Query psy8230
Match_columns 251
No_of_seqs 131 out of 1019
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:01:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fts_A Gephyrin; gephyrin, neu 100.0 8.6E-58 2.9E-62 435.3 19.4 209 1-250 6-214 (419)
2 1uz5_A MOEA protein, 402AA lon 100.0 1.2E-55 4.2E-60 418.8 19.9 201 1-250 6-213 (402)
3 1g8l_A Molybdopterin biosynthe 100.0 1.3E-55 4.3E-60 419.8 17.8 202 1-250 7-210 (411)
4 1wu2_A MOEA protein, molybdopt 100.0 3.4E-55 1.2E-59 415.1 17.3 202 1-250 7-217 (396)
5 3rfq_A Pterin-4-alpha-carbinol 95.9 0.0014 4.8E-08 55.9 0.2 32 198-230 13-44 (185)
6 3lti_A DNA-directed RNA polyme 47.3 22 0.00075 32.3 4.9 34 181-214 156-189 (296)
7 3jsy_A Acidic ribosomal protei 38.2 50 0.0017 28.1 5.5 41 185-226 155-195 (213)
8 2kij_A Copper-transporting ATP 37.9 22 0.00076 27.5 3.0 30 84-115 40-69 (124)
9 2hc8_A PACS, cation-transporti 35.5 34 0.0012 26.0 3.7 30 84-115 28-57 (113)
10 3laz_A D-galactarate dehydrata 31.2 23 0.00077 27.3 2.0 32 163-196 46-77 (99)
11 3k3s_A Altronate hydrolase; st 31.1 30 0.001 26.9 2.7 33 162-196 52-84 (105)
12 3iz5_s 60S acidic ribosomal pr 25.6 82 0.0028 28.6 5.0 41 185-226 160-200 (319)
13 3n75_A LDC, lysine decarboxyla 24.8 53 0.0018 32.9 3.9 24 23-49 631-654 (715)
14 2lmc_B DNA-directed RNA polyme 20.5 1E+02 0.0035 22.7 3.8 22 169-196 61-82 (84)
No 1
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=100.00 E-value=8.6e-58 Score=435.26 Aligned_cols=209 Identities=44% Similarity=0.682 Sum_probs=192.4
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCCceeEEEEeeCCCC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPV 80 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~~~~V~g~~~AG~~ 80 (251)
|+|++||++++++.+.+. ..|+|+|.+|+||||||||+|+.++|+|++|+||||||+++|+...|+|+|+++||+.
T Consensus 6 ~~s~~eA~~~i~~~~~~~----~~e~v~l~~A~GrvLAedv~A~~~~P~f~~SamDGyAv~~~D~~~~l~v~~~i~aG~~ 81 (419)
T 2fts_A 6 LTSMDKAFITVLEMTPVL----GTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQ 81 (419)
T ss_dssp EEEHHHHHHHHHHHSCCC----CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGCSCEEEEEEECCTTSC
T ss_pred CCCHHHHHHHHHhcCCCC----CcEEEEHHHhCCCeeeeeeEeCCCCCCCCCcccceEEEeeccCCcceEEEEEEeCCCC
Confidence 789999999999988776 7899999999999999999999999999999999999999999888999999999987
Q ss_pred CCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCCce
Q psy8230 81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEE 160 (251)
Q Consensus 81 ~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (251)
....+++|+|+||||||+||+|||||||+|+++.....++ +.++
T Consensus 82 -~~~~l~~g~avrI~TGa~~P~gaDaVv~~E~~~~~~~~~~-----------------------------------~~~~ 125 (419)
T 2fts_A 82 -PTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDD-----------------------------------GTEE 125 (419)
T ss_dssp -CCCCCCTTEEEEECTTCBCCTTCCEEEEGGGEEEEEESTT-----------------------------------SSCE
T ss_pred -CCCccCCCeEEEEeCCCCCCCCCcEEEEEEeEEecccccc-----------------------------------CCCC
Confidence 6678999999999999999999999999999975321000 0123
Q ss_pred eEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCCCe
Q psy8230 161 VEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVV 240 (251)
Q Consensus 161 ~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~g~ 240 (251)
..|.|.+++++|+|||++|+|+++|++|+++|++|+|.++|+||++|+.+|+||++|||+||||||||+++++ ++.+|+
T Consensus 126 ~~v~i~~~~~~g~nIr~~Gedi~~G~~ll~~G~~l~p~~iglLas~G~~~v~V~~~prv~IistGdEl~~~g~-~~~~G~ 204 (419)
T 2fts_A 126 LEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPED-DLLPGK 204 (419)
T ss_dssp EEEEECSCCCTTTTEECTTSSBCTTCEEECTTCBCCHHHHHHHHHHTCCEEEEECCCCEEEEEECTTEECTTS-CCCTTC
T ss_pred CeEEEecCCCCCCCCccCCcCcCCCCEEECCCCCcCHHHHHHHHhCCCCeeEecCCCEEEEEEechhccCCCC-CCCCCc
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EEccCCCCcC
Q psy8230 241 TFHVPRKYLG 250 (251)
Q Consensus 241 ~~d~N~~~l~ 250 (251)
+||+|++||.
