Query psy8232
Match_columns 249
No_of_seqs 118 out of 1041
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 22:04:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 100.0 2.1E-38 7.3E-43 293.4 18.4 244 2-246 28-280 (530)
2 2xq2_A Sodium/glucose cotransp 100.0 1.4E-37 4.8E-42 291.4 20.0 244 2-246 57-309 (593)
3 2jln_A MHP1; hydantoin, transp 98.6 5.8E-07 2E-11 82.3 13.9 129 26-156 55-191 (501)
4 3l1l_A Arginine/agmatine antip 98.2 0.0002 7E-09 63.7 19.6 217 8-240 22-244 (445)
5 3gia_A Uncharacterized protein 97.4 0.038 1.3E-06 48.8 21.1 110 40-149 52-167 (444)
6 2wsw_A BCCT family betaine/car 95.3 1.7 5.7E-05 39.5 18.8 142 80-230 209-362 (509)
7 4djk_A Probable glutamate/gamm 93.8 3.5 0.00012 36.7 16.8 113 24-136 37-159 (511)
8 4ain_A Glycine betaine transpo 93.4 0.95 3.3E-05 41.3 11.9 175 58-242 180-378 (539)
9 2a65_A Leutaa, Na(+):neurotran 29.5 3.1E+02 0.011 24.6 15.3 45 112-156 173-218 (519)
10 2bzw_B BCL2-antagonist of cell 25.6 32 0.0011 17.4 1.2 14 61-74 5-18 (27)
11 3dct_B Nuclear receptor coacti 20.9 41 0.0014 15.9 1.1 16 206-221 6-21 (21)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.1e-38 Score=293.40 Aligned_cols=244 Identities=22% Similarity=0.334 Sum_probs=192.6
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTV 81 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l 81 (249)
+.|+.||++|+++++|.||.+|++|+.+.++.+...++..+.+.++.|++||.|..|+||++|+|||++.|.+.+++.++
T Consensus 28 ~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg~~~~~~~a~~~l~ 107 (530)
T 3dh4_A 28 GASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWIS 107 (530)
T ss_dssp HHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCcHHHHHHHHHHHH
Confidence 46889999999999999999999999988777777788888888899999999999999999999999999998887765
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Q psy8232 82 -QMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSV 160 (249)
Q Consensus 82 -~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~ 160 (249)
..+.+++.|+++.+.+++.++|+|++.++++.++++++||.+||+|+++|||.+|+++|+++.+++.+.++.+.||.++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~ 187 (530)
T 3dh4_A 108 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDG 187 (530)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhh
Confidence 5667889999999999999999999999999999999999999999999999999999999998888888877765543
Q ss_pred HH---HHhhhcCccccccC--CC-CCC-CcchhHHHHH-HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHH
Q psy8232 161 VW---QRNAAYNRTTLLSW--NP-DPT-ERYSIWSALF-GSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDD 232 (249)
Q Consensus 161 ~~---~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~ 232 (249)
+. +++.++++ +.++. ++ ++. .....+...+ +.++.++..++.|||++||++++||+|++||+.++++.+..
T Consensus 188 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laaks~k~ar~~~~~~~~~~~ 266 (530)
T 3dh4_A 188 WFAGVSKMVDAAP-GHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKL 266 (530)
T ss_dssp HHHHHHHHHHHCG-GGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-hhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 32 23322222 11211 11 111 0111122233 33455677888899999999999999999999999999888
Q ss_pred HHHHHHHhhhhhhh
Q psy8232 233 NIDVIHVMIKYVVT 246 (249)
Q Consensus 233 ~~~~~~~~iG~~~~ 246 (249)
++.++.+++|+++.
