RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8230
(251 letters)
>d2ftsa2 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 181
Score = 116 bits (290), Expect = 6e-33
Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 40/215 (18%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
+ ++ A +L+ + ++ R G ++A+ AKD+LPPF AS+KDGYAV
Sbjct: 6 LTSMDKAFITVLEMTPV----LGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAV 61
Query: 61 IASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKD 120
A+DG G R ++GE AG + + Q R+ TGAPIP GAD+VVQVEDTEL + D
Sbjct: 62 RAADGPGDRFIIGESQAGE-QPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESD 120
Query: 121 GEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGI 180
EE+E++IL GQDIR G
Sbjct: 121 DGT-----------------------------------EELEVRILVQARPGQDIRPIGH 145
Query: 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYK 215
DI++G +L +G +GP E+GLLA+VGVT + V K
Sbjct: 146 DIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNK 180
>d2nqra2 b.103.1.1 (A:7-177) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Escherichia
coli [TaxId: 562]}
Length = 171
Score = 102 bits (254), Expect = 1e-27
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 49/218 (22%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
++ ++ A +L + +++L Q G I+A V+ D+P FD S DGYAV
Sbjct: 1 LMSLDTALNEMLSRVTPLT---AQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAV 57
Query: 61 IASD--GAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKG 118
+D V G+ AG + C RI TGAP+P G ++VV E TE
Sbjct: 58 RLADIASGQPLPVAGKSFAGQPYHG-EWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQ--- 113
Query: 119 KDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVK 178
+ ++ GQ+IR +
Sbjct: 114 ----------------------------------------MDNGVRFTAEVRSGQNIRRR 133
Query: 179 GIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKK 216
G +I GA + G + EL ++AS+G+ + V +K
Sbjct: 134 GENISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRK 171
>d1wu2a2 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Pyrococcus
horikoshii, PH1647 [TaxId: 53953]}
Length = 175
Score = 79.9 bits (196), Expect = 4e-19
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 52/219 (23%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
++ A KL+LD I + + + R+A G ++AE V + D+PPFD + DGYA+
Sbjct: 2 LVPYREALKLLLDDINEIE---DTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDGYAI 58
Query: 61 IASDGAGKRKV------VGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTE 114
A D R+ V E + + + + ++ TG IP GA++V+ E +
Sbjct: 59 RAEDTFQAREYNPIELTVIEEVPAGNVAKEEVTTGKAIKVLTGTRIPKGANAVIMQEMVK 118
Query: 115 LSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQD 174
E +I +L+ GQ+
Sbjct: 119 R-------------------------------------------EGDKIYVLRPVAPGQN 135
Query: 175 IRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITV 213
I G D++KG +L +G ++ P ++ +L ++G+ + V
Sbjct: 136 IAFTGEDVKKGEVVLRKGTILRPQDVAMLKALGIKKVPV 174
>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Archaeon
Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Length = 176
Score = 77.6 bits (190), Expect = 3e-18
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 53/222 (23%)
Query: 1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
++ +E A +++ F + + + + G I AE + D+PPFD + DGYAV
Sbjct: 2 VVPLEKALEVVQSFKISPG----IEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAV 57
Query: 61 IASD--GAGKRKVVGERSAGPVKSASP----LKSSQCYRINTGAPIPPGADSVVQVEDTE 114
A D A + V + G V + L + I+TGA +P AD+V+Q ED
Sbjct: 58 RAEDTFMASEASPVRLKVIGSVHAGEEPKFKLGKGEAAYISTGAMLPGNADAVIQFEDV- 116
Query: 115 LSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQD 174
+ EI I K G
Sbjct: 117 ------------------------------------------ERVNGEILIYKPAYPGLG 134
Query: 175 IRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKK 216
+ KGIDI KG ++++G +G + LL++VG+ + V++K
Sbjct: 135 VMKKGIDIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRK 176
>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus
horikoshii, PH1647 [TaxId: 53953]}
Length = 144
Score = 29.8 bits (66), Expect = 0.14
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 216 KPIIHILSTGNELDEPDA 233
KP + I+ TG+EL E +
Sbjct: 2 KPKVGIIITGSELIEEPS 19
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal
DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Length = 63
Score = 27.8 bits (62), Expect = 0.22
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 8 QKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKD 45
I + I +N+ Q + + + GY V + TV++D
Sbjct: 6 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRD 43
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal
DNA-binding domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 75
Score = 27.8 bits (62), Expect = 0.28
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 8 QKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKD 45
I + I +N Q + + + G+ V + TV++D
Sbjct: 4 HIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRD 41
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon
Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Length = 148
Score = 27.9 bits (61), Expect = 0.71
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 217 PIIHILSTGNELDEPD 232
P + ++STGNE+ P
Sbjct: 1 PKVAVISTGNEIVPPG 16
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 155
Score = 28.0 bits (61), Expect = 0.73
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 217 PIIHILSTGNELDEPD 232
P++ ++STGNEL P+
Sbjct: 1 PVVAVMSTGNELLNPE 16
>d3e11a1 d.92.1.17 (A:1-113) Uncharacterized protein Acel_2062
{Acidothermus cellulolyticus [TaxId: 28049]}
Length = 113
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 197 PPELGLLASVGVTS------------ITVYKKPIIHILSTGNELDEPDAHVL 236
P LGL + +T I +Y+ I + T +E+ + +
Sbjct: 42 PELLGLYVGIPLTERTTAYGGVLPDRIIIYRNTICALCETESEVIDEVRKTV 93
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
{Thermus thermophilus [TaxId: 274]}
Length = 107
Score = 24.7 bits (54), Expect = 5.4
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 211 ITVYKKPIIHILSTGNELDEPDAHVL 236
I +Y + + G + + +
Sbjct: 67 IALYYGSFLEVAGEGFDWEAEVWETM 92
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli
[TaxId: 562]}
Length = 149
Score = 25.1 bits (54), Expect = 5.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 219 IHILSTGNELDEPD 232
+ + STG+EL P
Sbjct: 3 VALFSTGDELQLPG 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.134 0.372
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 901,635
Number of extensions: 42599
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 17
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (23.9 bits)