Query psy8230
Match_columns 251
No_of_seqs 131 out of 1019
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:01:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0303 MoeA Molybdopterin bio 100.0 1.1E-58 2.4E-63 441.9 20.7 202 1-250 6-209 (404)
2 PRK10680 molybdopterin biosynt 100.0 9.6E-58 2.1E-62 436.1 20.3 202 1-250 7-210 (411)
3 PRK14497 putative molybdopteri 100.0 4.1E-57 8.9E-62 444.3 20.3 203 1-250 10-212 (546)
4 PRK14690 molybdopterin biosynt 100.0 2.6E-56 5.7E-61 427.2 21.0 202 1-250 22-226 (419)
5 cd00887 MoeA MoeA family. Memb 100.0 6.6E-56 1.4E-60 420.1 20.4 198 4-250 1-201 (394)
6 PLN02699 Bifunctional molybdop 100.0 1.8E-55 4E-60 441.0 21.6 209 1-250 7-215 (659)
7 PRK14491 putative bifunctional 100.0 2.2E-55 4.7E-60 436.4 21.4 202 1-250 198-400 (597)
8 PRK14498 putative molybdopteri 100.0 4E-54 8.8E-59 427.6 21.2 204 1-250 9-219 (633)
9 PF03453 MoeA_N: MoeA N-termin 100.0 1.3E-49 2.9E-54 336.7 14.3 159 1-207 1-162 (162)
10 KOG2371|consensus 100.0 2.3E-34 5.1E-39 269.1 12.1 185 24-249 36-220 (411)
11 cd03522 MoeA_like MoeA_like. T 98.3 3.8E-07 8.2E-12 85.5 2.8 64 176-249 112-184 (312)
12 PF07697 7TMR-HDED: 7TM-HD ext 89.0 0.44 9.5E-06 40.9 3.5 37 173-209 184-220 (222)
13 cd03522 MoeA_like MoeA_like. T 76.3 3.2 7E-05 39.2 4.0 30 187-216 19-48 (312)
14 PF03711 OKR_DC_1_C: Orn/Lys/A 63.6 9.4 0.0002 32.0 3.6 35 23-60 64-98 (136)
15 PLN02699 Bifunctional molybdop 55.0 3.9 8.5E-05 42.4 -0.1 35 215-249 457-494 (659)
16 PF11871 DUF3391: Domain of un 51.2 31 0.00068 27.1 4.6 52 167-218 8-59 (128)
17 PRK03604 moaC bifunctional mol 49.2 8.6 0.00019 36.4 1.2 27 216-250 153-181 (312)
18 PTZ00240 60S ribosomal protein 43.9 34 0.00073 32.8 4.3 45 181-226 160-204 (323)
19 PTZ00135 60S acidic ribosomal 40.4 39 0.00085 31.9 4.2 45 181-226 153-197 (310)
20 cd05795 Ribosomal_P0_L10e Ribo 34.4 43 0.00093 28.7 3.2 27 183-209 148-174 (175)
21 PF00122 E1-E2_ATPase: E1-E2 A 32.3 38 0.00083 29.1 2.6 30 84-115 50-80 (230)
22 PRK04019 rplP0 acidic ribosoma 29.4 53 0.0012 31.1 3.2 36 181-216 150-185 (330)
23 COG3150 Predicted esterase [Ge 26.0 49 0.0011 29.5 2.1 37 194-232 114-151 (191)
24 PRK13017 dihydroxy-acid dehydr 24.7 59 0.0013 33.7 2.7 37 197-233 27-64 (596)
25 TIGR01280 xseB exodeoxyribonuc 22.5 28 0.00061 25.7 -0.1 29 2-34 1-29 (67)
No 1
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-58 Score=441.94 Aligned_cols=202 Identities=41% Similarity=0.640 Sum_probs=191.7
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCC--ceeEEEEeeCC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG--KRKVVGERSAG 78 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~--~~~V~g~~~AG 78 (251)
|+|++||++++++++.++. .+|++++.+|+||+|||||+|+.|+|+||+|+||||||+++|+.+ .|+|+|+++||
T Consensus 6 l~~veeA~~~l~~~~~~~~---~~e~v~l~~a~GrvLAedi~A~~d~P~fd~samDGyAvr~~D~~~~~~l~V~g~i~aG 82 (404)
T COG0303 6 LLPVEEALEILLAHASPLG---ETETVPLEEALGRVLAEDVVAPLDVPPFDRSAMDGYAVRAEDTDGAATLRVVGEIAAG 82 (404)
T ss_pred CCCHHHHHHHHHhcccCCC---CceEEEHHHcCCCeeehhhccCCCCCCCcccccceeEEchhccCCceeEEEEEEecCC
Confidence 6899999999999999983 599999999999999999999999999999999999999999986 69999999999
Q ss_pred CCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCC
Q psy8230 79 PVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDG 158 (251)
Q Consensus 79 ~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (251)
+. +...+++|+|+|||||||||+|||||||+|++...+
T Consensus 83 ~~-~~~~v~~geavrI~TGA~lP~gaDaVV~~E~~~~~~----------------------------------------- 120 (404)
T COG0303 83 EV-PDLEVGPGEAVRIMTGAPLPEGADAVVMVEDTREEG----------------------------------------- 120 (404)
T ss_pred CC-CCcccCCCeEEEEeCCCCCCCCCCEEEEEEEEEecC-----------------------------------------
Confidence 77 778999999999999999999999999999986432
Q ss_pred ceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCC
Q psy8230 159 EEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP 238 (251)
Q Consensus 159 ~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~ 238 (251)
..|.|.+++.+|+|||++|+|+++|++|+++|++|+|.++++||++|+.+|+||+||||+||||||||+++++ +++|
T Consensus 121 --~~v~i~~~~~~g~nv~~~Gedi~~G~vil~~G~~L~p~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~-~l~~ 197 (404)
T COG0303 121 --DDVRILRAVKPGQNVRRAGEDVAKGDVILRAGTRLTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQ-PLEP 197 (404)
T ss_pred --CcEEEeccCCCCcccccccccccCCCEeecCCCCcCHHHHHHHHhCCCceEEEecCCEEEEEecCccccCCCC-CCCC
Confidence 1488999999999999999999999999999999999999999999999999999999999999999999997 8999
Q ss_pred CeEEccCCCCcC
Q psy8230 239 VVTFHVPRKYLG 250 (251)
Q Consensus 239 g~~~d~N~~~l~ 250 (251)
|||||+|++||.