T Consensus 267 ~~~~~~~~~Gl~a~ 280 (530)
T 3dh4_A 267 IVPFLVVLPGIAAY 280 (530)
T ss_dssp HGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888764
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=100.00 E-value=1.4e-37 Score=291.45 Aligned_cols=244 Identities=22% Similarity=0.310 Sum_probs=199.7
Q ss_pred ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHH
Q psy8232 2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTV 81 (249)
Q Consensus 2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l 81 (249)
+.|+.||++|+++++|.||.+|++|+...++.++..++.++.++++.|++||.|..|+||++|+||||+.|.+.+++.++
T Consensus 57 ~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~ 136 (593)
T 2xq2_A 57 GASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWIS 136 (593)
T ss_dssp HHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCchHHHHHHHHHH
Confidence 46889999999999999999999999988888888888888888999999999999999999999999999998888765
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Q psy8232 82 -QMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSV 160 (249)
Q Consensus 82 -~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~ 160 (249)
..+++++.|+++.+..++.++|+|++.++++.++++++||..||+|+++|||.+|+++++++.+++.+.++.+.||+++
T Consensus 137 ~~~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~ 216 (593)
T 2xq2_A 137 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDG 216 (593)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 6678999999999999999999999999999999999999999999999999999999999998888888888877665
Q ss_pred HHHH---hhhcCccccccC-CCCCCC---cchhHHHHHH-HHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHH
Q psy8232 161 VWQR---NAAYNRTTLLSW-NPDPTE---RYSIWSALFG-SAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDD 232 (249)
Q Consensus 161 ~~~~---~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~ 232 (249)
+.+. +.++.+ +.++. .++..+ ....|..+++ .++.++..++.||+++||++++||+|++||+.++++.+..
T Consensus 217 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~k~ar~~~~~~~~~~~ 295 (593)
T 2xq2_A 217 WFAGVSKMVDAAP-GHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLAL 295 (593)
T ss_dssp HHHHHHHHHHHCG-GGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCh-hhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCCHHHHHHHHHHHHHHHH
Confidence 5442 222211 11221 111111 1123444443 3455667788899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhh
Q psy8232 233 NIDVIHVMIKYVVT 246 (249)
Q Consensus 233 ~~~~~~~~iG~~~~ 246 (249)
++.++..++|+.+.
T Consensus 296 ~~~~~~~~~Gl~a~ 309 (593)
T 2xq2_A 296 IVPFLVVLPGIAAY 309 (593)
T ss_dssp THHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888898764
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.61 E-value=5.8e-07 Score=82.34 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=97.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh---cccccCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8232 26 GPQLWMFGVSCFFVIPIVGYIFV---PFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVT 102 (249)
Q Consensus 26 G~~~~~~~~g~~~~~~l~~~~~~---~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~ 102 (249)
|++..+..++..++.++...+.+ ..-.|.|.. .+++.|.+||++...+.+++..+..+.|.+.|....+..++.++
T Consensus 55 GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~-~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~ 133 (501)
T 2jln_A 55 SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN-FTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEIT 133 (501)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC-HHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-hhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666666555443332 333455555 88999999998888899999999999999999999999988876
Q ss_pred ----CCc-hHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy8232 103 ----GLN-TMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIG 156 (249)
Q Consensus 103 ----gi~-~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g 156 (249)
|++ .+.+.++..++.+..+ ..|+|.+.+.+.++..++++..+.+.+..+.+.|
T Consensus 134 ~~~~g~~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g 191 (501)
T 2jln_A 134 RLLTGFTNLPLWIVIFGAIQVVTT-FYGITFIRWMNVFASPVLLAMGVYMVYLMLDGAD 191 (501)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCcchHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887 4666666666555555 7799999999999999988877766666655443
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.18 E-value=0.0002 Score=63.72 Aligned_cols=217 Identities=11% Similarity=0.050 Sum_probs=117.2
Q ss_pred hhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCc-cCHHHHHHhhhChhHHHHHHHHHHHHHHHH
Q psy8232 8 NFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNF-TSAYQYFGERFSRNLQLLASTMFTVQMVLY 86 (249)
Q Consensus 8 t~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~-~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~ 86 (249)
+.+|++-+.. |+...+.|-..++..+-..+.....++.++..-+++.. -...+|.++.+||..+.+.++...+.....
