BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8230
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T3E|A Chain A, Structural Basis Of Dynamic Glycine Receptor Clustering
pdb|1T3E|B Chain B, Structural Basis Of Dynamic Glycine Receptor Clustering
Length = 421
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 44/214 (20%)
Query: 27 LSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAG--PVKSAS 84
++ R G ++A+ AKD+LPPF AS+KDGYAV A+DG G R ++GE AG P ++
Sbjct: 30 INYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVM 89
Query: 85 PLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDG--EEVEIKILKTPTKGQDIRVKD 142
P Q R+ TGAPIP GAD+VVQVEDTEL + D EE+E++IL GQDIR
Sbjct: 90 P---GQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIR--- 143
Query: 143 SVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGL 202
P G DI++G +L +G +GP E+GL
Sbjct: 144 --------------------------PI--------GHDIKRGECVLAKGTHMGPSEIGL 169
Query: 203 LASVGVTSITVYKKPIIHILSTGNELDEPDAHVL 236
LA+VGVT + V K P++ ++STGNEL P+ +L
Sbjct: 170 LATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLL 203
>pdb|2FTS|A Chain A, Crystal Structure Of The Glycine Receptor-Gephyrin Complex
pdb|2FU3|A Chain A, Crystal Structure Of Gephyrin E-Domain
pdb|2FU3|B Chain B, Crystal Structure Of Gephyrin E-Domain
Length = 419
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 44/214 (20%)
Query: 27 LSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAG--PVKSAS 84
++ R G ++A+ AKD+LPPF AS+KDGYAV A+DG G R ++GE AG P ++
Sbjct: 28 INYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVM 87
Query: 85 PLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDG--EEVEIKILKTPTKGQDIRVKD 142
P Q R+ TGAPIP GAD+VVQVEDTEL + D EE+E++IL GQDIR
Sbjct: 88 P---GQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIR--- 141
Query: 143 SVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGL 202
P G DI++G +L +G +GP E+GL
Sbjct: 142 --------------------------PI--------GHDIKRGECVLAKGTHMGPSEIGL 167
Query: 203 LASVGVTSITVYKKPIIHILSTGNELDEPDAHVL 236
LA+VGVT + V K P++ ++STGNEL P+ +L
Sbjct: 168 LATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLL 201
>pdb|1UZ5|A Chain A, The Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikosii
Length = 402
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 52/234 (22%)
Query: 12 LDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV------IASDG 65
L+ +++ K + + + G I AE + D+PPFD + DGYAV +AS+
Sbjct: 13 LEVVQSFKISPGIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRAEDTFMASEA 72
Query: 66 AGKR-KVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEV 124
+ R KV+G AG K Y I+TGA +P AD+V+
Sbjct: 73 SPVRLKVIGSVHAGEEPKFKLGKGEAAY-ISTGAMLPGNADAVI---------------- 115
Query: 125 EIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRK 184
Q ED E G EI I K G + KGIDI K
Sbjct: 116 ---------------------QFEDVERVNG------EILIYKPAYPGLGVMKKGIDIEK 148
Query: 185 GATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP 238
G ++++G +G + LL++VG+ + V++KP + ++STGNE+ P + LKP
Sbjct: 149 GRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKVAVISTGNEI-VPPGNELKP 201
>pdb|2NRS|A Chain A, Moea S371w
pdb|2NRS|B Chain B, Moea S371w
Length = 411
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NRP|A Chain A, Moea R350a
pdb|2NRP|B Chain B, Moea R350a
Length = 411
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|1G8L|A Chain A, Crystal Structure Of Escherichia Coli Moea
pdb|1G8L|B Chain B, Crystal Structure Of Escherichia Coli Moea
pdb|1G8R|A Chain A, Moea
pdb|1G8R|B Chain B, Moea
Length = 411
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NRO|A Chain A, Moea K279q
pdb|2NRO|B Chain B, Moea K279q
Length = 411
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NQV|A Chain A, Moea D228a
pdb|2NQV|B Chain B, Moea D228a
Length = 411
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|1FC5|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein
pdb|1FC5|B Chain B, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein
Length = 411
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 90/211 (42%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAXDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE E++
Sbjct: 87 HGEWP--AGTCIRIXTGAPVPEGCEAVVXQEQTEQXDNGVRFTAEVR------------- 131
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
GQ+IR +G DI GA + G + EL
Sbjct: 132 ------------------------------SGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NQU|A Chain A, Moea E188q
pdb|2NQU|B Chain B, Moea E188q
Length = 411
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG++L P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDQLQLP 192
>pdb|2NQR|A Chain A, Moea D142n
pdb|2NQR|B Chain B, Moea D142n
Length = 411
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G +I GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGENISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NQK|A Chain A, Moea D59n Mutant
pdb|2NQK|B Chain B, Moea D59n Mutant
Length = 411
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S +GYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMNGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NQN|A Chain A, Moea T100w
pdb|2NQN|B Chain B, Moea T100w
Length = 411
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKR--KVVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI GAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMWGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NQM|A Chain A, Moea T100a Mutant
pdb|2NQM|B Chain B, Moea T100a Mutant
Length = 411
