Query psy8232
Match_columns 249
No_of_seqs 118 out of 1041
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:03:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00813 sss transporter, SSS 100.0 1.9E-40 4E-45 299.5 24.1 245 2-247 11-262 (407)
2 PF00474 SSF: Sodium:solute sy 100.0 1.8E-40 4E-45 299.4 14.8 242 2-245 14-259 (406)
3 PRK09395 actP acetate permease 100.0 8.9E-39 1.9E-43 298.1 24.4 242 2-246 77-321 (551)
4 PRK12488 acetate permease; Pro 100.0 1.1E-38 2.5E-43 297.0 24.2 243 2-247 75-320 (549)
5 TIGR02121 Na_Pro_sym sodium/pr 100.0 1.9E-37 4.1E-42 285.6 25.1 237 2-245 44-288 (487)
6 TIGR02711 symport_actP cation/ 100.0 7.8E-38 1.7E-42 291.4 22.7 242 2-246 75-319 (549)
7 PRK09442 panF sodium/panthothe 100.0 8.9E-37 1.9E-41 281.0 25.8 241 2-246 49-295 (483)
8 PRK10484 putative transporter; 100.0 1E-36 2.2E-41 283.0 25.3 245 2-247 46-303 (523)
9 TIGR03648 Na_symport_lg probab 100.0 2.6E-36 5.6E-41 281.8 21.8 239 2-242 40-293 (552)
10 PRK15419 proline:sodium sympor 100.0 8.6E-36 1.9E-40 275.5 24.2 217 2-225 48-272 (502)
11 TIGR02119 panF sodium/pantothe 100.0 5E-35 1.1E-39 268.7 25.1 241 2-246 48-294 (471)
12 KOG2349|consensus 100.0 5.5E-36 1.2E-40 272.9 8.9 244 2-245 53-297 (585)
13 COG0591 PutP Na+/proline sympo 100.0 2E-33 4.3E-38 258.6 24.1 239 2-244 46-292 (493)
14 COG4145 PanF Na+/panthothenate 100.0 5.7E-32 1.2E-36 231.4 21.8 239 1-243 46-290 (473)
15 COG4147 DhlC Predicted symport 100.0 2.9E-31 6.2E-36 233.8 18.1 243 4-246 51-295 (529)
16 COG4146 Predicted symporter [G 99.9 1.5E-26 3.2E-31 198.3 10.6 245 2-247 48-305 (571)
17 KOG3761|consensus 99.9 5.4E-23 1.2E-27 174.4 3.5 238 3-247 59-301 (591)
18 KOG2348|consensus 99.5 2.8E-14 6.1E-19 125.8 4.5 237 3-245 60-311 (667)
19 PF03845 Spore_permease: Spore 98.6 1.3E-05 2.9E-10 70.2 20.8 127 15-142 20-148 (320)
20 TIGR00912 2A0309 spore germina 98.5 3E-05 6.5E-10 69.0 20.1 129 15-143 21-151 (359)
21 TIGR00814 stp serine transport 98.5 9E-05 1.9E-09 67.0 22.5 217 6-240 13-246 (397)
22 PRK00701 manganese transport p 98.2 0.00037 8.1E-09 63.8 20.8 124 6-130 44-169 (439)
23 PF01566 Nramp: Natural resist 98.2 0.00032 7E-09 62.5 20.0 110 19-130 5-117 (358)
24 PF03222 Trp_Tyr_perm: Tryptop 98.1 0.0014 3.1E-08 59.2 22.5 204 14-238 20-235 (394)
25 TIGR00837 araaP aromatic amino 98.1 0.0027 5.8E-08 56.9 22.6 136 7-144 7-151 (381)
26 PRK11017 codB cytosine permeas 97.9 0.0021 4.5E-08 58.3 19.6 135 25-161 37-174 (404)
27 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.0032 6.9E-08 57.1 19.5 116 8-127 29-147 (416)
28 TIGR00835 agcS amino acid carr 97.8 0.0033 7.2E-08 57.1 19.1 139 4-144 55-203 (425)
29 TIGR01773 GABAperm gamma-amino 97.8 0.011 2.3E-07 54.3 23.0 98 7-104 25-123 (452)
30 COG3949 Uncharacterized membra 97.8 0.0015 3.3E-08 56.7 15.9 93 41-133 50-142 (349)
31 TIGR01197 nramp NRAMP (natural 97.8 0.0092 2E-07 53.9 21.6 122 7-129 15-138 (390)
32 PRK15132 tyrosine transporter 97.8 0.019 4.1E-07 52.1 23.2 209 7-240 14-234 (403)
33 COG1457 CodB Purine-cytosine p 97.7 0.0034 7.3E-08 57.2 17.0 100 58-158 80-181 (442)
34 PRK10483 tryptophan permease; 97.7 0.017 3.7E-07 52.4 21.3 211 14-240 28-245 (414)
35 PRK10197 gamma-aminobutyrate t 97.6 0.038 8.3E-07 50.7 23.2 138 6-144 4-143 (446)
36 COG0814 SdaC Amino acid permea 97.5 0.026 5.7E-07 51.4 20.5 216 15-246 27-253 (415)
37 PRK10249 phenylalanine transpo 97.5 0.055 1.2E-06 49.9 22.7 135 7-142 34-170 (458)
38 TIGR00800 ncs1 NCS1 nucleoside 97.5 0.03 6.4E-07 51.4 20.6 207 24-244 41-264 (442)
39 PRK11375 allantoin permease; P 97.5 0.032 6.9E-07 51.9 20.5 199 24-234 54-274 (484)
40 PRK10238 aromatic amino acid t 97.5 0.07 1.5E-06 49.1 22.7 137 8-145 26-164 (456)
41 TIGR03810 arg_ornith_anti argi 97.5 0.043 9.3E-07 50.7 21.3 140 8-147 15-163 (468)
42 PF01235 Na_Ala_symp: Sodium:a 97.4 0.0058 1.3E-07 55.4 14.7 144 4-148 27-180 (416)
43 PRK09664 tryptophan permease T 97.4 0.084 1.8E-06 48.0 22.1 209 14-237 26-243 (415)
44 TIGR00909 2A0306 amino acid tr 97.4 0.031 6.7E-07 50.8 18.9 105 42-146 51-172 (429)
45 PRK11049 D-alanine/D-serine/gl 97.4 0.11 2.4E-06 48.0 22.6 140 7-147 33-174 (469)
46 TIGR00905 2A0302 transporter, 97.3 0.065 1.4E-06 49.6 20.6 137 8-146 21-168 (473)
47 PRK11021 putative transporter; 97.3 0.075 1.6E-06 48.1 20.5 100 7-106 12-112 (410)
48 TIGR00913 2A0310 amino acid pe 97.2 0.1 2.3E-06 48.2 20.7 132 9-141 17-152 (478)
49 PRK10746 putative transport pr 97.2 0.2 4.4E-06 46.2 23.5 134 7-142 23-159 (461)
50 TIGR00908 2A0305 ethanolamine 97.1 0.14 3.1E-06 46.8 20.7 97 43-139 56-153 (442)
51 PRK10580 proY putative proline 97.1 0.22 4.8E-06 45.8 23.5 137 8-145 23-161 (457)
52 TIGR02358 thia_cytX probable h 97.1 0.11 2.4E-06 46.8 19.2 98 57-155 58-160 (386)
53 PRK11387 S-methylmethionine tr 97.0 0.16 3.4E-06 47.0 20.0 134 8-142 28-164 (471)
54 PRK10836 lysine transporter; P 97.0 0.28 6.1E-06 45.6 22.3 137 7-144 28-167 (489)
55 COG1115 AlsT Na+/alanine sympo 97.0 0.02 4.4E-07 51.9 13.2 142 4-146 71-222 (452)
56 PRK15049 L-asparagine permease 97.0 0.31 6.7E-06 45.5 22.3 136 7-143 41-180 (499)
57 PRK10644 arginine:agmatin anti 96.9 0.33 7.1E-06 44.5 21.7 135 7-142 21-160 (445)
58 PRK10655 potE putrescine trans 96.9 0.33 7.1E-06 44.3 21.4 126 19-144 30-160 (438)
59 COG1113 AnsP Gamma-aminobutyra 96.9 0.34 7.3E-06 44.3 20.4 136 7-144 26-164 (462)
60 PRK13629 threonine/serine tran 96.9 0.36 7.9E-06 44.2 22.7 175 55-240 80-272 (443)
61 COG1953 FUI1 Cytosine/uracil/t 96.6 0.3 6.5E-06 45.1 18.0 197 22-232 66-285 (497)
62 PF13520 AA_permease_2: Amino 96.5 0.63 1.4E-05 42.1 22.0 202 24-240 27-239 (426)
63 PTZ00206 amino acid transporte 96.5 0.31 6.7E-06 45.2 17.3 127 12-139 75-215 (467)
64 PRK10435 cadB lysine/cadaverin 96.5 0.69 1.5E-05 42.3 21.1 93 8-103 19-113 (435)
65 PF02133 Transp_cyt_pur: Perme 96.3 0.33 7.1E-06 44.4 16.7 203 23-244 35-258 (440)
66 PRK11357 frlA putative fructos 96.0 1.2 2.5E-05 40.9 19.7 100 40-140 56-157 (445)
67 TIGR00906 2A0303 cationic amin 95.9 1.6 3.5E-05 41.4 19.7 124 25-148 60-202 (557)
68 PRK09950 putative transporter; 95.5 1.8 3.8E-05 40.6 17.6 148 88-243 206-366 (506)
69 TIGR00796 livcs branched-chain 95.2 2 4.3E-05 38.7 16.3 129 4-139 3-140 (378)
70 TIGR00911 2A0308 L-type amino 95.1 2.9 6.4E-05 38.9 21.3 108 39-146 89-204 (501)
71 COG0531 PotE Amino acid transp 93.9 4.9 0.00011 36.6 19.8 107 44-150 62-177 (466)
72 PF02028 BCCT: BCCT family tra 93.9 5.5 0.00012 37.2 19.6 195 41-242 144-356 (485)
73 PLN03074 auxin influx permease 93.0 7.3 0.00016 36.2 15.9 80 58-137 121-201 (473)
74 TIGR00842 bcct choline/carniti 92.7 8.1 0.00018 35.7 17.0 146 90-242 161-319 (453)
75 KOG1303|consensus 92.7 7.3 0.00016 35.8 15.2 174 56-246 104-286 (437)
76 PRK03356 L-carnitine/gamma-but 92.2 10 0.00022 35.5 17.4 144 91-242 212-368 (504)
77 PRK09928 choline transport pro 91.9 13 0.00028 36.1 16.4 152 82-242 210-373 (679)
78 PF00324 AA_permease: Amino ac 91.9 0.53 1.2E-05 43.5 7.0 141 7-148 8-158 (478)
79 PF02554 CstA: Carbon starvati 91.8 9.2 0.0002 34.3 15.9 48 52-99 109-156 (376)
80 TIGR03428 ureacarb_perm permea 91.3 12 0.00026 34.6 22.8 86 14-99 33-120 (475)
81 PRK15238 inner membrane transp 90.7 14 0.00031 34.3 20.4 64 23-86 33-99 (496)
82 KOG1304|consensus 90.1 9.3 0.0002 35.2 12.9 162 64-246 131-302 (449)
83 TIGR00930 2a30 K-Cl cotranspor 89.7 25 0.00055 35.8 21.2 88 58-145 144-241 (953)
84 TIGR03813 put_Glu_GABA_T putat 89.6 17 0.00036 33.6 20.4 85 14-99 18-104 (474)
85 COG0833 LysP Amino acid transp 87.9 24 0.00052 33.2 15.9 150 7-158 57-212 (541)
86 TIGR00910 2A0307_GadC glutamat 85.8 31 0.00067 32.3 18.5 67 14-81 21-90 (507)
87 COG0733 Na+-dependent transpor 85.2 31 0.00066 31.8 19.1 222 6-238 19-265 (439)
88 TIGR00907 2A0304 amino acid pe 79.4 52 0.0011 30.3 16.2 63 39-101 59-126 (482)
89 PF05525 Branch_AA_trans: Bran 78.8 30 0.00065 31.8 10.7 131 3-139 10-147 (427)
90 COG0591 PutP Na+/proline sympo 78.4 59 0.0013 30.4 13.0 52 195-246 246-297 (493)
91 PRK15433 branched-chain amino 76.8 63 0.0014 29.8 12.4 66 58-123 266-331 (439)
92 PF01490 Aa_trans: Transmembra 75.6 0.054 1.2E-06 48.7 -7.9 130 12-141 18-159 (409)
93 COG1966 CstA Carbon starvation 69.7 99 0.0021 29.4 11.7 89 11-100 67-157 (575)
94 COG1292 BetT Choline-glycine b 66.9 1.2E+02 0.0025 28.8 19.0 149 72-229 196-356 (537)
95 KOG1287|consensus 65.1 1.2E+02 0.0026 28.3 12.0 94 48-144 71-169 (479)
96 PRK15015 carbon starvation pro 63.3 1.5E+02 0.0033 28.9 12.3 46 53-98 141-186 (701)
97 PF05525 Branch_AA_trans: Bran 61.6 1.3E+02 0.0029 27.6 12.6 72 58-130 262-334 (427)
98 KOG1286|consensus 59.4 1.7E+02 0.0036 28.0 13.9 97 6-102 42-141 (554)
99 PF03600 CitMHS: Citrate trans 57.7 1.3E+02 0.0029 26.3 10.8 66 101-167 219-290 (351)
100 TIGR00796 livcs branched-chain 54.7 1.6E+02 0.0036 26.5 12.4 76 55-131 253-329 (378)
101 COG1114 BrnQ Branched-chain am 50.0 2.1E+02 0.0045 26.3 11.1 129 5-139 14-149 (431)
102 TIGR01197 nramp NRAMP (natural 46.1 2.3E+02 0.005 25.7 11.5 50 56-105 279-328 (390)
103 KOG1291|consensus 43.9 2.8E+02 0.006 26.0 13.8 102 9-115 42-147 (503)
104 PRK15433 branched-chain amino 36.8 3.5E+02 0.0075 25.1 11.6 130 3-139 15-151 (439)
105 KOG1289|consensus 28.7 5.2E+02 0.011 24.7 14.8 46 56-101 117-162 (550)
106 PRK00701 manganese transport p 24.3 5.6E+02 0.012 23.6 14.0 91 55-145 292-392 (439)
107 PF11654 DUF2665: Protein of u 23.7 1.6E+02 0.0034 18.1 3.4 21 49-69 25-45 (47)
108 PF06322 Phage_NinH: Phage Nin 22.8 70 0.0015 20.8 1.8 16 54-69 3-18 (64)
109 PF06422 PDR_CDR: CDR ABC tran 22.0 2E+02 0.0043 20.6 4.4 36 55-90 29-71 (103)
110 PRK10472 low affinity gluconat 21.8 1.7E+02 0.0038 27.0 4.9 46 40-85 68-115 (445)
111 PRK09877 2,3-diketo-L-gulonate 21.8 3.7E+02 0.0081 20.6 9.0 33 49-81 54-90 (157)
112 PF03609 EII-Sor: PTS system s 20.9 2.6E+02 0.0057 23.4 5.4 39 205-243 121-160 (238)
113 PF14150 YesK: YesK-like prote 20.7 1.4E+02 0.0031 20.6 3.1 17 60-76 16-33 (81)
114 PF00939 Na_sulph_symp: Sodium 20.7 6.7E+02 0.014 23.1 9.8 31 58-88 249-284 (471)
No 1
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=100.00 E-value=1.9e-40 Score=299.53 Aligned_cols=245 Identities=24% Similarity=0.476 Sum_probs=207.7
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhCh-hHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSR-NLQLLASTMFT 80 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~-~~~~~~a~~~~ 80 (249)
+.|+.||++|+++++|.||.+|++|++++|+.+++.++.++.+.++.|++||.|..|++|++++|||+ ..|.+.++..+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~~~i 90 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRILRGLSVLSLI 90 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999995 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Q psy8232 81 VQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSV 160 (249)
Q Consensus 81 l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~ 160 (249)
+..++|++.|+++.+.+++.++|+|++.++++.++++++|+..||+|+++|||.+|+++|+++.+++.+.++.+.||+++
T Consensus 91 ~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~ 170 (407)
T TIGR00813 91 LYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGT 170 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888999999
Q ss_pred HHHHhhhcCc-----cccccCCCCCCCcchhHHH-HHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHH
Q psy8232 161 VWQRNAAYNR-----TTLLSWNPDPTERYSIWSA-LFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNI 234 (249)
Q Consensus 161 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~ 234 (249)
+.+++++.++ .+.++...++......|.. .++........+ .+|+++||++++||+|++||+..++.++..++
T Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~qR~~a~ks~~~~r~~~~~~~~~~~~~ 249 (407)
T TIGR00813 171 FVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYW-TNQVIVQRCLAAKSAKHAKKGCLISGVLKLLP 249 (407)
T ss_pred HHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHh-cCHHHhhHHHhcCCHHHHHHhHHHHHHHHHHH
Confidence 9998877543 1112221222211223321 122111112223 68999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhc
Q psy8232 235 DVIHVMIKYVVTT 247 (249)
Q Consensus 235 ~~~~~~iG~~~~~ 247 (249)
.+++.++|+.+..
T Consensus 250 ~~~~~l~G~~a~~ 262 (407)
T TIGR00813 250 MFGAVLPGLIARA 262 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 2
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=100.00 E-value=1.8e-40 Score=299.42 Aligned_cols=242 Identities=22% Similarity=0.329 Sum_probs=186.0
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhH--HHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNL--QLLASTMF 79 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~--~~~~a~~~ 79 (249)
+.|+.|+++|+++++|.||.+|++|+++.|+.+++.++.++.+++++||+||.|..|+||++|+|||++. |.+.++..
T Consensus 14 ~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~ 93 (406)
T PF00474_consen 14 AFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIII 93 (406)
T ss_dssp HHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhccccc
Confidence 5688999999999999999999999999999999999998888899999999999999999999999666 88888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH
Q psy8232 80 TVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFS 159 (249)
Q Consensus 80 ~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~ 159 (249)
++..++|++.|+++.+.+++.++|+|++.++++.+.++++|+..||+|++++||.+|+++++++.+++.+.++.+.||++
T Consensus 94 i~~~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~ 173 (406)
T PF00474_consen 94 IVFMIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFG 173 (406)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred chhhhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHhhhccchhcCCch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCcccccc-CCCCCCCcc-hhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHH
Q psy8232 160 VVWQRNAAYNRTTLLS-WNPDPTERY-SIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVI 237 (249)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~ 237 (249)
++.+++.+.++.. .+ ++++..+.. +++.. ...++........+||.+||++++||+|++||+...+..+..++..+
T Consensus 174 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~p~~~qR~~aak~~~~ar~~~~~~~~~~~~~~~~ 251 (406)
T PF00474_consen 174 GLFQNLSAAHPNF-LDLFNPGGFSMFSSPLFF-LSFWIALMLGTFGAPHFWQRFLAAKSPKTARKGMLIAIIFLIIFYFL 251 (406)
T ss_dssp HHHHHHHHH-GGG-G-SS--SS-----SSGGG-GS-TTHHHHSTHHH-HHHHHHHSSSHHHHHHHHHHHHHGGGTTHHHH
T ss_pred hhHHHHhhcCccc-ccccCCCCcccccchhhh-HHHHHHHHhhhccchHHHHHHHhcCCHHHHHHHHhHHhhhheeeehH
Confidence 9998887664421 11 112221000 11110 01101111112224999999999999999999999998888888777
Q ss_pred HHhhhhhh
Q psy8232 238 HVMIKYVV 245 (249)
Q Consensus 238 ~~~iG~~~ 245 (249)
..++|+.+
T Consensus 252 ~~~~gl~~ 259 (406)
T PF00474_consen 252 TIFIGLIA 259 (406)
T ss_dssp HHHHHHHH
T ss_pred Hhhhhhhh
Confidence 67777654
No 3
>PRK09395 actP acetate permease; Provisional
Probab=100.00 E-value=8.9e-39 Score=298.11 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=200.7
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhC-hhHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFS-RNLQLLASTMFT 80 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg-~~~~~~~a~~~~ 80 (249)
..|+.||++|+.+++|.||.+|++|++++|+.++..++.++..++++||+||.|..|+||++++||| |..|.+.++..+
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~i 156 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGSL 156 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHH
Confidence 3578999999999999999999999999999999999988888888999999999999999999999 779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccC-CHH
Q psy8232 81 VQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIG-GFS 159 (249)
Q Consensus 81 l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g-g~~ 159 (249)
+..++|+..|+.+.+.+++.++|+|++.++++.++++++||..||+|+++|||.+|+++++++.+++.+.++.+.| |++
T Consensus 157 v~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~~~~~~~ggg~~ 236 (551)
T PRK09395 157 VVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAFMVMKHVGFSFE 236 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888777777776 799
Q ss_pred HHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHH-HHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHH
Q psy8232 160 VVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAF-LHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIH 238 (249)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~ 238 (249)
++.+++.+.++.....+.++.... ..+.. ++..+ ..++.. .+||.+||++++||+|++||+..++..+..++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~g~~-~~p~~~qR~~aaks~k~ar~~~~~~~~~~~~~~~~~ 313 (551)
T PRK09395 237 NLFSEAVAVHPKGLAIMGPGGLVK-DPISA-LSLGLALMFGTA-GLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILT 313 (551)
T ss_pred HHHHHHHhhCcccccccCCCcccc-chHHH-HHHHHHHHHHhh-cccHHHHhhhccCChHHHHHhHHHHHHHHHHHHHHH
Confidence 988887655432111111111101 11111 11111 223333 368999999999999999999999887777777888
Q ss_pred Hhhhhhhh
Q psy8232 239 VMIKYVVT 246 (249)
Q Consensus 239 ~~iG~~~~ 246 (249)
.++|+.+.
T Consensus 314 ~~iG~~a~ 321 (551)
T PRK09395 314 FIIGFGAI 321 (551)
T ss_pred HHHHHHHH
Confidence 88887654
No 4
>PRK12488 acetate permease; Provisional
Probab=100.00 E-value=1.1e-38 Score=297.03 Aligned_cols=243 Identities=14% Similarity=0.169 Sum_probs=201.4
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhC-hhHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFS-RNLQLLASTMFT 80 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg-~~~~~~~a~~~~ 80 (249)
+.|+.||++|+.+++|.||.+|.+|++++|+.++..++.++..++++||+||.+..|+||++|+||| |..|.+.++..+
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~i 154 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGTL 154 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHHH
Confidence 4688999999999999999999999999999999999988888889999999999999999999999 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccC-CHH
Q psy8232 81 VQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIG-GFS 159 (249)
Q Consensus 81 l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g-g~~ 159 (249)
+..++|+..|+.+.+.+++.++|+|++.++++.++++++|+.+||||+++|||.+|+++++++.+++.+.++.+.| |++
T Consensus 155 ~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~~~i~~~~~~l~~~g~g~~ 234 (549)
T PRK12488 155 TVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLLSGTSFMAFMVLKHFGFSTE 234 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888777888887 788
Q ss_pred HHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHH-HHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHH
Q psy8232 160 VVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFL-HIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIH 238 (249)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~ 238 (249)
++.++.++.++.......|+.... +.+. .++..+. .++.. ..||.+||++++||+|++||+..++..+..++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~~~~~-~~~~-~~~~~l~~~lg~~-~~p~~~qR~~aaks~k~ar~s~~~~~~~~~~~~~~~ 311 (549)
T PRK12488 235 AMFASAVAVHAKGQAILAPGGLLS-NPID-AISLGLGMMFGTA-GLPHILMRFFTVSDAREARKSVLYATGFIGYFYLLI 311 (549)
T ss_pred HHHHHHHhccccchhhcCCccccc-CHHH-HHHHHHHHHHHhc-cCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776544321100111221111 1111 1121121 23333 368999999999999999999999987777777888
Q ss_pred Hhhhhhhhc
Q psy8232 239 VMIKYVVTT 247 (249)
Q Consensus 239 ~~iG~~~~~ 247 (249)
.++|+.+..