T Consensus 205 i~dsN~~~L~ 214 (419)
T 2fts_A 205 IRDSNRSTLL 214 (419)
T ss_dssp EECCHHHHHH
T ss_pred EecCchHHHH
Confidence 9999999873
No 2
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=100.00 E-value=1.2e-55 Score=418.84 Aligned_cols=201 Identities=34% Similarity=0.510 Sum_probs=188.6
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCC-------ceeEEE
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG-------KRKVVG 73 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~-------~~~V~g 73 (251)
|+|++||++++++.+.+. ..|+|++.+|+||||||||+|..++|+|++|+||||||+++|+.+ .|+|+|
T Consensus 6 ~~s~~eA~~~i~~~~~~~----~~e~v~l~~A~GrvLA~dv~a~~~~P~f~~SamDGyAv~~~D~~~a~~~~p~~l~v~~ 81 (402)
T 1uz5_A 6 VVPLEKALEVVQSFKISP----GIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRAEDTFMASEASPVRLKVIG 81 (402)
T ss_dssp CBCHHHHHHHHHHCCCCC----CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGGTTCCSSSCEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCC----CcEEEEHHHhCCCeeeeEEEcCCCCCCCcccccCcEEEeehhccccccCCCeEEEEee
Confidence 789999999999988665 789999999999999999999999999999999999999999742 489999
Q ss_pred EeeCCCCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccc
Q psy8230 74 ERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELT 153 (251)
Q Consensus 74 ~~~AG~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (251)
+++||+. ....+++|+|+||||||++|+|||+|||+|+++..+
T Consensus 82 ~i~aG~~-~~~~l~~g~a~~i~TGa~~P~GadaVV~~E~~~~~~------------------------------------ 124 (402)
T 1uz5_A 82 SVHAGEE-PKFKLGKGEAAYISTGAMLPGNADAVIQFEDVERVN------------------------------------ 124 (402)
T ss_dssp EECTTCC-CCCBCCTTEEEEECTTCBCCBTCCEEEEGGGEEEET------------------------------------
T ss_pred EEECCCC-CCCccCCCcEEEEccCCCCCCCCCEEEEEEEEEecC------------------------------------
Confidence 9999987 667899999999999999999999999999997421
Q ss_pred cCCCCceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCC
Q psy8230 154 KGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA 233 (251)
Q Consensus 154 ~~~~~~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~ 233 (251)
.+|.|.+++.+|+|||++|+|+++|++|+++|++|+|.+|++|+++|+.+|.||++|||+||||||||+++++
T Consensus 125 -------~~v~i~~~~~~g~nir~~Gedv~~G~~ll~~G~~l~p~~i~llas~G~~~V~V~~~prv~IistGdEl~~~g~ 197 (402)
T 1uz5_A 125 -------GEILIYKPAYPGLGVMKKGIDIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKVAVISTGNEIVPPGN 197 (402)
T ss_dssp -------TEEEECSCCCTTTTEECTTSSBCTTCEEECTTCBCCHHHHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTS
T ss_pred -------CEEEEeCCCCCCCCeecCCcEecCCCEEEcCCCEECHHHHHHHHhCCCceeeecCCCEEEEEEcCccccCCCC
Confidence 2688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEccCCCCcC
Q psy8230 234 HVLKPVVTFHVPRKYLG 250 (251)
Q Consensus 234 ~~~~~g~~~d~N~~~l~ 250 (251)
++.+|++||+|+++|.