T Consensus 198 gqI~dsN~~~l~ 209 (404)
T COG0303 198 GQIYDSNSYMLA 209 (404)
T ss_pred CeEEecCHHHHH
Confidence 999999999874
No 2
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=9.6e-58 Score=436.15 Aligned_cols=202 Identities=32% Similarity=0.464 Sum_probs=189.1
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCC--CceeEEEEeeCC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGA--GKRKVVGERSAG 78 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~--~~~~V~g~~~AG 78 (251)
|+|++||++++++++.++. .+|+|++.+|+||||||||+|+.++|+||+|+||||||+++|+. ..|+|+|++.||
T Consensus 7 ~is~~eAl~~i~~~~~~~~---~~e~v~l~~a~grvlAedv~A~~~~P~f~~SamDGyAv~~~d~~~~~~l~v~g~i~aG 83 (411)
T PRK10680 7 LMSLETALTEMLSRVTPLT---ATETLPLVQCFGRITASDIVSPLDVPGFDNSAMDGYAVRLADLASGQPLPVAGKAFAG 83 (411)
T ss_pred CccHHHHHHHHHhhCCCCC---CcEEEEHHHhCCChhheeeecCCCCCCCcccccccEEEeehhcCCCceeeEEEEEcCC
Confidence 7999999999999987762 58999999999999999999999999999999999999999974 359999999999
Q ss_pred CCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCC
Q psy8230 79 PVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDG 158 (251)
Q Consensus 79 ~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (251)
+. +...+++|+|+||||||+||+|||||||+|+++..+
T Consensus 84 ~~-~~~~~~~g~av~I~TGa~vP~gaDaVv~~E~~~~~~----------------------------------------- 121 (411)
T PRK10680 84 QP-FHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQTD----------------------------------------- 121 (411)
T ss_pred CC-CCcccCCCeEEEEecCCcCCCCCCEEEEEEEEEEcC-----------------------------------------
Confidence 86 677899999999999999999999999999997521
Q ss_pred ceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCC
Q psy8230 159 EEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP 238 (251)
Q Consensus 159 ~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~ 238 (251)
..|.|.+++.+|+|||++|||+++|++|+++|++|+|.++++|+++|+++|+||++|||+||||||||+++++ ++.+
T Consensus 122 --~~i~i~~~~~~g~nIr~~Ged~~~G~~ll~~G~~l~p~~i~lLas~G~~~V~V~~~prV~iistGdEl~~~~~-~~~~ 198 (411)
T PRK10680 122 --DGVRFTAEVRSGQNIRRRGEDISQGAVVFPAGTRLTTAELPVLASLGIAEVPVVRKVRVALFSTGDELQLPGQ-PLGD 198 (411)
T ss_pred --CEEEECCCCCCCCCccccccccCCCCEEECCcCCCCHHHHHHHHhCCCCeEEecCCCEEEEEccCCeEeCCCC-CCCC
Confidence 2588899999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CeEEccCCCCcC
Q psy8230 239 VVTFHVPRKYLG 250 (251)
Q Consensus 239 g~~~d~N~~~l~ 250 (251)
|++||+|++||.
T Consensus 199 g~i~dsn~~~l~ 210 (411)
T PRK10680 199 GQIYDTNRLAVH 210 (411)
T ss_pred CEEEEhHHHHHH
Confidence 999999998874
No 3
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=100.00 E-value=4.1e-57 Score=444.26 Aligned_cols=203 Identities=35% Similarity=0.560 Sum_probs=190.4
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCCceeEEEEeeCCCC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPV 80 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~~~~V~g~~~AG~~ 80 (251)
|+|++||++++++.+.+.. .+|+|++.+|+||||||||+|+.++|+||+|+||||||+++|+...|+|+|++.||+.
T Consensus 10 l~s~eEAl~~ll~~~~~~~---~~E~V~l~eAlGRVLAedI~A~~d~P~f~~SAMDGYAVrs~dtp~~L~v~g~i~AG~~ 86 (546)
T PRK14497 10 LYSIDEAIKVFLSSLNFKP---KIVKVEVKDSFGYVSAEDLMSPIDYPPFSRSTVDGYALKSSCTPGEFKVIDKIGIGEF 86 (546)
T ss_pred CCCHHHHHHHHHhcCCCCC---CeEEEEHHHhCCCcccceEEcCCCCCCCCCccccEEEEEecccCCceEEeeEEcCCCC
Confidence 7899999999998876642 6899999999999999999999999999999999999999999888999999999997
Q ss_pred CCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCCce
Q psy8230 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEE 160 (251)
Q Consensus 81 ~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (251)
....+.+|+|++|||||+||+|||||||+|+|+..+ +
T Consensus 87 -~~~~l~~GeAv~I~TGaplP~GaDAVV~vE~t~~~~---~--------------------------------------- 123 (546)
T PRK14497 87 -KEIHIKECEAVEVDTGSMIPMGADAVIKVENTKVIN---G--------------------------------------- 123 (546)
T ss_pred -CCcccCCCceEEeccCCCCCCCCCEEEEhhheEecC---C---------------------------------------
Confidence 567899999999999999999999999999997532 1
Q ss_pred eEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCCCe
Q psy8230 161 VEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVV 240 (251)
Q Consensus 161 ~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~g~ 240 (251)
..|.|.+++.+|+|||.+|||+++|++|+++|++|+|.+||+|+++|+.+|+||+||||+||||||||+++++ ++.+|+
T Consensus 124 ~~I~I~~~v~pg~nIr~~GeDi~~Gelll~~G~~L~p~~IglLas~Gi~~V~V~~rprV~IisTGdELv~pg~-~l~~G~ 202 (546)
T PRK14497 124 NFIKIDKKINFGQNIGWIGSDIPKGSIILRKGEVISHEKIGLLASLGISSVKVYEKPKIYLIATGDELVEPGN-SLSPGK 202 (546)
T ss_pred CEEEECCCCCCCCCccccccccCCCCEEECCCCCCCHHHHHHHHhCCCCEEeeccCCEEEEEEcCCcccCCCC-CCCCCc
Confidence 2688999999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred EEccCCCCcC
Q psy8230 241 TFHVPRKYLG 250 (251)
Q Consensus 241 ~~d~N~~~l~ 250 (251)
+||+|++||.
