RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8230
(251 letters)
>gnl|CDD|238452 cd00887, MoeA, MoeA family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (MoCF), an
essential cofactor of a diverse group of redox enzymes.
MoCF biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and eukaryotes. MoCF
contains a tricyclic pyranopterin, termed molybdopterin
(MPT). MoeA, together with MoaB, is responsible for the
metal incorporation into MPT, the third step in MoCF
biosynthesis. The plant homolog Cnx1 is a MoeA-MogA
fusion protein. The mammalian homolog gephyrin is a
MogA-MoeA fusion protein, that plays a critical role in
postsynaptic anchoring of inhibitory glycine receptors
and major GABAa receptor subtypes.
Length = 394
Score = 182 bits (464), Expect = 2e-55
Identities = 84/233 (36%), Positives = 113/233 (48%), Gaps = 51/233 (21%)
Query: 4 VEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIAS 63
VEAA++L+L +++ +A G ++AE VA DLPPFD S DGYAV A+
Sbjct: 1 VEAARELLLALAPPLG----TETVPLLEALGRVLAEDVVAPIDLPPFDNSAMDGYAVRAA 56
Query: 64 DGAG---KRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKD 120
D AG +VVGE AG PL + RI TGAP+P GAD+VV VEDTE G
Sbjct: 57 DTAGASVTLRVVGEIPAG-EPPDGPLGPGEAVRIMTGAPLPEGADAVVMVEDTEEEGG-- 113
Query: 121 GEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGI 180
+ I K GQ+IR G
Sbjct: 114 -----------------------------------------RVTITKPVKPGQNIRRAGE 132
Query: 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA 233
DI+ G +L G + P ++GLLAS+G+ + VY++P + I+STG+EL EP
Sbjct: 133 DIKAGDVLLPAGTRLTPADIGLLASLGIAEVPVYRRPRVAIISTGDELVEPGE 185
>gnl|CDD|215376 PLN02699, PLN02699, Bifunctional molybdopterin
adenylyltransferase/molybdopterin molybdenumtransferase.
Length = 659
Score = 159 bits (404), Expect = 4e-45
Identities = 88/238 (36%), Positives = 119/238 (50%), Gaps = 45/238 (18%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQ--SLSCRQAGGYIVAETTVAKDDLPPFDASIKDGY 58
M+ VE A ++L + + +A G ++AE A D LPP+ AS+KDGY
Sbjct: 7 MISVEEALSIVL------SVAARLSPVIVPLHEALGKVLAEDIRAPDPLPPYPASVKDGY 60
Query: 59 AVIASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKG 118
AV+ASDG G+ V+ E AG L + TG PIP GAD+VVQVEDTE+
Sbjct: 61 AVVASDGPGEYPVITESRAGNDGLGVTLTPGTVAYVTTGGPIPDGADAVVQVEDTEV--- 117
Query: 119 KDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVK 178
V+D + + ++IL +KGQDIR
Sbjct: 118 ---------------------VEDPLDGSK-------------RVRILSQASKGQDIRPV 143
Query: 179 GIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVL 236
G DI K A +L+ G +G E+GLLA+VGVT + VY +P + ILSTG+EL EP L
Sbjct: 144 GCDIEKDAKVLKAGERLGASEIGLLATVGVTMVKVYPRPTVAILSTGDELVEPTTGTL 201
>gnl|CDD|217567 pfam03453, MoeA_N, MoeA N-terminal region (domain I and II). This
family contains two structural domains. One of these
contains the conserved DGXA motif. This region is found
in proteins involved in biosynthesis of molybdopterin
cofactor however the exact molecular function of this
region is uncertain.
Length = 163
Score = 146 bits (370), Expect = 3e-44
Identities = 76/210 (36%), Positives = 102/210 (48%), Gaps = 50/210 (23%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
++ VE A ++IL+ + + ++ +A G ++AE VA DLPPFD S DGYAV
Sbjct: 1 LISVEEALRIILELA--PPLPETE-TVPLFEALGRVLAEDIVAPRDLPPFDRSAMDGYAV 57
Query: 61 IASDGAGKR---KVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSK 117
+ D AG KVVGE +AG V + + RI TGAPIP GAD+VV VEDTE
Sbjct: 58 RSEDTAGASEDLKVVGEIAAGEVPDL-EVGPGEAVRIMTGAPIPEGADAVVMVEDTEE-- 114
Query: 118 GKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRV 177
E ++IL+ GQ+IR
Sbjct: 115 -----------------------------------------EGDRVRILRPVKPGQNIRR 133
Query: 178 KGIDIRKGATILEEGNLIGPPELGLLASVG 207
KG DI+KG +L +G + P ELGLLAS+G
Sbjct: 134 KGEDIKKGDVLLRKGTRLTPAELGLLASLG 163
>gnl|CDD|223380 COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme
metabolism].
