BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy824
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/390 (40%), Positives = 239/390 (61%), Gaps = 34/390 (8%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
VV AEA+WDHV M+ +ELGF+AGDVIEV+D +R+WWWG + GWFP++FVRLRV+Q+
Sbjct: 30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQD 89
Query: 199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
+ +D + G++ + + S DQ+R+ V+ E+++TERD++K L D+ EGY+
Sbjct: 90 EPADDDAPLAGNSGAED---GGAEAQSSKDQMRTNVINEILSTERDYIKHLRDICEGYVR 146
Query: 259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
+CR+R DMFS EQ++TIFGN+EDI Q +F++ LE + + + P+ S +G FL+H++ F
Sbjct: 147 QCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADF 206
Query: 319 ---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
HP+ V + K+ K + CR L+ + +L
Sbjct: 207 QIYSEYCNNHPNACVELSRLTKL---SKYVYFFEACRLLQKMI--------DISL----- 250
Query: 370 EDGLEFAPAAK--ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME 427
DG P K + A + P H D+ + AL AM++VA LINERKRR+E
Sbjct: 251 -DGFLLTPVQKICKYPLQLAELLKYTHP--QHRDFKDVEAALHAMKNVAQLINERKRRLE 307
Query: 428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKR 486
+++K+A WQ +E WEGEDL+ SS+LI+ GE+ RVT + FLFDHQL+YCK+
Sbjct: 308 NIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKK 367
Query: 487 DILKRNTHVYKARLNIDTSQIINLPDGKGR 516
D+L+R+ YK RL++D ++++L DGK R
Sbjct: 368 DLLRRDVLYYKGRLDMDGLEVVDLEDGKDR 397
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
VV AEA+WDHV M+ +ELGF+AGDVIEV+D +R+WWWG
Sbjct: 30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWG 68
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 322 LGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKE 381
L V++++A ++H L C R E K RWL AF +ER V+ D+E G ++
Sbjct: 399 LHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQRK 458
Query: 382 LARMSAAR 389
A ++A++
Sbjct: 459 QAMLNASK 466
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/390 (40%), Positives = 233/390 (59%), Gaps = 34/390 (8%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
VV AEA+WDHV + +ELGF+AGDVIEV D +R+WWWG + GWFP++FVRLRV+Q+
Sbjct: 67 VVCAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRLRVNQD 126
Query: 199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
+ +D + G++ + + S DQ R+ V+ E+++TERD++K L D+ EGY+
Sbjct: 127 EPADDDAPLAGNSGAED---GGAEAQSSKDQXRTNVINEILSTERDYIKHLRDICEGYVR 183
Query: 259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
+CR+R D FS EQ++TIFGN+EDI Q +F++ LE + + + P+ S +G FL+H++ F
Sbjct: 184 QCRKRADXFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADF 243
Query: 319 ---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
HP+ V + K+ K + CR L+ + +L
Sbjct: 244 QIYSEYCNNHPNACVELSRLTKL---SKYVYFFEACRLLQKXI--------DISL----- 287
Query: 370 EDGLEFAPAAK--ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME 427
DG P K + A + P H D+ + AL A ++VA LINERKRR+E
Sbjct: 288 -DGFLLTPVQKICKYPLQLAELLKYTHPQ--HRDFKDVEAALHAXKNVAQLINERKRRLE 344
Query: 428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKR 486
+++K+A WQ +E WEGEDL+ SS+LI+ GE+ RVT + FLFDHQL+YCK+
Sbjct: 345 NIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRXFFLFDHQLIYCKK 404
Query: 487 DILKRNTHVYKARLNIDTSQIINLPDGKGR 516
D+L+R+ YK RL+ D ++++L DGK R
Sbjct: 405 DLLRRDVLYYKGRLDXDGLEVVDLEDGKDR 434
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 32/39 (82%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
VV AEA+WDHV + +ELGF+AGDVIEV D +R+WWWG
Sbjct: 67 VVCAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWG 105
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 322 LGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQD 368
L V++++A ++H L C R E K RWL AF +ER V+ D
Sbjct: 436 LHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLD 482
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 192/335 (57%), Gaps = 35/335 (10%)
Query: 195 VSQEDTVEDCLAALASGGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDV 252
V+QED VE+ + + +G + L + DQ+R+ V+ E+++TER ++K L D+
Sbjct: 4 VNQEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDI 63
Query: 253 SEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFL 312
EGYL +CR+R DMFS EQ++ IFGN+EDI FQ F+ DLE + + D P+ S IG FL
Sbjct: 64 CEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFL 123
Query: 313 KHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE-- 370
+H+ GF + +C++ + + ++D +R+ F+ R L++Q +
Sbjct: 124 EHQDGFWIY---------SEYCNNHLDACMELSKLMKD-SRYQHFFEACR-LLQQMIDIA 172
Query: 371 -DGLEFAPAAK---------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLIN 420
DG P K EL + +A DH DY + AL MR+V IN
Sbjct: 173 IDGFLLTPVQKICKYPLQLAELLKYTA---------QDHSDYRYVAAALAVMRNVTQQIN 223
Query: 421 ERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDH 479
ERKRR+E+++K+A WQ V WEG+D+++ SS+LI+ GE+ + N FLFDH
Sbjct: 224 ERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDH 283
Query: 480 QLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
Q+V CK+D+++R+ YK R+++D ++I++ DG+
Sbjct: 284 QMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 318
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 322 LGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKE 381
V++++A K+H + ++ LF + LE+K RWL AF++ER +V++D + G E + K
Sbjct: 322 FNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQKR 381
Query: 382 LARMSAARCHSSR 394
A M+ + +
Sbjct: 382 QAAMTVRKASKQK 394
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 53/65 (81%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
VV AEA+WDHV M+ +ELGF+AGDVIEV+D +R+WWWG + GWFP++FVRLRV+Q+
Sbjct: 36 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQD 95
Query: 199 DTVED 203
+ +D
Sbjct: 96 EPADD 100
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
VV AEA+WDHV M+ +ELGF+AGDVIEV+D +R+WWWG
Sbjct: 36 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWG 74
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
+V AEAVWDHV M EL F+AGDVI+VLD ++DWWWG + GWFP++FVRL V+QE
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 69
Query: 199 DTVED 203
D VE+
Sbjct: 70 DEVEE 74
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+V AEAVWDHV M EL F+AGDVI+VLD ++DWWWG
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWG 48
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 122/317 (38%), Gaps = 73/317 (23%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
++D+ A +EL F G +I VL+ D DWW G G FPS +V+L + + +
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQW 66
Query: 204 CL-AALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR 262
C L + T R+R + ELI TE ++V L V+E + +
Sbjct: 67 CSDLHLLDMLTPTERKRQG------------YIHELIVTEENYVNDLQLVTEIF-QKPLT 113
Query: 263 RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFHP 320
+++ + +++ IF N ++++ L+ L K+ + IG+ S P
Sbjct: 114 ESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDIL----SAQLP 169
Query: 321 HLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAK 380
H+ +R FC L AL++Q ++ +F K
Sbjct: 170 HMQPYIR---------------FCSCQLNGA-----------ALIQQKTDEAPDFKEFVK 203
Query: 381 ELARMSAARCHSS-------RP------------------PTDHPDYVKITEALEAMRDV 415
LA RC +P P +HPD+ + ALE ++
Sbjct: 204 RLAM--DPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEEL 261
Query: 416 AMLINERKRRMESLEKL 432
+NE R E+ ++L
Sbjct: 262 CSQVNEGVREKENSDRL 278
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
++D+ A +EL F G +I VL+ D DWW G
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG 40
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 131/295 (44%), Gaps = 33/295 (11%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
R +RE+ TE + L + + ++ +R P+ ++TIF N+E++ + + FL
Sbjct: 26 RCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFL 82
Query: 291 EDLETKLDWDAPYKSCIGETFLKHKSGF------HPHLGVTVRHAIKIHCSDKDKWL-LF 343
++L+ L P + + + F+K+K F + +H ++ + +D + L
Sbjct: 83 KELKDAL--AGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLE 140
Query: 344 CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYV 403
C + R+ R L+ + L++ +EL + + D +
Sbjct: 141 ECSQRANNGRFTL-----RDLLMVPMQRVLKYHLLLQELVKHTQ----------DATEKE 185
Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463
+ AL+AMRD+A +NE KR E+L ++ +Q +E + ++ + ++ V
Sbjct: 186 NLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGRPKIDGELKITSV 245
Query: 464 TSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD 518
T+ FL D L+ CKR + +++ KA +N+ + Q+ + D G D
Sbjct: 246 ERRSKTDRYA-FLLDKALLICKR---RGDSYDLKASVNLHSFQVRD--DSSGERD 294
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 144/333 (43%), Gaps = 51/333 (15%)
Query: 195 VSQEDTVEDCLAALASGGSKT---LRRRTSISL---LSNDQVRSRVVRELINTERDFVKV 248
V +++ + DC+ + G + L R +S+ ++ R +RE+ TE +
Sbjct: 156 VEEDEDLYDCVENEEAEGDEIYEDLMRSEPVSMPPKMTEYDKRCCCLREIQQTEEKYTDT 215
Query: 249 LHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIG 308
L + + +L +R P+ I+ IF N+ED+L + FL++++ L P + +
Sbjct: 216 LGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEMKEAL--GTPGAANLY 270
Query: 309 ETFLKHKSGFHPH------LGVTVRHAIKIHCSDKDKWL-LFCCRSLEDKARWLAAFQQE 361
+ F+K+K F + + +H ++ + +D + L C + R+
Sbjct: 271 QVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTL----- 325
Query: 362 RALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINE 421
R L+ + L++ +EL + + + AL+AMRD+A +NE
Sbjct: 326 RDLLMVPMQRVLKYHLLLQELVKHTQEAMEKE----------NLRLALDAMRDLAQCVNE 375
Query: 422 RKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV-----IRVTSGMWTNTI--TL 474
KR E+L ++ +Q +E + L H G +++TS + +