T Consensus 198 -~~~~G~i~DsN~~~L~ 213 (402)
T 1uz5_A 198 -ELKPGQIYDINGRALC 213 (402)
T ss_dssp -CCCTTCEECCHHHHHH
T ss_pred -CCCCCcEEcchHHHHH
Confidence 8999999999998873
No 3
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=100.00 E-value=1.3e-55 Score=419.80 Aligned_cols=202 Identities=31% Similarity=0.463 Sum_probs=189.4
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCC--CceeEEEEeeCC
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGA--GKRKVVGERSAG 78 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~--~~~~V~g~~~AG 78 (251)
|+|++||++++++.+.++. ..|+|++.+|+||||||||+|+.++|+||+|+||||||+++|+. ..|+|+|+++||
T Consensus 7 ~~s~~eA~~~i~~~~~~~~---~~e~v~l~~A~GrvLAedv~a~~~~P~f~~SamDGyAv~~~D~~~~~~l~v~~~i~aG 83 (411)
T 1g8l_A 7 LMSLDTALNEMLSRVTPLT---AQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAG 83 (411)
T ss_dssp CBCHHHHHHHHHHHCCCCC---CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECHHHHHHCSCBCEEEEEBTT
T ss_pred CcCHHHHHHHHHhhCcCcC---CcEEEEHHHhCCCeeeeeeEcCCCCCCCcccCCCceEEeHHHcCCCceEEEEEEEECC
Confidence 7899999999999987762 47999999999999999999999999999999999999999973 469999999999
Q ss_pred CCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCC
Q psy8230 79 PVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDG 158 (251)
Q Consensus 79 ~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (251)
+. +...+++|+|+||||||++|+|||||||+|+|+..+
T Consensus 84 ~~-~~~~l~~g~a~rI~TGa~~P~gadaVV~~E~~~~~~----------------------------------------- 121 (411)
T 1g8l_A 84 QP-YHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMD----------------------------------------- 121 (411)
T ss_dssp BC-CCSCCCTTCEEEECTTCBCCTTCCEEEEGGGEEEET-----------------------------------------
T ss_pred CC-CCcccCCCcEEEEccCCCCCCCccEEEEEeeEEecC-----------------------------------------
Confidence 87 678899999999999999999999999999997421
Q ss_pred ceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCC
Q psy8230 159 EEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP 238 (251)
Q Consensus 159 ~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~ 238 (251)
..|.|.+++++|+|||++|+|+++|++|+++|++|+|.+|++||++|+.+|.||++|||+||||||||+++++ ++.+
T Consensus 122 --~~v~i~~~~~~g~~ir~~Gedv~~G~~vl~~G~~l~p~~i~llas~G~~~V~V~~~~rv~iistGdEl~~~g~-~~~~ 198 (411)
T 1g8l_A 122 --NGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQ-PLGD 198 (411)
T ss_dssp --TEEEECSCCCTTTTEECTTSSBCTTSEEECTTCBCCTTTHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTS-CCCS
T ss_pred --CEEEEeCCCCCCCCEecCCcEecCCCEEEcCCcEECHHHHHHHHhCCCceEEecCCCEEEEEEcCccccCCCC-CCCC
Confidence 2688999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CeEEccCCCCcC
Q psy8230 239 VVTFHVPRKYLG 250 (251)
Q Consensus 239 g~~~d~N~~~l~ 250 (251)
|++||+|+++|.