T Consensus 312 ~~~G~~a~~ 320 (549)
T PRK12488 312 IVVGFGAIV 320 (549)
T ss_pred HHHHHHHHH
Confidence 888987754
No 5
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=100.00 E-value=1.9e-37 Score=285.60 Aligned_cols=237 Identities=20% Similarity=0.255 Sum_probs=196.0
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccc-----cCCccCHHHHHHhhhC---hhHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQ-----KNNFTSAYQYFGERFS---RNLQL 73 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~r-----r~~~~T~~e~l~~Ryg---~~~~~ 73 (249)
+.|+.||++|+++++|.||.+|++|+.+.|+.++..++.++.+++++||+| |+|..|+||++|+||| |..|.
T Consensus 44 ~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~ 123 (487)
T TIGR02121 44 ALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRI 123 (487)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHH
Confidence 468889999999999999999999999989888888888777788899998 6789999999999999 45777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8232 74 LASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTL 153 (249)
Q Consensus 74 ~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~ 153 (249)
+.+++..+..++|++.|+++.+.+++.++|+|++.++++..+++++|+.+||+|+++|||.+|+++++++.+++.+..+.
T Consensus 124 ~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~ 203 (487)
T TIGR02121 124 ISALIILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALF 203 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred ccCCHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHH
Q psy8232 154 DIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDN 233 (249)
Q Consensus 154 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~ 233 (249)
+.||++++.+++.+.++ +..+..+ +.+++ .+++.....++..+ +||++||++++||+|++||+..++.....+
T Consensus 204 ~~GG~~~~~~~l~~~~~-~~~~~~~----~~~~~-~~~~~~~~~~g~~~-~p~~~qR~~aaks~k~~~~~~~~~~~~~~~ 276 (487)
T TIGR02121 204 NLGGFGETLSAVAAINP-HLLDMFK----GASVI-AIISLLAWGLGYFG-QPHIIVRFMAIRSHKELPKARRIGMSWMIL 276 (487)
T ss_pred HcCCHHHHHHHHHhhCc-cccCCCC----CCCHH-HHHHHHHHHHHhcc-chHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 88999999988765543 2223211 11222 23333222344443 699999999999999999999998776655
Q ss_pred HHHHHHhhhhhh
Q psy8232 234 IDVIHVMIKYVV 245 (249)
Q Consensus 234 ~~~~~~~iG~~~ 245 (249)
..+...++|+.+
T Consensus 277 ~~~~~~~~g~~g 288 (487)
T TIGR02121 277 SLLGAIAVGLTG 288 (487)
T ss_pred HHHHHHHHHHHH
Confidence 555556666554
No 6
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=100.00 E-value=7.8e-38 Score=291.42 Aligned_cols=242 Identities=18% Similarity=0.268 Sum_probs=200.7
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhC-hhHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFS-RNLQLLASTMFT 80 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg-~~~~~~~a~~~~ 80 (249)
..|+.|+++|+.+++|.||.+|.+|++++|+.++..++.++..++++||+||.|..|+||++++||+ |..|.+.++.++
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~i 154 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGSL 154 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHHH
Confidence 3578899999999999999999999999999999999988888889999999999999999999998 889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccC-CHH
Q psy8232 81 VQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIG-GFS 159 (249)
Q Consensus 81 l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g-g~~ 159 (249)
+..++|+..|+++.+.+++.++|+|++.++++.+.++++|+.+||||+++|||.+|+++++++.+++.+.+..+.| |++
T Consensus 155 ~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~g~i~~~~~~~~~~ggg~~ 234 (549)
T TIGR02711 155 VVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAVLLLFGATFMAFMVMKSVGFSFN 234 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887777777776 788
Q ss_pred HHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHH-HHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHH
Q psy8232 160 VVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAF-LHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIH 238 (249)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~ 238 (249)
++.++..+.++.......++.... ..+.. ++..+ ..++.. ..||.+||++++||+|++||+..++..+..++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~lg~~-g~P~~~~R~~taks~k~ar~s~~~~~~~~~~~~~~~ 311 (549)
T TIGR02711 235 TLFKEAMAVHPKGVAIMSPGGLVS-DPISA-LSLGLGLMFGTA-GLPHILMRFFTVSDAKEARKSVFYATGFMGYFYILT 311 (549)
T ss_pred HHHHHHHhhCcccccccCCCcccc-chHHH-HHHHHHHHHHhc-CCchhheeeeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766544322111111211111 11211 22222 223333 369999999999999999999999988888888888
Q ss_pred Hhhhhhhh
Q psy8232 239 VMIKYVVT 246 (249)
Q Consensus 239 ~~iG~~~~ 246 (249)
.++|+.+.
T Consensus 312 ~~~G~~a~ 319 (549)
T TIGR02711 312 FIIGFGAI 319 (549)
T ss_pred HHHHHHHH
Confidence 88887654
No 7
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=100.00 E-value=8.9e-37 Score=281.03 Aligned_cols=241 Identities=19% Similarity=0.172 Sum_probs=192.3
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhccc----ccCCccCHHHHHHhhhC-hhHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFF----QKNNFTSAYQYFGERFS-RNLQLLAS 76 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~----rr~~~~T~~e~l~~Ryg-~~~~~~~a 76 (249)
..|+.||++|+++++|.||.+|++|+++.|..........+...+++|++ ||.|..|+||++|+||| |..+.+.+
T Consensus 49 ~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~ 128 (483)
T PRK09442 49 AMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLAS 128 (483)
T ss_pred HHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHH
Confidence 46889999999999999999999999876554433222222333456665 89999999999999999 56788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy8232 77 TMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIG 156 (249)
Q Consensus 77 ~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g 156 (249)
+..++..+++++.|+.+.+.+++.++|+|++.++++.++++++|+.+||+|+++|||.+|+++++++.+++.+....+.|
T Consensus 129 i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~g 208 (483)
T PRK09442 129 LSLLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGG 208 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999888887888889
Q ss_pred CHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHH-HHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHH
Q psy8232 157 GFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAF-LHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNID 235 (249)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~ 235 (249)
|++++.++++++++ +.++.. ++.+..+ +....+.++ ..++..+ .||.+||++++||+|++||+..+++.+..++.
T Consensus 209 G~~~~~~~l~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~~~~~g~~~-~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~ 284 (483)
T PRK09442 209 GLENAVQTLQAIDP-QLVTPQ-GADDILS-PPFMTSFWILVCFGVIG-LPHTAVRCMSYKDSKALHRGIIIGTIVVGFLM 284 (483)
T ss_pred CHHHHHHHHHhcCc-cccCCC-CCCcccc-HHHHHHHHHHHHHHHhC-CCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999876543 233221 1111111 222222222 2333333 58899999999999999999999999999999
Q ss_pred HHHHhhhhhhh
Q psy8232 236 VIHVMIKYVVT 246 (249)
Q Consensus 236 ~~~~~iG~~~~ 246 (249)
+++.++|+.+.
T Consensus 285 ~~~~~~G~~~~ 295 (483)
T PRK09442 285 FGMHLAGALGR 295 (483)
T ss_pred HHHHHHHHHHH
Confidence 99999997653
No 8
>PRK10484 putative transporter; Provisional
Probab=100.00 E-value=1e-36 Score=282.96 Aligned_cols=245 Identities=20% Similarity=0.329 Sum_probs=188.7
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTV 81 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l 81 (249)
+.|+.||++|+++++|.||.+|++|++..++.++..++.++.+++++||+||.|..|+||++|+|||++.|.+.+.+.++
T Consensus 46 ~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i 125 (523)
T PRK10484 46 AGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLI 125 (523)
T ss_pred HHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHH
Confidence 46899999999999999999999999987667777778777888899999999999999999999997777777776655
Q ss_pred -HHHHHHHHHHHHHHHHHHH------HhCCchHHHHHH----HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 82 -QMVLYLALVLYAPAMALHQ------VTGLNTMMVVSV----MFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCK 150 (249)
Q Consensus 82 -~~~~~~~~q~~~~~~~l~~------~~gi~~~~~~~i----~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~ 150 (249)
....+++.++++.+..++. ++|+|+..+..+ .++++++||..||+|+++|||.+|+++++++.+++.+.
T Consensus 126 ~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ~vim~i~~iiv~~~ 205 (523)
T PRK10484 126 GYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTINGIGLLIGGLLVPVF 205 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888877765 468998877654 35677999999999999999999999999988777766
Q ss_pred hhhccC--CHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHh
Q psy8232 151 GTLDIG--GFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQM 228 (249)
Q Consensus 151 ~~~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~ 228 (249)
++.+.| +..+..+++.++++ +.++..++..+...++..+.+..+.++..++.+||++||++++||+|++||+..+++
T Consensus 206 ~l~~~g~g~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak~~k~a~~~~~~~~ 284 (523)
T PRK10484 206 GLIALGDGSFMQGLEQLTTVHP-EKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAKNLAEGQKGALLAA 284 (523)
T ss_pred HHHHhCCccHHhHHHHHhhcCc-hhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666554 34444455444332 222221111111222223334444456666779999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhhhc
Q psy8232 229 IMDDNIDVIHVMIKYVVTT 247 (249)
Q Consensus 229 ~~~~~~~~~~~~iG~~~~~ 247 (249)
.+..++.++..++|+.+..
T Consensus 285 ~~~~~~~~~~~~~G~~a~~ 303 (523)
T PRK10484 285 FFKLLGPLILVLPGIIAFH 303 (523)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9988888888888987754
No 9
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=100.00 E-value=2.6e-36 Score=281.76 Aligned_cols=239 Identities=16% Similarity=0.184 Sum_probs=183.6
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhC-hhHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFS-RNLQLLASTMFT 80 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg-~~~~~~~a~~~~ 80 (249)
+.|+.||++|+.+++|.||.+|.+|+++.|+.+++..+.++.+++++|++||.|..|++||+|+||| |..|.+.++..+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~~~~~~~~i~~~ 119 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYYSNTARLVAVICAI 119 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhCCCceehhHHHHHH
Confidence 4688999999999999999999999999999999988888888999999999999999999999999 678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCH-
Q psy8232 81 VQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDI-GGF- 158 (249)
Q Consensus 81 l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~-gg~- 158 (249)
+..++|++.|+.+.+.+++.++|+|++.++++.++++++||..||+|+++|||.+|+++++++.+++......+. |+.
T Consensus 120 ~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~iim~ig~i~~~~~~~~~~~g~~~ 199 (552)
T TIGR03648 120 FISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYIVLIVAYLVPAIFISLKLTGNPV 199 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998776655544443 332
Q ss_pred -----HHHH------HHhhhcCc-cccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHH
Q psy8232 159 -----SVVW------QRNAAYNR-TTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYD 226 (249)
Q Consensus 159 -----~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~ 226 (249)
++.. +++++.++ ....++. ++....+.+..+.......++.. .+||.+||++++||+|++||+..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~-~~p~~~qR~~aaks~~~a~~~~~~ 277 (552)
T TIGR03648 200 PQLGYGSALSGVYLLDKLDELEVDLGFAEYT-EPFGSKSRINVFALTLALMVGTA-GLPHVIVRFYTVPKVRDARWSAGW 277 (552)
T ss_pred hhhhhHHHHhhhhhhhhhhhcccccchhhhc-cccccCChHHHHHHHHHHHHhcc-cchHHHHHHhcCCCHHHHHHHHHH
Confidence 2222 22222110 1100110 11111112222211122234443 368999999999999999999988
Q ss_pred HhhHHHHHHHHHHhhh
Q psy8232 227 QMIMDDNIDVIHVMIK 242 (249)
Q Consensus 227 ~~~~~~~~~~~~~~iG 242 (249)
+..+..++......+|
T Consensus 278 ~~~~~~~~~~~~~~ig 293 (552)
T TIGR03648 278 ALFFIALLYTTAPAVA 293 (552)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8765555544444444
No 10
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=100.00 E-value=8.6e-36 Score=275.49 Aligned_cols=217 Identities=19% Similarity=0.238 Sum_probs=177.9
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccc-----cCCccCHHHHHHhhhC---hhHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQ-----KNNFTSAYQYFGERFS---RNLQL 73 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~r-----r~~~~T~~e~l~~Ryg---~~~~~ 73 (249)
+.|+.||++|+++++|.||.+|++|+++.|+.++..++.++...++.||+| |.|..|+|||+|+||| |..|.
T Consensus 48 ~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~ 127 (502)
T PRK15419 48 ALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRI 127 (502)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHH
Confidence 468899999999999999999999999989888888887766666777765 5699999999999999 45777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8232 74 LASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTL 153 (249)
Q Consensus 74 ~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~ 153 (249)
+.+++.++..++|++.|+++.+.+++.++|+|++.++++.++++++|+.+||+|+++|||.+|+++|+++.+++.+.++.
T Consensus 128 ~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~imi~g~i~~~~~~~~ 207 (502)
T PRK15419 128 ISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVII 207 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888898999999999999999999999999999999999999999999999999999999999999998888877888
Q ss_pred ccCCHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHH
Q psy8232 154 DIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDY 225 (249)
Q Consensus 154 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~ 225 (249)
+.||++++.+++.+.++ +..+. .++.+++ .+.+.+...++..+ +||++||++++||+|++|++..
T Consensus 208 ~~GG~~~~~~~~~~~~~-~~~~~----~~~~~~~-~~~~~~~~~~g~~~-~p~~~qR~~aak~~~~~~~a~~ 272 (502)
T PRK15419 208 SVGGFGDSLEVIKQKSI-ENVDM----LKGLNFV-AIISLMGWGLGYFG-QPHILARFMAADSHHSIVHARR 272 (502)
T ss_pred HcCCHHHHHHHHHhcCc-cccCc----ccCCCHH-HHHHHHHHHHHHcC-ChHHHHhheecCChHHHHHHHH
Confidence 88999999888765432 22221 1112222 23333222344444 7999999999999997665543
No 11
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=100.00 E-value=5e-35 Score=268.71 Aligned_cols=241 Identities=17% Similarity=0.184 Sum_probs=188.4
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHH-HHHHHHHHH---HHHhhhcccccCCccCHHHHHHhhhC-hhHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFG-VSCFFVIPI---VGYIFVPFFQKNNFTSAYQYFGERFS-RNLQLLAS 76 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~-~g~~~~~~l---~~~~~~~~~rr~~~~T~~e~l~~Ryg-~~~~~~~a 76 (249)
+.|+.||++|+++++|.||.+|++|++..+.. .+...+.+. .+..+.|..||+|..|+||++++||| |..|.+.+
T Consensus 48 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~ 127 (471)
T TIGR02119 48 AMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSS 127 (471)
T ss_pred HHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHH
Confidence 46889999999999999999999999754332 222233322 22233344589999999999999999 66788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy8232 77 TMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIG 156 (249)
Q Consensus 77 ~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g 156 (249)
+..++..++++..|+.+.+.+++.++|+|++.++++.++++++|+..||+|+++|||.+|+++++++.+++.+....+.|
T Consensus 128 i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~g 207 (471)
T TIGR02119 128 ISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGG 207 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98999999999999999999999999999999999999999999999999999999999999999999888888888889
Q ss_pred CHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHH-HHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHH
Q psy8232 157 GFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFL-HIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNID 235 (249)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~ 235 (249)
|+++..++++++++ +.++.. ++.+..+ .....+.++. .++.. ..||.+||.+++||+|++||+..+++++..++.
T Consensus 208 G~~~~~~~l~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~~~~~g~~-~~p~~~~R~~aak~~~~a~~~~~~~~~~~~~~~ 283 (471)
T TIGR02119 208 GVEKIMEKLKDIDP-NLITPF-GGDGGLT-KPFVASFWILVGIGVI-GLPQTAVRCMSYKDSKAMHRAMIIGTIVVGIIM 283 (471)
T ss_pred CHHHHHHHHHhcCc-cccCCC-CCCcchh-hhHHHHHHHHHHHHHh-CchHHHHHHHhcCCHHHHhhhHhHHHHHHHHHH
Confidence 99999998887643 222211 1111011 0011111111 22233 358899999999999999999999999999998
Q ss_pred HHHHhhhhhhh
Q psy8232 236 VIHVMIKYVVT 246 (249)
Q Consensus 236 ~~~~~iG~~~~ 246 (249)
+.+.+.|+.+.
T Consensus 284 ~~~~~~G~~a~ 294 (471)
T TIGR02119 284 LGMHLAGVLGR 294 (471)
T ss_pred HHHHHHHHhhh
Confidence 88888887653
No 12
>KOG2349|consensus
Probab=100.00 E-value=5.5e-36 Score=272.90 Aligned_cols=244 Identities=34% Similarity=0.676 Sum_probs=232.5
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTV 81 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l 81 (249)
++|++||++|+..++|.|++.|++|+..+++.+...+..++.++++.|.++|.|..|.+||+|+||++..|.+.++..++
T Consensus 53 ~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf~~~~r~l~~l~f~l 132 (585)
T KOG2349|consen 53 AASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVTTMYEYLEKRFGGRVRYLATLSFIL 132 (585)
T ss_pred ehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCeeehhHHHHHHhcccchhhHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHH
Q psy8232 82 QMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVV 161 (249)
Q Consensus 82 ~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~ 161 (249)
..+.++..-+++-+..++..+|++.+....+...++.+||..||+|+++|||++|.++|+.+...+.+....+.||.+.+
T Consensus 133 ~~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V 212 (585)
T KOG2349|consen 133 MIFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRV 212 (585)
T ss_pred HHHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccccc-cCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHh
Q psy8232 162 WQRNAAYNRTTLL-SWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVM 240 (249)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~ 240 (249)
.++-.++++.+.. ++++||..++++|..++|..+.++..++.||...||+.+.||.|++|+++.+......+..++.++
T Consensus 213 ~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~ 292 (585)
T KOG2349|consen 213 LEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVF 292 (585)
T ss_pred eeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcc
Confidence 9998888877766 577888888999998899999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q psy8232 241 IKYVV 245 (249)
Q Consensus 241 iG~~~ 245 (249)
.|++-
T Consensus 293 ~G~i~ 297 (585)
T KOG2349|consen 293 VGMII 297 (585)
T ss_pred cceeE
Confidence 99864
No 13
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=2e-33 Score=258.61 Aligned_cols=239 Identities=20% Similarity=0.271 Sum_probs=196.1
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccC----CccCHHHHHHhhhC-hhHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKN----NFTSAYQYFGERFS-RNLQLLAS 76 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~----~~~T~~e~l~~Ryg-~~~~~~~a 76 (249)
+.|..++++|+++++|.||.+|.+|+++.|..++..++..+.+.+++||+||. |..|+||++++||| |..|.+.+
T Consensus 46 ~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~a 125 (493)
T COG0591 46 ALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSA 125 (493)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHH
Confidence 46788999999999999999999999999999998888888889999999875 59999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy8232 77 TMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIG 156 (249)
Q Consensus 77 ~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g 156 (249)
++.++..++|++.|+++.+..++..+|+|+..+..+.+.++++||.+||+|+++|||.+|+.+|++++..+.+.+..+.|
T Consensus 126 li~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~~~ 205 (493)
T COG0591 126 LIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFG 205 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888789
Q ss_pred CHHHHHHHhhhcCccccccCCCCCCCc-chhHHH-HHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHH
Q psy8232 157 GFSVVWQRNAAYNRTTLLSWNPDPTER-YSIWSA-LFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNI 234 (249)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~ 234 (249)
|+++..+...+.++... .++.+. ..++.. ....+..+......+||.+||+++.||+|+.||.....+....+.
T Consensus 206 g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~ 281 (493)
T COG0591 206 GFGELFAVLASLAPLFL----THPFDGALSPIYIISLIAWGTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLY 281 (493)
T ss_pred cHHHHHHHHHhcccccc----cCcccccchHHHHHHHHHHHHHHhhhhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHH
Confidence 99999888766543211 011111 122211 112222223344457999999999998888887777666666666
Q ss_pred HHHH-Hhhhhh
Q psy8232 235 DVIH-VMIKYV 244 (249)
Q Consensus 235 ~~~~-~~iG~~ 244 (249)
++.. ..+|..
T Consensus 282 ~~~~a~~~g~~ 292 (493)
T COG0591 282 CLLGAFLLGLL 292 (493)
T ss_pred HHHHHHHHHHH
Confidence 6655 444443
No 14
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=100.00 E-value=5.7e-32 Score=231.35 Aligned_cols=239 Identities=16% Similarity=0.167 Sum_probs=192.2
Q ss_pred CccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhccc----ccCCccCHHHHHHhhhC-hhHHHHH
Q psy8232 1 MTGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFF----QKNNFTSAYQYFGERFS-RNLQLLA 75 (249)
Q Consensus 1 ~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~----rr~~~~T~~e~l~~Ryg-~~~~~~~ 75 (249)
++.|..||++|+++|+|-||.+|.+|+++.....--.....+...+++|++ ||+|..|++|++++||. +...+++
T Consensus 46 lAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~la 125 (473)
T COG4145 46 LAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLA 125 (473)
T ss_pred hhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHH
Confidence 466889999999999999999999999975443332222333334456665 78999999999999998 8889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8232 76 STMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDI 155 (249)
Q Consensus 76 a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~ 155 (249)
++..++....++..|.++.++.+|+..|+||..+.++.+..+.+||.+||.|++++||.+|+++|+++.+++..-.++..
T Consensus 126 s~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~ 205 (473)
T COG4145 126 SLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAG 205 (473)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred CCHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHH-HHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHH
Q psy8232 156 GGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFL-HIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNI 234 (249)
Q Consensus 156 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~ 234 (249)
||.++..+++.+-++. +...++ ......+ .++.+.|+. +++..+ .||..-|+.+.||+|..++++.++.....+.
T Consensus 206 GG~~~av~tl~~iDp~-lv~P~~-~~~~l~~-~Fm~Sfwilv~~gvlg-lP~t~vr~ia~kDskaih~gmiigt~vi~il 281 (473)
T COG4145 206 GGLSNAVETLTTIDPG-LVTPQG-ADDILDP-PFMASFWILVCFGVLG-LPHTAVRCIAFKDSKAIHRGMIIGTIVIAIL 281 (473)
T ss_pred cCHHHHHHHHHhCCcc-ccCCCC-Ccccccc-hHHHHHHHHHHHHHhc-CcHHHHHHHhccchhHHhcCcchHHHHHHHH
Confidence 9999999999876542 322211 1111111 123344433 455544 5899999999999999999999999888777
Q ss_pred HHHHHhhhh
Q psy8232 235 DVIHVMIKY 243 (249)
Q Consensus 235 ~~~~~~iG~ 243 (249)
.+.--++|.
T Consensus 282 ~~gmhl~G~ 290 (473)
T COG4145 282 MLGMHLAGA 290 (473)
T ss_pred HHHHHHhhh
Confidence 666655554
No 15
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=99.98 E-value=2.9e-31 Score=233.76 Aligned_cols=243 Identities=17% Similarity=0.223 Sum_probs=200.5
Q ss_pred ceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhC-hhHHHHHHHHHHHH
Q psy8232 4 DQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFS-RNLQLLASTMFTVQ 82 (249)
Q Consensus 4 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg-~~~~~~~a~~~~l~ 82 (249)
.+.+.|+|+.+|+|.++..+.+|..+++|.+|+..+.++..+.++|++||+|..|.||++.+||+ ++.|.++++..++.
T Consensus 51 AiagdyMSaASflGiag~I~~~GYdG~~Y~iG~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~v 130 (529)
T COG4147 51 AIAGDYMSAASFLGIAGLIFISGYDGLIYSIGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIV 130 (529)
T ss_pred ehhccccchHhhhchhHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccC-CHHHH
Q psy8232 83 MVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIG-GFSVV 161 (249)
Q Consensus 83 ~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g-g~~~~ 161 (249)
...|+..|+.+.|.+++.++|+|++.++.+...++.+|+.+||||+.+|++++|.++++.+.++.......+.| .+...