T Consensus 203 I~dsNs~~L~ 212 (546)
T PRK14497 203 IYESNLHYLY 212 (546)
T ss_pred EEEhHHHHHH
Confidence 9999999874
No 4
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=2.6e-56 Score=427.22 Aligned_cols=202 Identities=29% Similarity=0.394 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCC--ceeEE-EEeeC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG--KRKVV-GERSA 77 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~--~~~V~-g~~~A 77 (251)
|+|++||++++++.+.+.. ..|+|++.+|+||||||||+|+.|+|+||+|+||||||+++|+.. .|+|+ |++.|
T Consensus 22 ~~s~~eA~~~i~~~~~~~~---~~e~v~l~~A~grvlAedv~a~~d~P~f~~SamDGyAv~~~d~~~~~~l~v~~g~i~A 98 (419)
T PRK14690 22 WTPVDTALDLLRARLGPVT---DIKELDLSDALGHVLAHDAVALRSNPPQANSAVDGYGFAGAAPEGAQVLPLIEGRAAA 98 (419)
T ss_pred cCCHHHHHHHHHhcCCCCC---CeEEEEHHHhCCCceeeeeecCCCCCCCccccccceEEecccccCCceeEeeeeEECC
Confidence 7899999999999887652 689999999999999999999999999999999999999988743 47877 99999
Q ss_pred CCCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCC
Q psy8230 78 GPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKD 157 (251)
Q Consensus 78 G~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (251)
|.. +...+.+|+|+||||||+||+|||||||+|+++.. +
T Consensus 99 G~~-~~~~~~~G~av~I~TGa~lP~gaDaVV~~E~~~~~---~------------------------------------- 137 (419)
T PRK14690 99 GVP-FSGRVPEGMALRILTGAALPEGVDTVVLEEDVAGD---G------------------------------------- 137 (419)
T ss_pred CCC-CCcccCCCcEEEEcCCCCCCCCCCEEEEEEEEEeC---C-------------------------------------
Confidence 986 67789999999999999999999999999999752 1
Q ss_pred CceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCC
Q psy8230 158 GEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLK 237 (251)
Q Consensus 158 ~~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~ 237 (251)
..|.|.+++++|+|||++|||+++|++|+++|++|+|.++++||++|+.+|+||++|||+||||||||+++++ +++
T Consensus 138 ---~~i~i~~~~~~g~nIr~~Ged~~~G~~ll~~G~~l~p~~i~~Las~G~~~V~V~~~prV~IisTGdEl~~~g~-~~~ 213 (419)
T PRK14690 138 ---HRIAFHGPLKMGANTRKAGEDVIAGDVALPAGRRLTPADLALLSAVGLTRVSVRRPLRVAVLSTGDELVEPGA-LAE 213 (419)
T ss_pred ---CEEEECCCCCCCCCccccccccCCCCEEECCCCCCCHHHHHHHHhCCCCeeEeecCCEEEEEEccccccCCCC-CCC
Confidence 2588999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred CCeEEccCCCCcC
Q psy8230 238 PVVTFHVPRKYLG 250 (251)
Q Consensus 238 ~g~~~d~N~~~l~ 250 (251)
+|++||+|++||.
T Consensus 214 ~g~i~dsN~~~L~ 226 (419)
T PRK14690 214 VGQIYDANRPMLL 226 (419)
T ss_pred CCeEEeCHHHHHH
Confidence 9999999999874
No 5
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=100.00 E-value=6.6e-56 Score=420.06 Aligned_cols=198 Identities=43% Similarity=0.663 Sum_probs=185.9
Q ss_pred HHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCC---ceeEEEEeeCCCC
Q psy8230 4 VEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG---KRKVVGERSAGPV 80 (251)
Q Consensus 4 ~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~---~~~V~g~~~AG~~ 80 (251)
.+||++++++...+. ..|+|++.+|+||||||||+|+.++|+||+|+||||||+++|+.+ .|+|+|++.||+.