Sbjct: 376 VKRDNETLRQITNFQLSIENLD--------QSLAHYGRPKIDGELKITSVERRSKMDRYA 427
Query: 475 FLFDHQLVYCKRDILKRNTHVYKARLNIDTSQI 507
FL D L+ CKR + +++ K +N+ + Q+
Sbjct: 428 FLLDKALLICKR---RGDSYDLKDFVNLHSFQV 457
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 116/315 (36%), Gaps = 69/315 (21%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
A++D+ A +EL F G +I V++ D DWW G +G FPS +V++ + + +
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPSQQW 82
Query: 204 CLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRR 263
C + + R+ R + ELI TE ++ L V E + + R
Sbjct: 83 CADLQTLDTMQPIERK-----------RQGYIHELIQTEERYMADLQLVVEVF--QKRMA 129
Query: 264 NDMFSPE-QIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHL 322
F E ++ IF N ++++ + L+ L ++ K+G
Sbjct: 130 ESGFLTEGEMALIFVNWKELIMSNTKLLKALR-----------------VRKKTGGEKMP 172
Query: 323 GVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKEL 382
+ + S ++ FC L AL++Q ++ +F K+L
Sbjct: 173 VQMIGDILAAELSHMQAYIRFCSCQLNGA-----------ALLQQKTDEDTDFKEFLKKL 221
Query: 383 ARMSAARCHS-------------------------SRPPTDHPDYVKITEALEAMRDVAM 417
A S RC P H D+ + ALE ++
Sbjct: 222 A--SDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCS 279
Query: 418 LINERKRRMESLEKL 432
+NE R E+ ++L
Sbjct: 280 QVNEGVREKENSDRL 294
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D+ A +EL F G +I V++ D DWW G
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG 56
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 42/270 (15%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
R +RE+ TE + L + + +L +R P+ I+ IF N+ED+L + FL
Sbjct: 7 RCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFL 63
Query: 291 EDLETKLDWDAPYKSCIGETFLKHKSGFHPH------LGVTVRHAIKIHCSDKDKWL-LF 343
++++ L P + + + F+K+K F + + +H ++ + +D + L
Sbjct: 64 KEMKEAL--GTPGAANLYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLE 121
Query: 344 CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYV 403
C + R+ R L+ + L++ +EL + + + +
Sbjct: 122 ECSQRANNGRFTL-----RDLLMVPMQRVLKYHLLLQELVKHT----------QEAMEKE 166
Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV--- 460
+ AL+AMRD+A +NE KR E+L ++ +Q +E + L H G
Sbjct: 167 NLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLD--------QSLAHYGRPKID 218
Query: 461 --IRVTSGMWTNTI--TLFLFDHQLVYCKR 486
+++TS + + FL D L+ CKR
Sbjct: 219 GELKITSVERRSKMDRYAFLLDKALLICKR 248
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
AEA++D EL F+AGDVI +L +++DW GT
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT 213
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 8 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A++D A+E +ELGFR+G+V+EVLD+ + WW G
Sbjct: 8 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG 43
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RG 47
AEA++D EL F+AGDVI +L +++DW GT RG
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG 46
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A++D A+E +ELGFR+G+V+EVLD+ + WW G
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG 39
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A++D A+E +ELGFR+G+V+EVLD+ + WW G
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG 41
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
MD AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 13 MDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
MD AEA++D EL F+AGDVI +L +++DW GT
Sbjct: 13 MDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT 57
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A++D A+E +ELGFR+G+V+EVLD+ + WW G
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG 40
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A++D A E EL F+AG++I VLD D +WW G + G FPS FV
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D A E EL F+AG++I VLD D +WW G
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKG 55
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
A++D A+E EL F+ G++I VLD D +WW G +G FPS FV +S
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLS 62
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D A+E EL F+ G++I VLD D +WW G
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQG 43
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
A++D A+E EL F+ G++I VLD D +WW G G FPS FV ++ E
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE--- 78
Query: 204 CLAALASGGS 213
AA SG S
Sbjct: 79 --AAAVSGPS 86
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D A+E EL F+ G++I VLD D +WW G
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKG 55
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A++D+ A +EL F G +I V++ D DWW G +G FPS +V++
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D+ A +EL F G +I V++ D DWW G
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG 72
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+A++D E ELGFR GD I V+D D +WW G
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 40
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+A++D E ELGFR GD I V+D D +WW G
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 40
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+A++D E ELGFR GD I V+D D +WW G
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 40
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 159 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++D E ELGFR GD I V+D D +WW G
Sbjct: 159 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA 197
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGTRGEASGWFPSAFVRLR 194
A A +D A +EL F+ GD+++VL+ D++W+ G+ P ++ ++
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+A++D E ELGFR GD I V+D D +WW G
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 38
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 132 LGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
LG + D + A A++D+ A +E+ F D+I ++ +D WW G G FP+ +V
Sbjct: 3 LGSENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62
Query: 192 RLR 194
LR
Sbjct: 63 ELR 65
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ D + A A++D+ A +E+ F D+I ++ +D WW G
Sbjct: 6 ENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRG 48
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
M+ FV +A++D E+ EL F+ GDVI +++ D +WW G G FPS +V
Sbjct: 2 METKFV---QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
M+ FV +A++D E+ EL F+ GDVI +++ D +WW G
Sbjct: 2 METKFV---QALFDFNPQESGELAFKRGDVITLINKDDPNWWEG 42
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 21 DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
A++ V E E+L R GD+I +L+ + DWW G + G+FP+ FV+
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++ V E E+L R GD+I +L+ + DWW G
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKG 45
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 19 DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 21 DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 287
D++R +V+ EL+ TER +VK L+ + E YL ++ + +++ +FGNL + + FQ
Sbjct: 10 DKLR-KVICELLETERTYVKDLNCLXERYLKPLQKET-FLTQDELDVLFGNLTEXVEFQV 67
Query: 288 SFLEDLE 294
FL+ LE
Sbjct: 68 EFLKTLE 74
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+A++D E+ EL F+ GDVI +++ D +WW G G FPS +V
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+A++D E+ EL F+ GDVI +++ D +WW G
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEG 40
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+A++D E+ EL F+ GDVI +++ D +WW G G FPS +V
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 35.0 bits (79), Expect = 0.093, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+A++D E+ EL F+ GDVI +++ D +WW G
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEG 40
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195
+A++D ELGFR GD+I + + +D +W+ G SG+FP ++V++ V
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVLV 69
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+A++D ELGFR GD+I + + +D +W+ G
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEG 51
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 23 DELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVR 61
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 34/262 (12%)
Query: 225 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 279
L QV R V+ EL+ TE V+ VLHD+ +AEC +F P E++Q IF +L
Sbjct: 21 LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 75
Query: 280 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK 339
++++ S FL+ L + IG+ L G G + CS +
Sbjct: 76 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE---GSWFQKISSRFCSRQS- 131
Query: 340 WLLFCCRSLEDKARW---LAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRP 395
F L+ K R AF QE + R L + P + S
Sbjct: 132 ---FALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQ 188
Query: 396 PTDHP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWE 443
T+ P + K+ A E R++ +N+ R ME L +L +Q+R++ E
Sbjct: 189 NTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSE 248
Query: 444 GEDLIETSSQLIHQGEVI-RVT 464
++L T +L+H+G + RVT
Sbjct: 249 FKNLDITKKKLVHEGPLTWRVT 270
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 34/262 (12%)
Query: 225 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 279
L QV R V+ EL+ TE V+ VLHD+ +AEC +F P E++Q IF +L
Sbjct: 19 LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 73
Query: 280 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK 339
++++ S FL+ L + IG+ L G G + CS +
Sbjct: 74 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE---GSWFQKISSRFCSRQS- 129
Query: 340 WLLFCCRSLEDKARW---LAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRP 395