T Consensus 131 s~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~ 210 (529)
T COG4147 131 SFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPL 210 (529)
T ss_pred HHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999888777766665 45555
Q ss_pred HHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy8232 162 WQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMI 241 (249)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~i 241 (249)
.+...+.++..-.+...+|......+.-+++..+........-||...|+++.+|.||+||+..|+..+...+.+..-.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~i 290 (529)
T COG4147 211 FAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPII 290 (529)
T ss_pred HHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443332210000111221111223234444444333333459999999999999999999999999999999998888
Q ss_pred hhhhh
Q psy8232 242 KYVVT 246 (249)
Q Consensus 242 G~~~~ 246 (249)
|.-+-
T Consensus 291 g~~A~ 295 (529)
T COG4147 291 GAGAR 295 (529)
T ss_pred HHHHH
Confidence 87653
No 16
>COG4146 Predicted symporter [General function prediction only]
Probab=99.94 E-value=1.5e-26 Score=198.28 Aligned_cols=245 Identities=20% Similarity=0.307 Sum_probs=200.7
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTV 81 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l 81 (249)
++|++-|+.|.-..+|..+.+|..+++-..+.+...+.+.+.++.+.||+-|.|++|+||++|+||+|..|.+.+.+.++
T Consensus 48 ~~SlvLTnLSTEQlvGln~~ayk~~~svmaWeVts~i~L~flAl~~lprylK~GitTIPdFlE~RfD~~TR~Iis~lFLi 127 (571)
T COG4146 48 ACSLVLTNLSTEQLVGLNGQAYKGNMSVMAWEVTSVIPLIFLALYFLPRYLKRGITTIPDFLEERFDKTTRMIISFLFLI 127 (571)
T ss_pred eehhhhhcccHHHhccccceeccCCeEEEEEEecchHHHHHHHHHHHHHHHhcCCccchHHHHHhhhhHHHHHHHHHHHH
Confidence 67889999999999999999999999987777777888888888999999999999999999999999999999998877
Q ss_pred -HHHHHHHHHHHHHHHHHHHHh------CCch----HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 82 -QMVLYLALVLYAPAMALHQVT------GLNT----MMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCK 150 (249)
Q Consensus 82 -~~~~~~~~q~~~~~~~l~~~~------gi~~----~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~ 150 (249)
....++...+++.+..++.++ ++|+ +..++..+++-+.|..+||+|+.+..|.++++...++-+.++++
T Consensus 128 ~y~~~flPtvLYsGAla~nsiF~l~~v~~IS~g~~i~~~viaiG~~g~~Yai~GGLkA~AvsDtiNgigLviGgLlvPif 207 (571)
T COG4146 128 AYGVCFLPTVLYSGALALNSIFHLGEVLQISHGAAIWLLVIAIGLAGILYAIIGGLKAMAVSDTINGIGLVIGGLLVPIF 207 (571)
T ss_pred HHHHHhhhHHHhhhhHHHhhhhchHhhhCcCcchHHHHHHHHHHHHHHHHHHHcchhheeeccccchhhHhhhhHHHHHH
Confidence 567788889999999988775 4554 33345556677899999999999999999999999999999999
Q ss_pred hhhccC--CHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHh
Q psy8232 151 GTLDIG--GFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQM 228 (249)
Q Consensus 151 ~~~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~ 228 (249)
++.+.| .+.+=.+++...+. +.++...++.+..++-..+-+.++.+...||.||...||.+++||.++-+|+.++++
T Consensus 208 aLi~lG~Gsfa~G~~~itt~h~-eKlNaIGg~~d~vPw~a~fTGll~vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa 286 (571)
T COG4146 208 ALIALGKGSFAQGIEQITTVHA-EKLNAIGGPTDPVPWGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAA 286 (571)
T ss_pred HHHhhcCccHhhchhhhhccCH-HHhcccCCCCCCCcHHHHHHhHhhhheeeeeccHHHHHHHHhhhhhhccccccHHHH
Confidence 887775 34333333333322 233333344433443344557777789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhhhc
Q psy8232 229 IMDDNIDVIHVMIKYVVTT 247 (249)
Q Consensus 229 ~~~~~~~~~~~~iG~~~~~ 247 (249)
++.+.-....++.|+.++-
T Consensus 287 ~fk~~~pl~LvLPGliafh 305 (571)
T COG4146 287 VFKMLDPLVLVLPGLIAFH 305 (571)
T ss_pred HHHHhchHHhhhhHHHHHH
Confidence 9999999999999988764
No 17
>KOG3761|consensus
Probab=99.87 E-value=5.4e-23 Score=174.41 Aligned_cols=238 Identities=14% Similarity=0.166 Sum_probs=191.8
Q ss_pred cceeehhhhhhhhhccchhhhhcchh--HHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHH
Q psy8232 3 GDQILNFLSSITFIGQPAEVYKFGPQ--LWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFT 80 (249)
Q Consensus 3 ~s~~at~~s~~t~~g~~g~~y~~G~~--~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~ 80 (249)
+||.|||.++..+-|.++..|.-|.. +-.-++|+.+.+++.+++|++++|+.|+.|+-|-+++.|||+.+-+.-+..+
T Consensus 59 ftmtatwvgg~yingtaealy~~gygl~~~qapigyaislilggl~fak~mr~egyitmldpfq~~ygkriggll~ipal 138 (591)
T KOG3761|consen 59 FTMTATWVGGAYINGTAEALYNGGYGLAGAQAPIGYAISLILGGLFFAKKMREEGYITMLDPFQHIYGKRIGGLLFIPAL 138 (591)
T ss_pred EEEEEEEecceeeccchhhhccCCcccccccCcchhhHHHHhhhhhhcchhhhcCcEEeechHHHHhhhhccceEeeHHH
Confidence 68999999999999999999998654 4467999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Q psy8232 81 VQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSV 160 (249)
Q Consensus 81 l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~ 160 (249)
+....|.++-+.+.+..++.+.+++...++++.+.+..+||..||+.++++||++|..++++++.+....++.+. +..|
T Consensus 139 lge~fwaaai~salgatisvii~idm~~sv~isa~ia~~yt~~gg~yavaytdvvqlfcifvglwi~vp~al~h~-~~~d 217 (591)
T KOG3761|consen 139 LGEMFWAAAIFSALGATISVIIDIDMHASVIISACIATFYTFTGGLYAVAYTDVVQLFCIFVGLWICVPAALSHD-AAAD 217 (591)
T ss_pred HhHHHHHHHHHHHhcCeEEEEEeccccHhHHHHHHHHHHHhhccceEEEeehhHHHHHHHHhhhheechhhhcCc-hhhh
Confidence 888899999999999999999999999999999999999999999999999999999999999998888887655 3444
Q ss_pred HHHHhhhcCccccccCCC---CCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHH
Q psy8232 161 VWQRNAAYNRTTLLSWNP---DPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVI 237 (249)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~ 237 (249)
+-.+.. +.|.+ .+|.. +.++ .+.|.-.+ ++..+ ...-.|.++||++++|+..-++.-..++++-.+++.++
T Consensus 218 i~~~a~-hakyq-k~wig~i~g~~e-~~~wid~~--lll~~-ggipwq~yfqrvlss~sa~~aq~lsfla~~gcilmaip 291 (591)
T KOG3761|consen 218 IGFNAG-HAKYQ-KDWIGEIDGFKE-TSLWIDCF--LLLMF-GGIPWQAYFQRVLSSKSAHGAQTLSFLAAFGCILMAIP 291 (591)
T ss_pred cccccc-ccccc-CCceeccCCchh-hHHHHHHH--HHHHh-cCCcHHHHHHHHHhccccchhHHHHHHHHhchHheeCC
Confidence 322211 11111 12211 1222 23342211 11111 11235789999999999999999999999999999999
Q ss_pred HHhhhhhhhc
Q psy8232 238 HVMIKYVVTT 247 (249)
Q Consensus 238 ~~~iG~~~~~ 247 (249)
+.++|-.+-+
T Consensus 292 ~~ligai~~n 301 (591)
T KOG3761|consen 292 AALIGAIAAN 301 (591)
T ss_pred HHHHhhhhcc
Confidence 9999987643
No 18
>KOG2348|consensus
Probab=99.47 E-value=2.8e-14 Score=125.77 Aligned_cols=237 Identities=14% Similarity=0.142 Sum_probs=176.5
Q ss_pred cceeehhhhhhhhhccchhhhhcchhH-HHHHHHHHHHHHHHHHhhhcccccC--CccCHHHHHHhhhChhHHHHHHHHH
Q psy8232 3 GDQILNFLSSITFIGQPAEVYKFGPQL-WMFGVSCFFVIPIVGYIFVPFFQKN--NFTSAYQYFGERFSRNLQLLASTMF 79 (249)
Q Consensus 3 ~s~~at~~s~~t~~g~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~~~~~rr~--~~~T~~e~l~~Ryg~~~~~~~a~~~ 79 (249)
...+.+|..++|.+-.++.+|++|.++ .||.-|..+-++++.. ++-..||. |.+|.-|..+.|||+..+...-+..
T Consensus 60 saVVSsWtW~sTlLtSa~~ayqyGV~G~~wYasga~vQIl~FtV-lAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~ya 138 (667)
T KOG2348|consen 60 SAVVSSWTWASTLLTSAGKAYQYGVSGSFWYASGATVQILLFTV-LAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYA 138 (667)
T ss_pred hhhhhhhhhhHHHHhhccchhhhcccchhhhhccchhhhHHHHH-HHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhh
Confidence 346788999999999999999999987 5999998888887765 45444443 9999999999999988887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhh---hccC
Q psy8232 80 TVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGT---LDIG 156 (249)
Q Consensus 80 ~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~---~~~g 156 (249)
+...+...+.-+.+.+..++.++|.|.....++.-+=+.+||.+||+|+.-.||-.+.++.++.+++....++ .+.|
T Consensus 139 l~TNIlVtaMLL~gGSavisalTGmn~vAa~FLlPlGVvvYTl~GGlKaTFLtdy~HtvIv~iillvf~f~vYtss~~iG 218 (667)
T KOG2348|consen 139 LATNILVTAMLLLGGSAVISALTGMNTVAACFLLPLGVVVYTLFGGLKATFLTDYTHTVIVYIILLVFLFVVYTSSKHIG 218 (667)
T ss_pred hhhhHHHHHHHHhCchhhhhhhccchhhhhhheeeeeEEEEEecCcchhhhhhhhhhhhHHHHHHHHHHHHhhhcccccC
Confidence 7788999999999999999999999999998888888999999999999999999999998887765555443 4678
Q ss_pred CHHHHHHHhhhcCcccc--ccCCCC-----CCCc-chhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHh
Q psy8232 157 GFSVVWQRNAAYNRTTL--LSWNPD-----PTER-YSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQM 228 (249)
Q Consensus 157 g~~~~~~~~~~~~~~~~--~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~ 228 (249)
.++.+.+.+.|..+.+- -|.+.+ +++. ...|.-+ +-+++....|+.+|||..++| +..+-|+..+++
T Consensus 219 Sp~kvYDllke~~~~~Pv~Gn~qGsYlTm~s~~~~i~~iinl----iGnFgTVFvDngYw~kAIaA~-PasalkgY~lGG 293 (667)
T KOG2348|consen 219 SPGKVYDLLKEASKTHPVDGNYQGSYLTMTSRDAAIFGIINL----IGNFGTVFVDNGYWQKAIAAK-PASALKGYFLGG 293 (667)
T ss_pred CcHHHHHHHHHHHhcCCCCCcccceEEEEEccCceEEEEEEe----ccCceeEEEcCchhHHHhccC-chhhccchhhcc
Confidence 89988888876543210 011111 0000 0001001 123445557999999999997 556777788887
Q ss_pred hHHHHHHHH-HHhhhhhh
Q psy8232 229 IMDDNIDVI-HVMIKYVV 245 (249)
Q Consensus 229 ~~~~~~~~~-~~~iG~~~ 245 (249)
+-++.+... ..-.|+++
T Consensus 294 LaWfaVP~~~attmgL~~ 311 (667)
T KOG2348|consen 294 LAWFAVPWLMATTMGLSC 311 (667)
T ss_pred hHHHhHHHHHHHHhhhhh
Confidence 766655443 33344443
No 19
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.61 E-value=1.3e-05 Score=70.23 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=93.4
Q ss_pred hhccchh-hhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 15 FIGQPAE-VYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYA 93 (249)
Q Consensus 15 ~~g~~g~-~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~ 93 (249)
++-.|+. +.+.| ++|...+-..+...+..+...+..||++..|+.|+.++++||..+.+..+...+..+...+..+..
T Consensus 20 ~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~ 98 (320)
T PF03845_consen 20 ILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLRE 98 (320)
T ss_pred HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443 44444 555444444444444456667888999999999999999999999999999999889999999999
Q ss_pred HHHHHHHH-hCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy8232 94 PAMALHQV-TGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYF 142 (249)
Q Consensus 94 ~~~~l~~~-~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~ 142 (249)
.+..++.. ++-.+.+.......++..|...+|++..+.+..+=..+..+
T Consensus 99 ~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 99 FSEFIKTYLLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 99988875 56555666777778999999999999999844333333333
No 20
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.50 E-value=3e-05 Score=68.98 Aligned_cols=129 Identities=13% Similarity=0.219 Sum_probs=91.2
Q ss_pred hhccchhhhhcc-hhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 15 FIGQPAEVYKFG-PQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYA 93 (249)
Q Consensus 15 ~~g~~g~~y~~G-~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~ 93 (249)
++..|+...+.+ -++|...+...+...+.++.+.+..+|++..+..|+.++.+||..+.+.++...+..+...+.....
T Consensus 21 il~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~ 100 (359)
T TIGR00912 21 LLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRI 100 (359)
T ss_pred HHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666787766643 4444333333333444556677888888777999999999999999998888887777777777777
Q ss_pred HHHHHHHHh-CCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Q psy8232 94 PAMALHQVT-GLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFA 143 (249)
Q Consensus 94 ~~~~l~~~~-gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~ 143 (249)
.+..++... +-.+.+...+...++..|....|.+....+..+=..+.+..
T Consensus 101 ~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 101 FADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 777776543 33344455566677788999999999998877666555444
No 21
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.47 E-value=9e-05 Score=66.99 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=121.8
Q ss_pred eehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhc----c--cccCCccCHHHHHHhhhChhHHHHHHHHH
Q psy8232 6 ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVP----F--FQKNNFTSAYQYFGERFSRNLQLLASTMF 79 (249)
Q Consensus 6 ~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~----~--~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~ 79 (249)
.++.+|++ ++..|..+.+.|+-. ..++..++.++. +...+ . .+|+...+..|+.++.+||..+.+.++..
T Consensus 13 ~gt~IGaG-iL~LP~~ag~~G~i~--~li~~l~~~pl~-~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY 88 (397)
T TIGR00814 13 YGTAIGAG-VLFLPIQAGLGGLWV--LVLMAIIAYPLT-YFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLY 88 (397)
T ss_pred HHHHHHHH-HHHHHHHHHhCHHHH--HHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHH
Confidence 34444443 466677654444322 222223333322 22333 2 23445789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----C--CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8232 80 TVQMVLYLALVLYAPAMALHQVT----G--LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTL 153 (249)
Q Consensus 80 ~l~~~~~~~~q~~~~~~~l~~~~----g--i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~ 153 (249)
.+...+...+...+.++.++... + .|+.....+..+++..|....|.|.+...+.+=...+++.+.++......
T Consensus 89 ~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip 168 (397)
T TIGR00814 89 FFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIP 168 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99989998888888888876654 2 33443444555566689999999998877766655555444444443333
Q ss_pred ccCCHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHH---HhcCC--HHHHHHHHHHHh
Q psy8232 154 DIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRY---LTVDS--AAKARQIDYDQM 228 (249)
Q Consensus 154 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~---~aak~--~k~ar~~~~~~~ 228 (249)
+. .++++.+ .+. +.....+.|.. +...+..+.....=|++.+++ +..|| +|++||....+.
T Consensus 169 ~~-~~~~L~~-~p~-----------~~~~~~~i~~a-lpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~ 234 (397)
T TIGR00814 169 HW-NGANLTT-FPS-----------FNGFLKTLWLT-IPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGAS 234 (397)
T ss_pred Hc-CHHHHhc-CCc-----------ccchHHHHHHH-HHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 22 2222211 000 00000122211 111122222222224454333 44234 888999998888
Q ss_pred hHHHHHHHHHHh
Q psy8232 229 IMDDNIDVIHVM 240 (249)
Q Consensus 229 ~~~~~~~~~~~~ 240 (249)
.+...+.++.++
T Consensus 235 ~i~~~~y~~~~~ 246 (397)
T TIGR00814 235 LILVATVMFFVF 246 (397)
T ss_pred HHHHHHHHHHHH
Confidence 877777666554
No 22
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.22 E-value=0.00037 Score=63.81 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=91.4
Q ss_pred eehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 6 ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 6 ~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
.++..+.+++......+.++|++-+|..+-..+...++ .-..-|+-...-.++.|..++||+|....+..+...+..+.
T Consensus 44 a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~-Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~ 122 (439)
T PRK00701 44 AVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLL-QSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMA 122 (439)
T ss_pred hhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHH
Confidence 34667888888888899999999887554333222222 22334444445668999999999999988888888888999
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHh--hccccchhHH
Q psy8232 86 YLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFY--TTIGGMKAVV 130 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Y--t~~GGl~~v~ 130 (249)
+...|..+.+..++.++|+|.++++.+.+.....+ ...+|.|-.-
T Consensus 123 ~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~~y~~~E 169 (439)
T PRK00701 123 TDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPLE 169 (439)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 99999999999999999999988887776544433 2356666443
No 23
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.22 E-value=0.00032 Score=62.51 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=83.2
Q ss_pred chhhhhcchhHHHHHH-HHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 19 PAEVYKFGPQLWMFGV-SCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMA 97 (249)
Q Consensus 19 ~g~~y~~G~~~~~~~~-g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~ 97 (249)
...+.++|++-+|.-+ +..+..+ + .-.+.|+--..-.++.|.+++||||.......+...+..+.+...|+.+.+..
T Consensus 5 ~~aGA~~Gy~Llw~lll~~~~~~~-~-q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~a 82 (358)
T PF01566_consen 5 TQAGAQYGYSLLWVLLLSNLLKYV-F-QEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIA 82 (358)
T ss_pred HHhHHHHCHHHHHHHHHHHHHHHH-H-HHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888776544 3223322 2 22345555456779999999999999999999999999999999999999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHhhc--cccchhHH
Q psy8232 98 LHQVTGLNTMMVVSVMFLVCIFYTT--IGGMKAVV 130 (249)
Q Consensus 98 l~~~~gi~~~~~~~i~~~i~~~Yt~--~GGl~~v~ 130 (249)
++.++|+|......+..+.+..... .|+.|-.-
T Consensus 83 l~ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E 117 (358)
T PF01566_consen 83 LNLLFGIPLWIWVLLVAVIAILLLWLSSGGYRRLE 117 (358)
T ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 9999999999888888777766666 77766443
No 24
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.14 E-value=0.0014 Score=59.17 Aligned_cols=204 Identities=10% Similarity=0.064 Sum_probs=120.7
Q ss_pred hhhccchhhhhcchhHH--HHHHHHHHHHHHHHHhhhccccc-CCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHH
Q psy8232 14 TFIGQPAEVYKFGPQLW--MFGVSCFFVIPIVGYIFVPFFQK-NNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALV 90 (249)
Q Consensus 14 t~~g~~g~~y~~G~~~~--~~~~g~~~~~~l~~~~~~~~~rr-~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q 90 (249)
.+++.|-.+...|+... ...+.+.... ..+..+.+...+ .+..+..|..++.+||+.+.+..+...+.....+.+.
T Consensus 20 GmLaLP~~~~~~Gf~~~~~~l~~~w~~~~-~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AY 98 (394)
T PF03222_consen 20 GMLALPIATAGAGFLPSLILLLIAWPLMY-YSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAY 98 (394)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 46777887777776542 2333333332 344445554433 4688999999999999999999999999899999999
Q ss_pred HHHHHHHHHHHhC------CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHH---hhhccCCHHHH
Q psy8232 91 LYAPAMALHQVTG------LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCK---GTLDIGGFSVV 161 (249)
Q Consensus 91 ~~~~~~~l~~~~g------i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~---~~~~~gg~~~~ 161 (249)
+.+.+.+++..++ .|+..+..+...+......+ |.| ..|.++..+...-+..+... ...+. .++.
T Consensus 99 isg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~---~v~~~n~~lv~~~i~~~~~l~~~~~p~~-~~~~- 172 (394)
T PF03222_consen 99 ISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTK---AVDRINRVLVFGMIISFIILVVYLIPHW-NPSN- 172 (394)
T ss_pred HHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhc-CHHH-
Confidence 9999999999875 45677777776666665555 556 44666655544433322222 22211 1111
Q ss_pred HHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHH
Q psy8232 162 WQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIH 238 (249)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~ 238 (249)
+.+. ++++......| ..+...+..+.....=|. +.|++ .+|+|+.||+..++..+-.++.++.
T Consensus 173 ---L~~~--------~~~~~~~~~~~-~~lPv~~~Sf~f~~ivPs-l~~~~-~~d~~k~~~ai~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 173 ---LLDA--------PPSPSDWSYIL-PALPVLVFSFGFHNIVPS-LVKYL-GGDPKKIRKAIIIGSLIPLVMYLLW 235 (394)
T ss_pred ---hhcc--------ccccccHHHHH-HHHHHHHHHHHHHhhhHH-HHHHh-CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 01111101112 122222333333333243 34555 4789999999999887666655443
No 25
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.05 E-value=0.0027 Score=56.92 Aligned_cols=136 Identities=10% Similarity=0.038 Sum_probs=86.4
Q ss_pred ehhhhhhhhhccchhhhhcchhHHH--HHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWM--FGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQM 83 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~--~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~ 83 (249)
...+=+..+++.|+...+.|....+ ..+++.++ ...++.+++..+|+ +..+..|+.++.+||..+.+.++...+..
T Consensus 7 ~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~-~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~ 85 (381)
T TIGR00837 7 AGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLM-LHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVL 85 (381)
T ss_pred ehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3334455677788887777654322 22233333 33455566666555 46799999999999999999988777766
Q ss_pred HHHHHHHHHHHHHHHHHHhC------CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q psy8232 84 VLYLALVLYAPAMALHQVTG------LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAM 144 (249)
Q Consensus 84 ~~~~~~q~~~~~~~l~~~~g------i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~ 144 (249)
.........+.+..++.+++ .|..... +...++..|....|.|.+...+.+=...++..+
T Consensus 86 ~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l 151 (381)
T TIGR00837 86 YILTYAYISGGGSILSRLIGEYFGFPWSARAIV-LIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAF 151 (381)
T ss_pred HHHHHHHHHccHHHHHHHHHHhcCCCccHHHHH-HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 66666666676777666553 3444433 334455667888888877766655544444433
No 26
>PRK11017 codB cytosine permease; Provisional
Probab=97.93 E-value=0.0021 Score=58.33 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=86.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh---hcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 25 FGPQLWMFGVSCFFVIPIVGYIF---VPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQV 101 (249)
Q Consensus 25 ~G~~~~~~~~g~~~~~~l~~~~~---~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~ 101 (249)
.|++.+...+...++..+...+. +..=.|.| .+.+..-|.-||++-..+.+++..+..+.|.+.|....+..++..
T Consensus 37 ~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G-~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~ 115 (404)
T PRK11017 37 TGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTG-LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA 115 (404)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56665544343344433322221 22222333 455666777788777888888888999999999999999999999
Q ss_pred hCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHH
Q psy8232 102 TGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVV 161 (249)
Q Consensus 102 ~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~ 161 (249)
+|++.....++..++.+. ...-|.|..-+-+.+-..++.+..+...+....+.||.+++
T Consensus 116 ~~~~~~~~~~i~~~l~~~-~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~ 174 (404)
T PRK11017 116 TGLDINLLIVLSGLLMTV-TAYFGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGL 174 (404)
T ss_pred hCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Confidence 999887766655555544 44557898887776665555554444444455666666544
No 27
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.88 E-value=0.0032 Score=57.09 Aligned_cols=116 Identities=11% Similarity=0.120 Sum_probs=84.7
Q ss_pred hhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCC---ccCHHHHHHhhhChhHHHHHHHHHHHHHH
Q psy8232 8 NFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNN---FTSAYQYFGERFSRNLQLLASTMFTVQMV 84 (249)
Q Consensus 8 t~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~---~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~ 84 (249)
+.++.+.+.-..+.+.++|.+-.|..+-..+.. +.+-..-.|.+ -.+.+|.+++||+|+......+...+..+
T Consensus 29 a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~----~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~ 104 (416)
T COG1914 29 AYVDPGNIATSAQAGAQYGYSLLWVILLSNLMA----YILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGI 104 (416)
T ss_pred hccCchhHHhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 345666666677777777777665443222221 22223334443 56799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccch
Q psy8232 85 LYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMK 127 (249)
Q Consensus 85 ~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~ 127 (249)
..-..|..+.+.-++.++++|..++.++.++.+.+--...|.|
T Consensus 105 at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~~~r 147 (416)
T COG1914 105 ATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLKGYR 147 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhcchH
Confidence 9999999999999999999999999988877665544444343
No 28
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.85 E-value=0.0033 Score=57.14 Aligned_cols=139 Identities=15% Similarity=0.156 Sum_probs=92.3
Q ss_pred ceeehhhhhhhhhccchhhhhcchhHH-HHHHHHHHHHHH--HHHhhhcccccCCcc-----CHHHHHHhhhC-hhHHHH
Q psy8232 4 DQILNFLSSITFIGQPAEVYKFGPQLW-MFGVSCFFVIPI--VGYIFVPFFQKNNFT-----SAYQYFGERFS-RNLQLL 74 (249)
Q Consensus 4 s~~at~~s~~t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l--~~~~~~~~~rr~~~~-----T~~e~l~~Ryg-~~~~~~ 74 (249)
+..++.++.+.+.|.+-....-|-.+. |..+...++... .-..++-++||++.. .+..++++..+ |+...+
T Consensus 55 ~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~l 134 (425)
T TIGR00835 55 TSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVL 134 (425)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHH
Confidence 345677888889999888666665553 555555555433 222345666654332 45678888877 777777
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q psy8232 75 ASTMFTVQM-VLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAM 144 (249)
Q Consensus 75 ~a~~~~l~~-~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~ 144 (249)
.++. ++.. ......|.......++..+++|++...++ ..+...|+..||.|.++-.-..=.-.|....