T Consensus 1 ~~~a~~~~~~~~~~~----~~e~v~l~~a~GrvlAedI~A~~~~P~f~~SamDGyAv~~~d~~~~~~~l~v~g~i~AG~~ 76 (394)
T cd00887 1 VEAARELLLALAPPL----GTETVPLLEALGRVLAEDVVAPIDLPPFDNSAMDGYAVRAADTAGASVTLRVVGEIPAGEP 76 (394)
T ss_pred CHHHHHHHHhcCCCC----CeEEEEHHHhCCCeeeeeeecCCCCCCCCCccccceEEeeccccCCCeEEEEeeEECCCCC
Confidence 378999999987766 899999999999999999999999999999999999999999864 5999999999997
Q ss_pred CCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCCce
Q psy8230 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEE 160 (251)
Q Consensus 81 ~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (251)
+...+.+|+|+||||||+||+|||||||+|+++..+
T Consensus 77 -~~~~~~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~------------------------------------------- 112 (394)
T cd00887 77 -PDGPLGPGEAVRIMTGAPLPEGADAVVMVEDTEEEG------------------------------------------- 112 (394)
T ss_pred -CCcccCCCeEEEEcCCCCCCCCCCEEEEEEeEEECC-------------------------------------------
Confidence 567899999999999999999999999999997531
Q ss_pred eEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCCCe
Q psy8230 161 VEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVV 240 (251)
Q Consensus 161 ~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~g~ 240 (251)
..|.|.+++++|+|||++|||+++|++|+++|++|+|.++++||++|+.+|+||++|||+||+|||||+++++ ++.+|+
T Consensus 113 ~~i~i~~~~~~g~nIr~~Gedi~~G~~ll~~G~~l~p~~i~~Las~Gi~~v~V~~~~rv~ii~tGdEl~~~g~-~~~~g~ 191 (394)
T cd00887 113 GRVTITKPVKPGQNIRRAGEDIKAGDVLLPAGTRLTPADIGLLASLGIAEVPVYRRPRVAIISTGDELVEPGE-PLAPGQ 191 (394)
T ss_pred CEEEECCCCCCCCCCCcccCccCCCCEEECCCCCCCHHHHHHHHhCCCCEEEEecCCEEEEEeCCCcccCCCC-CCCCCE
Confidence 2688999999999999999999999999999999999999999999999999999999999999999999998 799999
Q ss_pred EEccCCCCcC
Q psy8230 241 TFHVPRKYLG 250 (251)
Q Consensus 241 ~~d~N~~~l~ 250 (251)
+||+|++||.
T Consensus 192 i~dsn~~~l~ 201 (394)
T cd00887 192 IYDSNSYMLA 201 (394)
T ss_pred EEEChHHHHH
Confidence 9999999873
No 6
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=100.00 E-value=1.8e-55 Score=440.97 Aligned_cols=209 Identities=42% Similarity=0.608 Sum_probs=192.1
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCCceeEEEEeeCCCC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPV 80 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~~~~V~g~~~AG~~ 80 (251)
|+|++||++++++.+.+. .+|+|++.+|+||||||||+|+.++|+||+|+||||||+++|....|+|+|+++||+.
T Consensus 7 mis~~eA~~~i~~~~~~~----~~e~V~l~~A~GRVLAedv~A~~d~P~fd~SamDGYAv~~~d~~~~l~v~g~i~AG~~ 82 (659)
T PLN02699 7 MISVEEALSIVLSVAARL----SPVIVPLHEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPGEYPVITESRAGND 82 (659)
T ss_pred CCCHHHHHHHHHhcCCCC----CcEEEEHHHcCCCceeeeeecCCCCCCCcccccceeEEecccCCCcceeeeeEcCCCC
Confidence 899999999999998876 7899999999999999999999999999999999999999998888999999999987
Q ss_pred CCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCCce
Q psy8230 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEE 160 (251)
Q Consensus 81 ~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (251)
+....+.+|+|+||||||+||+|||||||+|+++..++ + .+++
T Consensus 83 ~~~~~l~~G~avrI~TGa~iP~GaDaVI~~E~~~~~~~--~-----------------------------------~~~~ 125 (659)
T PLN02699 83 GLGVTLTPGTVAYVTTGGPIPDGADAVVQVEDTEVVED--P-----------------------------------LDGS 125 (659)
T ss_pred CCCcccCCCcEEEEccCCCCCCCCCEEEEEEEEEecCC--C-----------------------------------cCcc
Confidence 44568999999999999999999999999999976431 0 0012
Q ss_pred eEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCCCe
Q psy8230 161 VEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVV 240 (251)
Q Consensus 161 ~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~g~ 240 (251)
..|.|.+++++|+|||++|||+++|++|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++..+++|+
T Consensus 126 ~~I~i~~~v~~g~nIr~~Ged~~~G~~ll~~G~~l~p~~i~lLas~Gi~~V~V~~kprV~visTGdELv~~g~~~~~~g~ 205 (659)
T PLN02699 126 KRVRILSQASKGQDIRPVGCDIEKDAKVLKAGERLGASEIGLLATVGVTMVKVYPRPTVAILSTGDELVEPTTGTLGRGQ 205 (659)
T ss_pred ceEEECCCCCCCCCccccccccCCCCEEECCcCCCCHHHHHHHHHCCCCeEEeecCCeEEEEeCCcccccCCCCCCCCCc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999974589999
Q ss_pred EEccCCCCcC
Q psy8230 241 TFHVPRKYLG 250 (251)
Q Consensus 241 ~~d~N~~~l~ 250 (251)
+||+|++||.
T Consensus 206 i~dsN~~~L~ 215 (659)
T PLN02699 206 IRDSNRAMLL 215 (659)
T ss_pred EEeChHHHHH
Confidence 9999998874
No 7
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=100.00 E-value=2.2e-55 Score=436.39 Aligned_cols=202 Identities=29% Similarity=0.498 Sum_probs=189.1
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCC-ceeEEEEeeCCC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG-KRKVVGERSAGP 79 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~-~~~V~g~~~AG~ 79 (251)
|+|++||++++++.+.++. .+|.|++.+|+||||||||+|+.|+|+|++|+||||||+++|+.. .|+|+|++.||.