T Consensus 199 G~i~dsn~~~L~ 210 (411)
T 1g8l_A 199 GQIYDTNRLAVH 210 (411)
T ss_dssp SCEECCHHHHHH
T ss_pred CcEEcCchHHHH
Confidence 999999999873
No 4
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=100.00 E-value=3.4e-55 Score=415.13 Aligned_cols=202 Identities=31% Similarity=0.506 Sum_probs=187.7
Q ss_pred CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCC-------ceeEEE
Q psy8230 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG-------KRKVVG 73 (251)
Q Consensus 1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~-------~~~V~g 73 (251)
|+|++||++++++.+.+.. ..|+|++.+|+||||||||+|..++|+|++|+||||||+++|+.+ .|+|+|
T Consensus 7 ~~s~~eA~~~i~~~~~~~~---~~e~v~l~~A~GrvLA~dv~a~~~~P~f~~SamDGyAv~~~d~~~a~~~~p~~l~v~~ 83 (396)
T 1wu2_A 7 LVPYREALKLLLDDINEIE---DTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDGYAIRAEDTFQAREYNPIELTVIE 83 (396)
T ss_dssp CBCHHHHHHHHHHHCCCCC---CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGGTTCBTTBCEEEEEEE
T ss_pred CCCHHHHHHHHHhhccCcC---CceEEEHHHhCCCeeeeeEEcCCCCCCCcccccCcEEEehhhccccccCCCeEEEEee
Confidence 7899999999999886542 579999999999999999999999999999999999999999742 489999
Q ss_pred EeeCCCCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccc
Q psy8230 74 ERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELT 153 (251)
Q Consensus 74 ~~~AG~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (251)
+++||+. ....+++|+|+||||||++|+|||+|||+|+++..+
T Consensus 84 ~i~aG~~-~~~~l~~g~a~~I~TGa~~P~GadaVV~~E~~~~~~------------------------------------ 126 (396)
T 1wu2_A 84 EVPAGNV-AKEEVTTGKAIKVLTGTRIPKGANAVIMQEMVKREG------------------------------------ 126 (396)
T ss_dssp ECCTTCC-CSSCCCTTEEEEECTTCBCCTTCCEEEEGGGSEEET------------------------------------
T ss_pred EEECCCC-CCCccCCCcEEEEccCCCCCCCCCEEEEEEEEEecC------------------------------------
Confidence 9999987 677899999999999999999999999999997421
Q ss_pred cCCCCceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCccc-CCC
Q psy8230 154 KGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELD-EPD 232 (251)
Q Consensus 154 ~~~~~~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~-~~~ 232 (251)
..|.|.+++.+|+|||++|+|+++|++|+++|++|+|.+|++|+++|+.+|.||++|||+||||||||+ +++
T Consensus 127 -------~~v~i~~~~~~g~nir~~Gedv~~G~~ll~~G~~l~p~~i~llas~G~~~V~V~~~prv~IistGdEl~~~~g 199 (396)
T 1wu2_A 127 -------DKIYVLRPVAPGQNIAFTGEDVKKGEVVLRKGTILRPQDVAMLKALGIKKVPVKVKPKVGIIITGSELIEEPS 199 (396)
T ss_dssp -------TEEEECSCCCTTTTEECTTSSBCTTCEEECTTCBCCHHHHHHHHHTTCSEEEEECCCEEEEEEECTTEESSCC
T ss_pred -------CEEEEeCCCCCCCCcccCCcEEcCCCEeecCCcEEcHHHHHHHHhCCCceeeecCCCEEEEEEcCcccccCCC
Confidence 278899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCC-CCCCeEEccCCCCcC
Q psy8230 233 AHV-LKPVVTFHVPRKYLG 250 (251)
Q Consensus 233 ~~~-~~~g~~~d~N~~~l~ 250 (251)
+ + +++|++||+|+++|.
T Consensus 200 ~-~~~~~G~i~Dsn~~~L~ 217 (396)
T 1wu2_A 200 E-EGFKEGKIVETNSIMLQ 217 (396)
T ss_dssp H-HHHHTTCEECCHHHHHH
T ss_pred C-cccCCCcEecchHHHHH
Confidence 8 6 889999999999873
No 5
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=95.90 E-value=0.0014 Score=55.92 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCeEEEecCCeEEEEecCCcccC
Q psy8230 198 PELGLLASVGVTSITVYKKPIIHILSTGNELDE 230 (251)
Q Consensus 198 ~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~ 230 (251)
.++|+|++.+.++ .++++|||+||+|||||+.