T Consensus 135 fa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~-l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y 203 (425)
T TIGR00835 135 FAVF-LIASFGIGNMVQANAIASALSNAFNVPKLVTGIV-LTVLTALIIFGGLKRIAKISSVVVPFMALLY 203 (425)
T ss_pred HHHH-HHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 7776 3332 33468899999999997779887765444 4677788999999998866554444444443
No 29
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.84 E-value=0.011 Score=54.35 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=65.7
Q ss_pred ehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCC-ccCHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNN-FTSAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~-~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
++.++++-+++........|-..++..+-..+.....+..++..-+++. .-+..+|.++.|||....+.++...+....
T Consensus 25 g~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~ 104 (452)
T TIGR01773 25 AGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWFWVL 104 (452)
T ss_pred hhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3445565565554545555654443223333444445566666665542 346799999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q psy8232 86 YLALVLYAPAMALHQVTGL 104 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~gi 104 (249)
..+.+..+.+..++...+-
T Consensus 105 ~~~~~~~~~~~~l~~~~~~ 123 (452)
T TIGR01773 105 VIPLEAIAAAGILQYWFPD 123 (452)
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 8888888888888877653
No 30
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.84 E-value=0.0015 Score=56.73 Aligned_cols=93 Identities=12% Similarity=0.177 Sum_probs=73.0
Q ss_pred HHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHh
Q psy8232 41 PIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFY 120 (249)
Q Consensus 41 ~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Y 120 (249)
.+.+......-||.|.++-.|.++.-.|++...+.-...++.++.-...-+.+.|..+++.+|+|+|.+.++....+.+-
T Consensus 50 ~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~ 129 (349)
T COG3949 50 TLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLIL 129 (349)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHH
Confidence 33444445556888999999999999998888888888888877777777777787999999999999977777777776
Q ss_pred hccccchhHHHHH
Q psy8232 121 TTIGGMKAVVWTD 133 (249)
Q Consensus 121 t~~GGl~~v~~td 133 (249)
-..++.++..-.+
T Consensus 130 lfl~~vegi~tvn 142 (349)
T COG3949 130 LFLGRVEGIITVN 142 (349)
T ss_pred HHHhcccceeeeh
Confidence 6777666666444
No 31
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=97.82 E-value=0.0092 Score=53.86 Aligned_cols=122 Identities=7% Similarity=0.039 Sum_probs=82.7
Q ss_pred ehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLY 86 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~ 86 (249)
+++++.+++......+.++|+.-+|..+-..+...++ .-.+-|+-...-.++.|.+++||+|+.+....+...+..+..
T Consensus 15 ~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~-Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~ 93 (390)
T TIGR01197 15 IAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLL-QRLCARLGVVTGLDLAEVCREHYPKVPRITLWILAELAIIAT 93 (390)
T ss_pred HHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-HHHHHHheeecCCCHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence 4567777777778888888888777554333222222 112333333344579999999999877766666666666778
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHH--HHHHHHHhhccccchhH
Q psy8232 87 LALVLYAPAMALHQVTGLNTMMVVSV--MFLVCIFYTTIGGMKAV 129 (249)
Q Consensus 87 ~~~q~~~~~~~l~~~~gi~~~~~~~i--~~~i~~~Yt~~GGl~~v 129 (249)
...|..+.+..++.++|+|.+.++.+ ...+...+...++.|-.
T Consensus 94 ~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~ 138 (390)
T TIGR01197 94 DMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRIL 138 (390)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCceeH
Confidence 88899999999999999998887665 33344445556666543
No 32
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.79 E-value=0.019 Score=52.11 Aligned_cols=209 Identities=12% Similarity=0.030 Sum_probs=115.3
Q ss_pred ehhhhhhhhhccchhhhhcchhHH--HHHHHHHHHHHHHHHhhhccccc-CCccCHHHHHHhhhChhHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLW--MFGVSCFFVIPIVGYIFVPFFQK-NNFTSAYQYFGERFSRNLQLLASTMFTVQM 83 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~--~~~~g~~~~~~l~~~~~~~~~rr-~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~ 83 (249)
+|.+|+ .+++.|-.....|+-.. ...+.+.+ +...++.+.+...+ .+-.++.+..|+.+||+.+.+..+...+..
T Consensus 14 GTaIGA-GmLaLPi~~~~~Gf~~~~~~li~~w~~-m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~ 91 (403)
T PRK15132 14 GTTIGA-GMLAMPLAAAGVGFSVTLILLIGLWAL-MCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLM 91 (403)
T ss_pred hcchhH-HHHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 334433 34566666666665432 12222221 22233444453333 245779999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHH---hhhc
Q psy8232 84 VLYLALVLYAPAMALHQVT------GLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCK---GTLD 154 (249)
Q Consensus 84 ~~~~~~q~~~~~~~l~~~~------gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~---~~~~ 154 (249)
.+.+.+.+.+.+.+++... ++|...+.+.+.++... ...-|.|. .|.++.+++..-++..... ...+
T Consensus 92 y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~-iv~~g~~~---v~~~n~~L~~~~ii~~~~~~~~l~p~ 167 (403)
T PRK15132 92 YALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGG-VVCVGTSS---VDLFNRFLFSAKIIFLVVMLALMMPH 167 (403)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-HHhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999777776554 35666666666555555 45556675 4555555544322222211 1111
Q ss_pred cCCHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHH
Q psy8232 155 IGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNI 234 (249)
Q Consensus 155 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~ 234 (249)
. ..+++ . +.+.+. +. .|. .+...+..++....=|. .-|++ .+|+|++||...++..+-.++
T Consensus 168 ~-~~~~L----~--------~~~~~~--~~-~~~-~iPvl~~SFgfh~iIps-l~~y~-~~~~~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 168 I-HKVNL----L--------TLPLQQ--GL-ALS-AIPVIFTSFGFHGSVPS-IVSYM-GGNIRKLRWVFIIGSAIPLVA 228 (403)
T ss_pred c-CHHHH----h--------cCCccc--cH-HHH-HHHHHHHHhhCCcccHH-HHHHh-CcCHHHHHHHHHHHHHHHHHH
Confidence 1 11111 1 100011 11 222 22222233333333343 44554 679999999999988877776
Q ss_pred HHHHHh
Q psy8232 235 DVIHVM 240 (249)
Q Consensus 235 ~~~~~~ 240 (249)
.++...
T Consensus 229 yl~W~~ 234 (403)
T PRK15132 229 YIFWQL 234 (403)
T ss_pred HHHHHH
Confidence 665543
No 33
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.0034 Score=57.19 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=79.8
Q ss_pred CHHHHHHhhh--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHH
Q psy8232 58 SAYQYFGERF--SRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSF 135 (249)
Q Consensus 58 T~~e~l~~Ry--g~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~i 135 (249)
-+|+++..|| |++-+.+.+++..+.++.|.+.|....+.......++|.++.+++.++++++-+.+ |.|....-+..
T Consensus 80 Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~~ili~g~l~~l~~if-G~r~l~~l~~~ 158 (442)
T COG1457 80 GLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWAGILIIGVLMTLVTIF-GYRALHKLERI 158 (442)
T ss_pred CCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH
Confidence 3566777777 58888999999999999999999999999644458899999999988888877776 89999988888
Q ss_pred HHHHHHHHHHHHHHHhhhccCCH
Q psy8232 136 QVVVLYFAMFAILCKGTLDIGGF 158 (249)
Q Consensus 136 Q~i~~~~~~~~~~~~~~~~~gg~ 158 (249)
-...+........+......++.
T Consensus 159 a~~~~~~lf~~l~~~~~~~~~~~ 181 (442)
T COG1457 159 AVPLLLLLFLYLLALLFRSKGGL 181 (442)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 87777776666666666545444
No 34
>PRK10483 tryptophan permease; Provisional
Probab=97.70 E-value=0.017 Score=52.44 Aligned_cols=211 Identities=8% Similarity=0.006 Sum_probs=114.0
Q ss_pred hhhccchhhhhcchhHH-HHHHHHHHHHHHHHHhhhccccc-CCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHH
Q psy8232 14 TFIGQPAEVYKFGPQLW-MFGVSCFFVIPIVGYIFVPFFQK-NNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVL 91 (249)
Q Consensus 14 t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr-~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~ 91 (249)
.+++.|-.....|+... ...+..-..+...++.+.+.--+ .+-.++..+-|+-.||..+.+..+...+-....+.+-+
T Consensus 28 GMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYi 107 (414)
T PRK10483 28 GMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYI 107 (414)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666432 11111112222233334433222 34467777777888988888877777777777778889
Q ss_pred HHHHHHHHHHh-----CCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHhh
Q psy8232 92 YAPAMALHQVT-----GLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNA 166 (249)
Q Consensus 92 ~~~~~~l~~~~-----gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 166 (249)
.+.+.+++..+ ++|.+.+.++++.+....... |.|.+-+.+.+=...|++..+++......+. ..+.+.+...
T Consensus 108 sg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i-~~~~L~~~~~ 185 (414)
T PRK10483 108 SASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAKVITFFLTFGSLLGHV-QPATLFNVAE 185 (414)
T ss_pred hCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHhcccc
Confidence 99999999887 568888888877777665555 5665544443333333333332222222221 1222211100
Q ss_pred hcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHh
Q psy8232 167 AYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVM 240 (249)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~ 240 (249)
.++......|. .+...+..++....=|.. .|++ .+|.|+.||...++..+-.++.++...
T Consensus 186 -----------~~~~~~~~~~~-alPvl~~SFgfh~iIPsl-~~y~-~~d~~kir~~I~iGs~Iplv~yl~W~~ 245 (414)
T PRK10483 186 -----------SNASYAPYLLM-TLPFCLASFGYHGNVPSL-MKYY-GKDPKTIVKCLVYGTLMALALYTIWLL 245 (414)
T ss_pred -----------ccchhHHHHHH-HHHHHHhhccCCCcchHH-HHHh-CcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000001121 122222233333333554 5555 478899999999998887777666543
No 35
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.63 E-value=0.038 Score=50.74 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=81.6
Q ss_pred eehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHH
Q psy8232 6 ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMV 84 (249)
Q Consensus 6 ~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~ 84 (249)
+++.+|++-|++......+.|-..++..+-..+.....+..++..-.++ ..-...+|.++.||+......++...+..+
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~ 83 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWV 83 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 4566788888885555556675544322222333333455556555443 233789999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q psy8232 85 LYLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAM 144 (249)
Q Consensus 85 ~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~ 144 (249)
...+.+..+.+..++...+ .|.+....+...+... .-+-|.|-....+.+-.++.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 84 LVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTG-SNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HHHHhhHHHhhhHHHHHHHHHHHH
Confidence 7788887777777776544 3333322222222222 223356665554444444444433
No 36
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.55 E-value=0.026 Score=51.43 Aligned_cols=216 Identities=9% Similarity=0.025 Sum_probs=123.2
Q ss_pred hhccchhhhhcchhHH-HHHHHHHHHHHHHHHhhhcccccCCc--cCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHH
Q psy8232 15 FIGQPAEVYKFGPQLW-MFGVSCFFVIPIVGYIFVPFFQKNNF--TSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVL 91 (249)
Q Consensus 15 ~~g~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr~~~--~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~ 91 (249)
++..|=.....|+-.. ...+..........+.+.+-..+.+. .+..|..|+.+||+.|.+..+...+...+...+-.
T Consensus 27 vL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~ 106 (415)
T COG0814 27 VLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYI 106 (415)
T ss_pred hhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3444544444454432 11222223333344445555555433 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-------CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH-HHHH
Q psy8232 92 YAPAMALHQVTG-------LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFS-VVWQ 163 (249)
Q Consensus 92 ~~~~~~l~~~~g-------i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~-~~~~ 163 (249)
.+.++.++..++ .++....++...++.. ...-|-+++- .....+....+..+..........++ +..+
T Consensus 107 ~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~-l~~~~~~~~l---k~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~ 182 (415)
T COG0814 107 VGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAF-LSWLGTLAVL---KITSLLVFGKVIYLVLLVVYLIPHWNPANLF 182 (415)
T ss_pred hcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHH-HHHhchhHHH---HHHHHHHHHHHHHHHHHHHHHhcccCHHHHh
Confidence 999999998876 5677777776666666 4444555543 44445544444433333333222221 1111
Q ss_pred HhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q psy8232 164 RNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKY 243 (249)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~iG~ 243 (249)
..+.. ++......| ..+...+..+.....- .-+++.+..+++|..||....+.....+......+.++
T Consensus 183 ~~~~~----------~~~~~~~~~-~~ipv~vfsF~~h~~i-~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~ 250 (415)
T COG0814 183 ALPSA----------SQSFWKYLL-LAIPVFVFSFGFHGNI-PSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVF 250 (415)
T ss_pred ccccc----------chhhHHHHH-HHhhHHHhhhhCCccc-hHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 001111222 1222222222222111 23566666665556999999999988888888887777
Q ss_pred hhh
Q psy8232 244 VVT 246 (249)
Q Consensus 244 ~~~ 246 (249)
..+
T Consensus 251 ~~~ 253 (415)
T COG0814 251 GCF 253 (415)
T ss_pred Hhc
Confidence 653
No 37
>PRK10249 phenylalanine transporter; Provisional
Probab=97.53 E-value=0.055 Score=49.88 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=79.1
Q ss_pred ehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
++.++++-|++........|-..++..+-..+.....+.-++..-.++ ..-+..+|.+++||+....+.++...+....
T Consensus 34 g~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~ 113 (458)
T PRK10249 34 GGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVL 113 (458)
T ss_pred hcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 445666666665555555565443222222333333445555555443 2337789999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy8232 86 YLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYF 142 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~ 142 (249)
....+..+.+..++...+ .|.+....+. .......-+-|.|.....+..-.++.+.
T Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~l~~~lN~~gv~~~~~i~~~~~~ikv~ 170 (458)
T PRK10249 114 VGMAELTAAGIYMQYWFPDVPTWIWAAAF-FIIINAVNLVNVRLYGETEFWFALIKVL 170 (458)
T ss_pred HHHHHHHHHHHHHHHcCCcCcHHHHHHHH-HHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 788888888888776654 3333322222 2222233334666666555444444443
No 38
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.51 E-value=0.03 Score=51.42 Aligned_cols=207 Identities=10% Similarity=0.053 Sum_probs=110.8
Q ss_pred hcchhHHHHHHHHHHHHHHHHHh---hhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 24 KFGPQLWMFGVSCFFVIPIVGYI---FVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQ 100 (249)
Q Consensus 24 ~~G~~~~~~~~g~~~~~~l~~~~---~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~ 100 (249)
..|++..+..+...++..+.... .+..=.|+|.. .+.+.|..||++-..+.+++..+..+.|.+.|....+..++.
T Consensus 41 ~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~-~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~ 119 (442)
T TIGR00800 41 PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLP-FPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVAL 119 (442)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCC-cchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555554444444443332222 22323444444 345667788877777889999999999999999998766554
Q ss_pred H----hCC----c------hHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHhh
Q psy8232 101 V----TGL----N------TMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNA 166 (249)
Q Consensus 101 ~----~gi----~------~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 166 (249)
+ ++- + ...+.++...+.+..+.++|.|....-+..-.....+...+..+. ..+.+|..+..+..+
T Consensus 120 ~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~ 198 (442)
T TIGR00800 120 MLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAVVPPFAAFGMLIWA-LSKAHGKGPLGELTG 198 (442)
T ss_pred HHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCccccCCC
Confidence 4 332 2 234455555666667889999988877766655544444433333 323333332211100
Q ss_pred hcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q psy8232 167 AYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYV 244 (249)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~iG~~ 244 (249)
+ . +++....++. ..++........+..+..-+.|+. |++|+.++...++.....+...+...++..
T Consensus 199 -----~---~-~~~~~~~~f~-~~~~~~~g~~~s~~~~~~DysRy~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~ 264 (442)
T TIGR00800 199 -----T---L-HGSTGAWAFL-YALSLVIGSFATWATNAPDFTRFG--KSKKTAIWGQFLALPGGFTLTCFFGILGAA 264 (442)
T ss_pred -----C---C-CcchhHHHHH-HHHHHHHHHHHHHHcCchhhhhhc--CCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0111112222 222322223333333444467776 566667777777666665555555555544
No 39
>PRK11375 allantoin permease; Provisional
Probab=97.48 E-value=0.032 Score=51.90 Aligned_cols=199 Identities=8% Similarity=0.065 Sum_probs=106.4
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhhh--cccccCCccCHHHHHHhhhChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8232 24 KFGPQLWMFGVSCFFVIPIVGYIFV--PFFQKNNFTSAYQYFGERFSRNLQLLASTMF-TVQMVLYLALVLYAPAMALHQ 100 (249)
Q Consensus 24 ~~G~~~~~~~~g~~~~~~l~~~~~~--~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~-~l~~~~~~~~q~~~~~~~l~~ 100 (249)
..|++.+...+...++.++...+.. .+.-.+.-.+.+-+.|.-||++-..+.+++. ++..+.|.+.|....+..++.
T Consensus 54 ~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~ 133 (484)
T PRK11375 54 ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLI 133 (484)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677766555545555444433322 2222223344566777788965555666666 467899999999988888775
Q ss_pred Hh-----------------CCch--HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHH
Q psy8232 101 VT-----------------GLNT--MMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVV 161 (249)
Q Consensus 101 ~~-----------------gi~~--~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~ 161 (249)
+. |++. ..+.++.. ++......-|+|..-+-+.+-..++++..+.+.+....+. |++++
T Consensus 134 ~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~-~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-g~~~~ 211 (484)
T PRK11375 134 LIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFW-LVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV-GIGPI 211 (484)
T ss_pred HHHHhcccccccccccccCCCcHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchh
Confidence 43 2221 22222333 3334445678888887777777776665555555555555 45544
Q ss_pred HHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHH
Q psy8232 162 WQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNI 234 (249)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~ 234 (249)
.+.-+++ + . ........+.. .+...+........+..-+.|+ +||+|++.++..++.++...+
T Consensus 212 ~~~~~~~-~---~---~~~~~~~~~~~-~i~~vig~~~~~~~~~~D~tRy--~k~~~~~~~~~~~g~~i~~~~ 274 (484)
T PRK11375 212 FDYIPSG-I---Q---KAENSGFLFLV-VINAVVAVWAAPAVSASDFTQN--AHSFRAQALGQTLGLVVAYIL 274 (484)
T ss_pred hccCccc-c---c---CCcchHHHHHH-HHHHHHHHHHHHHccccchhcc--cCChhhhHHHHHHHHHHHHHH
Confidence 3221111 0 0 01111122221 1111121122222344456886 599999999888766655443
No 40
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.47 E-value=0.07 Score=49.14 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=84.6
Q ss_pred hhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHHH
Q psy8232 8 NFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVLY 86 (249)
Q Consensus 8 t~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~ 86 (249)
+.++++-|++........|-+.++-.+-..+.....+.-++..-.++ ..-+..+|.++.|||....+.++...+.....
T Consensus 26 ~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~ 105 (456)
T PRK10238 26 GAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLV 105 (456)
T ss_pred ccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 34555555555554445555433322323333334444455554443 33478899999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Q psy8232 87 LALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMF 145 (249)
Q Consensus 87 ~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~ 145 (249)
.+.+..+.+..++...+ .|.+....+. .+...+.-+-|.|.....+.+-.++.+..++
T Consensus 106 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~-~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~ 164 (456)
T PRK10238 106 AMAELTAVGKYIQFWYPEIPTWVSAAVF-FVVINAINLTNVKVFGEMEFWFAIIKVIAVV 164 (456)
T ss_pred HHHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88999988888887765 4444433332 3334444455777777666655555554443
No 41
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.47 E-value=0.043 Score=50.71 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=72.7
Q ss_pred hhhhhhhhhccchhhhhcchhH-HHHHHHHHHHHHHHHHhhhcccccCCc-c-CHHHHHHhhhChhHHHHHHHHHHHHHH
Q psy8232 8 NFLSSITFIGQPAEVYKFGPQL-WMFGVSCFFVIPIVGYIFVPFFQKNNF-T-SAYQYFGERFSRNLQLLASTMFTVQMV 84 (249)
Q Consensus 8 t~~s~~t~~g~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~~~~~rr~~~-~-T~~e~l~~Ryg~~~~~~~a~~~~l~~~ 84 (249)
+.++++-+......+...|-.. .+..+-..++....++.+++.-+++.. . ...+|.++.|||....+.++...+...
T Consensus 15 ~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~~ 94 (468)
T TIGR03810 15 SMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPFMGFISAWGYWLSAW 94 (468)
T ss_pred hHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcHHHHHHHHHHHHHHH
Confidence 3344444433333333445332 222223334444556777777777754 3 699999999999999998888766543
Q ss_pred HHHHHHHHHHHHHHHHHhC----CchHHHH--HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q psy8232 85 LYLALVLYAPAMALHQVTG----LNTMMVV--SVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAI 147 (249)
Q Consensus 85 ~~~~~q~~~~~~~l~~~~g----i~~~~~~--~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~ 147 (249)
.............++..++ -+..... .........+...-|.|.....+.+-.+..++.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ 163 (468)
T TIGR03810 95 LGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVF 163 (468)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333443332 1112211 2222223444555678877766665555555444333
No 42
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.45 E-value=0.0058 Score=55.36 Aligned_cols=144 Identities=10% Similarity=0.139 Sum_probs=98.1
Q ss_pred ceeehhhhhhhhhccchhhhhcchhHH-HHHHHHHHHHHH--HHHhhhcccccCCc-----cCHHHHHHhhhC-hhHHHH
Q psy8232 4 DQILNFLSSITFIGQPAEVYKFGPQLW-MFGVSCFFVIPI--VGYIFVPFFQKNNF-----TSAYQYFGERFS-RNLQLL 74 (249)
Q Consensus 4 s~~at~~s~~t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l--~~~~~~~~~rr~~~-----~T~~e~l~~Ryg-~~~~~~ 74 (249)
+-.|+.++.+.+.|.+.....-|-+++ |..+...+++.. .=-.++-++|+.+. -.+.-|+++..| |+...+
T Consensus 27 ~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~ 106 (416)
T PF01235_consen 27 TALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAIL 106 (416)
T ss_pred HHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHH
Confidence 445677888999999988888888775 766666666543 11223556665432 247888888888 888888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8232 75 ASTMFTVQM-VLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAIL 148 (249)
Q Consensus 75 ~a~~~~l~~-~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~ 148 (249)
.++..+... ...-..|...+...++.-+++|++...+ ...+....+.+||+|.+...--.-.-+|.+..++..