T Consensus 198 ~is~~eAl~~i~~~~~~~~---~~e~V~l~~A~GRVlAedI~A~~d~P~f~~SamDGYAv~~~d~~~~~l~v~g~i~AG~ 274 (597)
T PRK14491 198 FLSVSQGLDKILSLVTPVT---ETEDVALDELDGRVLAQDVISPVNVPQHTNSAMDGYAFRSDDLEPESYTLVGEVLAGH 274 (597)
T ss_pred CCCHHHHHHHHHhcCCCCC---CeEEEEHHHhCCCeeeeeeecCCCCCCCcccccceEEEeecccCCCeEEeeeEEcCCC
Confidence 8999999999999987762 589999999999999999999999999999999999999999743 599999999998
Q ss_pred CCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCCc
Q psy8230 80 VKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGE 159 (251)
Q Consensus 80 ~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 159 (251)
. +...+.+|+|+||||||+||+|||||||+|+++..+
T Consensus 275 ~-~~~~l~~G~avrI~TGa~iP~gaDaVV~~E~~~~~~------------------------------------------ 311 (597)
T PRK14491 275 Q-YDGTLQAGEAVRIMTGAPVPAGADTVVMRELATQDG------------------------------------------ 311 (597)
T ss_pred C-CCcccCCCcEEEeCcCCCCCCCCCEEEEEEEEEecC------------------------------------------
Confidence 7 667899999999999999999999999999997521
Q ss_pred eeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCCC
Q psy8230 160 EVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPV 239 (251)
Q Consensus 160 ~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~g 239 (251)
..|.|.+++.+|+|||++|||+++|++|+++|++|+|.++++||++|+.+|+||++|||+||+|||||+++++ ++.+|
T Consensus 312 -~~i~i~~~~~~g~nIr~~GeD~~~Ge~ll~~G~~i~p~~i~lLAs~Gi~~V~V~~~prV~IistGdEl~~~g~-~~~~g 389 (597)
T PRK14491 312 -DKVSFDGGIKAGQNVRLAGEDLAQGQVALAAGTRLSAPEQGLLASLGFAEVPVFRRPKVAVFSTGDEVQAPGE-TLKPN 389 (597)
T ss_pred -CEEEECCCCCCCCCccccccccCCCCEeECCcCCCCHHHHHHHHHCCCCeEEeccCCEEEEEecCCeeccCCC-cCCCC
Confidence 2588899999999999999999999999999999999999999999999999999999999999999999998 79999
Q ss_pred eEEccCCCCcC
Q psy8230 240 VTFHVPRKYLG 250 (251)
Q Consensus 240 ~~~d~N~~~l~ 250 (251)
++||+|++||.
T Consensus 390 ~i~dsn~~~L~ 400 (597)
T PRK14491 390 CIYDSNRFTIK 400 (597)
T ss_pred cEEeCCHHHHH
Confidence 99999999874
No 8
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=100.00 E-value=4e-54 Score=427.57 Aligned_cols=204 Identities=37% Similarity=0.571 Sum_probs=188.4
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCC-------CceeEEE
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGA-------GKRKVVG 73 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~-------~~~~V~g 73 (251)
|+|++||++++++++.+.. ..+|.|++.+|+||||||||+|+.|+|+|++|+||||||+++|+. ..|+|+|
T Consensus 9 ~~s~~eA~~~i~~~~~~~~--~~~e~v~l~~a~grvlAedi~a~~~~P~f~~SamDGyAv~~~d~~~~~~~~p~~l~v~~ 86 (633)
T PRK14498 9 LVSLEEAREILESLLSELP--LGTEEVPLEEALGRVLAEDVYAPIDVPPFDRSAMDGYAVRAADTFGASEANPVRLKLGG 86 (633)
T ss_pred CCCHHHHHHHHHhhCCCCC--CCcEEEEHHHhCCCceeceeecCCCCCCCcccccceEEEeehhccccccCCCeEEEEee
Confidence 7899999999999987651 168999999999999999999999999999999999999999863 2489999
Q ss_pred EeeCCCCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccc
Q psy8230 74 ERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELT 153 (251)
Q Consensus 74 ~~~AG~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (251)
+++||+. ....+++|+|+||||||+||+|||||||+|+++..+
T Consensus 87 ~i~AG~~-~~~~~~~g~av~I~TGa~vP~gad~Vi~~E~~~~~~------------------------------------ 129 (633)
T PRK14498 87 EVHAGEA-PDVEVEPGEAVEIATGAPIPRGADAVVMVEDTEEVD------------------------------------ 129 (633)
T ss_pred EEcCCCC-CCcccCCCeEEEECCCCCCCCCCCEEEEEEEEEcCC------------------------------------
Confidence 9999997 567899999999999999999999999999997532
Q ss_pred cCCCCceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCC
Q psy8230 154 KGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA 233 (251)
Q Consensus 154 ~~~~~~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~ 233 (251)
+..|.|.+++++|+|||.+|||+++|++|+++|++|+|.++++||++|+.+|+||++|||+||+|||||+++++
T Consensus 130 ------~~~i~i~~~~~~g~~ir~~G~d~~~G~~l~~~g~~i~p~~i~~las~g~~~v~v~~~prv~vi~tG~El~~~~~ 203 (633)
T PRK14498 130 ------DDTVEIYRPVAPGENVRPAGEDIVAGELILPKGTRLTPRDIGALAAGGVAEVPVYKKPRVGIISTGDELVEPGE 203 (633)
T ss_pred ------CCEEEECCCCCCCCCcccCcCccCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEecCcEEEEEecCccccCCCC
Confidence 02688999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCeEEccCCCCcC
Q psy8230 234 HVLKPVVTFHVPRKYLG 250 (251)
Q Consensus 234 ~~~~~g~~~d~N~~~l~ 250 (251)
++.+|++||+|++||.