F L+ K R AF QE + R L + P + S
Sbjct: 130 ---FALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQ 186
Query: 396 PTDHP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWE 443
T+ P + K+ A E R++ +N+ R ME L +L +Q+R++ E
Sbjct: 187 NTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSE 246
Query: 444 GEDLIETSSQLIHQGEVI-RVT 464
++L T +L+H+G + RVT
Sbjct: 247 FKNLDITKKKLVHEGPLTWRVT 268
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 27/201 (13%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
R +RE+ TE + L + + ++ +R P+ ++TIF N+E++ + + FL
Sbjct: 28 RCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFL 84
Query: 291 EDLETKLDWDAPYKSCIGETFLKHKSGFHPH------LGVTVRHAIKIHCSDKDKWL-LF 343
++L+ L P + + + F+K+K F + + +H ++ + +D + L
Sbjct: 85 KELKDAL--AGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLE 142
Query: 344 CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYV 403
C + R+ R L+ + L++ +EL + + D +
Sbjct: 143 ECSQRANNGRFTL-----RDLLMVPMQRVLKYHLLLQELVKHTQ----------DATEKE 187
Query: 404 KITEALEAMRDVAMLINERKR 424
+ AL+AMRD+A +NE KR
Sbjct: 188 NLRLALDAMRDLAQCVNEVKR 208
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194
+ D + A A++D+ A +E+ F D+I ++ +D WW G G FP+ +V LR
Sbjct: 13 ENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 72
Query: 195 VS 196
S
Sbjct: 73 QS 74
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ D + A A++D+ A +E+ F D+I ++ +D WW G
Sbjct: 13 ENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRG 55
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW---------GTRGEASGWFPSAFV 191
A++D+ A AE+L FRAGD ++VLDT WW G + G+ PS +V
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D+ A AE+L FRAGD ++VLDT WW
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWW 43
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 27/260 (10%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGN 278
SL + R V+ EL+ TE V+ VLHD+ +AEC +F P E++Q IF +
Sbjct: 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPS 227
Query: 279 LEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKD 338
L++++ S FL+ L + IG+ L G G + CS +
Sbjct: 228 LDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE---GSWFQKISSRFCS-RQ 283
Query: 339 KWLLFCCRSLEDKARWLAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRPPT 397
+ L ++ + K AF QE + R L + P + S T
Sbjct: 284 SFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT 343
Query: 398 DHP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWEGE 445
+ P + K+ A E R++ +N+ R ME L +L +Q+R++ E +
Sbjct: 344 EEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFK 403
Query: 446 DLIETSSQLIHQGEVI-RVT 464
+L T +L+H+G + RVT
Sbjct: 404 NLDITKKKLVHEGPLTWRVT 423
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
E+FV +A D+ A + +L F G+ I +L DWWWG R G+ P+ V
Sbjct: 8 EEFVAIA----DYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
E+FV +A D+ A + +L F G+ I +L DWWWG R
Sbjct: 8 EEFVAIA----DYAATDETQLSFLRGEKILILRQTTADWWWGERA 48
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 28/259 (10%)
Query: 225 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 279
L QV R V+ EL+ TE V+ VLHD+ +AEC +F P E++Q IF +L
Sbjct: 61 LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 115
Query: 280 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK 339
++++ S FL+ L + IG+ L G G + CS +
Sbjct: 116 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE---GSWFQKISSRFCS-RQS 171
Query: 340 WLLFCCRSLEDKARWLAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRPPTD 398
+ L ++ + K AF QE + R L + P + S T+
Sbjct: 172 FALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE 231
Query: 399 HP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWEGED 446
P + K+ A E R++ +N+ R ME L +L +Q+R++ E ++
Sbjct: 232 EPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKN 291
Query: 447 LIETSSQLIHQGEVI-RVT 464
L T +L+H+G + RVT
Sbjct: 292 LDITKKKLVHEGPLTWRVT 310
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
A+A +D A + EL + GD+I++L+ + WW RGE GWFPS +V
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWW--RGEIYGRIGWFPSNYV 58
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAF 50
A+A +D A + EL + GD+I++L+ + WW RGE +
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWW--RGEIY 47
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ ++D+ +EL GDVI+V++ ++ WW GT G FPS FV+
Sbjct: 8 KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ ++D+ +EL GDVI+V++ ++ WW GT
Sbjct: 8 KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGT 43
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 131 SLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 190
S+G D+ A++D ELGF+ GD+I + + +D +W+ G SG+FP +
Sbjct: 6 SVGSDQP---CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINY 62
Query: 191 VRLRVS 196
V + V+
Sbjct: 63 VEILVA 68
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D ELGF+ GD+I + + +D +W+ G
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEG 49
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
A++D ELGF+ GD+I + + +D +W+ G SG+FP +V + V+
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA 64
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D ELGF+ GD+I + + +D +W+ G
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEG 45
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 133 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
M + ++ A+A++ A + L F DVI VL+ D WW+G GWFP ++V+
Sbjct: 6 AMAQGALLQAQALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVK 64
Query: 193 L 193
L
Sbjct: 65 L 65
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D+ A ++EL GD+I V + DWW+G+ G+ G+FP+ V
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFE 51
A++D+ A ++EL GD+I V + DWW+G+ G+ E
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQE 51
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ +++++ +EL + GD+I++ + ++ WW GT G FPS FV+
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ +++++ +EL + GD+I++ + ++ WW GT
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT 46
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWW 43
VLA+A++D+VA +EL FR GD++ VL DT D WW
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWW 42
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWW 176
VLA+A++D+VA +EL FR GD++ VL DT D WW
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWW 42
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ +E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ +E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWW 42
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ +++++ +EL + GD+I++ + ++ WW GT G FPS FV+
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ +++++ +EL + GD+I++ + ++ WW GT
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT 40
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVK 59
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
A+A+ D + +ELGFR D+I ++ D W G GWFP+ FV V E +
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFV--EVLDERSK 67
Query: 202 EDCLAALASGG 212
E +A+ S G
Sbjct: 68 EYSIASGPSSG 78
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 DFVVLA--EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194
+F++L A+ D+ E+ GDV+EV++ + WW+ GW P++F+
Sbjct: 7 EFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 66
Query: 195 VSQEDT 200
S ++T
Sbjct: 67 DSPDET 72
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 4 DFVVLA--EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
+F++L A+ D+ E+ GDV+EV++ + WW+
Sbjct: 7 EFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWF 48
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ + ++ +EL + GD+IEV+ ++ WW G +G FPS F++
Sbjct: 11 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ + ++ +EL + GD+IEV+ ++ WW G
Sbjct: 11 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEG 45
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194
D + A A++D+ A +E+ F D+I ++ +D WW G G FP+ +V LR
Sbjct: 7 DLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
D + A A++D+ A +E+ F D+I ++ +D WW G
Sbjct: 7 DLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRG 47
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A++ A+E EL F GD I +L TL+ W G+ +G FP FV+L
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKL 67
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++ A+E EL F GD I +L TL+ W G+
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGS 52
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
DE L A++D+ E+ + GD++ +L++ ++DWW G+ G+ P+A+V+
Sbjct: 2 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVK 59
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
DE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 2 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
+ + ++ +EL + GD+IEV+ ++ WW G +G FPS F++ + D
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESD 78
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ + ++ +EL + GD+IEV+ ++ WW G
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEG 56
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWW 42
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 193
A A+++ + +L F+ GDVI +L D DWW G G FP+ +VR+
Sbjct: 6 AVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWG 44
A A+++ + +L F+ GDVI +L D DWW G
Sbjct: 6 AVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTG 43
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWW 42
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 155 ELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