T Consensus 22 ~~iG~Gif~~-~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~ 100 (445)
T 3l1l_A 22 AIMGSGVFLL-PANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIG 100 (445)
T ss_dssp HHCSSHHHHH-HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHhh-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHHHHHHHHHHHHHHHH
Confidence 3344444443 44455567655433333334444455566666666543 379999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHhCC-c-h--HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHH
Q psy8232 87 LALVLYAPAMALHQVTGL-N-T--MMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVW 162 (249)
Q Consensus 87 ~~~q~~~~~~~l~~~~gi-~-~--~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~~~ 162 (249)
.+.+..+.+..++..++. + + .....+...+...+....|.|.....+.+-..+.++.++++.+..+.+.. .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~---- 175 (445)
T 3l1l_A 101 NIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFR-G---- 175 (445)
T ss_dssp HHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-C----
T ss_pred HHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-h----
Confidence 777888877777766552 1 1 12233333445566667788888877766655555544433333322211 0
Q ss_pred HHhhhcCccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCH-HHHHHHHHHHhhHHHHHHHHHHh
Q psy8232 163 QRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSA-AKARQIDYDQMIMDDNIDVIHVM 240 (249)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~-k~ar~~~~~~~~~~~~~~~~~~~ 240 (249)
++ .. .+++++... ++.....+.........+.+ ...+-.-..||+ |+.+|+...+.....++..+..+
T Consensus 176 ----~~-~~--~~~~~~~~~--~~~~~~~~~~~~~~af~G~e-~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~ 244 (445)
T 3l1l_A 176 ----ET-YM--AAWNVSGLG--TFGAIQSTLNVTLWSFIGVE-SASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTT 244 (445)
T ss_dssp ----CC-CC--CC-------------HHHHHHHHHHTTTTTT-HHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hh-cc--cccCccCCc--cHHHHHHHHHHHHHHHHhHH-HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 00 00 011111100 11111112111112223332 333444567886 78899999888777766655443
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.39 E-value=0.038 Score=48.83 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=66.9
Q ss_pred HHHHHHhhhcccccCC-ccCHHHHHHhhhChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch--HH--HHHHH
Q psy8232 40 IPIVGYIFVPFFQKNN-FTSAYQYFGERFSRN-LQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNT--MM--VVSVM 113 (249)
Q Consensus 40 ~~l~~~~~~~~~rr~~-~~T~~e~l~~Ryg~~-~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~~--~~--~~~i~ 113 (249)
....++.++..-+++. .-...++.++.+|++ .....++...+......+.+..+.+..++..++.+. +. ...+.
T Consensus 52 ~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (444)
T 3gia_A 52 ALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIG 131 (444)
T ss_dssp HHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 3344455566555553 346889999999965 233335555566666778888888888888877432 22 22333
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8232 114 FLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILC 149 (249)
Q Consensus 114 ~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~ 149 (249)
..+...+....|.|.....+.+-..+.++.++++.+
T Consensus 132 ~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii 167 (444)
T 3gia_A 132 IVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIF 167 (444)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566668887777666655555554443333
No 6
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=95.27 E-value=1.7 Score=39.46 Aligned_cols=142 Identities=6% Similarity=0.004 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchH----HHHHHHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHh---
Q psy8232 80 TVQMVLYLALVLYAPAMALHQVTGLNTM----MVVSVMFLVCIFYTTIGGM-KAVVWTDSFQVVVLYFAMFAILCKG--- 151 (249)
Q Consensus 80 ~l~~~~~~~~q~~~~~~~l~~~~gi~~~----~~~~i~~~i~~~Yt~~GGl-~~v~~td~iQ~i~~~~~~~~~~~~~--- 151 (249)
+-..+...+.|+.+. ++.++|+|.. ..+++...++..++...|+ |++-+-.-++..+.+.-++.+.+..