Length = 404
Score = 146 bits (371), Expect = 1e-41
Identities = 81/234 (34%), Positives = 116/234 (49%), Gaps = 49/234 (20%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
+L VE A +++L + +++ +A G ++AE VA D+PPFD S DGYAV
Sbjct: 6 LLPVEEALEILLAHA---SPLGETETVPLEEALGRVLAEDVVAPLDVPPFDRSAMDGYAV 62
Query: 61 IASD--GAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKG 118
A D GA +VVGE +AG V + + RI TGAP+P GAD+VV VEDT
Sbjct: 63 RAEDTDGAATLRVVGEIAAGEV-PDLEVGPGEAVRIMTGAPLPEGADAVVMVEDTR---- 117
Query: 119 KDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVK 178
++G++V I + GQ++R
Sbjct: 118 EEGDDVRIL---------------------------------------RAVKPGQNVRRA 138
Query: 179 GIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPD 232
G D+ KG IL G + P E+ LLAS+G+ + VY+KP + I+STG+EL EP
Sbjct: 139 GEDVAKGDVILRAGTRLTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPG 192
>gnl|CDD|237732 PRK14498, PRK14498, putative molybdopterin biosynthesis protein
MoeA/LysR substrate binding-domain-containing protein;
Provisional.
Length = 633
Score = 133 bits (338), Expect = 8e-36
Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 52/238 (21%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
++ +E A++++ + G ++ L +A G ++AE A D+PPFD S DGYAV
Sbjct: 9 LVSLEEAREILESLLSELPLGTEEVPLE--EALGRVLAEDVYAPIDVPPFDRSAMDGYAV 66
Query: 61 IASDGAGKR-------KVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDT 113
A+D G K+ GE AG ++ + I TGAPIP GAD+VV VEDT
Sbjct: 67 RAADTFGASEANPVRLKLGGEVHAG-EAPDVEVEPGEAVEIATGAPIPRGADAVVMVEDT 125
Query: 114 ELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQ 173
E + ++ ++I + G+
Sbjct: 126 E----EVDDDT--------------------------------------VEIYRPVAPGE 143
Query: 174 DIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEP 231
++R G DI G IL +G + P ++G LA+ GV + VYKKP + I+STG+EL EP
Sbjct: 144 NVRPAGEDIVAGELILPKGTRLTPRDIGALAAGGVAEVPVYKKPRVGIISTGDELVEP 201
>gnl|CDD|182643 PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA;
Provisional.
Length = 411
Score = 109 bits (275), Expect = 6e-28
Identities = 64/213 (30%), Positives = 90/213 (42%), Gaps = 48/213 (22%)
Query: 22 QQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKR--KVVGERSAG- 78
++L Q G I A V+ D+P FD S DGYAV +D A + V G+ AG
Sbjct: 25 TATETLPLVQCFGRITASDIVSPLDVPGFDNSAMDGYAVRLADLASGQPLPVAGKAFAGQ 84
Query: 79 PVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDI 138
P P + C RI TGAP+P G ++VV E TE + +
Sbjct: 85 PFHGEWPAGT--CIRIMTGAPVPEGCEAVVMQEQTEQT------------------DDGV 124
Query: 139 RVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPP 198
R V GQ+IR +G DI +GA + G +
Sbjct: 125 RFTAEVRS-------------------------GQNIRRRGEDISQGAVVFPAGTRLTTA 159
Query: 199 ELGLLASVGVTSITVYKKPIIHILSTGNELDEP 231
EL +LAS+G+ + V +K + + STG+EL P
Sbjct: 160 ELPVLASLGIAEVPVVRKVRVALFSTGDELQLP 192
>gnl|CDD|172968 PRK14497, PRK14497, putative molybdopterin biosynthesis protein
MoeA/unknown domain fusion protein; Provisional.