ELGF+ GD+I + + +D +W+ G SG+FP +V + V E
Sbjct: 19 ELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLE 62
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 22 ELGFRAGDVIEVLDTLDRDWWWG 44
ELGF+ GD+I + + +D +W+ G
Sbjct: 19 ELGFKEGDIITLTNQIDENWYEG 41
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ E+ + GD++ +L++ ++DWW G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVK 59
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 230 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS-------PEQIQTIFGNLEDI 282
+R V+ EL++TER +V+ L V EGY AE N + + + +FGN+E+I
Sbjct: 11 LRRHVMNELLDTERAYVEELLCVLEGYAAE--MDNPLMAHLISTGLQNKKNILFGNMEEI 68
Query: 283 LAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
F + FL +LE+ +D +G FL+ F
Sbjct: 69 YHFHNRIFLRELESCIDCP----ELVGRCFLERMEEF 101
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 133 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
G DE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 11 GSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 70
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
DE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 13 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 53
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 19/245 (7%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
R V+ EL TER V+ L + + + R + SP +++ IF NLEDIL
Sbjct: 25 RQEVINELFYTERAHVRTLKVLDQVFYQRVSREG-ILSPSELRKIFSNLEDILQLHIGLN 83
Query: 291 EDLE-TKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 349
E ++ + + IGE L SG ++HA CS++ + L +S +
Sbjct: 84 EQMKAVRKRNETSVIDQIGEDLLTWFSGPGEE---KLKHAAATFCSNQ-PFALEMIKSRQ 139
Query: 350 DKARWLAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRPPTDHP-DYVKITE 407
K F Q+ R L + P + + T+ P + K+ +
Sbjct: 140 KKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKK 199
Query: 408 ALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDLIETSSQLIH 456
A + R + +N+ + E+ ++L +Q+R++ E +L T ++IH
Sbjct: 200 AADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRKMIH 259
Query: 457 QGEVI 461
+G ++
Sbjct: 260 EGPLV 264
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 230 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS-------PEQIQTIFGNLEDI 282
+R V+ EL++TER +V+ L V EGY AE N + + + +FGN+E+I
Sbjct: 11 LRRHVMNELLDTERAYVEELLCVLEGYAAE--MDNPLMAHLISTGLQNKKNILFGNMEEI 68
Query: 283 LAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
F + FL +LE+ + D P +G FL+ F
Sbjct: 69 YHFHNRIFLRELESCI--DCP--ELVGRCFLERMEEF 101
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFV 191
A A ++ A + EL R GDV+ + + D+ WW G GWFPS +V
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 230 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS-------PEQIQTIFGNLEDI 282
+R V+ EL++TER +V+ L V EGY AE N + + + +FGN+E+I
Sbjct: 11 LRRHVMNELLDTERAYVEELLCVLEGYAAE--MDNPLMAHLISTGLQNKKNILFGNMEEI 68
Query: 283 LAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
F + FL +LE+ + D P +G FL+ F
Sbjct: 69 YHFHNRIFLRELESCI--DCP--ELVGRCFLERMEEF 101
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 DFVVLA--EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194
+F++L A+ D+ E+ GDV+EV++ + WW+ GW P++F+
Sbjct: 7 EFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 66
Query: 195 VSQEDT 200
S ++T
Sbjct: 67 DSPDET 72
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++ +
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQR 145
Query: 204 CLAALASGGSKTLRRRTSI-----SLLSNDQVRSRVVRELINTER 243
+ A ++R SI LS D R VR L R
Sbjct: 146 QIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFLQQRRR 190
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 4 DFVVLA--EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
+F++L A+ D+ E+ GDV+EV++ + WW+
Sbjct: 7 EFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWF 48
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISK 70
A+ + A+E +E+ G+ +EV+ L WW + + + + + S D+S+
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKS---GQDVSQ 142
Query: 71 SLKRIRPHHALRRS 84
+ ++I+ RRS
Sbjct: 143 AQRQIKRGAPPRRS 156
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 193
A A++ E+ +L FR GDVI +L D DWW G G FP+ +V L
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
Score = 32.0 bits (71), Expect = 0.94, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWG 44
A A++ E+ +L FR GDVI +L D DWW G
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTG 43
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195
E +VV++ ++ E EL +AG+V++V++ + WW+ + E GW P+ ++ +
Sbjct: 9 EQYVVVS----NYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQN 64
Query: 196 S 196
S
Sbjct: 65 S 65
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
E +VV++ ++ E EL +AG+V++V++ + WW+ + E
Sbjct: 9 EQYVVVS----NYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSE 50
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
A+ D+ E+ GDV+EV++ + WW+ GW P++F+ S ++T
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 71
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++
Sbjct: 85 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 133
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
A+ D+ E+ GDV+EV++ + WW+
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWF 47
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+++V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVK 59
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD 487
+++K+ Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK +
Sbjct: 221 AIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAKHERH---IFLFDGLMICCKSN 277
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 423 KRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLV 482
K + +++K+ Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++
Sbjct: 413 KGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAKHERH---IFLFDGLMI 469
Query: 483 YCKRD 487
CK +
Sbjct: 470 CCKSN 474
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L ++D+ EL + GD++ +L++ ++DWW + G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLK 59
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L ++D+ EL + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWW 42
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 423 KRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLV 482
K + +++K+ Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++
Sbjct: 216 KGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAKHERH---IFLFDGLMI 272
Query: 483 YCKRD 487
CK +
Sbjct: 273 CCKSN 277
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+ +V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVK 59
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|1PMS|A Chain A, Pleckstrin Homology Domain Of Son Of Sevenless 1 (Sos1)
With Glycine-Serine Added To The N-Terminus, Nmr, 20
Structures
Length = 136
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD 487
+++K+ Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK +
Sbjct: 6 AIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGA---KHERHIFLFDGLMICCKSN 62
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
++ +A ++ +EL GD+I V + WW GT +GWFPS +VR S E
Sbjct: 11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE 69
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
L +A++ A + +EL GD++ + + + WW+G+ G FP+A+V
Sbjct: 9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
L +A++ A + +EL GD++ + + + WW+G+
Sbjct: 9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS 46
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
A++D++A +A+E+ F+ GD I + +D W +GT R +G P+ +V
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D++A +A+E+ F+ GD I + +D W +GT
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGT 42
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+EL F GD+I + D D +WW GT +G PS +V
Sbjct: 22 DELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 21 EELGFRAGDVIEVLDTLDRDWWWGT 45
+EL F GD+I + D D +WW GT
Sbjct: 22 DELYFEEGDIIYITDMSDTNWWKGT 46
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|E Chain E, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 354
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQI----QTIFGNLEDILAF-QSS 288
V+ EL+ TE+ +V L + EGY+A + PE + + +FGN++ I + +
Sbjct: 16 VLSELVETEKMYVDDLGQIVEGYMATMAAQG---VPESLRGRDRIVFGNIQQIYEWHRDY 72
Query: 289 FLEDLETKL---DWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK 339
FL++L+ L DW + + F+KH+ H ++ ++C +K K
Sbjct: 73 FLQELQRCLKDPDW-------LAQLFIKHERRLHMYV---------VYCQNKPK 110
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
L A++D+ +E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 3 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
L A++D+ +E+ + GD++ +L++ ++DWW
Sbjct: 3 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWW 37
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L ++D+ EL + GD++ +L++ ++DWW + G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L ++D+ EL + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWW 42
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 41
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 230 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQT--------IFGNLED 281
+R V EL++TER +V+ L V EGY AE ++ I T +FGN E+
Sbjct: 11 LRRHVXNELLDTERAYVEELLCVLEGYAAE---XDNPLXAHLISTGLQNKKNILFGNXEE 67
Query: 282 ILAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
I F + FL +LE+ +D +G FL+ F
Sbjct: 68 IYHFHNRIFLRELESCIDCP----ELVGRCFLERXEEF 101
