RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8228
(149 letters)
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 44.6 bits (104), Expect = 1e-06
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 72 LWKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
W T D+ + + AK+ ++ A+ S++E
Sbjct: 21 CWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRE 55
Score = 36.5 bits (83), Expect = 6e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
GE VA EVE+ L + DAA+ +
Sbjct: 435 RGGEKVAAEEVENHLLAHPAVHDAAMVSMP 464
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 43.3 bits (101), Expect = 3e-06
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 73 WKNWTLVDVFKTQVAKHPNKPALKHDEQTMSFQE 106
++ T+ +F+ QV+K PN A+ + + +++ E
Sbjct: 20 PRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHE 53
Score = 36.4 bits (83), Expect = 6e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
RG V EVE L K + + + AV +
Sbjct: 419 IRGHRVELEEVESILLKHMYISETAVSVHK 448
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 38.7 bits (89), Expect = 1e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
++G VA +E+E L + + DA V G+
Sbjct: 441 YKGYQVAPAELESILLQHPNIFDAGVAGLP 470
Score = 27.9 bits (61), Expect = 0.50
Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 73 WKNWTLVDVFKTQVAKHPNKPAL-----KHDEQTMSFQE 106
++ T + + ++ P H E +++ E
Sbjct: 14 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAE 52
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 37.7 bits (86), Expect = 2e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
GEN+ SE+E L + + V G+
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Score = 33.5 bits (75), Expect = 0.008
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 77 TLVDVFKTQVAKHPNKPAL--KHDEQTMSFQE 106
T+ ++ + + P+ AL ++ E
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAE 34
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 36.9 bits (85), Expect = 4e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
G + T+E+E AL ++ +AAV G+
Sbjct: 518 VSGHRLGTAEIESALVAHPKIAEAAVVGIP 547
Score = 24.2 bits (52), Expect = 8.1
Identities = 3/28 (10%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 85 QVAKHPNKPAL------KHDEQTMSFQE 106
+ ++ ++ A+ + +S++E
Sbjct: 81 HLQENGDRTAIIWEGDDTSQSKHISYRE 108
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 36.8 bits (84), Expect = 5e-04
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
GE +++ ++E+AL ++K+AAV +
Sbjct: 433 SGGEWISSVDLENALMGHPKVKEAAVVAIP 462
Score = 31.4 bits (70), Expect = 0.033
Identities = 5/34 (14%), Positives = 10/34 (29%), Gaps = 4/34 (11%)
Query: 77 TLVDVFKTQVAKHPNKPALKH----DEQTMSFQE 106
L D + A K + + ++ E
Sbjct: 12 NLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAE 45
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 34.8 bits (79), Expect = 0.003
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAVYGVE 30
G ++T+E+E A+ + + + AV G
Sbjct: 508 VSGHRLSTAEIEAAIIEDPIVAECAVVGFN 537
Score = 24.4 bits (52), Expect = 8.4
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 85 QVAKHPNKPAL------KHDEQTMSFQE 106
K PNK A+ +++++E
Sbjct: 68 HALKTPNKKAIIFEGDEPGQGYSITYKE 95
>d1w2fa_ d.143.1.3 (A:) Inositol 1,4,5-trisphosphate 3-kinase A,
IP3K A {Human (Homo sapiens) [TaxId: 9606]}
Length = 276
Score = 25.8 bits (56), Expect = 2.5
Identities = 8/36 (22%), Positives = 9/36 (25%), Gaps = 6/36 (16%)
Query: 85 QVAKHPNKPALKHDEQTMSFQECILKRSGFNENAFY 120
Q+A H ILKR E
Sbjct: 5 QLAGHTGSFKAAGTS------GLILKRCSEPERYCL 34
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 200
Score = 24.7 bits (53), Expect = 4.3
Identities = 4/47 (8%), Positives = 12/47 (25%)
Query: 98 DEQTMSFQECILKRSGFNENAFYFPEEPGILIGMIKESRAESHFNGP 144
D + +++ +G P E + ++
Sbjct: 30 DHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAK 76
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 726
Score = 24.9 bits (54), Expect = 5.4
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 25 AVYGVETSALNTLGVLKKIKLFQVFTSMKRQQCIRAFLTYKFIMAIWLWKNWTLVDVFKT 84
A+YG T + +K + K R FL ++ + + T V
Sbjct: 140 ALYG--TDVIPETDGAEKGPTYNKVRGDKVIAYARKFLDDSVPLSSGSFGDATGFTVQDG 197
Query: 85 QV--AKHPNKPALKHDEQ 100
Q+ A L + Q
Sbjct: 198 QLVVALPDKSTGLANPGQ 215
>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha
chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 120
Score = 23.9 bits (51), Expect = 6.8
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 5 NVATSEVEDALSKIVQLKDAAV 26
N T + D +S+ K AV
Sbjct: 95 NKVTLDANDPISRQTDFKKCAV 116
>d2iv2x1 b.52.2.2 (X:565-715) Formate dehydrogenase H {Escherichia
coli [TaxId: 562]}
Length = 151
Score = 23.8 bits (51), Expect = 8.2
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 1 WRGENVATSEVEDALSKIVQLKDAAV 26
N +E ++K + K AV
Sbjct: 94 IGACNELVTENLSPITKTPEYKYCAV 119
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 173
Score = 23.9 bits (52), Expect = 8.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 93 PALKHDEQTMSFQECILKRSGFNENAFYF 121
P + T QE ++K+ G N F
Sbjct: 83 PPVGASGATTRLQESLIKKLGANTYPFLL 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,326
Number of extensions: 22658
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 22
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)