Query psy8232
Match_columns 249
No_of_seqs 118 out of 1041
Neff 8.7
Searched_HMMs 13730
Date Fri Aug 16 22:04:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8232.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8232hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 13.2 3.1E+02 0.023 22.0 19.1 23 7-29 16-38 (509)
2 d1j2jb_ a.7.8.1 (B:) ADP-ribos 12.2 93 0.0068 16.2 2.6 18 206-223 9-26 (41)
3 d1af7a1 a.58.1.1 (A:11-91) Che 10.8 31 0.0023 20.7 0.4 22 47-68 44-65 (81)
4 d1si2a_ b.34.14.1 (A:) Eukaryo 10.4 28 0.002 23.2 0.0 15 56-70 80-94 (126)
5 d1rc2a_ f.19.1.1 (A:) Aquapori 8.2 2.1E+02 0.015 20.3 4.5 54 29-94 36-92 (231)
6 d1a6ja_ d.112.1.1 (A:) Nitroge 7.6 2.4E+02 0.018 18.2 4.4 26 198-223 120-145 (150)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 6.1 4.5E+02 0.033 19.3 6.0 11 60-70 79-89 (447)
8 d1ppjc1 f.32.1.1 (C:261-379) M 5.4 3.6E+02 0.026 17.1 4.1 26 43-74 39-64 (119)
9 d1ymga1 f.19.1.1 (A:6-239) Aqu 5.3 2.6E+02 0.019 19.9 3.7 53 31-94 38-92 (234)
10 d1pv7a_ f.38.1.2 (A:) Lactose 4.9 3E+02 0.022 19.8 3.9 12 59-70 62-73 (417)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=13.22 E-value=3.1e+02 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=15.1
Q ss_pred ehhhhhhhhhccchhhhhcchhH
Q psy8232 7 LNFLSSITFIGQPAEVYKFGPQL 29 (249)
Q Consensus 7 at~~s~~t~~g~~g~~y~~G~~~ 29 (249)
+..++-+.+--.|-..|++|=.+
T Consensus 16 g~avGlGNiWrFPyl~~~nGGga 38 (509)
T d2a65a1 16 GNAVGLGNFLRFPVQAAENGGGA 38 (509)
T ss_dssp HHHSSHHHHTHHHHHHHHTTTHH
T ss_pred HHHhcccHHHhhhHHHHhcCCch
Confidence 34455566677788888886543
No 2
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.19 E-value=93 Score=16.16 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCHHHHHHH
Q psy8232 206 LQIQRYLTVDSAAKARQI 223 (249)
Q Consensus 206 ~~~qr~~aak~~k~ar~~ 223 (249)
...+|.+.+|++++.+.+
T Consensus 9 klL~~LLkS~~PeDLqaA 26 (41)
T d1j2jb_ 9 KMLARLLKSSHPEDLRAA 26 (41)
T ss_dssp HHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHH
Confidence 467999999999988754
No 3
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.80 E-value=31 Score=20.71 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=17.3
Q ss_pred hhcccccCCccCHHHHHHhhhC
Q psy8232 47 FVPFFQKNNFTSAYQYFGERFS 68 (249)
Q Consensus 47 ~~~~~rr~~~~T~~e~l~~Ryg 68 (249)
+.+++++.|+.|..||++.--.
T Consensus 44 L~~rm~~~g~~s~~~Y~~~L~~ 65 (81)
T d1af7a1 44 LVRRLRALGLDDFGRYLSMLEA 65 (81)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHh
Confidence 4677788899999999876543
No 4
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.36 E-value=28 Score=23.18 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.7
Q ss_pred ccCHHHHHHhhhChh
Q psy8232 56 FTSAYQYFGERFSRN 70 (249)
Q Consensus 56 ~~T~~e~l~~Ryg~~ 70 (249)
-.|+.||+.++|+..
T Consensus 80 ~iTV~~YFk~~Y~~~ 94 (126)
T d1si2a_ 80 ECTVAQYFKQKYNLQ 94 (126)
T ss_dssp EEEHHHHHHHTSCCC
T ss_pred EEEHHHHHHHHcCcc
Confidence 479999999999943
No 5
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=8.22 E-value=2.1e+02 Score=20.31 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc--CCccCHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 29 LWMFGVSCFFVIPIVGYIFVPFFQK--NNFTSAYQYFGERFS-RNLQLLASTMFTVQMVLYLALVLYAP 94 (249)
Q Consensus 29 ~~~~~~g~~~~~~l~~~~~~~~~rr--~~~~T~~e~l~~Ryg-~~~~~~~a~~~~l~~~~~~~~q~~~~ 94 (249)
.....+++.++..+..+.+++.=-- .-..|+..++.+|.. ++ .+.|+..|+.+.