Length = 546
Score = 109 bits (274), Expect = 2e-27
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 43/225 (19%)
Query: 7 AQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGA 66
+ I F+ + + + + + GY+ AE ++ D PPF S DGYA+ +S
Sbjct: 13 IDEAIKVFLSSLNFKPKIVKVEVKDSFGYVSAEDLMSPIDYPPFSRSTVDGYALKSSCTP 72
Query: 67 GKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEI 126
G+ KV+ + G K +K + ++TG+ IP GAD+V++VE+T++ G
Sbjct: 73 GEFKVIDKIGIGEFKEIH-IKECEAVEVDTGSMIPMGADAVIKVENTKVINGN------- 124
Query: 127 KILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGA 186
IKI K GQ+I G DI KG+
Sbjct: 125 -----------------------------------FIKIDKKINFGQNIGWIGSDIPKGS 149
Query: 187 TILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEP 231
IL +G +I ++GLLAS+G++S+ VY+KP I++++TG+EL EP
Sbjct: 150 IILRKGEVISHEKIGLLASLGISSVKVYEKPKIYLIATGDELVEP 194
>gnl|CDD|237729 PRK14491, PRK14491, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoeA;
Provisional.
Length = 597
Score = 109 bits (274), Expect = 3e-27
Identities = 60/232 (25%), Positives = 99/232 (42%), Gaps = 48/232 (20%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
L V IL + + + ++ + G ++A+ ++ ++P S DGYA
Sbjct: 198 FLSVSQGLDKILSLVT---PVTETEDVALDELDGRVLAQDVISPVNVPQHTNSAMDGYAF 254
Query: 61 IASD-GAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGK 119
+ D +VGE AG + L++ + RI TGAP+P GAD+VV E
Sbjct: 255 RSDDLEPESYTLVGEVLAG-HQYDGTLQAGEAVRIMTGAPVPAGADTVVMRELATQ---- 309
Query: 120 DGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKG 179
DG++V + IK GQ++R+ G
Sbjct: 310 DGDKVSF---------------------------------DGGIK------AGQNVRLAG 330
Query: 180 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEP 231
D+ +G L G + PE GLLAS+G + V+++P + + STG+E+ P
Sbjct: 331 EDLAQGQVALAAGTRLSAPEQGLLASLGFAEVPVFRRPKVAVFSTGDEVQAP 382
>gnl|CDD|237789 PRK14690, PRK14690, molybdopterin biosynthesis protein MoeA;
Provisional.
Length = 419
Score = 70.3 bits (172), Expect = 6e-14
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 45/211 (21%)
Query: 25 QSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGY--AVIASDGAGKRKVVGERSAGPVKS 82
+ L A G+++A VA PP S DGY A A +GA ++ R+A V
Sbjct: 43 KELDLSDALGHVLAHDAVALRSNPPQANSAVDGYGFAGAAPEGAQVLPLIEGRAAAGVPF 102
Query: 83 ASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKD 142
+ + RI TGA +P G D+VV ED DG + P K
Sbjct: 103 SGRVPEGMALRILTGAALPEGVDTVVLEEDVAG----DGHRIA---FHGPLK-------- 147
Query: 143 SVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGL 202
G + R G D+ G L G + P +L L
Sbjct: 148 ----------------------------MGANTRKAGEDVIAGDVALPAGRRLTPADLAL 179
Query: 203 LASVGVTSITVYKKPIIHILSTGNELDEPDA 233
L++VG+T ++V + + +LSTG+EL EP A
Sbjct: 180 LSAVGLTRVSVRRPLRVAVLSTGDELVEPGA 210
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase.
Length = 334
Score = 30.0 bits (68), Expect = 1.2
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 102 PGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVE---DTELTKGKDG 158
PG + Q+ D + E +E+KI+ T S V D+ L G
Sbjct: 248 PGTRAKFQLVD---DGDGEREVLELKIITTRVCEAGGEQTGSADAVTFKKDSLLVPCGGG 304
Query: 159 EEVEIKILKTPTK 171
+E+ ++ P K
Sbjct: 305 TWLEVLEVQPPGK 317
>gnl|CDD|218964 pfam06262, DUF1025, Possibl zinc metallo-peptidase. This is
possibly a family of bacterial zinc metallo-peptidases.