T Consensus 107 fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi-~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~ 180 (416)
T PF01235_consen 107 FAIFLIIAFGIGFNMVQANSIADALSSAFGIPPWITGI-ILAILVALVIFGGIKRIAKVSEKLVPFMAILYILGG 180 (416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHH-HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888844433 3336889999999999999999877544 445566789999999987444333333444443333
No 43
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.44 E-value=0.084 Score=48.01 Aligned_cols=209 Identities=8% Similarity=-0.014 Sum_probs=111.8
Q ss_pred hhhccchhhhhcchhHH-HHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHH
Q psy8232 14 TFIGQPAEVYKFGPQLW-MFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVL 91 (249)
Q Consensus 14 t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~ 91 (249)
.+++.|-.....|+... ...+..-+.+...++.+...--+. +-.++..+-|+-.||..+.+.++...+-....+.+-+
T Consensus 26 GMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYi 105 (415)
T PRK09664 26 GMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYI 105 (415)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777676432 122222222333344444443332 4566777777778999999988888887788888899
Q ss_pred HHHHHHHHHHh------CCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHh
Q psy8232 92 YAPAMALHQVT------GLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRN 165 (249)
Q Consensus 92 ~~~~~~l~~~~------gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~~~~~ 165 (249)
.+.|.+++..+ ++|+..+.++++.+.......| .|.+-+.+.+=...+++..++.......+. ..+. +
T Consensus 106 sggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr~l~~~~ii~f~~~~~~l~~~i-~~~~----L 179 (415)
T PRK09664 106 SANGAIISETISMNLGYHANPRIVGICTAIFVASVLWIS-SLAASRITSLFLGLKIISFVIVFGSFFFQV-DYSI----L 179 (415)
T ss_pred hccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cHHH----H
Confidence 99999999887 3567776666666666555554 465544443333333332222222112111 1111 1
Q ss_pred hhcCccccccCCCCCCC-cchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHH
Q psy8232 166 AAYNRTTLLSWNPDPTE-RYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVI 237 (249)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~ 237 (249)
.+.+ .+.+... ....|. .+...+..++....=|. .-|++ .+|.|+.||+.+.+..+-.++.++
T Consensus 180 ~~~~------~~~~~~~~~~~i~~-alPVl~~SFgfh~iIPs-l~~y~-~~d~~~~~kaIl~Gs~IpLviY~~ 243 (415)
T PRK09664 180 RDAT------STTAGTSYFPYIFM-ALPVCLASFGFHGNIPS-LIICY-GKRKDKLIKSVVFGSLLALVIYLF 243 (415)
T ss_pred hcCc------cccccchHHHHHHH-HHHHHHHhhhCCCcchH-HHHHh-CccHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0000000 001221 12222333333333343 44665 478899999999988776665433
No 44
>TIGR00909 2A0306 amino acid transporter.
Probab=97.37 E-value=0.031 Score=50.83 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=71.9
Q ss_pred HHHHhhhcccccCC-ccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C--chHH-------
Q psy8232 42 IVGYIFVPFFQKNN-FTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTG---L--NTMM------- 108 (249)
Q Consensus 42 l~~~~~~~~~rr~~-~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~g---i--~~~~------- 108 (249)
..+..++..-+++. .-...+|.++.+||..+.+.++...+......+.+..+.+..++.+.+ . |...
T Consensus 51 ~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (429)
T TIGR00909 51 FIALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNG 130 (429)
T ss_pred HHHHHHHHHHhhcCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCccc
Confidence 34455555555542 346789999999999999999998888777888888888887776654 2 2221
Q ss_pred ----HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q psy8232 109 ----VVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFA 146 (249)
Q Consensus 109 ----~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~ 146 (249)
...+...+...+..+.|.|...+.+.+=..+.++.+++
T Consensus 131 ~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~ 172 (429)
T TIGR00909 131 GVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLL 172 (429)
T ss_pred ccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 12234455566777778888888777766666655443
No 45
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.36 E-value=0.11 Score=47.98 Aligned_cols=140 Identities=10% Similarity=0.044 Sum_probs=79.1
Q ss_pred ehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhccccc-CCccCHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQK-NNFTSAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr-~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
++.++++-|++........|-..++..+-..+.....+.-++..--. -...+..+|.+++|||....+.++...+....
T Consensus 33 G~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~~gf~~gW~~~~~~~~ 112 (469)
T PRK11049 33 GGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVV 112 (469)
T ss_pred hhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 44566666666555555556643332222222222233334433211 12335779999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q psy8232 86 YLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAI 147 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~ 147 (249)
....+..+.+..++..++ .+.+....+...+..+ .-+-|.|-....+.+-..+.+..++.+
T Consensus 113 ~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~-iN~~g~~~~~~i~~~~~~~kl~~l~~~ 174 (469)
T PRK11049 113 TGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLS-LNLATVKMFGEMEFWFAMIKIVAIVAL 174 (469)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776665 3333333332223333 333477777766655555544444333
No 46
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.32 E-value=0.065 Score=49.58 Aligned_cols=137 Identities=11% Similarity=0.165 Sum_probs=73.3
Q ss_pred hhhhhhhhhccchhhhhcc-hhH-HH-HHHHHHHHHHHHHHhhhcccccCCc--cCHHHHHHhhhChhHHHHHHHHHHHH
Q psy8232 8 NFLSSITFIGQPAEVYKFG-PQL-WM-FGVSCFFVIPIVGYIFVPFFQKNNF--TSAYQYFGERFSRNLQLLASTMFTVQ 82 (249)
Q Consensus 8 t~~s~~t~~g~~g~~y~~G-~~~-~~-~~~g~~~~~~l~~~~~~~~~rr~~~--~T~~e~l~~Ryg~~~~~~~a~~~~l~ 82 (249)
+.+|++ +...|+...+.| -.. ++ +.++ .+.....++.++..-+++.. =...+|.+++|||....+.++...+.
T Consensus 21 ~vIGsG-if~~~~~~~~~~g~~~~~~~wli~-~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~ 98 (473)
T TIGR00905 21 SMIGSG-IFSLPQNLASVAGPGAVIIGWIIT-GVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYIGFMSGWGYWLS 98 (473)
T ss_pred HHHhHH-HHHhHHHHHHhcchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcccccHHHHHHHHHHH
Confidence 334444 333455555444 222 22 2333 33334455667776666644 45889999999999999988877654
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----CchHH--HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q psy8232 83 MVLYLALVLYAPAMALHQVTG----LNTMM--VVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFA 146 (249)
Q Consensus 83 ~~~~~~~q~~~~~~~l~~~~g----i~~~~--~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~ 146 (249)
...............++.+.+ .+++. ...+...+...+.-.-|.|.....+.+=..+.+..+++
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~ 168 (473)
T TIGR00905 99 AWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFL 168 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444443 11222 12222333455667778888887766655554544433
No 47
>PRK11021 putative transporter; Provisional
Probab=97.30 E-value=0.075 Score=48.13 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred ehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
++.+|++-|..........|-...+-.+-..+.....++.++..-+++ +.=...+|.++.|||+.....++...+....
T Consensus 12 g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~~~~ 91 (410)
T PRK11021 12 TSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRVTGWLFLSVIPV 91 (410)
T ss_pred HHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHHHHHHHHHHHHh
Confidence 344555555555544444454443333333344444556666655544 2346789999999999998888887664433
Q ss_pred HHHHHHHHHHHHHHHHhCCch
Q psy8232 86 YLALVLYAPAMALHQVTGLNT 106 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~gi~~ 106 (249)
............++..++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ 112 (410)
T PRK11021 92 GLPAALQIAAGFGQALFGWSS 112 (410)
T ss_pred hHHHHHHHHHHHHHHHcCCCC
Confidence 333333334445566666543
No 48
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.21 E-value=0.1 Score=48.17 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=74.1
Q ss_pred hhhhhhhhccchhhhhcchhH-HHHHHHHHHHHHHHHHhhhcccccCC-cc-CHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 9 FLSSITFIGQPAEVYKFGPQL-WMFGVSCFFVIPIVGYIFVPFFQKNN-FT-SAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 9 ~~s~~t~~g~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~~~~~rr~~-~~-T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
.++++-+.+........|-.+ ++..+-..+.....+.-++..-+++. .- ...+|.++.+|+....+.++...+..+.
T Consensus 17 ~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~~~ 96 (478)
T TIGR00913 17 TIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQWLI 96 (478)
T ss_pred cccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 344444444444444445333 33222223333444455565555543 22 4678999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Q psy8232 86 YLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLY 141 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~ 141 (249)
..+.+..+.+..++...+ .+......+.. +.....-.-|.|.....+.+-..+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~in~~gv~~~~~~~~~~~~~ki 152 (478)
T TIGR00913 97 VLPLELVTASMTIQYWTDKVNPAVWIAIFY-VFIVIINLFGVKGYGEAEFWFSSIKI 152 (478)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 888888888888876554 33333222222 22222333356665555443333333
No 49
>PRK10746 putative transport protein YifK; Provisional
Probab=97.16 E-value=0.2 Score=46.22 Aligned_cols=134 Identities=7% Similarity=-0.005 Sum_probs=78.5
Q ss_pred ehhhhhhhhhccchhhhhcchhHH-HHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLW-MFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMV 84 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~ 84 (249)
++.++++-|++........|-+.. .+.++. +.....+.-++..-.++ ..-+..+|.++-+|+......++...+...
T Consensus 23 g~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g-~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~~Gf~~gw~~~~~~~ 101 (461)
T PRK10746 23 GGTIGVGLFMGAASTLKWAGPSVLLAYIIAG-LFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWM 101 (461)
T ss_pred HhhhhhhHHHHhHHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 344667777766666656665433 233322 22222334445554443 234688999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy8232 85 LYLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYF 142 (249)
Q Consensus 85 ~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~ 142 (249)
...+.|..+.+..++..++ .|.+....+. .+.....-+-|.|-....+..-..+.++
T Consensus 102 ~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~-~~~~~~lN~~gv~~~~~~e~~~~~~ki~ 159 (461)
T PRK10746 102 AVGISEITAIGVYVQFWFPEMAQWIPALIA-VALVALANLAAVRLYGEIEFWFAMIKVT 159 (461)
T ss_pred HHHHHHHHHHHHHHHHccCCCchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7888898898888887765 4444433332 2222333333555554444333333333
No 50
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.15 E-value=0.14 Score=46.79 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=61.1
Q ss_pred HHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhh
Q psy8232 43 VGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYT 121 (249)
Q Consensus 43 ~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt 121 (249)
.++-++..-.++ +.-...+|.++.|||....+.++...+......+....+.+..++..++..+.+...+.......+.
T Consensus 56 ~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l 135 (442)
T TIGR00908 56 FCFSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGI 135 (442)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334455554443 3346788999999999999999988887777778888888888887776433332222223333334
Q ss_pred ccccchhHHHHHHHHHHH
Q psy8232 122 TIGGMKAVVWTDSFQVVV 139 (249)
Q Consensus 122 ~~GGl~~v~~td~iQ~i~ 139 (249)
-.-|.|...+.+.+-.++
T Consensus 136 n~~g~~~~~~i~~~~~~~ 153 (442)
T TIGR00908 136 NILGVGEAAKLEFVVTAV 153 (442)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 444666666655443333
No 51
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.11 E-value=0.22 Score=45.82 Aligned_cols=137 Identities=9% Similarity=0.028 Sum_probs=82.4
Q ss_pred hhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCC-ccCHHHHHHhhhChhHHHHHHHHHHHHHHHH
Q psy8232 8 NFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNN-FTSAYQYFGERFSRNLQLLASTMFTVQMVLY 86 (249)
Q Consensus 8 t~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~-~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~ 86 (249)
+.++++-+++........|-+.++..+-..+.....+.-++..-.++. .-...+|.++.+||....+.++...+.....
T Consensus 23 ~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~~ 102 (457)
T PRK10580 23 SAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV 102 (457)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 334555555544444445654443333333444444555666655553 4577889999999999999999888777777
Q ss_pred HHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Q psy8232 87 LALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMF 145 (249)
Q Consensus 87 ~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~ 145 (249)
...+..+.+..++...+ .|.+...+ ...+...+.-+-|.|.....+.+-.++.+..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~ 161 (457)
T PRK10580 103 AIADVTAFGIYMGVWFPTVPHWIWVL-SVVLIICAVNLMSVKVFGELEFWFSFFKVATII 161 (457)
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHH-HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence 77777777777776654 34333322 233334444445778777777655555554443
No 52
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.10 E-value=0.11 Score=46.83 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=69.7
Q ss_pred cCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHhhccccchhHHH
Q psy8232 57 TSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGL-----NTMMVVSVMFLVCIFYTTIGGMKAVVW 131 (249)
Q Consensus 57 ~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi-----~~~~~~~i~~~i~~~Yt~~GGl~~v~~ 131 (249)
.+.+..-|..||++-..+.+++..+..+.|.+.|....+..++.+.+. +......+. .++.+....-|.|...+
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~-~~l~~~~~~~G~~~i~~ 136 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIV-GILVTLWLLSGPLAFVW 136 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345556677778777888899999999999999999999988887642 233334433 33445555679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q psy8232 132 TDSFQVVVLYFAMFAILCKGTLDI 155 (249)
Q Consensus 132 td~iQ~i~~~~~~~~~~~~~~~~~ 155 (249)
-+.+-..++.+..+........+.
T Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~~~ 160 (386)
T TIGR02358 137 LNNWSVWLLLIATLWLLVVVFSKA 160 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888887777776655554444444
No 53
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.03 E-value=0.16 Score=47.03 Aligned_cols=134 Identities=7% Similarity=-0.013 Sum_probs=71.1
Q ss_pred hhhhhhhhhccchhhhhcchhH-HHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 8 NFLSSITFIGQPAEVYKFGPQL-WMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 8 t~~s~~t~~g~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
+.++++-|.+........|-.+ .+-.+-..+.....+.-++..-+++ ..-...+|.++.||+......++...+....
T Consensus 28 ~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~~gf~~gw~~~~~~~~ 107 (471)
T PRK11387 28 GVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTWTV 107 (471)
T ss_pred hhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3455554544433334445322 2222222233333344445444443 2235889999999999999999988887777
Q ss_pred HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy8232 86 YLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYF 142 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~ 142 (249)
..+.+..+.+..++...+ .+.+....+...+ ....-+-|.|-....+..-.++.++
T Consensus 108 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~in~~gvk~~~~~~~~~~~~ki~ 164 (471)
T PRK11387 108 ALGSSLTAAGFCMQYWFPQVPVWPWCLLFCAL-IFGLNVVSTRFFAEGEFWFSLIKVV 164 (471)
T ss_pred HHHHHHHHHHHHHHhccCcCcHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 777777777766665544 3333333333222 2233334666666555443444333
No 54
>PRK10836 lysine transporter; Provisional
Probab=97.03 E-value=0.28 Score=45.60 Aligned_cols=137 Identities=9% Similarity=0.010 Sum_probs=69.4
Q ss_pred ehhhhhhhhhccchhhhhcchh-HHHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQ-LWMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMV 84 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~-~~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~ 84 (249)
++.++++-|++........|-. ..+..+-..+.....+.-++..-.+. +.-...+|.++-+|+..+.+.++...+...
T Consensus 28 G~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~~~gf~~Gw~~~~~~~ 107 (489)
T PRK10836 28 GGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWA 107 (489)
T ss_pred hhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 3445666666655555555653 23322222333344445556555443 233446666666666666777766665555
Q ss_pred HHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q psy8232 85 LYLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAM 144 (249)
Q Consensus 85 ~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~ 144 (249)
...+.+..+....++...+ .|.+....+ ........-+-|.|.....+.+..+..+..+
T Consensus 108 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~ 167 (489)
T PRK10836 108 VTIAVDLVAAQLVMSWWFPDTPGWIWSAL-FLGVIFLLNYISVRGFGEAEYWFSLIKVTTV 167 (489)
T ss_pred HHHHHHHHHHHHHhhhcCCCCchHHHHHH-HHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 5555666666666665543 333322222 2222233333467766666655555544443
No 55
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.01 E-value=0.02 Score=51.88 Aligned_cols=142 Identities=12% Similarity=0.146 Sum_probs=97.3
Q ss_pred ceeehhhhhhhhhccchhhhhcchhHH-HHHHHHHHHHHH--HHHhhhcccccCC----cc-CHHHHHHhhhC-hhHHHH
Q psy8232 4 DQILNFLSSITFIGQPAEVYKFGPQLW-MFGVSCFFVIPI--VGYIFVPFFQKNN----FT-SAYQYFGERFS-RNLQLL 74 (249)
Q Consensus 4 s~~at~~s~~t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l--~~~~~~~~~rr~~----~~-T~~e~l~~Ryg-~~~~~~ 74 (249)
+-.|+.++.+.+.|.+-....-|-.+. |..+...+++.- .=-.++-++|+++ +. -+.-|+++..| |....+
T Consensus 71 ~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~ 150 (452)
T COG1115 71 TSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVL 150 (452)
T ss_pred HHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHH
Confidence 345667788888888888888777764 555544444432 1123456677543 22 47889999999 888888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q psy8232 75 ASTMFTVQMV-LYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFA 146 (249)
Q Consensus 75 ~a~~~~l~~~-~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~ 146 (249)
.++..++..- ..-..|-.+++..++.-+|+|++..-+ ...+...++.+||.|.+......=.-.|.+..++
T Consensus 151 FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi-~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~ 222 (452)
T COG1115 151 FAFALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGI-VLALLVALVIFGGIKRIAKVSSKVVPFMAILYVL 222 (452)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 8844444333 478999999999999999999766444 4567788999999999876654443334444433
No 56
>PRK15049 L-asparagine permease; Provisional
Probab=96.99 E-value=0.31 Score=45.51 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=76.5
Q ss_pred ehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
++.++++-|++........|-..+...+-..+.....+.-++..-.++ ..-+..+|.++.+|+....++++...+....
T Consensus 41 G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~gf~~GW~~~l~~~~ 120 (499)
T PRK15049 41 GGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAM 120 (499)
T ss_pred hccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 445667777777666666665544322222333333444455555444 3447899999999999999999988776665
Q ss_pred HHHHHHHHHHHHHHHH--h-CCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Q psy8232 86 YLALVLYAPAMALHQV--T-GLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFA 143 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~--~-gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~ 143 (249)
....+..+.+..++.. + +.|.+....+...+...... -|.|.....+.+=.++.++.
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~-~gvk~~~~i~~~~~~iki~~ 180 (499)
T PRK15049 121 TGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM-IGVKWFAEMEFWFALIKVLA 180 (499)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666543 2 24444433333333333322 35555555544444333333
No 57
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.91 E-value=0.33 Score=44.48 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=67.5
Q ss_pred ehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCC-ccCHHHHHHhhhChhHHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNN-FTSAYQYFGERFSRNLQLLASTMFTVQMVL 85 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~-~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~ 85 (249)
++.++++-+.. |+...+.|-...|..+-..++.+..++.++..-.++. .=...+|.+++|||....+.++...+....
T Consensus 21 g~~iGsGif~~-~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~~~ 99 (445)
T PRK10644 21 GNIMGSGVFLL-PANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWI 99 (445)
T ss_pred hhHhhhHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 34455555544 4445555544333222223334445566666655542 237889999999999888888776654333
Q ss_pred HHHHHHHHHHHHHHHHhCCc--hHHHHH--HHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy8232 86 YLALVLYAPAMALHQVTGLN--TMMVVS--VMFLVCIFYTTIGGMKAVVWTDSFQVVVLYF 142 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~gi~--~~~~~~--i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~ 142 (249)
.............+.+.+.. ++...+ +.......+.-.-|.|.....+.+=.+..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i 160 (445)
T PRK10644 100 GNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 33333333334445454421 222111 2122223333444666666555444444333
No 58
>PRK10655 potE putrescine transporter; Provisional
Probab=96.90 E-value=0.33 Score=44.34 Aligned_cols=126 Identities=11% Similarity=0.088 Sum_probs=63.2
Q ss_pred chhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 19 PAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMA 97 (249)
Q Consensus 19 ~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~ 97 (249)
|+...+.|-..++..+-..+.....++.++..-.++ ..=...+|.++.|||..+.+.++...+....-......+....
T Consensus 30 p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y 109 (438)
T PRK10655 30 PTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGY 109 (438)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544555565444322222333333445555543332 2235699999999999988888876654433222223333344
Q ss_pred HHHHhCCc--hHHH--HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q psy8232 98 LHQVTGLN--TMMV--VSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAM 144 (249)
Q Consensus 98 l~~~~gi~--~~~~--~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~ 144 (249)
+..+++.+ +... ..+.......+.-+.|.|-....+.+.....++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l 160 (438)
T PRK10655 110 GTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPV 160 (438)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 45555532 1111 11222233344455677766665555444444433
No 59
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.89 E-value=0.34 Score=44.27 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=98.0
Q ss_pred ehhhhhhhhhccchhhhhcchhHH-HHHHHHHHHHHHHHHhhhccc-ccCCccCHHHHHHhhhChhHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLW-MFGVSCFFVIPIVGYIFVPFF-QKNNFTSAYQYFGERFSRNLQLLASTMFTVQMV 84 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~-rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~ 84 (249)
+.-++.+-|+|....-...|-+-+ .|.++..+..+++ --++... .+-+..|..||-++-+|+....+..+..-+..+
T Consensus 26 GGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iM-RaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv 104 (462)
T COG1113 26 GGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIM-RALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWV 104 (462)
T ss_pred hhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 456888999999999999998875 4555444444333 3344443 345788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q psy8232 85 LYLALVLYAPAMALHQVT-GLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAM 144 (249)
Q Consensus 85 ~~~~~q~~~~~~~l~~~~-gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~ 144 (249)
.....|+.+++..++.-+ ++|.|+..++..++...-... +.|.---++.-=.++...++
T Consensus 105 ~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~-sVk~FGE~EfWfAlIKV~aI 164 (462)
T COG1113 105 LVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLI-SVKVFGELEFWFALIKVAAI 164 (462)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 588888777766666555444 34444444433334443333
No 60
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=96.86 E-value=0.36 Score=44.21 Aligned_cols=175 Identities=12% Similarity=0.044 Sum_probs=97.8
Q ss_pred CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hC---CchHHHHHHHHHHHHHhhccccch
Q psy8232 55 NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQV----TG---LNTMMVVSVMFLVCIFYTTIGGMK 127 (249)
Q Consensus 55 ~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~----~g---i~~~~~~~i~~~i~~~Yt~~GGl~ 127 (249)
...+..|..|+.+||+.+.+..+...+...+.+.+-..++.+.++.. .| .|.+...++...+... ...-|-|
T Consensus 80 ~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~-iv~~G~~ 158 (443)
T PRK13629 80 PSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAF-VIWFGKD 158 (443)
T ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHH-HHHhhHH
Confidence 46789999999999999999999999988888888888888888875 44 3555544444444433 3444567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHhhhcCccccccCCCCCCC-c--chhHHHHHHHHHHHHHHhcCC
Q psy8232 128 AVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTE-R--YSIWSALFGSAFLHIVFYGGN 204 (249)
Q Consensus 128 ~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~ 204 (249)
.+.+...+-...+++.++.+......+- ..+.+. +.+. +..++..+ + ...|.. +-..+..+.....=
T Consensus 159 ~v~kv~~~Lv~~~i~~l~~l~~~LiP~w-~~~~L~-~~~~-------~~~~~~~~~~~~~~l~~~-iPv~v~SF~f~~iI 228 (443)
T PRK13629 159 LMVKVMSYLVWPFIASLVLISLSLIPYW-NSAVID-QVDL-------GSLSLTGHDGILVTVWLG-ISIMVFSFNFSPIV 228 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHh-cCcc-------ccccccccccHHHHHHHH-HHHHHHHHhccccc
Confidence 6666555544444444443333333222 122221 1110 00001100 0 122321 11112222222222
Q ss_pred hHH--HHH-HHh---cCC--HHHHHHHHHHHhhHHHHHHHHHHh
Q psy8232 205 QLQ--IQR-YLT---VDS--AAKARQIDYDQMIMDDNIDVIHVM 240 (249)
Q Consensus 205 ~~~--~qr-~~a---ak~--~k~ar~~~~~~~~~~~~~~~~~~~ 240 (249)
|.+ .|| -+. .|| +|++||....+..+..++.++.++
T Consensus 229 ssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~ 272 (443)
T PRK13629 229 SSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAF 272 (443)
T ss_pred hHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 222 243 557 899999999998888877776654
No 61
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.65 E-value=0.3 Score=45.10 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=122.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHh--hhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 22 VYKFGPQLWMFGVSCFFVIPIVGYI--FVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALH 99 (249)
Q Consensus 22 ~y~~G~~~~~~~~g~~~~~~l~~~~--~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~ 99 (249)
..+.|++.+..-+...++.++.... +..+.-..-....|...|.-||-....+-+++-.+.-+.|-..|....+..++
T Consensus 66 ~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~ 145 (497)
T COG1953 66 LFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVN 145 (497)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3456777654434344444433222 22333223345788999999997777777888888889999999999999998
Q ss_pred HHhC----C---c-----------hHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHH
Q psy8232 100 QVTG----L---N-----------TMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVV 161 (249)
Q Consensus 100 ~~~g----i---~-----------~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~ 161 (249)
.+++ - + ..+..++..=..-.....-|++.+=+-....+.+..+....+.+.+..+.||.+.+
T Consensus 146 llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~ 225 (497)
T COG1953 146 LLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSIL 225 (497)
T ss_pred HHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCcc
Confidence 7753 1 1 11222222334456677889999999999999999998888888888887774332
Q ss_pred HHHhhhcCccccccCCCCCCCcchhHHHHHHHH---HHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHH
Q psy8232 162 WQRNAAYNRTTLLSWNPDPTERYSIWSALFGSA---FLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDD 232 (249)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~ 232 (249)
.+. +.. .++.....|. ++..+ ........+|+.-+.|+ +||+|+.+++-.++-++..