T Consensus 204 -~~~~g~i~dsn~~~l~ 219 (633)
T PRK14498 204 -PLKPGKIYDVNSYTLA 219 (633)
T ss_pred -CCCCCEEEEChHHHHH
Confidence 7999999999998873
No 9
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=100.00 E-value=1.3e-49 Score=336.67 Aligned_cols=159 Identities=46% Similarity=0.723 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCC---ceeEEEEeeC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG---KRKVVGERSA 77 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~---~~~V~g~~~A 77 (251)
|+|++||+++|++.+.++ .+|+|+|.+|+||||||||+|+.++|+|++|+||||||+++|..+ .|+|+|++.|
T Consensus 1 Mis~~eA~~~i~~~~~~~----~~e~v~l~~a~grvlAedi~a~~~~P~~~~SamDGyAv~~~d~~~~~~~l~v~~~i~a 76 (162)
T PF03453_consen 1 MISVEEALEIILSHIKPL----PTETVPLDDALGRVLAEDIYAPRDVPPFDRSAMDGYAVRSEDTSGASPELRVVGEIAA 76 (162)
T ss_dssp -BEHHHHHHHHHHHS--------EEEEEGGGGTT-BBSS-EE-SS-BSSS-EESSSEEEE-GGGGTTCCTEEEEEEEEBT
T ss_pred CCCHHHHHHHHHhhCCCC----CcEEEEHHHhCCCeeeeeeecCCCCCCCcchhhhccEEecccccCCCcceeeeeeeec
Confidence 999999999999999998 799999999999999999999999999999999999999999865 4999999999
Q ss_pred CCCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCC
Q psy8230 78 GPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKD 157 (251)
Q Consensus 78 G~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (251)
|+. ....+++|+|+||||||+||+|||||||+|++++.+
T Consensus 77 G~~-~~~~l~~g~av~I~TGa~vP~g~DaVV~~E~~~~~~---------------------------------------- 115 (162)
T PF03453_consen 77 GDP-PPIPLQPGEAVRIMTGAPVPEGADAVVPIEDTEVEG---------------------------------------- 115 (162)
T ss_dssp TC---SSB--TTEEEEE-TTSB--TT-SEEEEGGGCEEET----------------------------------------
T ss_pred ccc-ccccCCCCeEEEEeCCCccCCCCCEEEEehheeecc----------------------------------------
Confidence 998 567899999999999999999999999999998753
Q ss_pred CceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcC
Q psy8230 158 GEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVG 207 (251)
Q Consensus 158 ~~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~G 207 (251)
.+|+|.+++++|+|||++|+|+++|++|+++|++|+|.+|++|+++|
T Consensus 116 ---~~i~i~~~~~~g~nIr~~G~di~~G~~ll~~G~~l~p~~i~lLas~G 162 (162)
T PF03453_consen 116 ---DEIRILKPVKPGQNIRPKGEDIKKGEVLLKKGTRLTPAHIGLLASAG 162 (162)
T ss_dssp ---TEEEESS--STTTTEE-TTSSB-TTSEEE-TTBB--HHHHHHHHHTT
T ss_pred ---cEEEEeeccCCCCcEEeCCccccCCCEEECCCCCCCHHHHHHHHhCC
Confidence 27889999999999999999999999999999999999999999998
No 10
>KOG2371|consensus
Probab=100.00 E-value=2.3e-34 Score=269.06 Aligned_cols=185 Identities=45% Similarity=0.764 Sum_probs=168.2
Q ss_pred cEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCCceeEEEEeeCCCCCCCCCCCCCCeEEEccCCCCCCC
Q psy8230 24 KQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPG 103 (251)
Q Consensus 24 ~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~~~~V~g~~~AG~~~~~~~l~~g~~v~I~TGapiP~g 103 (251)
.+.+-..--.++++++++.+..|+||+. |..||||++++|..+..+++|...||.. +..++-+|+|+||.||+|+|.|
T Consensus 36 ~~~i~ts~~v~~~il~e~~s~vdipP~t-SikdGyAv~a~~~~g~rrivg~s~ag~~-p~~~~~~~~cvrittG~pip~g 113 (411)
T KOG2371|consen 36 VTVIQTSLKVGRKILEEIKSEVDIPPLT-SIKDGYAVIANDGPGKRRIVGLSTAGTP-PNAPLISGECVRITTGGPIPDG 113 (411)
T ss_pred eeeEecccccchhhHHhhcCcccCCCcc-eeccceEEEecCCCcceEEEeeeccCCC-CccccccCceEEecCCCccccc
Confidence 3444444557889999999999999997 9999999999999999999999999998 5788999999999999999999
Q ss_pred CCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCCceeEEEEecCCCCCCCeecCccccc
Q psy8230 104 ADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIR 183 (251)
Q Consensus 104 aDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~g~nIr~~G~Di~ 183 (251)
||||||+|++++... ++ +.+|-.|.++..++.|+|||..|+|++
T Consensus 114 adtvvqve~t~L~~~-~n-----------------------------------~~eEl~i~~lv~~~~g~~ir~vgsDi~ 157 (411)
T KOG2371|consen 114 ADTVVQVEDTELLRE-DN-----------------------------------GLEELEIEILVKPQEGDNIRPVGSDIK 157 (411)
T ss_pred ccceEEehhHHHHhh-hc-----------------------------------cccccceEEEeecCCCCcccccccccc
Confidence 999999999988754 22 225567999999999999999999999
Q ss_pred CCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCCCeEEccCCCCc
Q psy8230 184 KGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPRKYL 249 (251)
Q Consensus 184 ~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~g~~~d~N~~~l 249 (251)
|+.++++|..+.|..+++|.++|+..+++||+|+|+|+|||+|+..+++ +.||.++++|+.+|
T Consensus 158 -~e~i~k~~~~l~p~si~~l~~~gi~~v~iykkpvVtV~sTgSel~~~d~--~~pg~v~~~n~s~l 220 (411)
T KOG2371|consen 158 -GEIILKKGHHLDPSSIGLLHALGIVQVEIYKKPVVTVSSTGSELNSPDR--SGPGMVRDSNRSQL 220 (411)
T ss_pred -ceeeccccccCCcccceehhhccccccceecccEEEEeeccccccCccc--cCCceeeecchHHH
Confidence 9999999999999999999999999999999999999999999999965 89999999999765
No 11
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=98.29 E-value=3.8e-07 Score=85.46 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=55.6
Q ss_pred ecCcccccCCCEEecCCCeeCHHHH---------HHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCCCeEEccCC
Q psy8230 176 RVKGIDIRKGATILEEGNLIGPPEL---------GLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPR 246 (251)