T Consensus 36 ~~~ia~~~Gl~v~~~i~~~g~iSGaH~NPAVTla~~~~g~~~~~~------------~~~Yi~aQ~lGa 92 (231)
T d1rc2a_ 36 FAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKE------------VVGYVIAQVVGG 92 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTCSCTTT------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCccCCCchhHHHHhcCCCcHHH------------HHHHHHHHHHHH
Confidence 3344555555555544444444221 247899999998887 33 466777777654
No 6
>d1a6ja_ d.112.1.1 (A:) Nitrogen regulatory bacterial protein IIa-ntr {Escherichia coli [TaxId: 562]}
Probab=7.63 E-value=2.4e+02 Score=18.23 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=21.0
Q ss_pred HHHhcCChHHHHHHHhcCCHHHHHHH
Q psy8232 198 IVFYGGNQLQIQRYLTVDSAAKARQI 223 (249)
Q Consensus 198 ~~~~~~~~~~~qr~~aak~~k~ar~~ 223 (249)
+.....++...++...++|.++...-
T Consensus 120 l~~~l~d~~~~~~L~~a~~~~ei~~i 145 (150)
T d1a6ja_ 120 VAKRLADKTICRRLRAAQSDEELYQI 145 (150)
T ss_dssp HHHHHTCHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHCCHHHHHHHHhCcCHHHHHHH
Confidence 33445689999999999999998764
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.11 E-value=4.5e+02 Score=19.26 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=7.5
Q ss_pred HHHHHhhhChh
Q psy8232 60 YQYFGERFSRN 70 (249)
Q Consensus 60 ~e~l~~Ryg~~ 70 (249)
...+.|||||+
T Consensus 79 ~G~l~Dr~g~r 89 (447)
T d1pw4a_ 79 MGSVSDRSNPR 89 (447)
T ss_dssp HHHHHHHSCHH
T ss_pred HHHHHHHcCch
Confidence 35668899843
No 8
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.42 E-value=3.6e+02 Score=17.12 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=16.0
Q ss_pred HHHhhhcccccCCccCHHHHHHhhhChhHHHH
Q psy8232 43 VGYIFVPFFQKNNFTSAYQYFGERFSRNLQLL 74 (249)
Q Consensus 43 ~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~ 74 (249)
..+++.|+.+|.+..|. ||+...+..
T Consensus 39 ~il~~lP~l~~~~~~s~------~~~~~~~~~ 64 (119)
T d1ppjc1 39 LILALIPLLHTSKQRSM------MFRPLSQCL 64 (119)
T ss_dssp HGGGTHHHHCCCSSSSS------TTCHHHHHH
T ss_pred HHHHHHHHHhcccCCCC------eeChHHHHH
Confidence 33556798888777663 666444443
No 9
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.28 E-value=2.6e+02 Score=19.89 Aligned_cols=53 Identities=9% Similarity=0.045 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccc--CCccCHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8232 31 MFGVSCFFVIPIVGYIFVPFFQK--NNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAP 94 (249)
Q Consensus 31 ~~~~g~~~~~~l~~~~~~~~~rr--~~~~T~~e~l~~Ryg~~~~~~~a~~~~l~~~~~~~~q~~~~ 94 (249)
...+++.++.....+.+.+.=.- .-..|+.-++.+|.+.+ -.++|+..|+.+.
T Consensus 38 ~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~-----------~~~~Yi~aQ~lGa 92 (234)
T d1ymga1 38 QVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLL-----------RAICYMVAQLLGA 92 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCChh-----------heeeeeehHHHHH
Confidence 44555555555444444443222 34789999999888822 2566777777663
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.88 E-value=3e+02 Score=19.75 Aligned_cols=12 Identities=0% Similarity=0.312 Sum_probs=8.2
Q ss_pred HHHHHHhhhChh
Q psy8232 59 AYQYFGERFSRN 70 (249)
Q Consensus 59 ~~e~l~~Ryg~~ 70 (249)
+...+.|||||+
T Consensus 62 ~~G~l~Dr~grr 73 (417)
T d1pv7a_ 62 LFGLLSDKLGLR 73 (417)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhCch
Confidence 345678899944
Done!