T Consensus 13 ~~~g~~~~~~~~~-~~~~~~rvaIistGdEl~~ 44 (185)
T 3rfq_A 13 SDLGYSVAPMEQG-AELVVGRALVVVVDDRTAH 44 (185)
T ss_dssp -----------------CCEEEEEEEECHHHHT
T ss_pred hhhhhhhcccccc-cCCCCCEEEEEEECcccCC
Confidence 5789999999999 9999999999999999974
No 6
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=47.26 E-value=22 Score=32.34 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=31.3
Q ss_pred cccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEe
Q psy8230 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVY 214 (251)
Q Consensus 181 Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~ 214 (251)
|-..|++++.+|+.|+...+..|...|++++.+.
T Consensus 156 d~~tGEvl~~a~~~it~~~l~~l~~~gi~~i~~l 189 (296)
T 3lti_A 156 DESTGELICAANMELSLDLLAXLSQSGHKRIETL 189 (296)
T ss_dssp CTTTCCEEECTTCBCCHHHHHHHHHTTCCEEEEE
T ss_pred cccccceeeccccccCHHHHHHHHhcCcceEEEE
Confidence 4578999999999999999999999999999864
No 7
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=38.20 E-value=50 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=33.7
Q ss_pred CCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCC
Q psy8230 185 GATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGN 226 (251)
Q Consensus 185 G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGd 226 (251)
.-+|+++|++|+|.+-.+|.-+|+.-.+. +--..+++..|.
T Consensus 155 d~~v~k~G~~v~~~~A~lL~~l~i~p~~~-~l~l~~~~~~g~ 195 (213)
T 3jsy_A 155 DKVVVKKGEVVSPKLAAVLDRLGIKPIKV-GLNILAVYEDGI 195 (213)
T ss_dssp CEEEECTTSBCCHHHHHHHHHTTCCCEEE-SCEEEEEEETTE
T ss_pred ceEEEecCCCcCHHHHHHHHHcCCCcEEE-EEEEEEEEeCCc
Confidence 46899999999999999999999988764 555566776664
No 8
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=37.92 E-value=22 Score=27.54 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCCCCCCeEEEccCCCCCCCCCEEEEeeeeee
Q psy8230 84 SPLKSSQCYRINTGAPIPPGADSVVQVEDTEL 115 (251)
Q Consensus 84 ~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~ 115 (251)
..|.+|+.+.|..|..|| ||.+|-.-...+
T Consensus 40 ~~l~~GDiv~v~~G~~iP--aDg~vi~g~~~v 69 (124)
T 2kij_A 40 ELVQRGDIIKVVPGGKFP--VDGRVIEGHSMV 69 (124)
T ss_dssp TTCCTTCEEECCTTCBCS--SCEEECSCCCEE
T ss_pred HHCCCCCEEEECCCCEEE--eeEEEEEccEEE
Confidence 368899999999999999 899886555433
No 9
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=35.50 E-value=34 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCCCCCeEEEccCCCCCCCCCEEEEeeeeee
Q psy8230 84 SPLKSSQCYRINTGAPIPPGADSVVQVEDTEL 115 (251)
Q Consensus 84 ~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~ 115 (251)
..|.+|+-+.+..|..+| ||.+|-.-.+.+
T Consensus 28 ~~l~~GDiv~v~~G~~iP--aDg~v~~g~~~v 57 (113)
T 2hc8_A 28 EEVAVGDIVIVRPGEKIP--VDGVVVEGESYV 57 (113)
T ss_dssp GGCCTTCEEEECTTCBCC--SEEEEEECCEEE
T ss_pred HHCCCCCEEEECCCCEEe--eeEEEEEceEEE
Confidence 368899999999999999 899987655544
No 10
>3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.92A {Escherichia coli}
Probab=31.20 E-value=23 Score=27.28 Aligned_cols=32 Identities=22% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEecCCCCCCCeecCcccccCCCEEecCCCeeC
