bits (77), Expect = 0.017
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 24/80 (30%)

Query: 6    VATSEVEDALSKIVQLKDAAVYGV-----------------ETSALNTLG-VL-----KK 42
            VA S  ++AL  +V+        +                 +  AL+T+  VL     +K
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876

Query: 43   IKLFQVFTSMKRQQCIRAFL 62
            I + ++  S+  ++ +   L
Sbjct: 1877 IDIIELQKSLSLEE-VEGHL 1895


>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
           HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
           4fut_A*
          Length = 503

 Score = 33.3 bits (77), Expect = 0.019
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           G NV   E+E  +  +  + ++AV GV
Sbjct: 406 GFNVYPKEIESEIDAMPGVVESAVIGV 432


>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
           adenylate-forming EN fold; HET: MCA AMP; 1.43A
           {Streptomyces coelicolor} PDB: 3nyr_A*
          Length = 505

 Score = 33.0 bits (76), Expect = 0.025
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           G  +   E+E+AL +  ++++AAV G 
Sbjct: 413 GYKIGAGEIENALLEHPEVREAAVTGE 439


>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
           synthetase, isochroismatase...; adenylate-forming
           enzymes, ANL superfamily; HET: SVS PNS; 3.10A
           {Escherichia coli}
          Length = 617

 Score = 33.0 bits (76), Expect = 0.026
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           GE +A  E+E+ L +   +  AA+  +
Sbjct: 441 GEKIAAEEIENLLLRHPAVIYAALVSM 467



 Score = 30.7 bits (70), Expect = 0.19
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 72  LWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
            W++  L D+     A   +  A+   E+ +S++E
Sbjct: 23  YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRE 55


>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
           ligase; 1.84A {Burkholderia xenovorans}
          Length = 529

 Score = 30.2 bits (69), Expect = 0.22
 Identities = 4/29 (13%), Positives = 7/29 (24%)

Query: 78  LVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
                         K A   D  + ++ E
Sbjct: 25  FAAYLFRLNETRAGKTAYIDDTGSTTYGE 53



 Score = 26.4 bits (59), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)

Query: 3   GENVATSEVEDALSK--IVQLKDAAVYGV 29
           G+ V+  EVE  L +   V   +AAV GV
Sbjct: 436 GQYVSPVEVEMVLVQHDAVL--EAAVVGV 462


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 0.39
 Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 46/184 (25%)

Query: 5   NVATSEVEDAL---SKI-VQLKDAAVYGVETSALNTLGVLKKIK----------LFQVFT 50
           NV  ++  +A     KI +  +   V    ++A  T   L              L   + 
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 51  SMK-----RQQCIRAFLTYKFIMA-----IWLWKNWTLVDVFKTQVAKHPNKPALKHDEQ 100
             +     R+           I       +  W NW  V+  K       +   L+  E 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 101 TMSFQECILKRSGFNENA---------------FYFPEEPGILIGMIKESRAESHFNGPF 145
              F    +    F  +A                       ++  + K S  E       
Sbjct: 372 RKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPK-ES 424

Query: 146 IVTI 149
            ++I
Sbjct: 425 TISI 428



 Score = 27.5 bits (60), Expect = 2.2
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 30/108 (27%)

Query: 16  SKIVQLKDAAVYGVETSALNTLGVLKKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWKN 75
            KI    D+  +    S LNTL  LK  K +      K ++ + A L   F+        
Sbjct: 505 QKIR--HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLP------- 553

Query: 76  WTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSGFNENAFYFPE 123
                    ++ ++     L   + T      +L+ +   E+   F E
Sbjct: 554 ---------KIEEN-----LICSKYT-----DLLRIALMAEDEAIFEE 582


>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
           initiative, PSI-II, NYSGXRC, 11193J, structural
           genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
          Length = 549

 Score = 28.7 bits (65), Expect = 0.76
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           G  +A  E+E  L K   + D AV G 
Sbjct: 446 GYTIAPFELEALLMKHEAVMDVAVIGK 472



 Score = 26.4 bits (59), Expect = 4.8
 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 8/40 (20%)

Query: 75  NWTLVDVFKTQVAKHPNKPALKHDE--------QTMSFQE 106
             +L D       K   K A+   E        ++M+F E
Sbjct: 18  KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLE 57


>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
           synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
           2.00A {Neotyphodium lolii}
          Length = 562

 Score = 28.4 bits (64), Expect = 0.93
 Identities = 4/40 (10%), Positives = 12/40 (30%), Gaps = 10/40 (25%)

Query: 77  TLVDVFKTQVAKHPNKPALKHDE----------QTMSFQE 106
                 +T    HP   A++             +  ++++
Sbjct: 21  PPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKK 60


>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
           transferase; 2.00A {Saccharomyces cerevisiae} PDB:
           2if8_A*
          Length = 363

 Score = 27.2 bits (59), Expect = 2.1
 Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 7/39 (17%)