Although they carry the HExxHxxGxxD motif, they are
missing a final methionine which would class them as
Met-zincins.
Length = 96
Score = 28.3 bits (64), Expect = 1.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 188 ILEEGNLIGPPEL-GLLASVGVT------------SITVYKKPIIHILSTGNELDEPDAH 234
+L E + PP+L GL + +T IT+Y++PI+ EL E H
Sbjct: 15 VLRELGIDDPPDLLGLYEGIPLTERSVTDSGELPDRITLYRRPILDEWRDREELGELVRH 74
Query: 235 VL 236
V+
Sbjct: 75 VV 76
>gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R. This family consists of an
exoribonuclease, ribonuclease R, also called VacB. It is
one of the eight exoribonucleases reported in E. coli
and is broadly distributed throughout the bacteria. In
E. coli, double mutants of this protein and
polynucleotide phosphorylase are not viable. Scoring
between trusted and noise cutoffs to the model are
shorter, divergent forms from the Chlamydiae, and
divergent forms from the Campylobacterales (including
Helicobacter pylori) and Leptospira interrogans
[Transcription, Degradation of RNA].
Length = 709
Score = 29.2 bits (66), Expect = 2.3
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 32/95 (33%)
Query: 120 DGEEVEIKILKTPTKG--QDIRVKDSV------------------------------VQV 147
G+ V ++I P G + RV + + +
Sbjct: 105 HGDRVLVRITGKPDGGDRFEARVIKILERANDQIVGTFYIENGIGFVIPDDKRIYLDIFI 164
Query: 148 EDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDI 182
++ ++G++V ++I K P + + K ++I
Sbjct: 165 PPEQILGAEEGDKVLVEITKYPDRNRPAIGKVVEI 199
>gnl|CDD|240572 cd12952, MMP_ACEL2062, Minimal MMP-like domain found in
Acidothermus cellulolyticus hypothetical protein
ACEL2062 and similar protein. The subfamily includes an
uncharacterized protein from Acidothermus cellulolyticus
(ACEL2062) and its homologs from bacteria. Although its
biological role remains unclear, ACEL2062 contains a
minimal metalloprotease (MMP)-like domain consisting of
3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x
could be any amino acid) motif. It may belong to a
superfamily of bacterial zinc metallo-peptidases, which
is characterized by a conserved HExxHxxGxxD motif.
Length = 117
Score = 27.9 bits (63), Expect = 2.7
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 188 ILEEGNLIGPPEL-GLLASVGVTS------------ITVYKKPIIHILSTGNELDEPDAH 234
LE + PPEL GL V +T IT++++P++ T EL E H
Sbjct: 39 TLEALGIPDPPELLGLYEGVPLTERSVSDSGVLPDRITLFRRPLLRYCRTREELREEVRH 98
Query: 235 VL 236
+
Sbjct: 99 TV 100
>gnl|CDD|224039 COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid
transport and metabolism].
Length = 431
Score = 28.4 bits (64), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 192 GNLIGPPELGLLASVGVTS 210
GNLI PP LGL A V
Sbjct: 22 GNLIFPPMLGLHAGEHVWP 40
>gnl|CDD|114257 pfam05525, Branch_AA_trans, Branched-chain amino acid transport
protein. This family consists of several bacterial
branched-chain amino acid transport proteins which are
responsible for the transport of leucine, isoleucine and
valine via proton motive force.
Length = 428
Score = 28.3 bits (64), Expect = 4.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 192 GNLIGPPELGLLASVGVTS 210
GNLI PP LG A V
Sbjct: 20 GNLIFPPMLGQAAGSNVWI 38
>gnl|CDD|164761 MTH00216, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 327
Score = 27.4 bits (61), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 185 GATILEEGNLIGPPELGLLASVGVTSITVY 214
G E G LI ++G+L + ++SI+VY
Sbjct: 93 GVIPYERGVLISDFKIGILYILAISSISVY 122
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.134 0.372
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,543,104
Number of extensions: 1198639
Number of successful extensions: 852
Number of sequences better than 10.0: 1
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 31
Length of query: 251
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 156
Effective length of database: 6,723,972
Effective search space: 1048939632
Effective search space used: 1048939632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (25.9 bits)