RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8232
(249 letters)
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 161 bits (408), Expect = 3e-46
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 8/224 (3%)
Query: 6 ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGE 65
I +S+ FIG Y G + + + IVG F+P F + + ++ +
Sbjct: 61 IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEK 120
Query: 66 RFSRNLQLLASTMFTV-QMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIG 124
RF++ L+ + + + + + L VLY +AL + G+ M + + L + Y+ G
Sbjct: 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 180
Query: 125 GMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGG-------FSVVWQRNAAYNRTTLLSWN 177
G+ AVVWTD QV L F IGG S + + L N
Sbjct: 181 GLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSN 240
Query: 178 PDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKAR 221
P I + G ++ ++G NQ IQR L S ++A+
Sbjct: 241 PQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQ 284
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 159 bits (405), Expect = 4e-46
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 8/224 (3%)
Query: 6 ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGE 65
I +S+ FIG Y G + + + IVG F+P F + + ++ +
Sbjct: 32 IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEK 91
Query: 66 RFSRNLQLLASTMFTV-QMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIG 124
RF++ L+ + + + + + L VLY +AL + G+ M + + L + Y+ G
Sbjct: 92 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 151
Query: 125 GMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGG-------FSVVWQRNAAYNRTTLLSWN 177
G+ AVVWTD QV L F IGG S + + L N
Sbjct: 152 GLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSN 211
Query: 178 PDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKAR 221
P I + G ++ ++G NQ IQR L S ++A+
Sbjct: 212 PQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQ 255
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.016
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 18/42 (42%)
Query: 65 ERFSRNLQLLASTMFTVQMVLYLALVLYA----PAMALHQVT 102
E+ + L+ L ++ L LYA PA+A+ + T
Sbjct: 18 EK--QALKKLQAS-----------LKLYADDSAPALAI-KAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.48
Identities = 37/252 (14%), Positives = 76/252 (30%), Gaps = 80/252 (31%)
Query: 21 EVYKFGP---QLW---------MFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFS 68
++YK +W +G S ++ IV NN + +FG
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFS---ILDIV---------INNPVNLTIHFGGEKG 1681
Query: 69 RNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKA 128
+ ++ Y A++ ++ ++ F + G + A
Sbjct: 1682 KRIR-----------ENYSAMIFETIVDG--KLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 129 VVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERY---- 184
T Q A+ + AA+ L S P +
Sbjct: 1729 ---TQFTQP-----ALTLM-----------EK-----AAFED--LKSKGLIPADATFAGH 1762
Query: 185 SI--WSAL--------FGSAFLHIVFYGGNQLQ--IQRYLTVDSAAKARQIDYDQMIMDD 232
S+ ++AL S + +VFY G +Q + R S I+ ++
Sbjct: 1763 SLGEYAALASLADVMSIESL-VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 233 NIDVIHVMIKYV 244
+ + + +++ V
Sbjct: 1822 SQEALQYVVERV 1833
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80;
transcription, galactose metabolism, repressor; 2.10A
{Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB:
3e1k_A
Length = 479
Score = 28.9 bits (64), Expect = 1.8
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 224 DYDQMIMDDNIDVIHV 239
+ +ID+I V
Sbjct: 99 SLESFAQYKDIDMIVV 114
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 28.3 bits (63), Expect = 2.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 216 SAAKARQIDYDQMIMDDNIDVIHV 239
S + RQI + + IDV ++
Sbjct: 48 SLDEVRQISLEDALRSQEIDVAYI 71
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 28.2 bits (63), Expect = 2.6
Identities = 4/16 (25%), Positives = 11/16 (68%)
Query: 224 DYDQMIMDDNIDVIHV 239
++D++ D ID +++
Sbjct: 141 NFDKIAKDPKIDAVYI 156
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 27.7 bits (62), Expect = 3.5