T Consensus 209 ~atsLGlg~~qi~~G---l~~lfGi~~~~~~qi~ii~vit~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll~fvli~GpT~ 285 (509)
T 2wsw_A 209 MGTSLGLATPLVTEC---IQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQKGVKIASDVRTYLSFLMLGWVFIVGGAS 285 (509)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHH---HHHHcCCCCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 334555555565544 5667787632 2233333344455777788 7877666666555443322222211
Q ss_pred --hhc-cCCHHHHHHHhhhcCccccccCCCC-CCCcchhHHHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHH
Q psy8232 152 --TLD-IGGFSVVWQRNAAYNRTTLLSWNPD-PTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQ 227 (249)
Q Consensus 152 --~~~-~gg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~ 227 (249)
++. ..+..+-.++..+. .+ +.++. +.+-.+.|..+ .+..|+.....-..+.-|+--.|+-||.-.+.++.
T Consensus 286 fil~~~~~~~G~yl~nf~~m---s~-~~~~~~~~~w~~~WTiF--YWaWWisWaPfvG~FIARISrGRTIREfi~gvl~v 359 (509)
T 2wsw_A 286 FIVNYFTDSVGTLLMYMPRM---LF-YTDPIGKGGFPQAWTVF--YWAWWVIYAIQMSIFLARISKGRTVRELCLGMVSG 359 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HT-CCCTTTCCCHHHHTHHH--HHHHHHHTHHHHHHHHHHTTTTCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---hC-cCCCCCccChhhccHHH--HHHHHHHHHHHHHHHhheecCCcCHHHHHHHHHHH
Confidence 111 11233334444322 11 11111 11122445432 22223322211135789999999999988887665
Q ss_pred hhH
Q psy8232 228 MIM 230 (249)
Q Consensus 228 ~~~ 230 (249)
..+
T Consensus 360 Ps~ 362 (509)
T 2wsw_A 360 LTA 362 (509)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=93.78 E-value=3.5 Score=36.72 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=67.4
Q ss_pred hcchhHH-HHHHHHHHHHHHHHHhhhcccc--cCCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 24 KFGPQLW-MFGVSCFFVIPIVGYIFVPFFQ--KNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQ 100 (249)
Q Consensus 24 ~~G~~~~-~~~~g~~~~~~l~~~~~~~~~r--r~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~ 100 (249)
..|.... |+.++..+..+..++.++..-. ++..-...++.++-+|++.+.+.++...+......+......+..++.
T Consensus 37 ~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 116 (511)
T 4djk_A 37 TSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSY 116 (511)
T ss_dssp TTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC---CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455543 3333333333334455565555 555446788999999999999999888888888888888887777776
Q ss_pred HhC---Cc--h--HHHHHHHHHHHHHhhccccchhHHHHHHHH
Q psy8232 101 VTG---LN--T--MMVVSVMFLVCIFYTTIGGMKAVVWTDSFQ 136 (249)
Q Consensus 101 ~~g---i~--~--~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ 136 (249)
.++ .+ . .....+...+.....-+-|.|.....+.+=
T Consensus 117 ~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 159 (511)
T 4djk_A 117 ILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVG 159 (511)
T ss_dssp TTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHH
T ss_pred HhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 642 22 1 122233333344455556888776655443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=93.39 E-value=0.95 Score=41.28 Aligned_cols=175 Identities=12% Similarity=0.016 Sum_probs=78.6
Q ss_pred CHHHHHHhh--hCh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-h----HHHHHHHHHHHHHhhccc
Q psy8232 58 SAYQYFGER--FSR------NLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLN-T----MMVVSVMFLVCIFYTTIG 124 (249)
Q Consensus 58 T~~e~l~~R--yg~------~~~~~~a~~~~l~~~~~~~~q~~~~~~~l~~~~gi~-~----~~~~~i~~~i~~~Yt~~G 124 (249)
+..-++++| +|. ....++.+..+...+...+.|+.+. ++.++|+| . ...+++...++...+...