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGW 185
MDE L A++D+ E+ + GD++ +L++ ++DWW G E G+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGF 60
Query: 186 FPSAFVR 192
P+A+V+
Sbjct: 61 VPAAYVK 67
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
DE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 2 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVK 59
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
DE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 2 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 41
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
EA++ + A + E+L F+ GD+I VL ++ +W G G FP FV
Sbjct: 9 EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
EA++ + A + E+L F+ GD+I VL ++ +W G
Sbjct: 9 EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEG 43
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGW 185
MDE L A++D+ E+ + GD++ +L++ ++DWW G E G+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGF 60
Query: 186 FPSAFVR 192
P+A+V+
Sbjct: 61 VPAAYVK 67
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
A A + + A+EL FR GDV+ + + DWW G G P ++ L E V
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQV 72
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A + + A+EL FR GDV+ + + DWW G
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRG 48
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+EL F GD+I + D D +WW GT +G PS +V
Sbjct: 18 DELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 21 EELGFRAGDVIEVLDTLDRDWWWGT 45
+EL F GD+I + D D +WW GT
Sbjct: 18 DELYFEEGDIIYITDMSDTNWWKGT 42
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
A+ D+ E+ GDV+EV++ + WW+ GW P++F+ S ++T
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 72
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++ +
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQR 145
Query: 204 CLAALASGGSKTLRRRTSI-----SLLSNDQVRSRVVRELINTER 243
+ A ++R SI LS D R VR L R
Sbjct: 146 QIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFLQQRRR 190
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISK 70
A+ + A+E +E+ G+ +EV+ L WW + + + + + S D+S+
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKS---GQDVSQ 142
Query: 71 SLKRIRPHHALRRS 84
+ ++I+ RRS
Sbjct: 143 AQRQIKRGAPPRRS 156
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
A+ D+ E+ GDV+EV++ + WW+
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWF 48
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A+A+ A + L F D+I VL+ +WW+G GWFP ++V++
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
+A++ ++ +EL R GD+++V++ D W+ GT R + G FP +V+
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++ ++ +EL R GD+++V++ D W+ GT
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGT 45
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ +A++D+ A +EL F+ GD I V WW G GW P+ +V+
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ +A++D+ A +EL F+ GD I V WW G GW P+ +V+
Sbjct: 5 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L ++D+ E+ + GD++ +L++ ++DWW + G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L ++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWW 42
>pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1
Length = 354
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 421 ERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQ 480
+ K + +++K Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD
Sbjct: 214 QXKGKQLAIKKXNEIQKNIDGWEGKDIGQCCNEFIXEGTLTRVGAKHERH---IFLFDGL 270
Query: 481 LVYCKRD 487
+ CK +
Sbjct: 271 XICCKSN 277
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 27/195 (13%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI 62
ED + ++D +AE+L F+ G+++ +++ + WW + + I + +
Sbjct: 122 EDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDG--RVGMIPVPY-- 177
Query: 63 SPNCDISKSLKRIRPH--HALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNXXXXXXXX 120
+ L R PH H R S S GI E + +P T P
Sbjct: 178 ------VEKLVRSSPHGKHGNRNSNS--YGIPEPA-HAXAQPQTTTP----------LPA 218
Query: 121 XXXXXXXXVTSLGMDEDFVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 178
+T L ++ V A+A+ V A + L GD+++V W G
Sbjct: 219 VSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE 278
Query: 179 RGEASGWFPSAFVRL 193
G FP V++
Sbjct: 279 VNGRKGLFPFTHVKI 293
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L ++D+ EL + GD++ +L++ ++DWW G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLK 59
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L ++D+ EL + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWW 42
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
+A++ ++ +EL R GD+++V++ D W+ GT R + G FP +V+
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++ ++ +EL R GD+++V++ D W+ GT
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGT 45
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 150 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
AM E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 44
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 17 AMEAEELGFRAGDVIEVLDTLDRDWW 42
AM E+ + GD++ +L++ ++DWW
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWW 27
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 27/195 (13%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI 62
ED + ++D +AE+L F+ G+++ +++ + WW + + I + +
Sbjct: 122 EDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDG--RVGMIPVPY-- 177
Query: 63 SPNCDISKSLKRIRPH--HALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNXXXXXXXX 120
+ L R PH H R S S GI E + +P T P
Sbjct: 178 ------VEKLVRSSPHGKHGNRNSNS--YGIPEPA-HAYAQPQTTTP----------LPA 218
Query: 121 XXXXXXXXVTSLGMDEDFVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 178
+T L ++ V A+A+ V A + L GD+++V W G
Sbjct: 219 VSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE 278
Query: 179 RGEASGWFPSAFVRL 193
G FP V++
Sbjct: 279 VNGRKGLFPFTHVKI 293
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
MDE L ++D+ E+ + GD++ +L++ ++DWW + G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLK 59
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L ++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWW 42
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSP---EQIQTIFGNLEDILAFQS 287
+ ++ EL+ TE+ +V+ LH+ E YL E + P + IFGN+++I F +
Sbjct: 13 KEFIMAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDFHN 72
Query: 288 S-FLEDLE 294
+ FL++LE
Sbjct: 73 NIFLKELE 80
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 129 VTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWF 186
V +L M E+ +V+A+ WD+ A + +EL + + + +LD D WW R A +G+
Sbjct: 23 VKNLHMTEEVIVIAK--WDYTAQQDQELDIKKNERLWLLD--DSKTWWRVRNAANRTGYV 78
Query: 187 PSAFV 191
PS +V
Sbjct: 79 PSNYV 83
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
M E+ +V+A+ WD+ A + +EL + + + +LD D WW R A
Sbjct: 28 MTEEVIVIAK--WDYTAQQDQELDIKKNERLWLLD--DSKTWWRVRNAA 72
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 131 SLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGEASGWFP 187
S+G+ V A +WD+ A +EL FR G+ + VL + DWWW G+ P
Sbjct: 148 SMGLMNSGAVYA--LWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Query: 188 SAFVRL 193
+ L
Sbjct: 206 RNYFGL 211
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGT 45
A+WD+ A +EL FR G+ + VL + DWWW
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAA 196
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
L A++D+ E+ + GD++ +L++ ++DWW G+ P+A+V+
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVK 54
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 37
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
A++ + ++E +L F G+ I V D +WW G+ G+ SG FPS +V+
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVK 60
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A++D+ A +EL AGD++EV+ + WW R G+ P +++
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D+ A +EL AGD++EV+ + WW
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWW 44
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 3 LVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 3 LVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWW 37
>pdb|1AWE|A Chain A, Human Sos1 Pleckstrin Homology (Ph) Domain, Nmr, 20
Structures
Length = 130
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 436 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD 487
Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK +
Sbjct: 5 QKNIDGWEGKDIGQCCNEFIMEGTLTRVGA---KHERHIFLFDGLMICCKSN 53
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFVR---------- 192
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVS 198
Query: 193 --LRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLH 250
+ +QE + L G T + L N + +RV+++ + D +
Sbjct: 199 ALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALAL 258
Query: 251 DVSE 254
+V E
Sbjct: 259 EVGE 262
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 35/196 (17%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISK 70
A++D + E+L F+ GD++ + D + WW E + +
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPV-------------P 185
Query: 71 SLKRIRPHHALRRSVSQPLGINELSPLLRRKPI-GTRPGDGTNXXXXXXXXXXXXXXXXV 129
+++ RP A SVS +G N+ +P+ G PG
Sbjct: 186 YVEKYRPASA---SVSALIGGNQEG--SHPQPLGGPEPGPYAQPSVN------------- 227
Query: 130 TSLGMDEDFVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFP 187
T L ++ + A + V A + L G++++V W G G FP
Sbjct: 228 TPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFP 287
Query: 188 SAFVRLRVSQEDTVED 203
VRL + Q++ ED
Sbjct: 288 FTHVRL-LDQQNPEED 302