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 164 RNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQ-IQRY 211
+ R + N + ++ + + + + + LQ I++Y
Sbjct: 174 QFLYECRVLIHRLNVSKSRKHELLTEIIDDQYRLSLVKQREFLQQIEKY 222
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic
transcription repressor, acetylation, carbohydrate
metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A
3v2u_A* 3btu_A
Length = 438
Score = 27.6 bits (61), Expect = 3.8
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 224 DYDQMIMDDNIDVIHV 239
+ ID+I +
Sbjct: 80 TLESFASSSTIDMIVI 95
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 27.7 bits (62), Expect = 4.0
Identities = 0/16 (0%), Positives = 10/16 (62%)
Query: 224 DYDQMIMDDNIDVIHV 239
+ ++ ++++++ +
Sbjct: 57 TMEALLAREDVEMVII 72
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 27.7 bits (62), Expect = 4.2
Identities = 2/16 (12%), Positives = 7/16 (43%)
Query: 224 DYDQMIMDDNIDVIHV 239
M+ + D++ +
Sbjct: 66 SLTDMLAQTDADIVIL 81
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI;
HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3
d.81.1.5
Length = 340
Score = 27.6 bits (62), Expect = 4.4
Identities = 3/35 (8%), Positives = 13/35 (37%), Gaps = 11/35 (31%)
Query: 216 SAAKARQI-----------DYDQMIMDDNIDVIHV 239
+ + A + Y++++ +D + +
Sbjct: 54 TRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDL 88
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 27.4 bits (61), Expect = 5.1
Identities = 2/16 (12%), Positives = 8/16 (50%)
Query: 224 DYDQMIMDDNIDVIHV 239
+M+ +D +++
Sbjct: 55 TLAEMMQHVQMDAVYI 70
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Length = 393
Score = 27.4 bits (61), Expect = 5.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 224 DYDQMIMDDNIDVIHV 239
D+ +I D +DV+ V
Sbjct: 85 DWRALIADPEVDVVSV 100
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 27.3 bits (61), Expect = 5.5
Identities = 2/16 (12%), Positives = 10/16 (62%)
Query: 224 DYDQMIMDDNIDVIHV 239
++ +M+ + D++ +
Sbjct: 58 NWWEMLEKEKPDILVI 73
>2jln_A MHP1; hydantoin, transporter, membrane protein,
nucleobase-cation-symport-1 family; 2.85A
{Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Length = 501
Score = 27.0 bits (60), Expect = 5.9
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 95 AMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAIL 148
+TG + + V+F TT G+ + W + F VL ++
Sbjct: 130 DEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMV 183
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD
motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15
PDB: 1omx_A* 1on6_A* 1on8_A*
Length = 293
Score = 27.0 bits (59), Expect = 6.5
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 159 SVVWQRNA--AYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVF 200
V + +Y L + P ++YS+ L G++F + +
Sbjct: 145 KHVSTSSGIYSYGGFELQTPGPGNGDQYSMV--LIGASFFNSKY 186
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 27.0 bits (60), Expect = 6.6
Identities = 2/16 (12%), Positives = 7/16 (43%)
Query: 224 DYDQMIMDDNIDVIHV 239
+ M+ +D + +
Sbjct: 59 NVPAMLNQVPLDAVVM 74
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 27.0 bits (60), Expect = 6.8
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 224 DYDQMIMDDNIDVIHV 239
+Q+I D +ID+I
Sbjct: 57 SAEQLITDASIDLIAC 72
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 26.6 bits (59), Expect = 8.2
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 224 DYDQMIMDDNIDVIHV 239
Y+ ++ D ID ++V
Sbjct: 62 SYESLLEDPEIDALYV 77
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 26.7 bits (59), Expect = 8.6
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 224 DYDQMIMDDNIDVIHV 239
++++ D+NI +I
Sbjct: 79 TAEEILEDENIGLIVS 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.141 0.439
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,870,855
Number of extensions: 223025
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 33
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.4 bits)