Q Consensus 176 r~~G~Di~~G~~ll~~G~~I~p~~i---------~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~g~~~d~N~ 246 (251)
++.+..+++|+.| +|.+|-|..+ ++|++.|+.+|.||++|||+||+||||+. +|+++|+|+
T Consensus 112 ~~~~~~v~~g~~v--A~~riiPl~v~~~~~~~a~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~--------~G~i~D~~~ 181 (312)
T cd03522 112 LHNNTPVEAGQMV--ATVKIIPLAVPEALVERAEALARDGPLLRVAPFRPLRVGLIVTGSEVY--------GGRIEDKFG 181 (312)
T ss_pred cCCCeEeCCCCEE--EEEEEeeeecCHHHHHHHHHHHHhCCCcEEEecCCCEEEEEEcCCcCC--------CCcEEEhHH
Confidence 4556778899999 6899999775 77888999999999999999999999963 677999999
Q ss_pred CCc
Q psy8230 247 KYL 249 (251)
Q Consensus 247 ~~l 249 (251)
++|
T Consensus 182 ~~l 184 (312)
T cd03522 182 PVL 184 (312)
T ss_pred HHH
Confidence 876
No 12
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=89.03 E-value=0.44 Score=40.94 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.0
Q ss_pred CCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCC
Q psy8230 173 QDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVT 209 (251)
Q Consensus 173 ~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~ 209 (251)
++|.+.=.-|++|++|+++|++||+.++-.|.++|.-
T Consensus 184 ~~V~pv~~~V~~Ge~IV~kGe~VT~e~~~~L~~l~~~ 220 (222)
T PF07697_consen 184 ASVSPVRGMVKKGEVIVRKGEIVTEEQYEKLESLGLL 220 (222)
T ss_pred hcCCchHhhccCCCEEecCCcEeCHHHHHHHHHcCCc
Confidence 4555655679999999999999999999999999964
No 13
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=76.34 E-value=3.2 Score=39.18 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=27.9
Q ss_pred EEecCCCeeCHHHHHHHHHcCCCeEEEecC
Q psy8230 187 TILEEGNLIGPPELGLLASVGVTSITVYKK 216 (251)
Q Consensus 187 ~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~ 216 (251)
..++||++|+..++..|.+.|..+|.|.+.
T Consensus 19 ~~~~kG~vi~~~di~~L~~~G~~~v~v~~~ 48 (312)
T cd03522 19 RAFKKGHVLTAEDIAALLAAGKEHVYVARL 48 (312)
T ss_pred ceecCCCCCCHHHHHHHHhCCCcEEEEEEC
Confidence 788999999999999999999999999765
No 14
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=63.56 E-value=9.4 Score=31.96 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=21.7
Q ss_pred ccEEEecccccCceeccccccCCCCCCCCCCcCceEee
Q psy8230 23 QKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60 (251)
Q Consensus 23 ~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv 60 (251)
..+.|++.+|.|||.|+-|.. +||==--.|-|=-|
T Consensus 64 ~~e~v~l~~~~GrIsae~i~p---YPPGIPll~pGE~i 98 (136)
T PF03711_consen 64 EKERVPLEEAVGRISAEFIVP---YPPGIPLLVPGERI 98 (136)
T ss_dssp -EEEEEGGG-TTSBBSS-BEE---CTTTS-SB-TTEEB
T ss_pred cceEEEccccCCeEEEeeeee---cCCCCcEECCcccc
Confidence 678999999999999998763 66644444444333
No 15
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=55.04 E-value=3.9 Score=42.37 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=26.3
Q ss_pred cCCeEEEEecCCcccCCCCC---CCCCCeEEccCCCCc
Q psy8230 215 KKPIIHILSTGNELDEPDAH---VLKPVVTFHVPRKYL 249 (251)
Q Consensus 215 ~~prV~ilsTGdEL~~~~~~---~~~~g~~~d~N~~~l 249 (251)
.+++|+||+||||+...... -+..++++++|...+
T Consensus 457 ~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l 494 (659)
T PLN02699 457 PEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKL 494 (659)
T ss_pred CCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhc
Confidence 46899999999999876541 156667888886554
No 16
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=51.24 E-value=31 Score=27.14 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=43.5
Q ss_pred cCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCe
Q psy8230 167 KTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPI 218 (251)
Q Consensus 167 ~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~pr 218 (251)
..+++|.+|....-.+..--.+++.|..-+..+|-.|.+.|+..|.|-....
T Consensus 8 ~~L~~GM~V~~~~~~w~~~pfl~~~f~I~s~~~I~~L~~~gi~~V~Id~~k~ 59 (128)
T PF11871_consen 8 DQLKPGMYVSRLDRSWLEHPFLFQGFLIKSQADIEKLRRLGIQEVYIDPDKS 59 (128)
T ss_pred HHCCCCcEEEecCCCccCCCeeeeceeECCHHHHHHHHHCCCcEEEEECCCC
Confidence 3467899999988777777788888888899999999999999999864433
No 17
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=49.20 E-value=8.6 Score=36.43 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=22.4
Q ss_pred CC--eEEEEecCCcccCCCCCCCCCCeEEccCCCCcC
Q psy8230 216 KP--IIHILSTGNELDEPDAHVLKPVVTFHVPRKYLG 250 (251)
Q Consensus 216 ~p--rV~ilsTGdEL~~~~~~~~~~g~~~d~N~~~l~ 250 (251)
+| +++||.+|||+ .+|+++|+|+++|.
T Consensus 153 ~~~~~~aIltvsde~--------~~G~i~Dsn~~~L~ 181 (312)
T PRK03604 153 RPRTSAAVLVLSDSI--------AAGTKEDRSGKLIV 181 (312)
T ss_pred CCccEEEEEEECCcC--------CCCcEEEhHHHHHH
Confidence 55 67799999987 67889999998873
No 18
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=43.91 E-value=34 Score=32.76 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=35.5
Q ss_pred cccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCC
Q psy8230 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGN 226 (251)
Q Consensus 181 Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGd 226 (251)
+|.+.-+|+++|++|++.+-.||.-+||.-.++ +--..+++.-|.