T Consensus 226 ~~~-p~~----------~~~~~~~~w~-~~~~~~~~v~~~Atl~lN~~DFsRf--a~s~~~~~~gq~~gLPv~~ 285 (497)
T COG1953 226 GEL-PAG----------TVSGSNSSWA-FLAGIAAWVGFWATLALNIPDFTRF--AKSQKAQIWGQLVGLPVNF 285 (497)
T ss_pred ccC-CCC----------CCCcchhHHH-HHHHHHHHHHHHHHHhcCCchhhcc--cCChhhhhhccchhhhHHH
Confidence 211 100 1111122332 22222 22233334555556775 6889999999777666554
No 62
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.49 E-value=0.63 Score=42.12 Aligned_cols=202 Identities=11% Similarity=0.174 Sum_probs=103.8
Q ss_pred hcchhHH-HHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 24 KFGPQLW-MFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQV 101 (249)
Q Consensus 24 ~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~ 101 (249)
..|.... ++.++..+..+..++.+.+.-++. +.-...+|.++-+||+.+.+.++...+...+..+.........+...
T Consensus 27 ~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (426)
T PF13520_consen 27 SAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSL 106 (426)
T ss_dssp CTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhcccceeEEEeeccccccccchhhhhhhc
Confidence 3455443 444444444345556666555543 56678899999999999999999998888887777776666666665
Q ss_pred hCCc----hHHHHH--HHHHHHHHhhccccchhHHHHHHHHHHHHHH-HHHHHHHHhhhcc--CCHHHHHHHhhhcCccc
Q psy8232 102 TGLN----TMMVVS--VMFLVCIFYTTIGGMKAVVWTDSFQVVVLYF-AMFAILCKGTLDI--GGFSVVWQRNAAYNRTT 172 (249)
Q Consensus 102 ~gi~----~~~~~~--i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~-~~~~~~~~~~~~~--gg~~~~~~~~~~~~~~~ 172 (249)
++-+ ++.... +...+...-.-+-|.|...+...+=.++.++ .++++........ ++.... ++...
T Consensus 107 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~-----~~~~~- 180 (426)
T PF13520_consen 107 FGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSL-----SFSLS- 180 (426)
T ss_dssp TTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH---------SHS-
T ss_pred cccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccc-----ccccc-
Confidence 5421 122222 2222223334445777777666555555552 2222222222221 112111 11000
Q ss_pred cccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHh
Q psy8232 173 LLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVM 240 (249)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~ 240 (249)
+..++..+ ..+..+ ........+.+ ..-+-.=..|| |+.+|+..++.....++..+...
T Consensus 181 --~~~~~~~~--~~~~~~---~~~~~~~~G~e-~~~~~~~E~k~-k~ip~ai~~~~~~~~i~y~l~~~ 239 (426)
T PF13520_consen 181 --TFFPSGWP--GFLAGF---SVAFFAFSGFE-AIASLAEENKN-KTIPRAIIISIIIVAIIYILFSI 239 (426)
T ss_dssp --CSSCSSSS--HHHHHH---HHHGGGGTTTT-HHHHGGGGSSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCcccc--chhhHH---HHHHhhccccc-ccccccccccc-hhheeecccchhHHHHHHhhhhh
Confidence 11122111 112111 11112223332 22233334777 99999999988887777666543
No 63
>PTZ00206 amino acid transporter; Provisional
Probab=96.46 E-value=0.31 Score=45.17 Aligned_cols=127 Identities=7% Similarity=-0.001 Sum_probs=81.6
Q ss_pred hhhhhccchhhhhcchhH-HH-HHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH
Q psy8232 12 SITFIGQPAEVYKFGPQL-WM-FGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLAL 89 (249)
Q Consensus 12 ~~t~~g~~g~~y~~G~~~-~~-~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~ 89 (249)
+..+++.|....+.|+-. .. ..+...++. .....+.+-.+|.+..|..|.-++-|||+.+.+..+...+..+.....
T Consensus 75 GaGILsLP~Af~~~G~v~giillil~a~ls~-ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~ 153 (467)
T PTZ00206 75 GAGIVGLPSAANSSGLVMAMIYLIIITAMTI-FSIYALGVAADKTNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACVA 153 (467)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777653 22 222222222 122334444455677899999999999999999999999998988889
Q ss_pred HHHHHHHHHHHHhC-C--chH---------HHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Q psy8232 90 VLYAPAMALHQVTG-L--NTM---------MVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVV 139 (249)
Q Consensus 90 q~~~~~~~l~~~~g-i--~~~---------~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~ 139 (249)
-+.-.++.++.++. . +.. ....+...+.+-.+..=-++...++..+-.+.
T Consensus 154 YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~ 215 (467)
T PTZ00206 154 YVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSF 215 (467)
T ss_pred HHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHH
Confidence 99999988887653 1 111 11223334455556666778888887665433
No 64
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.46 E-value=0.69 Score=42.28 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=50.7
Q ss_pred hhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHH-HHH
Q psy8232 8 NFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQ-MVL 85 (249)
Q Consensus 8 t~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~-~~~ 85 (249)
+.+|++-+ -.|+...+.|-...+..+-..++....++.+++.-.++ +.-...+|.++ +|+......++...+. .+.
T Consensus 19 ~~IGsGif-~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~gf~~gw~~~~~~~~~ 96 (435)
T PRK10435 19 NMMGSGIA-LLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAFGFQTGVLYYHANWIG 96 (435)
T ss_pred hHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHHHHHHHHHHHHHHHHH
Confidence 33444444 34555556665544433333445555666676665554 22367888877 8988888888765542 233
Q ss_pred HHHHHHHHHHHHHHHHhC
Q psy8232 86 YLALVLYAPAMALHQVTG 103 (249)
Q Consensus 86 ~~~~q~~~~~~~l~~~~g 103 (249)
..+.+....+ .+..+++
T Consensus 97 ~~~~~~~~~~-y~~~~~p 113 (435)
T PRK10435 97 NLAIGITAVS-YLSTFFP 113 (435)
T ss_pred HHHHHHHHHH-HHHHHcc
Confidence 4444444443 3344443
No 65
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.34 E-value=0.33 Score=44.42 Aligned_cols=203 Identities=15% Similarity=0.129 Sum_probs=99.4
Q ss_pred hhcchhHHHHHH----HHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 23 YKFGPQLWMFGV----SCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMAL 98 (249)
Q Consensus 23 y~~G~~~~~~~~----g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l 98 (249)
...|++.....+ |..++.++.++ .+..=.|.|..++ ..-|.-||++-..+.+++..+..+.|.+.|..-.+..+
T Consensus 35 ~~~gL~~~~ailai~~G~~l~~i~~~~-~~~~G~r~Gl~~~-v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al 112 (440)
T PF02133_consen 35 VALGLSFWQAILAILIGNLLGAILVAL-MGIIGPRTGLPTM-VLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQAL 112 (440)
T ss_dssp HCCCS-HHHHHHHHHHHHHHHHHHHHH-HTHHHHCC---HH-HHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHH-hcccccccCCCch-hcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666544333 34444433332 2333345554332 23334456777888888888999999999999999998
Q ss_pred HHHhCCch----------------HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHH
Q psy8232 99 HQVTGLNT----------------MMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVW 162 (249)
Q Consensus 99 ~~~~gi~~----------------~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~~ 162 (249)
+.+.+... .+..++...++..+....|++....-..+-..++.+..+........+.++ ++.
T Consensus 113 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 190 (440)
T PF02133_consen 113 AALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALRRLAVIAAPILLVVFIGMLIWALSKAGG-GPL- 190 (440)
T ss_dssp HHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT--HHH-
T ss_pred HHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCc-chh-
Confidence 88765321 111222233445566777888877666555554444333333344444433 221
Q ss_pred HHhhhcCccccccCCCCCCCcchhHHHHHHHHHH-HHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy8232 163 QRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFL-HIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMI 241 (249)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~i 241 (249)
.+.+ . ++++.+ ++... +..... +.......+| +.|+ +|++|+.+|...++.....+...+...+
T Consensus 191 ---~~~~-~-----~~~~~~--~~~~~-i~~~~~~~~~~~~~~~D-ysRy--~~~~~~~~~~~~~~~~~~~~~~~~~g~l 255 (440)
T PF02133_consen 191 ---LSAP-A-----SPSPSG--SFLAA-IALVIGSWISWAPNASD-YSRY--AKSDTSAWWGFWLGFPGGFIPFVLVGIL 255 (440)
T ss_dssp ---CCS--------S----S---HHHH-HHHHHCCCHHHHCCCHH-HHTT--C--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhCc-c-----cchhHH--HHHHH-HHHHHhhhhhhhhcccc-HHhh--CCCCCCcEEEEeehhhhHHHHHHHHHHH
Confidence 1110 0 011111 22221 211111 1222222233 4565 4678888888888777666655555555
Q ss_pred hhh
Q psy8232 242 KYV 244 (249)
Q Consensus 242 G~~ 244 (249)
|.+
T Consensus 256 g~~ 258 (440)
T PF02133_consen 256 GAA 258 (440)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 66
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.05 E-value=1.2 Score=40.85 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy8232 40 IPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTV-QMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVC 117 (249)
Q Consensus 40 ~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l-~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~ 117 (249)
....++.++..-+++ +.=....|.++.|||....+.++.... ......+.+..+.+..++..++.+......+...+.
T Consensus 56 ~l~~al~~aEl~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~~ 135 (445)
T PRK11357 56 VIPQMCVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLI 135 (445)
T ss_pred HHHHHHHHHHHHhhcCCCCCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 334445555544433 223566788899999888888886543 334445566666777777667766544333333333
Q ss_pred HHhhccccchhHHHHHHHHHHHH
Q psy8232 118 IFYTTIGGMKAVVWTDSFQVVVL 140 (249)
Q Consensus 118 ~~Yt~~GGl~~v~~td~iQ~i~~ 140 (249)
.+.+.+ ..+++-....+|.++.
T Consensus 136 ~~~~~l-n~~gv~~~~~v~~~~~ 157 (445)
T PRK11357 136 IAFMLL-HLRSVEGGAAFQTLIT 157 (445)
T ss_pred HHHHHH-HHhhhhHHHHHHHHHH
Confidence 333333 3344444444554443
No 67
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=95.92 E-value=1.6 Score=41.41 Aligned_cols=124 Identities=12% Similarity=0.154 Sum_probs=70.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccccCC-ccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy8232 25 FGPQLWMFGVSCFFVIPIVGYIFVPFFQKNN-FTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTG 103 (249)
Q Consensus 25 ~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~-~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~g 103 (249)
.|-...+..+-..+...+.++-++..-.+.. .=+...|.++.+|+....+.++...+......+....+.+..++.+++
T Consensus 60 aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~ 139 (557)
T TIGR00906 60 SGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLN 139 (557)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4544433223233344445666666665553 236677888889999999999988887776677666666665554432
Q ss_pred C--------------ch----HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8232 104 L--------------NT----MMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAIL 148 (249)
Q Consensus 104 i--------------~~----~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~ 148 (249)
. +. .....+...+.......-|.|...+.+.+-..+.+..++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~i 202 (557)
T TIGR00906 140 KQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVI 202 (557)
T ss_pred hhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhh
Confidence 1 10 111112222233345556888888776666555555444333
No 68
>PRK09950 putative transporter; Provisional
Probab=95.54 E-value=1.8 Score=40.57 Aligned_cols=148 Identities=12% Similarity=0.035 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhCCch----HHHHHHHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHh-----hhc-cC
Q psy8232 88 ALVLYAPAMALHQVTGLNT----MMVVSVMFLVCIFYTTIGGM-KAVVWTDSFQVVVLYFAMFAILCKG-----TLD-IG 156 (249)
Q Consensus 88 ~~q~~~~~~~l~~~~gi~~----~~~~~i~~~i~~~Yt~~GGl-~~v~~td~iQ~i~~~~~~~~~~~~~-----~~~-~g 156 (249)
.....-+..-++.++|+|. ...++....++...+...|+ |++-+-.-++..+.+..++.+.+.. ++. ..
T Consensus 206 Glg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli~GPT~fil~~~~~ 285 (506)
T PRK09950 206 VVTAATFTRGLSALTGLPNNFTVQAFVILLSGVIFCLSSYIGIDNGLQRLSKMVGWGAFLFALLVLIVGPTEFITNNIIN 285 (506)
T ss_pred HhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeeccCHHHHHHHHHH
Confidence 3333445556677788765 23333444444555667787 8887777777555443322222211 111 01
Q ss_pred CHHHHHHHhhhcCccccccCCC-CCCCcchhHHHH-HHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHH
Q psy8232 157 GFSVVWQRNAAYNRTTLLSWNP-DPTERYSIWSAL-FGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNI 234 (249)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~ 234 (249)
+..+..++..+. .++ .++ +.++-...|..+ -+.++.|-... --+.-|+--.|+-||.-.+.+....+ ..+
T Consensus 286 siG~yl~~f~~m---s~~-t~~~~~~~w~~~WTiFYWaWWiawaPfv---G~FiARISrGRTIRe~ilg~l~~psl-~~~ 357 (506)
T PRK09950 286 SIGLTTQNFLQM---SLF-TDPMGDGSFTRNWTVFYWLWWISYTPGV---AMFVTRVSRGRKIKEVIWGLILGSSV-GCW 357 (506)
T ss_pred HHHHHHHHHHHH---hcc-CCCCCccCccccChHHHHHHHHHHHHHH---HHHhhhhcCCcCHHHHHHHHHHHHHH-HHH
Confidence 233333443322 111 111 111112334332 23333332222 35789999999999999988775543 333
Q ss_pred HHHHHhhhh
Q psy8232 235 DVIHVMIKY 243 (249)
Q Consensus 235 ~~~~~~iG~ 243 (249)
..+.++-|.
T Consensus 358 ~wf~ifGg~ 366 (506)
T PRK09950 358 FFFGVLESY 366 (506)
T ss_pred HHHHHHHHH
Confidence 444444443
No 69
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.16 E-value=2 Score=38.72 Aligned_cols=129 Identities=12% Similarity=0.210 Sum_probs=74.8
Q ss_pred ceeehhhhhhhhhccchhhhhcchhHHHHHHHH---HHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHH
Q psy8232 4 DQILNFLSSITFIGQPAEVYKFGPQLWMFGVSC---FFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFT 80 (249)
Q Consensus 4 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~---~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~ 80 (249)
.++|-.++++.++=-|..+++.|-+.++..+|+ .++.++.+..-.++ .| .-.|.+++|+||+...+..+...
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~---~g--G~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALAL---VG--GGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeee---cC--CCHHHHHHHhChHHHHHHHHHHH
Confidence 466778899999999999999996644434444 34455555542233 22 35788999999888888777666
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHhCCch-HHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Q psy8232 81 VQMVLYL-----ALVLYAPAMALHQVTGLNT-MMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVV 139 (249)
Q Consensus 81 l~~~~~~-----~~q~~~~~~~l~~~~gi~~-~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~ 139 (249)
+..-|.. +.--+..+ ++.+++.+. .....+...+...-+..=-+|..-..|.+|-++
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~L 140 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFL 140 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHH
Confidence 5444333 33333333 444555421 122222222222222223456777788888776
No 70
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=95.06 E-value=2.9 Score=38.89 Aligned_cols=108 Identities=12% Similarity=0.044 Sum_probs=56.1
Q ss_pred HHHHHHHhhhcccccCCc-cCHHHHHHhhhChhHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhC---CchHHHH--
Q psy8232 39 VIPIVGYIFVPFFQKNNF-TSAYQYFGERFSRNLQLLASTMFTVQ-MVLYLALVLYAPAMA-LHQVTG---LNTMMVV-- 110 (249)
Q Consensus 39 ~~~l~~~~~~~~~rr~~~-~T~~e~l~~Ryg~~~~~~~a~~~~l~-~~~~~~~q~~~~~~~-l~~~~g---i~~~~~~-- 110 (249)
.....++.++..-.++.. =...+|.++.|||....+.++...+. .....+......+.. ++.+.+ .|.+...
T Consensus 89 ~~~~~al~~aELas~~P~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i 168 (501)
T TIGR00911 89 FSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLV 168 (501)
T ss_pred HHHHHHHHHHHHHhhcCCCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 333444556655555432 36889999999998888887765442 222233333333333 232332 2332222
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q psy8232 111 SVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFA 146 (249)
Q Consensus 111 ~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~ 146 (249)
.+.......+.-.-|.|...+.+.+=.++.+..+++
T Consensus 169 ~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~ 204 (501)
T TIGR00911 169 AVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLL 204 (501)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 222233334444557777777666665555544433
No 71
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=93.92 E-value=4.9 Score=36.58 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=66.7
Q ss_pred HHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch------HHHHHHH--H
Q psy8232 44 GYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNT------MMVVSVM--F 114 (249)
Q Consensus 44 ~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~------~~~~~i~--~ 114 (249)
++.++..-++. +.=...+|.++-+|++.....++...+......+......+..++.+.+.+. +....+. .
T Consensus 62 a~~~~el~~~~p~~GG~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (466)
T COG0531 62 ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALAL 141 (466)
T ss_pred HHHHHHHHhcCCCCCCeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHH
Confidence 44444443332 2226889999999988889999999998888888888888888888777431 2222222 2
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 115 LVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCK 150 (249)
Q Consensus 115 ~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~ 150 (249)
.......-.-|.|...+.+.+-.++.++..+++.+.
T Consensus 142 ~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~ 177 (466)
T COG0531 142 IALLTLLNLRGIKASAKINSIITILKIIILLIFIIL 177 (466)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333444577777765555555555544444443
No 72
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=93.91 E-value=5.5 Score=37.17 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=91.2
Q ss_pred HHHHHhhhcccccCCcc-CHHHHHHhhhChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCchHH----HHH
Q psy8232 41 PIVGYIFVPFFQKNNFT-SAYQYFGERFSRNLQLLASTMFTVQM----VLYLALVLYAPAMALHQVTGLNTMM----VVS 111 (249)
Q Consensus 41 ~l~~~~~~~~~rr~~~~-T~~e~l~~Ryg~~~~~~~a~~~~l~~----~~~~~~q~~~~~~~l~~~~gi~~~~----~~~ 111 (249)
+.++++.-+|-|+.+.. +....+++|-++..+.+.-++.+++. ..-++....-++.-++.++|+|... .++
T Consensus 144 l~~ay~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii 223 (485)
T PF02028_consen 144 LAIAYFFYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIII 223 (485)
T ss_dssp HHHHHHHHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHH
T ss_pred HHHheeeeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 33444444433333433 34566676665444544444444332 2233334444566677888876422 233
Q ss_pred HHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHh-----hhc-cCCHHHHHHHhhhcCccccccCCCCCCCc-
Q psy8232 112 VMFLVCIFYTTIGGM-KAVVWTDSFQVVVLYFAMFAILCKG-----TLD-IGGFSVVWQRNAAYNRTTLLSWNPDPTER- 183 (249)
Q Consensus 112 i~~~i~~~Yt~~GGl-~~v~~td~iQ~i~~~~~~~~~~~~~-----~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (249)
+...++...+..-|+ |++-+-.-++..+.+..++.+.+.. ++. ..+..+..++..+. .+ +.++..+++
T Consensus 224 ~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~---s~-~t~~~~~~~~ 299 (485)
T PF02028_consen 224 IVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRM---SL-WTDPFGNSGQ 299 (485)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---HT---TTTTTTTH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---hc-ccccccCccc
Confidence 333333444556666 6777766666666544333333222 111 12334444444432 11 111211111
Q ss_pred -chhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy8232 184 -YSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIK 242 (249)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~iG 242 (249)
.+.|..+ .+..|+.....---+.-|.--.|+-||.-.+.+....+. .+..+.++-|
T Consensus 300 w~~~WTvF--YwaWWiawaPfvG~FiArISkGRTIRE~il~~~~~psl~-~~~wf~ifGg 356 (485)
T PF02028_consen 300 WPQDWTVF--YWAWWIAWAPFVGLFIARISKGRTIREFILGVLLVPSLF-CFLWFSIFGG 356 (485)
T ss_dssp HHHHTHHH--HHHHHHHTHHHHHHHHHHCTTTSBHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred ccCCCHHH--HHHHHHHHHHHHHHHHhhhcCCcCHHHHHHHHHHhhHHH-HHHHHHHHCc
Confidence 1334332 222333222111246799999999999998877754433 3333444433
No 73
>PLN03074 auxin influx permease; Provisional
Probab=93.01 E-value=7.3 Score=36.21 Aligned_cols=80 Identities=8% Similarity=0.013 Sum_probs=47.2
Q ss_pred CHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHhhccccchhHHHHHHHH
Q psy8232 58 SAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVT-GLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQ 136 (249)
Q Consensus 58 T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~-gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ 136 (249)
+-.|..+.++||..+.+......+..+.....++...+..+..+. .+|......+..++.+.-+.+=-++...+...+-
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig 200 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 200 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHH
Confidence 346777778898888877777766666666777777666665542 2443433344444444444444466666655443
Q ss_pred H
Q psy8232 137 V 137 (249)
Q Consensus 137 ~ 137 (249)
.
T Consensus 201 ~ 201 (473)
T PLN03074 201 L 201 (473)
T ss_pred H
Confidence 3
No 74
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=92.75 E-value=8.1 Score=35.71 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhCCch----HHHHHHHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHh-----hhcc-CCH
Q psy8232 90 VLYAPAMALHQVTGLNT----MMVVSVMFLVCIFYTTIGGM-KAVVWTDSFQVVVLYFAMFAILCKG-----TLDI-GGF 158 (249)
Q Consensus 90 q~~~~~~~l~~~~gi~~----~~~~~i~~~i~~~Yt~~GGl-~~v~~td~iQ~i~~~~~~~~~~~~~-----~~~~-gg~ 158 (249)
...-++.-++.++|+|. ...++.....+...+...|+ |++-+-.-++..+.+..+..+.+.. ++.. .+.
T Consensus 161 g~~qi~~gl~~l~gi~~~~~~~~~ii~~i~~~f~~S~~~Gl~kGIk~LS~~n~~l~~~ll~fvli~Gpt~fil~~~~~s~ 240 (453)
T TIGR00842 161 GAPQINAGLSALFGIPDSFWLQALIILCVTALACISVASGVGKGIKILSNINMALAFLLLLFVLIVGPTVFLLNSFVDSI 240 (453)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 33334556777788774 22233333344455566666 7777666666555444332222211 1111 133
Q ss_pred HHHHHHhhhcCccccccCCC-CCC-CcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHH
Q psy8232 159 SVVWQRNAAYNRTTLLSWNP-DPT-ERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDV 236 (249)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~ 236 (249)
.+..++..+. .++ .++ +.. +-...|..+ .+..|+.....--.+.-|+--.|+-||.-.+.+....+ ..+..