Query: 82  FKTQVAKHPNKPALKHDEQTMSFQECILKRSGFNENAFY 120
            + + A H     L   +        I K +   E  FY
Sbjct: 10  LEHKAAGH--DGTLTDGDGL-----LIFKPAFPQELEFY 41


>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
           like fold, AMP-binding; 2.05A {Mycobacterium
           tuberculosis} PDB: 3e53_A
          Length = 480

 Score = 26.6 bits (59), Expect = 4.0
 Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 9/39 (23%)

Query: 77  TLVDVFKTQVAKHPNKPAL---------KHDEQTMSFQE 106
           +L    +      P+ PA               T+++ +
Sbjct: 25  SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQ 63


>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
           alpha+beta, riken structural genomics/proteomics
           initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
           PDB: 2d1q_A* 2d1r_A* 2d1t_A*
          Length = 548

 Score = 26.4 bits (59), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 2   RGENVATSEVEDALSKIVQLKDAAVYGV 29
           +G  V  +E+E  L +   + DA V GV
Sbjct: 447 KGYQVPPAELESVLLQHPSIFDAGVAGV 474


>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
           photoprotein, luminescence, aspulvinone, natural product
           extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
           1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
          Length = 550

 Score = 26.0 bits (58), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 2   RGENVATSEVEDALSKIVQLKDAAVYGV 29
           +G  VA +E+E  L +   + DA V G+
Sbjct: 445 KGYQVAPAELESILLQHPNIFDAGVAGL 472


>3dfd_A Protein YQBN; SR445 NESG X-RAY YQBN P45930, structural genomics,
           PSI-2, protein structure initiative, northeast
           structural genomics consortium; 2.20A {Bacillus
           subtilis} PDB: 3klu_A
          Length = 157

 Score = 25.6 bits (55), Expect = 5.4
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 2   RGENVATSEVEDALSKIVQLKDAAVYGVETSALNTLGVLKKIKLFQVFTSMKRQQCIRAF 61
            G+ +   EVE  +SK    K+  V      A+ T  + +  K    + ++K +  ++  
Sbjct: 17  PGQTIDAEEVEVPISKRFVDKEGNVVPFIFKAITTDRIDELEKENTTYKNVKGRGRVKEL 76

Query: 62  LTYKFIMAIWL-------WKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQECILKRSGF 114
            + +F   I +       +K   L + +KT+      K  L    +  ++    ++ +GF
Sbjct: 77  DSQRFYARIAVETTVYPTFKAKELREAYKTEDPVEVAKRVLSVGGEYANWLNKAIEINGF 136

Query: 115 NENAFYFPEE 124
           +++     E 
Sbjct: 137 DDDLEDLEEA 146


>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
           riken structural genomics/proteomics initiative, RSGI;
           HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
           PDB: 1ult_A* 1v26_A*
          Length = 541

 Score = 25.9 bits (58), Expect = 5.8
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 3   GENVATSEVEDALSKIVQLKDAAVYGV 29
           GE +++ ++E+AL    ++K+AAV  +
Sbjct: 442 GEWISSVDLENALMGHPKVKEAAVVAI 468


>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
           ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
           d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
          Length = 294

 Score = 25.9 bits (58), Expect = 5.9
 Identities = 4/41 (9%), Positives = 13/41 (31%), Gaps = 8/41 (19%)

Query: 1   WRGENVATSEVEDALSK--------IVQLKDAAVYGVETSA 33
               +       +A+          +++ K A ++G   + 
Sbjct: 180 KSLADFDGEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAI 220


>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase
           binding motif, pyrophosphorylase; HET: GTP; 2.80A
           {Methanocaldococcus jannaschii}
          Length = 196

 Score = 25.5 bits (56), Expect = 6.9
 Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)

Query: 105 QECILKRSGFNENAFYFPEEPGILIGMIKESRAESHFNGPFIVT 148
           +E I       +N           I  + E     +F+ PF+V 
Sbjct: 57  KEYINSAYKDYKNIVVIDTSGKGYIEDLNE--CIGYFSEPFLVV 98


>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
           adenylate, structural genom 2, protein structure
           initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
           subsp} PDB: 3lnv_A*
          Length = 590

 Score = 25.3 bits (56), Expect = 8.7
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 77  TLVDVFKTQVAKHPNKPALKH----DEQTMSFQE 106
           +LVDV + +    PNK +        E+TM++++
Sbjct: 12  SLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQ 45


>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
           genomics, structural genomics consortium, SGC,
           hydrolase; 1.54A {Homo sapiens}
          Length = 287

 Score = 25.3 bits (56), Expect = 8.8
 Identities = 4/26 (15%), Positives = 11/26 (42%)

Query: 122 PEEPGILIGMIKESRAESHFNGPFIV 147
           P++    +  +   R+    + P +V
Sbjct: 189 PDDSSDFLEFVNYVRSLRVDSEPVLV 214


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0789    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,189,815
Number of extensions: 115978
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 43
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)