Q psy8230 163 IKILKTPTKGQDIRVKGIDIRKGATILEEGNLIG 196 (251)
Q Consensus 163 i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~ 196 (251)
+.+...+..|.-|-. .||++|+.|++-|+.|+
T Consensus 46 v~~~~~Ip~GHKiAl--~dI~~Ge~ViKYG~~IG 77 (99)
T 3laz_A 46 LELIEHIPQGHKVAL--LDIPANGEIIRYGEVIG 77 (99)
T ss_dssp CBCSSCBCTTCEEES--SCBCTTCEEEETTEEEE
T ss_pred eEECcCCCCCCEEEE--cccCCCCeEEECCcChh
Confidence 344455556655544 47777888877777764
No 11
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=31.10 E-value=30 Score=26.86 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=23.6
Q ss_pred EEEEecCCCCCCCeecCcccccCCCEEecCCCeeC
Q psy8230 162 EIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIG 196 (251)
Q Consensus 162 ~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~ 196 (251)
.+.+...++.|.-|-. .||++|+.|++-|+.|+
T Consensus 52 ~v~l~~dIP~GHKiAl--~dI~~Ge~ViKYG~~IG 84 (105)
T 3k3s_A 52 TVTLRQDVARGHKFAL--TDIAKGANVIKYGLPIG 84 (105)
T ss_dssp EEECSSCBCTTCEEES--SCBCTTCEEEETTEEEE
T ss_pred EEEECccCCCCCEEEE--cccCCCCeEEECCceeE
Confidence 4556666777766655 57888888888888775
No 12
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=25.64 E-value=82 Score=28.59 Aligned_cols=41 Identities=22% Similarity=0.500 Sum_probs=33.4
Q ss_pred CCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCC
Q psy8230 185 GATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGN 226 (251)
Q Consensus 185 G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGd 226 (251)
.-+|+++|++|++.+-.+|.-+||.-.+. +--..+++..|.
T Consensus 160 d~~v~k~G~~v~~~~A~lL~~l~i~p~~f-~l~l~~~~d~g~ 200 (319)
T 3iz5_s 160 PVELIKKGDKVGSSESALLAKLGIRPFSY-GLVITNVYDSGS 200 (319)
T ss_dssp CEEEECTTSBCCHHHHHHHHHHTCCCEEE-SCEEEEEEETTE
T ss_pred ceEEEecCCCcCHHHHHHHHHhCCCceEE-EeeeeEEEeCCc
Confidence 36899999999999999999999987765 555566666664
No 13
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=24.83 E-value=53 Score=32.92 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.2
Q ss_pred ccEEEecccccCceeccccccCCCCCC
Q psy8230 23 QKQSLSCRQAGGYIVAETTVAKDDLPP 49 (251)
Q Consensus 23 ~~e~v~l~~A~GrVlAedv~A~~~~P~ 49 (251)
.+|.|++.+|.|||.||-|.. +||
T Consensus 631 ~~e~v~l~~a~GrI~ae~i~p---YPP 654 (715)
T 3n75_A 631 MTEEVYLDEMVGRINANMILP---YPP 654 (715)
T ss_dssp CEEEEEGGGCTTCBBSSCBEE---ETT
T ss_pred CeEEEEccccCCcEEeeecee---cCC
Confidence 679999999999999988753 555
No 14
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=20.49 E-value=1e+02 Score=22.71 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=13.0
Q ss_pred CCCCCCeecCcccccCCCEEecCCCeeC
Q psy8230 169 PTKGQDIRVKGIDIRKGATILEEGNLIG 196 (251)
Q Consensus 169 ~~~g~nIr~~G~Di~~G~~ll~~G~~I~ 196 (251)
+.++++++ +..|+.| ++|+.|+
T Consensus 61 Ip~~~~l~-----V~eGd~V-~~G~~Lt 82 (84)
T 2lmc_B 61 IPKWRQLN-----VFEGERV-ERGDVIS 82 (84)
T ss_dssp CCTTSCCS-----SCTTEEE-CBSCSSB
T ss_pred CCCCCceE-----eCCCCEE-CCCCCcc
Confidence 44556654 5566665 6676664
Done!