T Consensus 241 G~yl~~f~~m---s~~-t~~~~~~~~w~~~WTiF--YWaWwiawaPfvG~FiARISrGRTIRe~ilg~~~~psl-~~~~w 313 (453)
T TIGR00842 241 GNYLQNFPQM---SFR-TDPFDGKGGWPGNWTVF--YWAWWISWSPFVGMFIARISRGRTIREFIFGVLLGPTA-FTYLW 313 (453)
T ss_pred HHHHHHHHHH---hcc-CCCCCCccCccccchHH--HHHHHHHHHHHHHhheeeecCCcCHHHHHHHHHHHHHH-HHHHH
Confidence 4444444432 111 111 111 112334332 22223322222235678999999999999887775433 33334
Q ss_pred HHHhhh
Q psy8232 237 IHVMIK 242 (249)
Q Consensus 237 ~~~~iG 242 (249)
+.++-|
T Consensus 314 f~ifGg 319 (453)
T TIGR00842 314 FSVFGN 319 (453)
T ss_pred HHHHhH
Confidence 444443
No 75
>KOG1303|consensus
Probab=92.71 E-value=7.3 Score=35.83 Aligned_cols=174 Identities=12% Similarity=0.075 Sum_probs=98.4
Q ss_pred ccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CchHHHHHHHHHHHHHhhccccch
Q psy8232 56 FTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTG--------LNTMMVVSVMFLVCIFYTTIGGMK 127 (249)
Q Consensus 56 ~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~g--------i~~~~~~~i~~~i~~~Yt~~GGl~ 127 (249)
..+.+|.-++-||++.|.+.+....+..+......+...++.++.+.. .+...-+++++.+.+..+.+=-..
T Consensus 104 ~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~ 183 (437)
T KOG1303|consen 104 RYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFH 183 (437)
T ss_pred CCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcc
Confidence 366999999999955588888888877777777777777777776643 112355677777777777665555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-hccCCHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChH
Q psy8232 128 AVVWTDSFQVVVLYFAMFAILCKGT-LDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQL 206 (249)
Q Consensus 128 ~v~~td~iQ~i~~~~~~~~~~~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (249)
+.-|-...=.++-..-..++.+... +..| . +-++. ...+. ++.+.. + .-++......+...+-|.
T Consensus 184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~-~-----~~~~~---~~~~~--~~~~~~--f-~a~g~iaFaf~gH~v~pe 249 (437)
T KOG1303|consen 184 SLSYLSLVGAVMSTLYAVILIVLGIADGVG-F-----CAPSG---GYLDL--GTIPTV--F-TALGIIAFAYGGHAVLPE 249 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccc-c-----CCccc---CcccC--CCCcch--h-hhhhheeeeecCCeeeee
Confidence 5555444433332222222222211 1111 0 00001 00111 111100 1 111211111111222232
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHhhhhhhh
Q psy8232 207 QIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVT 246 (249)
Q Consensus 207 ~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~iG~~~~ 246 (249)
.|. +.|++++.+|+...+......+.++....|+.++
T Consensus 250 -Iq~--tMk~p~~f~~~~lis~~~~~~~y~~vai~GY~aF 286 (437)
T KOG1303|consen 250 -IQH--TMKSPPKFKKALLISYIIVTFLYFPVAIIGYWAF 286 (437)
T ss_pred -hHh--hcCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344 7788888999999999999999999999998775
No 76
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=92.17 E-value=10 Score=35.55 Aligned_cols=144 Identities=6% Similarity=-0.010 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhCCchH----HHHHHHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHH---h--hhc-cCCHH
Q psy8232 91 LYAPAMALHQVTGLNTM----MVVSVMFLVCIFYTTIGGM-KAVVWTDSFQVVVLYFAMFAILCK---G--TLD-IGGFS 159 (249)
Q Consensus 91 ~~~~~~~l~~~~gi~~~----~~~~i~~~i~~~Yt~~GGl-~~v~~td~iQ~i~~~~~~~~~~~~---~--~~~-~gg~~ 159 (249)
..-++.-++.++|++.. ..+++...++...+...|+ |++-+-.-++..+.+..++.+.+. . ++. ..+..
T Consensus 212 ~~qi~~gl~~l~Gi~~~~~~~~~ii~~i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli~GPT~fil~~~~~s~G 291 (504)
T PRK03356 212 TPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVGGTSFIMNYFTDSVG 291 (504)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHH
Confidence 33345567778887653 2233333344455566666 777766666655544433322222 1 111 11334
Q ss_pred HHHHHhhhcCccccccCCCC-CCCcchhHHHH-HHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHH
Q psy8232 160 VVWQRNAAYNRTTLLSWNPD-PTERYSIWSAL-FGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVI 237 (249)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~ 237 (249)
+..++..+.. ++ .++. ..+-...|..+ -+.++.|-... --+.-|+--.|+-||.-.+.+....+ ..+..+
T Consensus 292 ~yl~nf~~ms---~~-t~~~~~~~w~~~WTiFYWaWWiawaPfv---G~FiARISrGRTIRE~ilg~l~~psl-~~~~wf 363 (504)
T PRK03356 292 MLLMYLPRML---FY-TDPIGKGGFPQGWTVFYWAWWVIYAIQM---SIFLARISRGRTVRELCFGMVLGLTA-STWILW 363 (504)
T ss_pred HHHHHHHHHh---cC-CCCCCccCccccCHHHHHHHHHHHHHHH---HHHHHHHcCCCcHHHHhhhhhHHHHH-HHHHHH
Confidence 4444444321 11 1111 11112334332 12233332222 24789999999999999887775543 333334
Q ss_pred HHhhh
Q psy8232 238 HVMIK 242 (249)
Q Consensus 238 ~~~iG 242 (249)
.++-|
T Consensus 364 ~ifGg 368 (504)
T PRK03356 364 TVLGS 368 (504)
T ss_pred HHHhH
Confidence 44433
No 77
>PRK09928 choline transport protein BetT; Provisional
Probab=91.88 E-value=13 Score=36.11 Aligned_cols=152 Identities=9% Similarity=0.045 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchH----HHHHHHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHH---h--
Q psy8232 82 QMVLYLALVLYAPAMALHQVTGLNTM----MVVSVMFLVCIFYTTIGGM-KAVVWTDSFQVVVLYFAMFAILCK---G-- 151 (249)
Q Consensus 82 ~~~~~~~~q~~~~~~~l~~~~gi~~~----~~~~i~~~i~~~Yt~~GGl-~~v~~td~iQ~i~~~~~~~~~~~~---~-- 151 (249)
..++..+.|+ ..-++.++|++.. ..+++....+...+...|+ |++-+-.-++..+.+..++.+.+. .
T Consensus 210 TSLGlGv~qi---~~GL~~lfGi~~~~~~q~~ii~vi~~i~~~S~~sGl~KGIk~LS~lN~~La~~LllfVli~GPT~fi 286 (679)
T PRK09928 210 TTLGIGVVQL---NYGLSVLFDIPESLAAQAALIALSVIIATISVTSGVNKGIRVLSELNVLLALGLILFVLFMGDTSFL 286 (679)
T ss_pred HHHHHHHHHH---HHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeccCHHHH
Confidence 3444444444 4456667787642 2333334444555666677 777766666655543322222211 1
Q ss_pred hhcc-CCHHHHHHHhhhcCccccccCCCCCCCcchhHHHH-HHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhh
Q psy8232 152 TLDI-GGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSAL-FGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMI 229 (249)
Q Consensus 152 ~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~ 229 (249)
++.. .+.++..++..+.. .+....++ +.+-...|..+ -+.++.|.... --+.-|+--.|+-||.-.+.++...
T Consensus 287 l~~~~~siG~yl~~f~~ms-f~t~~~~~-~~~W~~~WTiFYWAWWiaWaPFV---GlFIARISRGRTIREfilgvllvPs 361 (679)
T PRK09928 287 LNALVLNVGDYVNRFMGMT-LNSFAFDR-PTEWMNNWTLFFWAWWVAWSPFV---GLFLARISRGRTIRQFVLGTLIIPF 361 (679)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCCCCCC-CCCcccccHHHHHHHHHHHHHHH---HHHHhhhcCCccHHHHHHHHHHHHH
Confidence 1110 12333334433221 11111111 11122335433 23334443332 2478999999999999888777443
Q ss_pred HHHHHHHHHHhhh
Q psy8232 230 MDDNIDVIHVMIK 242 (249)
Q Consensus 230 ~~~~~~~~~~~iG 242 (249)
...+..+.++-|
T Consensus 362 -l~~~~WfsIfGg 373 (679)
T PRK09928 362 -TFTLLWLSIFGN 373 (679)
T ss_pred -HHHHHHHHHHhh
Confidence 333344444444
No 78
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=91.87 E-value=0.53 Score=43.50 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=83.6
Q ss_pred ehhhhhhhhhccchhhhhcchhHH-HHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLW-MFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMV 84 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~ 84 (249)
++.++.+.+.+......+.|-.+. ...+-..+...+.+.-++..-|+. ..-+..+|.++=.|+......++...+..+
T Consensus 8 g~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~~ 87 (478)
T PF00324_consen 8 GGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLSYI 87 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHHHH
Confidence 344566677777666666666333 222222333333334445555554 334667777777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH--h-CCc-hHHH----HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8232 85 LYLALVLYAPAMALHQV--T-GLN-TMMV----VSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAIL 148 (249)
Q Consensus 85 ~~~~~q~~~~~~~l~~~--~-gi~-~~~~----~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~ 148 (249)
...+.+..+.+..++.. . +.+ .+.. ..+..+++ .....=|.|.....+..=.++.++.++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 88 AAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLI-TLLNLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhh-hhhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 88999999999888876 2 344 2222 22322333 333344777777777665555555444333
No 79
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=91.84 E-value=9.2 Score=34.27 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=37.8
Q ss_pred ccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 52 QKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALH 99 (249)
Q Consensus 52 rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~ 99 (249)
-|++-.|++|..++--||+.|.+..+...+..+...+.-....+..+.
T Consensus 109 vR~~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 109 VRHKGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378889999999999999999988888887777666666555555554
No 80
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=91.27 E-value=12 Score=34.55 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=54.7
Q ss_pred hhhccchhhhhcchhH-HHHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHH
Q psy8232 14 TFIGQPAEVYKFGPQL-WMFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVL 91 (249)
Q Consensus 14 t~~g~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~ 91 (249)
.+...++.+.+.|=.+ .|..+-..++....+.-++..-.++ ..=...+|.++.+||....+.++...+......+...
T Consensus 33 gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~ 112 (475)
T TIGR03428 33 TIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAA 112 (475)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHH
Confidence 4555566666554433 3433334455555666667666655 3346888999999999999998888876665555555
Q ss_pred HHHHHHHH
Q psy8232 92 YAPAMALH 99 (249)
Q Consensus 92 ~~~~~~l~ 99 (249)
.+....+.
T Consensus 113 ~~~~~~~~ 120 (475)
T TIGR03428 113 IALQVVLP 120 (475)
T ss_pred HHHHHHHH
Confidence 55555543
No 81
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=90.65 E-value=14 Score=34.31 Aligned_cols=64 Identities=8% Similarity=0.239 Sum_probs=40.1
Q ss_pred hhcchhHH-HHHHHHHHHHHHHHHhhhcccccCC--ccCHHHHHHhhhChhHHHHHHHHHHHHHHHH
Q psy8232 23 YKFGPQLW-MFGVSCFFVIPIVGYIFVPFFQKNN--FTSAYQYFGERFSRNLQLLASTMFTVQMVLY 86 (249)
Q Consensus 23 y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr~~--~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~ 86 (249)
...|.+.. |+.++..+..+..+..++..-.++. .=...+|.++-+|++.+.+.++......+.+
T Consensus 33 ~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~~ 99 (496)
T PRK15238 33 YLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIW 99 (496)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 34566654 5555555544455555666655553 3589999999999888887766544444433
No 82
>KOG1304|consensus
Probab=90.09 E-value=9.3 Score=35.18 Aligned_cols=162 Identities=12% Similarity=0.122 Sum_probs=111.9
Q ss_pred HhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CchHHHHHHHHHHHHHhhccccchhHHHHHHHHH
Q psy8232 64 GERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTG------LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQV 137 (249)
Q Consensus 64 ~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~g------i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~ 137 (249)
.++||+..|...-...++..+++..+-+.=++.-++.+.+ +|...-+++.....+.-..+.=+|-.+-...+--
T Consensus 131 ~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~An 210 (449)
T KOG1304|consen 131 LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFAN 210 (449)
T ss_pred HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHH
Confidence 7889999999999999998888887777777777777765 4455556666777788888899999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhc-CChHHHHHHHhcCC
Q psy8232 138 VVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYG-GNQLQIQRYLTVDS 216 (249)
Q Consensus 138 i~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~qr~~aak~ 216 (249)
+++++++.++..+...+.-+.++ .+ +..+.+-|..++|.++..+=..+ +-| .| -+.|+
T Consensus 211 v~~~~g~~ii~~y~~~~~~~~~~---------~~--------~~~~~~~~~lf~GtaifafEGig~VLP--lE--n~Mk~ 269 (449)
T KOG1304|consen 211 VFILVGLAIIMYYLVQDLPPTSD---------LP--------AVTGWSGLPLFFGTAIFAFEGIGMVLP--LE--NSMKK 269 (449)
T ss_pred HHHHHHHHHHHHHHHhccCCccc---------cc--------cccchhhhHHHHHHHHHHhccceEEEe--hh--hcccC
Confidence 99999888877766654322211 00 11112224456666544321111 111 01 26788
Q ss_pred HHHHH---HHHHHHhhHHHHHHHHHHhhhhhhh
Q psy8232 217 AAKAR---QIDYDQMIMDDNIDVIHVMIKYVVT 246 (249)
Q Consensus 217 ~k~ar---~~~~~~~~~~~~~~~~~~~iG~~~~ 246 (249)
+|+-+ +..-.+..+...+.....+.|+.+.
T Consensus 270 P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~f 302 (449)
T KOG1304|consen 270 PQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAF 302 (449)
T ss_pred hhhcCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988 7777888888888888888888764
No 83
>TIGR00930 2a30 K-Cl cotransporter.
Probab=89.73 E-value=25 Score=35.75 Aligned_cols=88 Identities=11% Similarity=0.185 Sum_probs=54.3
Q ss_pred CHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHHhhccccch
Q psy8232 58 SAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLN----------TMMVVSVMFLVCIFYTTIGGMK 127 (249)
Q Consensus 58 T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~----------~~~~~~i~~~i~~~Yt~~GGl~ 127 (249)
-...|+++-+|+......++...+....-.+....+.+..+..+++-+ ....+....++++....+-|+|
T Consensus 144 G~Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk 223 (953)
T TIGR00930 144 GAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGME 223 (953)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHH
Confidence 456678888998888888888877777777888888887777776411 1111222333334445555777
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8232 128 AVVWTDSFQVVVLYFAMF 145 (249)
Q Consensus 128 ~v~~td~iQ~i~~~~~~~ 145 (249)
-....+.+=.++.+++++
T Consensus 224 ~~ak~q~vl~vi~ll~ll 241 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSIL 241 (953)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555444444444433
No 84
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=89.64 E-value=17 Score=33.57 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=53.5
Q ss_pred hhhccchhhhhcchhHH-HHHHHHHHHHHHHHHhhhcccccC-CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHH
Q psy8232 14 TFIGQPAEVYKFGPQLW-MFGVSCFFVIPIVGYIFVPFFQKN-NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVL 91 (249)
Q Consensus 14 t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr~-~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~ 91 (249)
++.+.|.. ...|.+.. ++.++..+..+..++.++..-+++ +.-...+|.++.||++.....++...+....+...++
T Consensus 18 ~~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~ 96 (474)
T TIGR03813 18 SLRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVL 96 (474)
T ss_pred HhhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655 46787664 444444444444555566554443 2346779999999999999988877776666666555
Q ss_pred HHHHHHHH
Q psy8232 92 YAPAMALH 99 (249)
Q Consensus 92 ~~~~~~l~ 99 (249)
...+..++
T Consensus 97 ~~~~~~~~ 104 (474)
T TIGR03813 97 TFGAVSLA 104 (474)
T ss_pred HHHHHHHH
Confidence 54444444
No 85
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=87.92 E-value=24 Score=33.24 Aligned_cols=150 Identities=11% Similarity=0.193 Sum_probs=94.9
Q ss_pred ehhhhhhhhhccchhhhhcchhHHH--HHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhh-ChhHHHHHHHHHHHHH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQLWM--FGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERF-SRNLQLLASTMFTVQM 83 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~~~--~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ry-g~~~~~~~a~~~~l~~ 83 (249)
+..+|.+-++|.-..-.+-|-.+.. |.+.......++ .=++..--.+....--.=...|| ++......++...+..
T Consensus 57 GG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm-~sLGEma~~~P~sGsF~~ya~rfvdpa~GFa~gWnYw~~w 135 (541)
T COG0833 57 GGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVM-QSLGELAVFYPVSGSFSTYATRFVDPAFGFALGWNYWLNW 135 (541)
T ss_pred ccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCchhhhhhhhcCchHHHHHHHHHHHHH
Confidence 4557777888887777777766542 222222221111 11222222222111122335677 5888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHh-hhccCCH
Q psy8232 84 VLYLALVLYAPAMALHQVT--GLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKG-TLDIGGF 158 (249)
Q Consensus 84 ~~~~~~q~~~~~~~l~~~~--gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~-~~~~gg~ 158 (249)
..-++.|+.+.+.+++.-+ .+|.+..+.++.+++.+...+ |.|+-.-++..=..+.++.++...+.. ....||.
T Consensus 136 ~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~-~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~ 212 (541)
T COG0833 136 AVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLF-GVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGG 212 (541)
T ss_pred HHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHh-cccccceehHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986 358888888888888888877 677766666665666555444433333 2334544
No 86
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=85.77 E-value=31 Score=32.30 Aligned_cols=67 Identities=7% Similarity=0.018 Sum_probs=37.4
Q ss_pred hhhccchhhhhcchhHH-HHHHHHHHHHHHHHHhhhcccccC--CccCHHHHHHhhhChhHHHHHHHHHHH
Q psy8232 14 TFIGQPAEVYKFGPQLW-MFGVSCFFVIPIVGYIFVPFFQKN--NFTSAYQYFGERFSRNLQLLASTMFTV 81 (249)
Q Consensus 14 t~~g~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~~~~~rr~--~~~T~~e~l~~Ryg~~~~~~~a~~~~l 81 (249)
+..+.| ..+++|.+.. |+.++..+-.+..++.++..-..+ +.-...+|.++-+|++.+.+..+..-+
T Consensus 21 ~~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~ 90 (507)
T TIGR00910 21 AVYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGERFGFAAIFFGWF 90 (507)
T ss_pred HHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCccHHHHHHHHHHH
Confidence 344555 3567888875 444444333333455555554322 234677788888887777665444333
No 87
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=85.24 E-value=31 Score=31.76 Aligned_cols=222 Identities=10% Similarity=0.084 Sum_probs=104.0
Q ss_pred eehhhhhhhhhccchhhhhcchhHH-HHHHH--HHHHHH--HHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHH
Q psy8232 6 ILNFLSSITFIGQPAEVYKFGPQLW-MFGVS--CFFVIP--IVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFT 80 (249)
Q Consensus 6 ~at~~s~~t~~g~~g~~y~~G~~~~-~~~~g--~~~~~~--l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~ 80 (249)
+++-++-+.+--.|-.++++|=.+. ..++- ..++.+ +.=+.++|+.|+....+..+.-++|..+..++.--....
T Consensus 19 ~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~G~~gv~~~~ 98 (439)
T COG0733 19 AGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGF 98 (439)
T ss_pred HHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhhhhHHHHHHH
Confidence 4455666677778899999987653 22221 122322 222333455555444444444433444444444222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-----------------chH-HHHHHHHHHHHHhhccccc-hhHHHHHHHHHHHH
Q psy8232 81 VQMVLYLALVLYAPAMALHQVTG-L-----------------NTM-MVVSVMFLVCIFYTTIGGM-KAVVWTDSFQVVVL 140 (249)
Q Consensus 81 l~~~~~~~~q~~~~~~~l~~~~g-i-----------------~~~-~~~~i~~~i~~~Yt~~GGl-~~v~~td~iQ~i~~ 140 (249)
+...-|..+.-=...+....++| + +.. ........+...++...|. |++-..+.+..-.+
T Consensus 99 ~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~~kimMP~L 178 (439)
T COG0733 99 LILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGIEKANKIMMPLL 178 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 22222333332233333333332 1 111 2222334444555555666 55888887777777
Q ss_pred HHHHHHHHHHhhhccCCHHHHHHHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHH
Q psy8232 141 YFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKA 220 (249)
Q Consensus 141 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~a 220 (249)
++..+++.+.+....|-.+++.--+..+ .+...+...|....|..+..+.... .-...---+..|++ +.
T Consensus 179 fvl~i~Lvi~~~tLpGA~~G~~f~l~PD---------~s~l~~~~v~~~AlGQ~FFsLSlG~-g~mitYsSYL~k~~-~l 247 (439)
T COG0733 179 FVLFIILVIRAVTLPGAMEGLKFLFKPD---------FSKLTDPKVWLAALGQAFFSLSLGF-GIMITYSSYLSKKS-DL 247 (439)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHhcCC---------HHHcCchhhHHHHHHHHHHHHHHHH-HHHHHHHhhcCccc-ch
Confidence 7767767777776555444443222211 1111112345555666665443321 11122223444444 45
Q ss_pred HHHHHHHhhHHHHHHHHH
Q psy8232 221 RQIDYDQMIMDDNIDVIH 238 (249)
Q Consensus 221 r~~~~~~~~~~~~~~~~~ 238 (249)
.++....+..+..+.++.
T Consensus 248 ~~sa~~v~~~n~~~s~lA 265 (439)
T COG0733 248 VSSALSIVLLNTLISLLA 265 (439)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 555555566666655443
No 88
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=79.42 E-value=52 Score=30.35 Aligned_cols=63 Identities=8% Similarity=-0.131 Sum_probs=36.0
Q ss_pred HHHHHHHhhhcccccCC-ccCHHH----HHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 39 VIPIVGYIFVPFFQKNN-FTSAYQ----YFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQV 101 (249)
Q Consensus 39 ~~~l~~~~~~~~~rr~~-~~T~~e----~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~ 101 (249)
..+..+.-++..-.++. .=...+ .+++|+|+....+..+...+......+.+..+.+..+...
T Consensus 59 ~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~ 126 (482)
T TIGR00907 59 GSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGI 126 (482)
T ss_pred HHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455565544432 223444 5556667777777777777766666666666666555543
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=78.79 E-value=30 Score=31.80 Aligned_cols=131 Identities=12% Similarity=0.156 Sum_probs=68.5
Q ss_pred cceeehhhhhhhhhccchhhhhcchhHHHHHHHHH---HHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHH
Q psy8232 3 GDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCF---FVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMF 79 (249)
Q Consensus 3 ~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~---~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~ 79 (249)
..++|-.+|++..+=-|..+++.|-+.++-.+|.. +++++.+.+-.-+.+. +. |=+.+|-||+...+.....
T Consensus 10 ~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~~~-~~----~~l~~~v~~~f~~if~~~i 84 (427)
T PF05525_consen 10 FALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKSGG-GI----EDLASRVGPKFALIFTILI 84 (427)
T ss_pred HHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CH----HHHhcccCcHHHHHHHHHH
Confidence 34667778888888889999999988877666653 4455555432222222 33 3345566655555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Q psy8232 80 TVQMVLYLALVLYAPAMALH----QVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVV 139 (249)
Q Consensus 80 ~l~~~~~~~~q~~~~~~~l~----~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~ 139 (249)
.+..-|..+ -....+...| .+++.+..+...+...+...-+..==+|-.-..|.+==++
T Consensus 85 ~l~IGP~~a-iPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~L 147 (427)
T PF05525_consen 85 YLSIGPLFA-IPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFL 147 (427)
T ss_pred HHHHHhccc-CcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 443333322 1222222222 3344333444444444433333333456777777665333
No 90
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=78.36 E-value=59 Score=30.39 Aligned_cols=52 Identities=4% Similarity=-0.330 Sum_probs=42.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHhhhhhhh
Q psy8232 195 FLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVT 246 (249)
Q Consensus 195 ~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~iG~~~~ 246 (249)
+..+..+-..|+++|+....|++|++|+..+...+......++..+.|.+..