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKR--KVVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI GAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMAGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NQQ|A Chain A, Moea R137q
pdb|2NQQ|B Chain B, Moea R137q
pdb|2NQQ|C Chain C, Moea R137q
pdb|2NQQ|D Chain D, Moea R137q
Length = 411
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+I+ +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIQRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+EL P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDELQLP 192
>pdb|2NQS|A Chain A, Moea E188a
pdb|2NQS|B Chain B, Moea E188a
Length = 411
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 48/211 (22%)
Query: 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRK--VVGERSAG-PV 80
+++L Q G I+A V+ D+P FD S DGYAV +D A + V G+ AG P
Sbjct: 27 QETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPY 86
Query: 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRV 140
P + C RI TGAP+P G ++VV E TE
Sbjct: 87 HGEWP--AGTCIRIMTGAPVPEGCEAVVMQEQTE-------------------------- 118
Query: 141 KDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPEL 200
++ G ++ GQ+IR +G DI GA + G + EL
Sbjct: 119 ----------QMDNG-------VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL 161
Query: 201 GLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++AS+G+ + V +K + + STG+ L P
Sbjct: 162 PVIASLGIAEVPVIRKVRVALFSTGDALQLP 192
>pdb|1WU2|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikoshii Ot3
pdb|1WU2|B Chain B, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikoshii Ot3
Length = 396
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 55/239 (23%)
Query: 7 AQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGA 66
A KL+LD + N+ + + + R+A G ++AE V + D+PPFD + DGYA+ A D
Sbjct: 13 ALKLLLD--DINEI-EDTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDGYAIRAEDTF 69
Query: 67 GKRK-------VVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGK 119
R+ V+ E AG V + + + + ++ TG IP GA++V+ E + +
Sbjct: 70 QAREYNPIELTVIEEVPAGNV-AKEEVTTGKAIKVLTGTRIPKGANAVIXQEXVK----R 124
Query: 120 DGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKG 179
+G+ +I +L+ GQ+I G
Sbjct: 125 EGD---------------------------------------KIYVLRPVAPGQNIAFTG 145
Query: 180 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNEL-DEPDAHVLK 237
D++KG +L +G ++ P ++ L ++G+ + V KP + I+ TG+EL +EP K
Sbjct: 146 EDVKKGEVVLRKGTILRPQDVAXLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFK 204
>pdb|1XI8|A Chain A, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
pdb|1XI8|B Chain B, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
Length = 403
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 37/207 (17%)
Query: 22 QQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPVK 81
++ + + + A G ++AE VA DLPPFD + DGYAV A D R+
Sbjct: 32 EEVEYVPLKDALGRVLAEDIVASYDLPPFDRAAVDGYAVRAEDTFEAREY---------- 81
Query: 82 SASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVK 141
SP++ +E+ + + + E + K +K T G+ R
Sbjct: 82 --SPVELEV-------------------IEEVPIGENPNKEVIAGKAIKVLTGGKIPRGA 120
Query: 142 DSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELG 201
++V+ E+ K ++G + I +L+ GQ+I G D++KG L++G ++ P +L
Sbjct: 121 NAVIM---QEMVK-REGSK--IYVLRPVAPGQNISFAGEDVKKGDIALKKGTILRPQDLA 174
Query: 202 LLASVGVTSITVYKKPIIHILSTGNEL 228
LL ++G+ + V KP + I+ TG+EL
Sbjct: 175 LLKALGIRKVPVKVKPKVGIIITGSEL 201
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 119 KDGEEVEIKI--LKTPTKGQDIRVKDSVVQVEDTE--LTKGKDGEEVEIKILKTPTKGQD 174
K GEEV L PT+ ++ R++DS + + TK KD +VEI+ L P K +
Sbjct: 231 KPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEA 290
Query: 175 IRVKGIDIRKGATILEE 191
IR +R ++EE
Sbjct: 291 IRDM---VRYARNVIEE 304
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 119 KDGEEVEIKI--LKTPTKGQDIRVKDSVVQVEDTE--LTKGKDGEEVEIKILKTPTKGQD 174
K GEEV L PT+ ++ R++DS + + TK KD +VEI+ L P K +
Sbjct: 231 KPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEA 290
Query: 175 IRVKGIDIRKGATILEE 191
IR +R ++EE
Sbjct: 291 IRDM---VRYARNVIEE 304
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 119 KDGEEVEIKI--LKTPTKGQDIRVKDSVVQVEDTE--LTKGKDGEEVEIKILKTPTKGQD 174
K GEEV L PT+ ++ R++DS + + TK KD +VEI+ L P K +
Sbjct: 231 KPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEA 290
Query: 175 IRVKGIDIRKGATILEE 191
IR +R ++EE
Sbjct: 291 IRDM---VRYARNVIEE 304
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 22 QQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPVK 81
+ K LS G + +AKD +D + K + SDG V+G GP +
Sbjct: 31 KTKHDLSIAYTPGVASVSSAIAKDKTLAYDLTTKKNTVAVISDGTA---VLGLGDIGP-E 86
Query: 82 SASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILK--TPTKG 135
+A P+ + A G D++ V DT KD EE+ I I+K PT G
Sbjct: 87 AAMPVMEGKAALFKAFA----GVDAIPIVLDT-----KDTEEI-ISIVKALAPTFG 132
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 70 KVVGERSAG---PVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKD------ 120
+V+ E G P ++A +K+S+ P+PPG +++ V +S +
Sbjct: 78 RVLAENEYGIGLPAETAESVKASE-------RPLPPGKITLMDVTRNSVSLSWEKPEHDG 130
Query: 121 GEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKG 172
G + I++ TKG D + V+V + +T GEE ++ KG
Sbjct: 131 GSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKG 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,796,374
Number of Sequences: 62578
Number of extensions: 341587
Number of successful extensions: 783
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 48
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)