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 193
A A +D+ A E EL F D I ++ +D DWW G + + G FPS +V L
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 60
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A +D+ A E EL F D I ++ +D DWW G
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLG 42
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 36.2 bits (82), Expect = 0.044, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+A++ + A + +EL F A D+I+++ WW G G FP+ +V
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+A++ + A + +EL F A D+I+++ WW G
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTG 43
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 227 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQ 286
N + V++ ++ TE ++ K L V YL + ++ S I + GNLE+I +FQ
Sbjct: 10 NKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQT-SEKLSSANISYLMGNLEEICSFQ 68
Query: 287 SSFLEDLE--TKL 297
++ LE TKL
Sbjct: 69 QMLVQSLEECTKL 81
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
++ E+ F AG ++VL+ + WW+ GE GW PS ++ L +++
Sbjct: 20 VQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQ 67
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A++D+ + +EL F+ G +I V+ D W+ G +G FP +V
Sbjct: 22 AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGS 213
+EL GD+I + D D +WW GT +G PS +V Q +++++ L A G+
Sbjct: 29 DELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV---AEQAESIDNPLHEAAKRGN 85
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 21 EELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHSISPNCDISKSLKRIRPHH 79
+EL GD+I + D D +WW GT +G S + + S + + ++ KR
Sbjct: 29 DELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSW 88
Query: 80 ALRRSVSQPLGINEL 94
LR + +G+N L
Sbjct: 89 -LRECLDNRVGVNGL 102
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 193
A A +D+ A E EL F D I ++ +D DWW G + + G FPS +V L
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 57
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A +D+ A E EL F D I ++ +D DWW G
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLG 39
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 35.8 bits (81), Expect = 0.055, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 193
A A +D+ A E EL F D I ++ +D DWW G + + G FPS +V L
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A +D+ A E EL F D I ++ +D DWW G
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLG 38
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 35.8 bits (81), Expect = 0.064, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
EA++ + +LG + GD +++L+ L +W+ G+ +G FP+ +V+
Sbjct: 6 EALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 110/291 (37%), Gaps = 73/291 (25%)
Query: 224 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDIL 283
L ++ R + ELI TE ++V L V+E + + +++ + +++ IF N ++++
Sbjct: 3 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLMESELLTEKEVAMIFVNWKELI 61
Query: 284 AFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL 341
L+ L K+ + IG+ S PH+ +R
Sbjct: 62 MCNIKLLKALRVRKKMSGEKMPVKMIGDIL----SAQLPHMQPYIR-------------- 103
Query: 342 LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSS-------R 394
FC R L A L++Q ++ +F K LA RC +
Sbjct: 104 -FCSRQLNGAA-----------LIQQKTDEAPDFKEFVKRLAM--DPRCKGMPLSEFILK 149
Query: 395 P------------------PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQ 436
P P +HPD+ + ALE ++ +NE R E+ ++L W
Sbjct: 150 PMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRL-EWI 208
Query: 437 QRVEGWEG--EDLIETS-------SQLIHQGEVIRVTSGMWTNTITLFLFD 478
Q EG E L+ S + +H G++ + S + FLF+
Sbjct: 209 QAHVQCEGLSEQLVFNSVTNCLGPRKFLHSGKLYKAKSN---KELYGFLFN 256
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFV 191
F +A++D+ A +EL F +I+ ++ D WW G G+ WFPS +V
Sbjct: 5 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 59
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
F +A++D+ A +EL F +I+ ++ D WW G G
Sbjct: 5 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYG 47
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 35.4 bits (80), Expect = 0.070, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A A +D A +EL + GD++ + +D++W+ G G FP ++ L
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A +D A +EL + GD++ + +D++W+ G
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG 45
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 35.4 bits (80), Expect = 0.071, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGWFPSAFVR 192
L A++D+ E+ + GD++ +L++ ++DWW G E G+ P+A+V+
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 37
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFV 191
V + A++D+ A E+L F+ G+ ++++ + D WW R A SG+ PS +V
Sbjct: 27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGD-WWEARSIATGKSGYIPSNYV 81
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
V + A++D+ A E+L F+ G+ ++++ + DWW
Sbjct: 27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWW 63
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 1 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYV 55
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH 60
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A I N+
Sbjct: 1 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNY 54
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 35.4 bits (80), Expect = 0.075, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
A++D+ A + +E+ FR GD I + +D W +GT R +G P+ ++
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D+ A + +E+ FR GD I + +D W +GT
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGT 45
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 35.4 bits (80), Expect = 0.083, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFV 191
F +A++D+ A +EL F +I+ ++ D WW G G+ WFPS +V
Sbjct: 2 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
M E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 42
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 148 HVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+VA +EL G + V++ WW G+ GWFPS +V
Sbjct: 9 YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 35.0 bits (79), Expect = 0.093, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRLRVS 196
F +A++D+ A +EL F +I+ ++ + WW G G+ WFPS +V V+
Sbjct: 5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64
Query: 197 QEDTVED 203
E D
Sbjct: 65 PEGIHRD 71
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 35.0 bits (79), Expect = 0.095, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 153 AEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 13 GREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 52
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 35.0 bits (79), Expect = 0.098, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 24 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYV 78
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A
Sbjct: 24 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLA 66
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
AV+D+ A + +E+ F+ GD I + +D W +GT R +G P+ +V
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 57
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
AV+D+ A + +E+ F+ GD I + +D W +GT
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGT 42
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGW 185
MDE L A++D+ E+ + GD++ +L++ ++DWW E G+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGF 60
Query: 186 FPSAFVR 192
P+A+V+
Sbjct: 61 VPAAYVK 67
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
MDE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 42
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
D + A ++++A +EL G + V++ WW G+ GWFPS +V
Sbjct: 15 DLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEA--SGWFPSAFVRL 193
+A+ +VA +E+L G +I +L WW G RG+ GWFP++ V+L
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
A A +D A +EL F+ GD+++VL + D++W+ G+ P ++ ++ E
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFI 71
Query: 201 VED 203
V D
Sbjct: 72 VTD 74
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 59
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 193
A+WD+ +EL + GD + ++ D D WWW + G+ P + L
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWG 44
A+WD+ +EL + GD + ++ D D WWW
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWA 211
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
V + A++D+ A E+L F+ G+ ++++ + D WW R A+ G+ PS +V
Sbjct: 5 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGD-WWEARSIATGKNGYIPSNYV 59
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
V + A++D+ A E+L F+ G+ ++++ + DWW
Sbjct: 5 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWW 41
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDR--DWWWGTRGEASGWFPSAFVRL 193
A++ + +L F+AGD I V+ D DWW G +G FP+ +V +
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 49/279 (17%)
Query: 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQ---TIFGNLEDILAFQSS-F 289
++ ELI TE+ +V+ L + + YL E + P + IFGN+++I F ++ F
Sbjct: 15 IMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIF 74
Query: 290 LEDLET--KLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDK-DKWLLFCCR 346
L++LE +L D +G F+ F ++ +C +K D L
Sbjct: 75 LKELEKYEQLPED------VGHCFVTWADKFQMYV---------TYCKNKPDSTQLI--- 116
Query: 347 SLEDKARWLAAFQQERALVEQDRE---DGLEFAPAAKELARMSAARCHSSRPPTDHPDYV 403
LE + QQ L ++ + L + C +
Sbjct: 117 -LEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKG-------- 167
Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463
+I + LE M V N+ L L + + +E +GE +++ S Q+ +IR
Sbjct: 168 EIKDGLEVMLSVPKRANDAMH----LSMLEGFDENIES-QGELILQESFQVWDPKTLIR- 221
Query: 464 TSGMWTNTITLFLFDHQLVYCK--RDILKRNTHVYKARL 500
G + LFLF+ LV+ K +D R+ ++YK++L
Sbjct: 222 -KGRERH---LFLFEMSLVFSKEVKDSSGRSKYLYKSKL 256
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 193
A+WD+ +EL + GD + ++ D D WWW + G+ P + L
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWG 44
A+WD+ +EL + GD + ++ D D WWW
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWA 211
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEASGWFPSAFVRL 193
A ++D+ A + EL A +VI V +D DW G RG G P ++ L
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 146 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
++++A +EL G + V++ WW G+ GWFPS +V
Sbjct: 11 FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 8 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYV 62
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH 60
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A I N+
Sbjct: 8 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNY 61
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 133 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSA 189
M ++ A++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS
Sbjct: 2 AMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSN 59
Query: 190 FV 191
+V
Sbjct: 60 YV 61
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH 60
M ++ A++D+ A+ E+L F+ GD + VL+ + WW R A I N+
Sbjct: 3 MGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNY 60
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 49/279 (17%)
Query: 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQ---TIFGNLEDILAFQSS-F 289
++ ELI TE+ +V+ L + + YL E + P + IFGN+++I F ++ F
Sbjct: 13 IMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIF 72
Query: 290 LEDLET--KLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDK-DKWLLFCCR 346
L++LE +L D +G F+ F ++ +C +K D L
Sbjct: 73 LKELEKYEQLPED------VGHCFVTWADKFQMYV---------TYCKNKPDSTQLI--- 114
Query: 347 SLEDKARWLAAFQQERALVEQDRE---DGLEFAPAAKELARMSAARCHSSRPPTDHPDYV 403
LE + QQ L ++ + L + C +
Sbjct: 115 -LEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKG-------- 165
Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463
+I + LE M V N+ L L + + +E +GE +++ S Q+ +IR
Sbjct: 166 EIKDGLEVMLSVPKRANDAMH----LSMLEGFDENIES-QGELILQESFQVWDPKTLIR- 219
Query: 464 TSGMWTNTITLFLFDHQLVYCK--RDILKRNTHVYKARL 500
G + LFLF+ LV+ K +D R+ ++YK++L
Sbjct: 220 -KGRERH---LFLFEMSLVFSKEVKDSSGRSKYLYKSKL 254
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal
Biogenesis Factor 13
Length = 93
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT-RGEASGWFPSAF 190
ED V+A A +D VA+ EE+ FRAGD++ + R W + G+ +G P+ +
Sbjct: 14 EDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANY 73
Query: 191 VRL 193
V++
Sbjct: 74 VKI 76
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEV 33
ED V+A A +D VA+ EE+ FRAGD++ +
Sbjct: 14 EDDHVVARAEYDFVAVSDEEISFRAGDMLNL 44
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 153 AEELGFRAGDVIEVLDTLDRDWWWGTRGEA-SGWFPSAFVRL 193
+ L F AG++I +L D WW G + + GWFP+++V+L
Sbjct: 18 GQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQL 59
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFV 191
M E+ +V+A+ WD+ A + +EL + + + +LD D WW R A +G+ PS +V
Sbjct: 1 MTEEVIVIAK--WDYTAQQDQELDIKKNERLWLLD--DSKTWWRVRNAANRTGYVPSNYV 56
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A+A+ ++ +L F GDVI + LD +W+ G SG FP++ V +
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFV 191
V L A++D+ A +L F G+ ++LD DWW T GE +G+ PS +V
Sbjct: 6 VTLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGE-TGYIPSNYV 60
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
V L A++D+ A +L F G+ ++LD DWW
Sbjct: 6 VTLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWW 42
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 148 HVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+VA +EL G + V + WW G+ GWFPS +V
Sbjct: 10 YVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
ED +V+A ++D+V+ ++L F+ GD + VL+ WW R A+ G+ PS +V
Sbjct: 2 EDIIVVA--LYDYVSWSPDDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 56
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH 60
ED +V+A ++D+V+ ++L F+ GD + VL+ WW R A I N+
Sbjct: 2 EDIIVVA--LYDYVSWSPDDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNY 55
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Irtks-Sh3
And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 156 LGFRAGDVIEVLDTLDRD-WWWGTR--GEASGWFPSAFVRL 193
L F GDVI +L ++D W +G +A GWFPS++ +L
Sbjct: 24 LSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 8 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYV 62
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 463 VTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 513
V +G+ T T L+L+D+Q+ + + R T + RL++D +Q+ LP G
Sbjct: 24 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQL--TRLDLDNNQLTVLPAG 72
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVRLRVSQE 198
A++ +D VA + EL DV+E+LD DR WW R + SG+ P+ + + + E
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEILD--DRRQWWKVRNASGDSGFVPNNILDIMRTPE 60
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
A++ +D VA + EL DV+E+LD DR WW R
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEILD--DRRQWWKVR 39
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 463 VTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 513
V +G+ T T L+L+D+Q+ + + R T + RL++D +Q+ LP G
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQL--TRLDLDNNQLTVLPAG 80
>pdb|1SPK|A Chain A, Solution Structure Of Rsgi Ruh-010, An Sh3 Domain From
Mouse Cdna
Length = 72
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 156 LGFRAGDVIEVLDTLDRD-WWWGTRG--EASGWFPSAFVRL 193
L F GDV+ +L ++D W +G +A GWFPS++ +L
Sbjct: 25 LSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 131 SLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFP 187
S G + V + ++D A +EL F G+VI V D++WW G + E G FP
Sbjct: 2 SSGSSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFP 61
Query: 188 SAFVRL 193
+FV +
Sbjct: 62 VSFVHI 67
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVSQED 199
A++ A +E+ F +GD+I+V + + W +G+ GWFP +V S E+
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSEN 67
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHSI 62
+WD + EEL FRAGDV V + WWW T EA ++Q + H+
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARK-EEQWWWATLLDEAGGAVAQGYVPHNY 66
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 178
+WD + EEL FRAGDV V + WWW T
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARK-EEQWWWAT 48
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGTRGEAS-GWFPSAFV 191
AV+D+ A EEL R GD ++VL + D WW G G FPS +V
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWG 44
AV+D+ A EEL R GD ++VL + D WW G
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTG 72
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
ED +V+A ++D+V+ ++L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 2 EDIIVVA--LYDYVSWSPDDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYV 56
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 109/291 (37%), Gaps = 73/291 (25%)
Query: 224 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDIL 283
L ++ R + ELI TE ++V L V+E + + +++ + +++ IF N ++++
Sbjct: 3 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLMESELLTEKEVAMIFVNWKELI 61
Query: 284 AFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL 341
L+ L K+ + IG+ S PH+ +R
Sbjct: 62 MCNIKLLKALRVRKKMSGEKMPVKMIGDIL----SAQLPHMQPYIR-------------- 103
Query: 342 LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSS-------R 394
FC R L A L++Q ++ +F K L RC +
Sbjct: 104 -FCSRQLNGAA-----------LIQQKTDEAPDFKEFVKRLE--MDPRCKGMPLSSFILK 149
Query: 395 P------------------PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQ 436
P P +HPD+ + ALE ++ +NE R E+ ++L W
Sbjct: 150 PMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRL-EWI 208
Query: 437 QRVEGWEG--EDLIETS-------SQLIHQGEVIRVTSGMWTNTITLFLFD 478
Q EG E L+ S + +H G++ + + + FLF+
Sbjct: 209 QAHVQCEGLSEQLVFNSVTNCLGPRKFLHSGKLYKAKNN---KELYGFLFN 256
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFVRL 193
+ ++D A +EL F G+VI V D++WW G + E G FP +FV +
Sbjct: 4 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 58
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
++ A++D+ A+ E+L F+ GD + VL+ WW R A+ G+ PS +V
Sbjct: 1 IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 53
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A A +D+V A EL F+ G + + DWW G G P ++
Sbjct: 8 FAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A A +D+V A EL F+ G + + DWW G
Sbjct: 8 FAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEG 44
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 141 LAEAV--WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ EA+ +D+ A +EL G++I + D WW G G FP FVR
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVR 54
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 20 AEELGFRAGDVIEVLDTLDRDWWWGTR 46
++ L FR GDV+ V+D D +WW R
Sbjct: 446 SQALSFRFGDVLHVIDAGDEEWWQARR 472
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 153 AEELGFRAGDVIEVLDTLDRDWWWGTR 179
++ L FR GDV+ V+D D +WW R
Sbjct: 446 SQALSFRFGDVLHVIDAGDEEWWQARR 472
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 156 LGFRAGDVIEVLD--TLDRDWWWGTRGEASGWFPSAFVR 192