T Consensus 246 l~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 297 (493)
T COG0591 246 LGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYF 297 (493)
T ss_pred hhhhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556667999998888888999999999999999988888888887654
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=76.75 E-value=63 Score=29.84 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=58.1
Q ss_pred CHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhcc
Q psy8232 58 SAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTI 123 (249)
Q Consensus 58 T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~ 123 (249)
=+.+..++.+|+..+.+.++...+.++.-......+.+..++..+++++...+.+.+++...-+-+
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHh
Confidence 355667888999999999999999999999999999999999998899999888888887777766
No 92
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=75.63 E-value=0.054 Score=48.70 Aligned_cols=130 Identities=9% Similarity=0.084 Sum_probs=80.6
Q ss_pred hhhhhccchhhhhcchhH-HHHHHHHHHHHHHHHHhhhcccc----cCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHH
Q psy8232 12 SITFIGQPAEVYKFGPQL-WMFGVSCFFVIPIVGYIFVPFFQ----KNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLY 86 (249)
Q Consensus 12 ~~t~~g~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~~~~~r----r~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~ 86 (249)
+...++.|-..++.|+-. ....+............+.+-.+ +.+..|.+|.-++-|||+.+.+..+...+.....
T Consensus 18 G~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~ 97 (409)
T PF01490_consen 18 GAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGPKGKWFVDICIFIYLFGS 97 (409)
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccchheeccccc
Confidence 445666777777777653 22222222222222333333333 3578999999999999888999998888887777
Q ss_pred HHHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Q psy8232 87 LALVLYAPAMALHQVTG-------LNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLY 141 (249)
Q Consensus 87 ~~~q~~~~~~~l~~~~g-------i~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~ 141 (249)
....+...+..++.+.+ .+.....++...++.--+..-=++...+...+-.+.+.
T Consensus 98 ~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~ 159 (409)
T PF01490_consen 98 CVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIF 159 (409)
T ss_pred cceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccc
Confidence 77777777777776654 24445555556666666666666666666655544433
No 93
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=69.65 E-value=99 Score=29.39 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=55.5
Q ss_pred hhhhhhccchhhhhcc-hhH-HHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q psy8232 11 SSITFIGQPAEVYKFG-PQL-WMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLA 88 (249)
Q Consensus 11 s~~t~~g~~g~~y~~G-~~~-~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~ 88 (249)
+++=++| |-.+.++| +.+ +|..+|..++--+==++..=.=-|+|-.|++|..++--|+..+.+..+..++.++...+
T Consensus 67 GAGPivG-PvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~A 145 (575)
T COG1966 67 GAGPIVG-PALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVFFLLLALILLILVGA 145 (575)
T ss_pred ccCcchh-HHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333 66777888 444 47666654433221111111124778899999999999999999988887777666666
Q ss_pred HHHHHHHHHHHH
Q psy8232 89 LVLYAPAMALHQ 100 (249)
Q Consensus 89 ~q~~~~~~~l~~ 100 (249)
.-.....+.+..
T Consensus 146 vfa~vv~~~l~~ 157 (575)
T COG1966 146 VFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHhh
Confidence 655555555553
No 94
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=66.88 E-value=1.2e+02 Score=28.78 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHh--hccccc-hhHHHHHHHHHHHHHHHHHH
Q psy8232 72 QLLASTMFTVQMVLYLALVLYAPAMALHQVTGLN--TMMVVSVMFLVCIFY--TTIGGM-KAVVWTDSFQVVVLYFAMFA 146 (249)
Q Consensus 72 ~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~--~~~~~~i~~~i~~~Y--t~~GGl-~~v~~td~iQ~i~~~~~~~~ 146 (249)
.++..+..+-..+.+.+.|+.+ -++.++|+| ..+-..+.++++.++ +...|. |++-+..-++..+..+.++.
T Consensus 196 aiiaTl~GiATsLG~ga~qi~~---Gl~~l~gip~~~~~q~~iI~vi~~~~~~S~~sGv~KGIr~LS~~n~~la~~lllf 272 (537)
T COG1292 196 AIIATLFGIATSLGLGALQLTA---GLSYLFGIPNSFAVQAIIIAVITALFTISVWSGLDKGIRVLSNINMVLAFLLLLF 272 (537)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH---HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666666554 466777877 233334444444433 333455 77777776666664443333
Q ss_pred HHHHh---h--hcc-CCHHHHHHHhhhcCccccccCCCCCCCcchhHHHH-HHHHHHHHHHhcCChHHHHHHHhcCCHHH
Q psy8232 147 ILCKG---T--LDI-GGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSAL-FGSAFLHIVFYGGNQLQIQRYLTVDSAAK 219 (249)
Q Consensus 147 ~~~~~---~--~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~qr~~aak~~k~ 219 (249)
+.+.. + +.. .+.++..++..... ....... +.+-...|..+ -..++.|-... ..+.-|+--.|+.||
T Consensus 273 vli~GPT~fll~~~~~~iG~yl~nf~~ms-~~t~p~~--~~~w~~~WTiFYWaWWisWsPfV---G~FIARISrGRTIRE 346 (537)
T COG1292 273 VLIVGPTLFLLNSFVDNIGLYLQNFVQMS-FFTDPYG--DGGWPQGWTVFYWAWWISWSPFV---GMFIARISRGRTIRE 346 (537)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHH-cccCcCC--CCCcccchHHHHHHHHHHHhHHH---HHHHHHHhCCccHHH
Confidence 33222 1 110 12233333333221 0001111 11112234322 12333332222 357899999999999
Q ss_pred HHHHHHHHhh
Q psy8232 220 ARQIDYDQMI 229 (249)
Q Consensus 220 ar~~~~~~~~ 229 (249)
.--+.++...
T Consensus 347 fi~gvl~~P~ 356 (537)
T COG1292 347 FIVGVLLIPT 356 (537)
T ss_pred HHHHHHHHhH
Confidence 8887766433
No 95
>KOG1287|consensus
Probab=65.12 E-value=1.2e+02 Score=28.32 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=61.3
Q ss_pred hcccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHhC---CchHHHHHHHHHHHHHhhc
Q psy8232 48 VPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYL-ALVLYAPAMA-LHQVTG---LNTMMVVSVMFLVCIFYTT 122 (249)
Q Consensus 48 ~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~-~~q~~~~~~~-l~~~~g---i~~~~~~~i~~~i~~~Yt~ 122 (249)
+-.++|.|.. .-|+.+-||+.......+...+...+.. +.+....+.. ++..++ .|....-.+..+...+-+.
T Consensus 71 GT~ipksGgd--~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~ 148 (479)
T KOG1287|consen 71 GTSIPKSGGD--YAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTL 148 (479)
T ss_pred hccccCCCcc--hhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHH
Confidence 3456776543 3477888998888888888877666666 7777777775 777774 5555554554444433333
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q psy8232 123 IGGMKAVVWTDSFQVVVLYFAM 144 (249)
Q Consensus 123 ~GGl~~v~~td~iQ~i~~~~~~ 144 (249)
=+..++=|+-.+|.+..+.=+
T Consensus 149 -~n~~~V~~a~~vq~~ft~~Kl 169 (479)
T KOG1287|consen 149 -INSFSVKWATRVQIVFTIAKL 169 (479)
T ss_pred -HhhhhhhHHHHHHHHHHHHHH
Confidence 366677788888877755433
No 96
>PRK15015 carbon starvation protein A; Provisional
Probab=63.27 E-value=1.5e+02 Score=28.88 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=35.0
Q ss_pred cCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 53 KNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMAL 98 (249)
Q Consensus 53 r~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l 98 (249)
|++-.|+.|..++.-|++.+.+..+...+.++..++.-...+.+.+
T Consensus 141 R~~GrSig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 141 RRDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred cCCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999988888777777766666665555555444
No 97
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=61.60 E-value=1.3e+02 Score=27.62 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=58.7
Q ss_pred CHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHH
Q psy8232 58 SAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVV 130 (249)
Q Consensus 58 T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~ 130 (249)
=+.+.-++-+|+.-+.+.++...+.|+--...-+.+.+..++..++ +||...+.+.+.+-.+-+-. |+...+
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian~-Gl~~Ii 334 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIANL-GLDQII 334 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 3555666778899999999999999999999999999999999999 99999888877666665555 555544
No 98
>KOG1286|consensus
Probab=59.37 E-value=1.7e+02 Score=28.00 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=62.9
Q ss_pred eehhhhhhhhhccchhhhhcchhHHHH-HHHHHHHHHHHHHhhhcccccCCc--cCHHHHHHhhhChhHHHHHHHHHHHH
Q psy8232 6 ILNFLSSITFIGQPAEVYKFGPQLWMF-GVSCFFVIPIVGYIFVPFFQKNNF--TSAYQYFGERFSRNLQLLASTMFTVQ 82 (249)
Q Consensus 6 ~at~~s~~t~~g~~g~~y~~G~~~~~~-~~g~~~~~~l~~~~~~~~~rr~~~--~T~~e~l~~Ryg~~~~~~~a~~~~l~ 82 (249)
+++-+|++-++|.-...++.|-.+... ++-.....+....-++.+--|... -+..-|-.+-.|+......++...+-
T Consensus 42 iGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l~ 121 (554)
T KOG1286|consen 42 IGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGESLAFAIGWNYLLE 121 (554)
T ss_pred ecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCcHHHHHHHHHHHHH
Confidence 456678888888888888887666422 221223333333333443333322 12233333344678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8232 83 MVLYLALVLYAPAMALHQVT 102 (249)
Q Consensus 83 ~~~~~~~q~~~~~~~l~~~~ 102 (249)
.+.-.+.|..+.+..++..+
T Consensus 122 y~i~~a~e~~a~s~~~~~w~ 141 (554)
T KOG1286|consen 122 YVIGLAAEARAWSSYLDYWT 141 (554)
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999986
No 99
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=57.70 E-value=1.3e+02 Score=26.29 Aligned_cols=66 Identities=14% Similarity=0.271 Sum_probs=33.7
Q ss_pred HhCCchHHHHHHHHHHHHHhhccccchhHHH------HHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHhhh
Q psy8232 101 VTGLNTMMVVSVMFLVCIFYTTIGGMKAVVW------TDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAA 167 (249)
Q Consensus 101 ~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~------td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 167 (249)
..|..+.+.....+.+..+-+-+-..|...- ..-.+.++++.+.. ....++.+.|..+.+.+.+.+
T Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~l~~tG~~~~la~~l~~ 290 (351)
T PF03600_consen 219 VSGLVPIWIALLIGALLALLTNCKDLKEAYRVLNSGASIDWNTLLFFAGLF-IFVGALSNTGAFEALADWLLS 290 (351)
T ss_pred HhccCcHHHHHHHHHHHHHHHhcccchhhhHHHHhhccchHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 5665554444444444444444444444443 33345555555444 344456666666666666554
No 100
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=54.73 E-value=1.6e+02 Score=26.51 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=59.7
Q ss_pred CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHhhccccchhHHH
Q psy8232 55 NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTG-LNTMMVVSVMFLVCIFYTTIGGMKAVVW 131 (249)
Q Consensus 55 ~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~~v~~ 131 (249)
+..-+.|..++-+|+.-+.+.++...++++.-....+.+.+..++.+.. +|+...+++. .++......+|+....-
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~-~l~s~~ia~~Gl~~Ii~ 329 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVF-TLFSFIVANLGLTQIIS 329 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHhCHHHHHH
Confidence 4555778888889999999999999999999999999999999999854 7777755554 55555556668776664
No 101
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=49.98 E-value=2.1e+02 Score=26.31 Aligned_cols=129 Identities=12% Similarity=0.171 Sum_probs=69.1
Q ss_pred eeehhhhhhhhhccchhhhhcchhHHHHHHHH---HHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHH
Q psy8232 5 QILNFLSSITFIGQPAEVYKFGPQLWMFGVSC---FFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTV 81 (249)
Q Consensus 5 ~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~---~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l 81 (249)
++|-.++++..+=-|..+++.|-+.++-..|. ++++++.+.+-.-+..+ |..++. +|=||+...+.+....+
T Consensus 14 LFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~-~~~~l~----~~i~~~fg~~f~~~iyL 88 (431)
T COG1114 14 LFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGG-GVESLA----TRIGPWFGVLFAIAIYL 88 (431)
T ss_pred HHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCC-CHHHHh----hhccchHHHHHHHHHHH
Confidence 45566777888878899999998887766664 46677776654444433 555544 45555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Q psy8232 82 QMVLYLALVLYAPAMALH----QVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVV 139 (249)
Q Consensus 82 ~~~~~~~~q~~~~~~~l~----~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~ 139 (249)
..-|+.+. .......+| .+.+-+......+...+...-+..=-++..-..|.+--++
T Consensus 89 sIGPffAi-PRt~~vsfe~~i~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~L 149 (431)
T COG1114 89 SIGPFFAI-PRTGAVSFEVGISPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFL 149 (431)
T ss_pred HhcccccC-CcccchhHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 43333321 111222222 1222223333444444443333344467777777665544
No 102
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=46.10 E-value=2.3e+02 Score=25.68 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=37.1
Q ss_pred ccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q psy8232 56 FTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLN 105 (249)
Q Consensus 56 ~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~ 105 (249)
....+|.+|..+|+..+.+.++-.+-+-..-.....++...+++.++|++
T Consensus 279 ~~~~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~ 328 (390)
T TIGR01197 279 LFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWR 328 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33477889999999888887776666555555556667888899999865
No 103
>KOG1291|consensus
Probab=43.91 E-value=2.8e+02 Score=25.98 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=69.8
Q ss_pred hhhhhhhhccchhhhhcchhHHHHHH-HHHHHHHHHHHhhhcccccCCccC---HHHHHHhhhChhHHHHHHHHHHHHHH
Q psy8232 9 FLSSITFIGQPAEVYKFGPQLWMFGV-SCFFVIPIVGYIFVPFFQKNNFTS---AYQYFGERFSRNLQLLASTMFTVQMV 84 (249)
Q Consensus 9 ~~s~~t~~g~~g~~y~~G~~~~~~~~-g~~~~~~l~~~~~~~~~rr~~~~T---~~e~l~~Ryg~~~~~~~a~~~~l~~~ 84 (249)
++..+.+-+.-+.+.++|..-+|.-+ +...++ +.-+.--|.|..| ++|.=++.|.|..|....+..=++.+
T Consensus 42 YlDPGN~etdlqaGA~~~YkLLwilL~a~~~al-----llQ~LaARLGvVTG~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI 116 (503)
T KOG1291|consen 42 YLDPGNIETDLQAGARAGYKLLWILLLANFMAL-----LLQRLAARLGVVTGKHLAEICREEYPKWPRMVLWIMAEIAII 116 (503)
T ss_pred EecCCcchhhhhcchhhchhHHHHHHHHHHHHH-----HHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 44555555666677777777766543 333333 2334445677777 55555666668888887777666666
Q ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy8232 85 LYLALVLYAPAMALHQVTGLNTMMVVSVMFL 115 (249)
Q Consensus 85 ~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~ 115 (249)
.-=..|.+|.+..++.++++|-+.++++..+
T Consensus 117 ~sDiqEVIGTAiAlniL~~IPL~~GVliTil 147 (503)
T KOG1291|consen 117 ASDIQEVIGTAIALNILSNIPLWAGVLITIL 147 (503)
T ss_pred HhhHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 5556688899999999999999999888766
No 104
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=36.77 E-value=3.5e+02 Score=25.07 Aligned_cols=130 Identities=11% Similarity=0.117 Sum_probs=71.6
Q ss_pred cceeehhhhhhhhhccchhhhhcchhHHHHHHHH---HHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHH
Q psy8232 3 GDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSC---FFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMF 79 (249)
Q Consensus 3 ~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~---~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~ 79 (249)
+.++|-.+|++..+=-|..+++.|-+.++-.+|. .+++++.+.+-.-+. | -+. |=+.+|-||+...+.....
T Consensus 15 ~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~---~-g~~-~~l~~rv~~~f~~~f~~~i 89 (439)
T PRK15433 15 FMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV---G-GGV-DSLSTPIGKVAGVLLATVC 89 (439)
T ss_pred HHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc---C-CCH-HHHhhhcchHHHHHHHHHH
Confidence 3456777888888888999999998877655554 355555554332222 2 133 4456788877777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Q psy8232 80 TVQMVLYLALVLYAPAMALH----QVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVV 139 (249)
Q Consensus 80 ~l~~~~~~~~q~~~~~~~l~----~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~ 139 (249)
.+..-|..+ -....+..+| .+++-+ ....++...+...-+..=-+|-.-..|.+==++
T Consensus 90 ~l~IGP~~a-iPRtaavsfEm~i~p~~~~~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~L 151 (439)
T PRK15433 90 YLAVGPLFA-TPRTATVSFEVGIAPLTGDS-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFL 151 (439)
T ss_pred HHHHhhccc-cCCccccchhheeeccCCcc-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHH
Confidence 555444433 1222233333 223321 223333444443334444567777777665444
No 105
>KOG1289|consensus
Probab=28.72 E-value=5.2e+02 Score=24.67 Aligned_cols=46 Identities=9% Similarity=-0.006 Sum_probs=35.6
Q ss_pred ccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 56 FTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQV 101 (249)
Q Consensus 56 ~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~ 101 (249)
+....++-.+||++...++++....+......+...++.+......
T Consensus 117 y~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~ 162 (550)
T KOG1289|consen 117 YFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGA 162 (550)
T ss_pred HHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHH
Confidence 4566777788999999999999988887777777777766666544
No 106
>PRK00701 manganese transport protein MntH; Reviewed
Probab=24.28 E-value=5.6e+02 Score=23.55 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=48.0
Q ss_pred CccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH-----HHHHHHHHHHHHhh-ccc----
Q psy8232 55 NFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTM-----MVVSVMFLVCIFYT-TIG---- 124 (249)
Q Consensus 55 ~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~~-----~~~~i~~~i~~~Yt-~~G---- 124 (249)
+.....|.+|..+|+..+.+.++-.+-+-+.-......+...++|.++|++.. ........+..+.. ..|
T Consensus 292 ~~~~~a~~L~p~~G~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~ 371 (439)
T PRK00701 292 DIEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELD 371 (439)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34568888999999877777666544332222333455556678888776321 11111112222222 223
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy8232 125 GMKAVVWTDSFQVVVLYFAMF 145 (249)
Q Consensus 125 Gl~~v~~td~iQ~i~~~~~~~ 145 (249)
=.+-..+.+++|++++-...+
T Consensus 372 p~~lli~aqv~~~i~LP~~~~ 392 (439)
T PRK00701 372 PTRLLVLSQVVLSFGLPFALI 392 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777666544333
No 107
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=23.73 E-value=1.6e+02 Score=18.14 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=15.9
Q ss_pred cccccCCccCHHHHHHhhhCh
Q psy8232 49 PFFQKNNFTSAYQYFGERFSR 69 (249)
Q Consensus 49 ~~~rr~~~~T~~e~l~~Ryg~ 69 (249)
+|-.|-.-.|+.|++++||++
T Consensus 25 ~R~~rp~g~~L~eLl~~k~~~ 45 (47)
T PF11654_consen 25 NREGRPEGHSLNELLRRKWNK 45 (47)
T ss_pred HhccCCCCCcHHHHHHHHhhc
Confidence 444445677999999999974
No 108
>PF06322 Phage_NinH: Phage NinH protein; InterPro: IPR010454 This entry is represented by Bacteriophage 933W, NinH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.80 E-value=70 Score=20.81 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=13.4
Q ss_pred CCccCHHHHHHhhhCh
Q psy8232 54 NNFTSAYQYFGERFSR 69 (249)
Q Consensus 54 ~~~~T~~e~l~~Ryg~ 69 (249)
....|+||++-+-||+
T Consensus 3 a~I~TIPelLi~~~Gn 18 (64)
T PF06322_consen 3 AEITTIPELLIETYGN 18 (64)
T ss_pred ceeeehhHHHHHHhCc
Confidence 3568999999999993
No 109
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=21.95 E-value=2e+02 Score=20.58 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=21.7
Q ss_pred CccCHHHHHHhhhC-------hhHHHHHHHHHHHHHHHHHHHH
Q psy8232 55 NFTSAYQYFGERFS-------RNLQLLASTMFTVQMVLYLALV 90 (249)
Q Consensus 55 ~~~T~~e~l~~Ryg-------~~~~~~~a~~~~l~~~~~~~~q 90 (249)
...+-.||++..|+ |-+.++.++......+..++.+
T Consensus 29 ~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e 71 (103)
T PF06422_consen 29 TYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATE 71 (103)
T ss_pred cEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999987 3444555555554444444443
No 110
>PRK10472 low affinity gluconate transporter; Provisional
Probab=21.79 E-value=1.7e+02 Score=27.03 Aligned_cols=46 Identities=7% Similarity=0.056 Sum_probs=33.0
Q ss_pred HHHHHHhhhcccccCC-ccCHHHHHHhhhC-hhHHHHHHHHHHHHHHH
Q psy8232 40 IPIVGYIFVPFFQKNN-FTSAYQYFGERFS-RNLQLLASTMFTVQMVL 85 (249)
Q Consensus 40 ~~l~~~~~~~~~rr~~-~~T~~e~l~~Ryg-~~~~~~~a~~~~l~~~~ 85 (249)
.+..+..+++.+++.| ...+.|-+.+++| |+..+...+...+..+|
T Consensus 68 iI~lGailG~lLe~SGaa~~IA~~i~~~fG~kr~~~A~~l~g~iv~iP 115 (445)
T PRK10472 68 VVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAHYAIGLAGLICALP 115 (445)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHcCcccHHHHHHHHHHHHhhH
Confidence 4445566788888875 6789999999999 77777666665543333
No 111
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=21.77 E-value=3.7e+02 Score=20.57 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=14.5
Q ss_pred cccccCCccCHHHHHHhhhC----hhHHHHHHHHHHH
Q psy8232 49 PFFQKNNFTSAYQYFGERFS----RNLQLLASTMFTV 81 (249)
Q Consensus 49 ~~~rr~~~~T~~e~l~~Ryg----~~~~~~~a~~~~l 81 (249)
+.--|.|.+---|++.+|.+ +..+.+..++.++
T Consensus 54 ~~~~~~~~Hi~Vd~l~~~lp~~~~~~l~~l~~l~~~~ 90 (157)
T PRK09877 54 IVAFMDNAHVQVTFLVEKLSPANQRRVSLLTHSLILL 90 (157)
T ss_pred HHHHhcCCeeeeehHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33333443333455555555 4444444444433
No 112
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=20.86 E-value=2.6e+02 Score=23.41 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=32.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHH-Hhhhh
Q psy8232 205 QLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIH-VMIKY 243 (249)
Q Consensus 205 ~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~-~~iG~ 243 (249)
.|..+|.....|.|..+|.-++......+....+ +++.+
T Consensus 121 ~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~ 160 (238)
T PF03609_consen 121 VHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAV 160 (238)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999888888777777 66543
No 113
>PF14150 YesK: YesK-like protein
Probab=20.71 E-value=1.4e+02 Score=20.58 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=9.1
Q ss_pred HHHHHhhhC-hhHHHHHH
Q psy8232 60 YQYFGERFS-RNLQLLAS 76 (249)
Q Consensus 60 ~e~l~~Ryg-~~~~~~~a 76 (249)
+-++++||. |...++.+
T Consensus 16 S~~lr~r~p~k~~~~il~ 33 (81)
T PF14150_consen 16 SVLLRKRFPKKQPEIILP 33 (81)
T ss_pred HHHHHHhCCCcchhHHHH
Confidence 345566666 44445544
No 114
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.70 E-value=6.7e+02 Score=23.05 Aligned_cols=31 Identities=6% Similarity=0.321 Sum_probs=17.6
Q ss_pred CHHHHHHhhhCh-----hHHHHHHHHHHHHHHHHHH
Q psy8232 58 SAYQYFGERFSR-----NLQLLASTMFTVQMVLYLA 88 (249)
Q Consensus 58 T~~e~l~~Ryg~-----~~~~~~a~~~~l~~~~~~~ 88 (249)
...|..++++.+ +-+.....+.++..+.+..
T Consensus 249 ~~~~~~~~~~~~lg~~s~~Ek~~~~i~~~~i~lw~~ 284 (471)
T PF00939_consen 249 DGKEFIKKELKELGPMSKKEKKVLVIFLLTILLWIT 284 (471)
T ss_pred hhHHHHHHHHHhcCCCchhHhhhhhhhhhhhhcccC
Confidence 456778888751 3345555555555555554
Done!