T Consensus 160 eI~~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~-gl~l~~vyd~g~ 204 (323)
T PTZ00240 160 EIVTEKKVLSVGDKVDNSTATLLQKLNISPFYY-QVEVLSVWDRGV 204 (323)
T ss_pred EEecCeEEecCCCCcCHHHHHHHHHcCCCeEEE-EEEEEEEEeCCe
Confidence 344566899999999999999999999998774 555556666664
No 19
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=40.39 E-value=39 Score=31.95 Aligned_cols=45 Identities=18% Similarity=0.439 Sum_probs=34.8
Q ss_pred cccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCC
Q psy8230 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGN 226 (251)
Q Consensus 181 Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGd 226 (251)
+|.+.-+|+++|++|++.+-.||..+||.-.+. +--..+++..|.
T Consensus 153 ~I~~d~~v~k~Ge~v~~~~A~LL~~L~I~p~~~-~l~~~~~yd~g~ 197 (310)
T PTZ00135 153 EITNEVHLIKEGQKVGASQAVLLQKLNIKPFSY-GLEVLSIYDNGS 197 (310)
T ss_pred EEecCeEEecCCCCcCHHHHHHHHHcCCCeEEE-EEEEEEEEECCe
Confidence 344566899999999999999999999987664 444556666554
No 20
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=34.37 E-value=43 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.8
Q ss_pred cCCCEEecCCCeeCHHHHHHHHHcCCC
Q psy8230 183 RKGATILEEGNLIGPPELGLLASVGVT 209 (251)
Q Consensus 183 ~~G~~ll~~G~~I~p~~i~lLas~Gi~ 209 (251)
.+.-+|+++|+.|++.+-.+|..+|+.
T Consensus 148 ~~d~~v~k~G~~v~~~~A~lL~~l~i~ 174 (175)
T cd05795 148 ISDVVVVKKGEKVGASEATLLNKLNIK 174 (175)
T ss_pred ecCeEEecCCCCcCHHHHHHHHHcCCC
Confidence 355689999999999999999999974
No 21
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=32.33 E-value=38 Score=29.07 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCCCCCCeEEEccCCCCCCCCCEEEEe-eeeee
Q psy8230 84 SPLKSSQCYRINTGAPIPPGADSVVQV-EDTEL 115 (251)
Q Consensus 84 ~~l~~g~~v~I~TGapiP~gaDaVV~~-E~~~~ 115 (251)
..|.+|+.+++..|..+| ||+++-. .++.+
T Consensus 50 ~~L~~GDiI~l~~g~~vP--aD~~ll~~g~~~v 80 (230)
T PF00122_consen 50 SELVPGDIIILKAGDIVP--ADGILLESGSAYV 80 (230)
T ss_dssp GGT-TTSEEEEETTEBES--SEEEEEESSEEEE
T ss_pred hhccceeeeecccccccc--cCccceecccccc
Confidence 368899999999999999 9999987 66554
No 22
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=29.35 E-value=53 Score=31.10 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=30.4
Q ss_pred cccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecC
Q psy8230 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKK 216 (251)
Q Consensus 181 Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~ 216 (251)
.+.+..+|+++|+.|+|....+|..+||+-..+.-+
T Consensus 150 ~i~~~~~v~~~G~~v~~~~a~lL~~LgI~p~~~~~~ 185 (330)
T PRK04019 150 VIKKDTVVAKAGEVISPELANVLQKLGIKPIEVGLD 185 (330)
T ss_pred EEecCeEEecCCCCcCHHHHHHHHHcCCCHHHhhhH
Confidence 356788999999999999999999999987665433
No 23
>COG3150 Predicted esterase [General function prediction only]
Probab=25.99 E-value=49 Score=29.45 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=26.2
Q ss_pred eeCHHHHHHHHHcCCCeEEEecCCeEEEEe-cCCcccCCC
Q psy8230 194 LIGPPELGLLASVGVTSITVYKKPIIHILS-TGNELDEPD 232 (251)
Q Consensus 194 ~I~p~~i~lLas~Gi~~V~V~~~prV~ils-TGdEL~~~~ 232 (251)
+|.+.||.-|+...+..+. +.-+.-+++ ||||+.+-.
T Consensus 114 ~le~~hI~~l~~~~~~~l~--~p~~~~lL~qtgDEvLDyr 151 (191)
T COG3150 114 VLESRHIATLCVLQFRELN--RPRCLVLLSQTGDEVLDYR 151 (191)
T ss_pred EeehhhHHHHHHhhccccC--CCcEEEeecccccHHHHHH
Confidence 4788999999998887765 222333444 999997644
No 24
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=24.74 E-value=59 Score=33.73 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCeEEEe-cCCeEEEEecCCcccCCCC
Q psy8230 197 PPELGLLASVGVTSITVY-KKPIIHILSTGNELDEPDA 233 (251)
Q Consensus 197 p~~i~lLas~Gi~~V~V~-~~prV~ilsTGdEL~~~~~ 233 (251)
+.+-++|.+.|++.=... .||.|+|.+|.+|+.....
T Consensus 27 ~~~ra~~~a~G~~~ed~~~~KP~IgI~ns~se~~Pch~ 64 (596)
T PRK13017 27 ALYLERYMNYGLTREELQSGKPIIGIAQTGSDLSPCNR 64 (596)
T ss_pred HHHHHHHHHcCCChHHhccCCCEEEEEecccCCcCchh
Confidence 477899999999988875 8999999999999987764
No 25
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=22.52 E-value=28 Score=25.68 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHhhcccccCCCccEEEecccccC
Q psy8230 2 LEVEAAQKLILDFIETNKCGQQKQSLSCRQAGG 34 (251)
Q Consensus 2 is~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~G 34 (251)
+|+++|++.+...+..+ ....+||.+++.
T Consensus 1 ~sfEe~l~~Le~Iv~~L----E~~~l~Leesl~ 29 (67)
T TIGR01280 1 LSFEEALSELEQIVQKL----ESGDLALEEALN 29 (67)
T ss_pred CCHHHHHHHHHHHHHHH----HCCCCCHHHHHH
Confidence 47899999988888887 677788877653
Done!