T Consensus 180 ~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~G---l~~lfGi~~~~~~~qi~ii~vit~i~~~Sa~s 256 (539)
T 4ain_A 180 AFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAG---LSAANIIEDPSDWTIVGIVSVLTLAFIFSAIS 256 (539)
T ss_dssp GGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHC--CCCSTTTTTHHHHHHHHHHHHHHHC
T ss_pred HhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 356678887 552 2223333333445566666666544 45677776 2 233444444455566677
Q ss_pred cc-hhHHHHHHHHHHHHHH---HHHHHHHH--hhhcc-CCHHHHHHHhhhcCccccccCCC--CC--CCcchhHHHHHHH
Q psy8232 125 GM-KAVVWTDSFQVVVLYF---AMFAILCK--GTLDI-GGFSVVWQRNAAYNRTTLLSWNP--DP--TERYSIWSALFGS 193 (249)
Q Consensus 125 Gl-~~v~~td~iQ~i~~~~---~~~~~~~~--~~~~~-gg~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~ 193 (249)
|+ |++-+-.-++..+.+. .++++..- .++.. .+..+..++..+. .+. .++ ++ .+-...|..+ .
T Consensus 257 Gl~kGIk~LS~~N~~La~~Ll~fvli~GPT~fil~~~~~s~G~yl~nf~~m---s~~-t~~~~~~~~~~W~~~WTiF--Y 330 (539)
T 4ain_A 257 GVGKGIQYLSNANMVLAALLAIFVFVVGPTVSILNLLPGSIGNYLSNFFQM---AGR-TAMSADGTAGEWLGSWTIF--Y 330 (539)
T ss_dssp ---CCHHHHGGGHCCCCCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH---HHC-CSSTTTTCCHHHHHHTHHH--H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH---hCc-CCcccCccccchhhcCHHH--H
Confidence 77 7776666666544322 22222111 11111 1233333343322 111 111 11 1112334332 2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy8232 194 AFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIK 242 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~~~~~~~iG 242 (249)
+..|+.....-..+.-|+--.|+-||.-.+.++...+.. +..+.++-|
T Consensus 331 WaWWiswaPfvG~FIARISrGRTIREfv~gvl~vPsl~~-~~WfsvfGg 378 (539)
T 4ain_A 331 WAWWISWSPFVGMFLARISRGRSIREFILGVLLVPAGVS-TVWFSIFGG 378 (539)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCBHHHHHHTTTHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCcCHHHHHHHHHHHHHHHH-HHHHHHhCH
Confidence 222322221123578999999999998887666444333 333344433
No 9
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=29.51 E-value=3.1e+02 Score=24.60 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=25.5
Q ss_pred HHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy8232 112 VMFLVCIFYTTIGGM-KAVVWTDSFQVVVLYFAMFAILCKGTLDIG 156 (249)
Q Consensus 112 i~~~i~~~Yt~~GGl-~~v~~td~iQ~i~~~~~~~~~~~~~~~~~g 156 (249)
....++...+...|. |++-...-+-....++.++++.+......|
T Consensus 173 ~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpG 218 (519)
T 2a65_A 173 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLET 218 (519)
T ss_dssp HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333444556677788 677666655555555555555555554443
No 10
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=25.64 E-value=32 Score=17.35 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=10.7
Q ss_pred HHHHhhhChhHHHH
Q psy8232 61 QYFGERFSRNLQLL 74 (249)
Q Consensus 61 e~l~~Ryg~~~~~~ 74 (249)
-+..+||||.+|..
T Consensus 5 ~~~A~rYGReLRRM 18 (27)
T 2bzw_B 5 LWAAQRYGRELRRM 18 (27)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH
Confidence 36788999887765
No 11
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=20.94 E-value=41 Score=15.85 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCHHHHH.....
Q psy8232 206 LQIQRYLTVDSAAKAR..... 221 (249)
Q Consensus 206 ~~~qr~~aak~~k~ar..... 221 (249)
|..-|++--||+|+.+
T Consensus 6 hqllrylldkdek~l~..... 21 (21)
T 3dct_B 6 HQLLRYLLDKDEKDLRxxxxx 26 (26)
T ss_pred HHHHHHHHccchhhcC.....
Confidence 5678899999998753
Done!