RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8232
         (249 letters)



>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 91

 Score = 26.8 bits (59), Expect = 0.82
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 218 AKARQIDYDQMIMDDNIDVIHVMIKYVVTT 247
           A A QI   QMI D N       +K ++  
Sbjct: 13  ATAEQIRLAQMISDHNDADFEEKVKQLIDI 42


>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and
           3 {Salmonella typhimurium [TaxId: 90371]}
          Length = 102

 Score = 26.4 bits (58), Expect = 1.3
 Identities = 8/51 (15%), Positives = 13/51 (25%)

Query: 162 WQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYL 212
             R A   R  +        ER   W   F +  L       ++  +    
Sbjct: 41  VARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATT 91


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 25.5 bits (55), Expect = 7.6
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 71 LQLLASTMFTVQMVLYLALVLYA 93
          + LL+S  +T + + YL + +  
Sbjct: 72 VNLLSSNRYTEKQIGYLFISVLV 94


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 25.5 bits (55), Expect = 8.7
 Identities = 5/24 (20%), Positives = 13/24 (54%)

Query: 71 LQLLASTMFTVQMVLYLALVLYAP 94
          +  + +    ++ ++YL L+ YA 
Sbjct: 52 VNCMQTDNLELKKLVYLYLMNYAK 75


>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC
           {Bacillus subtilis [TaxId: 1423]}
          Length = 319

 Score = 24.9 bits (53), Expect = 9.7
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 90  VLYAPAMALHQVTGLNTMMVVSVMFLV 116
           +LY P    H        + +++ F  
Sbjct: 208 MLYLPRGLWHSTKSDQATLALNITFGQ 234


>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score = 24.4 bits (53), Expect = 9.9
 Identities = 4/30 (13%), Positives = 9/30 (30%)

Query: 50  FFQKNNFTSAYQYFGERFSRNLQLLASTMF 79
               +N     +    +F  N   +A  + 
Sbjct: 78  LLLIHNLKRIRKVLQGKFHGNPMHVAVVIS 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 938,385
Number of extensions: 41498
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 18
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.5 bits)