L F GD+I++L TL+ W +G+ G SG FP+ V+
Sbjct: 25 LSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment
Of Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 20 AEELGFRAGDVIEVLDTLDRDWWWGTR 46
++ L FR GDV+ V+D D +WW R
Sbjct: 26 SQALSFRFGDVLHVIDAGDEEWWQARR 52
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 153 AEELGFRAGDVIEVLDTLDRDWWWGTR 179
++ L FR GDV+ V+D D +WW R
Sbjct: 26 SQALSFRFGDVLHVIDAGDEEWWQARR 52
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A A +D+V A EL F+ G + + DWW G G P ++
Sbjct: 12 AIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYI 61
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 153 AEELGFRAGDVIEVLDTLDRDWWWGTRGEAS------GWFPS 188
++ L FR GDV+ V+D D +WW R + G+ PS
Sbjct: 20 SQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPS 61
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 20 AEELGFRAGDVIEVLDTLDRDWWWGTR 46
++ L FR GDV+ V+D D +WW R
Sbjct: 20 SQALSFRFGDVLHVIDAGDEEWWQARR 46
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFV 191
A++D++ M A +L R GD +L+ + WW + G+ PS +V
Sbjct: 6 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 54
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D++ M A +L R GD +L+ + WW
Sbjct: 6 ALYDYMPMNANDLQLRKGDEYFILEESNLPWW 37
>pdb|2C3Q|A Chain A, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|B Chain B, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|C Chain C, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|D Chain D, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3T|A Chain A, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|B Chain B, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|C Chain C, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|D Chain D, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
Length = 247
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 401 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGE 459
D V ITE + + + E KLA W+QRVE GEDL + + ++I + +
Sbjct: 174 DLVAITELMHP-------VGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAK 225
>pdb|2C3N|A Chain A, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|B Chain B, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|C Chain C, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|D Chain D, Human Glutathione-S-Transferase T1-1, Apo Form
Length = 247
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 401 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGE 459
D V ITE + + + E KLA W+QRVE GEDL + + ++I + +
Sbjct: 174 DLVAITELMHP-------VGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAK 225
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFV 191
A++D++ M A +L R GD +L+ + WW + G+ PS +V
Sbjct: 13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
Length = 62
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 57
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 175
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 57
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS--GWFPSAFV 191
V A++D+ E +EL F+AGD + ++ D W R + G +P+ +V
Sbjct: 429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFV 191
V +A++D+ +EL F G +I +L+ ++D +W G G FPS V
Sbjct: 8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFVRLR 194
A +++ A A+EL + GD + +L+T + W+ G + G FP++++ L+
Sbjct: 16 AFYNYDARGADELSLQIGDTVHILETYE-GWYRGYTLRKKSKKGIFPASYIHLK 68
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 308 GETFLKHKS-------GFHPHL-GVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQ 359
GE F+ K GF P G H I I D+ LF C + D+ W+AAFQ
Sbjct: 311 GEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRK--FLFACETESDQREWVAAFQ 368
Query: 360 Q--ERALVEQD 368
+ +R ++ Q+
Sbjct: 369 KAVDRPMLPQE 379
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A +D A +EL + GD++ + +D++W G G FP+ +V +
Sbjct: 10 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 61
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 145 VWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
V + + +E+GF G +EV+ WW+ GW P+++++
Sbjct: 14 VQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 308 GETFLKHKS-------GFHPHL-GVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQ 359
GE F+ K GF P G H I I D+ LF C + D+ W+AAFQ
Sbjct: 313 GEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRK--FLFACETESDQREWVAAFQ 370
Query: 360 Q--ERALVEQD 368
+ +R ++ Q+
Sbjct: 371 KAVDRPMLPQE 381
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 143 EAVWDHVAMEAEEL-GFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRL 193
+A++ H A + L F+ GD+I +L RD W E + GWFP ++ R+
Sbjct: 11 KAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--ASGWFPSAFV 191
M E+ VV+A+ +D+VA + +EL + + + +LD D WW R +G+ PS +V
Sbjct: 4 MAEEVVVVAK--FDYVAQQEQELDIKKNERLWLLD--DSKSWWRVRNSMNKTGFVPSNYV 59
Query: 192 RLRVS 196
+ S
Sbjct: 60 ERKNS 64
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A +D A +EL + GD++ + +D++W G G FP+ +V +
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
A++ + +EL R GD ++V+ D W+ G R + G FP +V
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--ASGWFPSAFV 191
M E+ VV+A+ +D+VA + +EL + + + +LD D WW R +G+ PS +V
Sbjct: 3 MAEEVVVVAK--FDYVAQQEQELDIKKNERLWLLD--DSKSWWRVRNSMNKTGFVPSNYV 58
Query: 192 RLRVS 196
+ S
Sbjct: 59 ERKNS 63
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 189
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 172
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++++ D + WW
Sbjct: 6 ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWW 37
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 175
A++D + E+L F+ GD++++ D + WW
Sbjct: 6 ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWW 37
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 187
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 170
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 37
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 145 VWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAF 190
++ + +EL FR G++I ++ +T + WW G G FP F
Sbjct: 12 LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS--GWFPSAFV 191
V A++D+ E +EL F+AGD + L D W R ++ G +P+ +V
Sbjct: 4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 39
>pdb|1X6G|A Chain A, Solution Structures Of The Sh3 Domain Of Human
Megakaryocyte-Associated Tyrosine-Protein Kinase
Length = 81
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
+H + EL FR GDV+ +L+ + W+ + SG
Sbjct: 25 EHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSG 62
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 19 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 67
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 19 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 50
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 5 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 53
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 5 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 36
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRLR 194
D A +EL F+ GD+++VL + D++W+ G+ P ++ ++
Sbjct: 8 DFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 37
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 39
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EASGWFPSAFV 191
+A++D+ A ++EL F G +I + WW G G +FPS +V
Sbjct: 11 KALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 191
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D + E+L F+ GD++ + D + WW
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW 37
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho Guanine
Exchange Factor (Gef) 16
Length = 79
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 150 AMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVRL 193
A +A+E+ + DV+ VL D W +G R GE +GWFP F R
Sbjct: 28 AKQADEVTLQQADVVLVLQQED-GWLYGERLRDGE-TGWFPEDFARF 72
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 132 LGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAF 190
LG E+ VV+A ++D+ + +EL R + +LD+ + WW R G+ PS++
Sbjct: 3 LGSPEETVVIA--LYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSY 60
Query: 191 V 191
+
Sbjct: 61 L 61
>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel
pdb|1VYV|B Chain B, Beta4 Subunit Of Ca2+ Channel
Length = 359
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 133 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSA 189
+DED V + AV F A D + + + + DWW G G G+ PS
Sbjct: 57 ALDEDVPVPSSAV-----------SFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP 105
Query: 190 --FVRLRVSQE 198
+R+ QE
Sbjct: 106 LRLENIRIQQE 116
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 68
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 146 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFP 187
+D A + EL + DV+EVLD D WW R A G+ P
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLD--DSRKWWKVRDPAGQEGYVP 56
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR----GEASGWFPSAFV 191
V L A++D+ A +L F G+ ++LD WW R GE +G+ PS +V
Sbjct: 6 VTLFVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGE-TGYIPSNYV 61
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 64
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 146 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFP 187
+D A + EL + DV+EVLD D WW R A G+ P
Sbjct: 14 YDFQARNSSELSVKQRDVLEVLD--DSRKWWKVRDPAGQEGYVP 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,725,534
Number of Sequences: 62578
Number of extensions: 575140
Number of successful extensions: 1878
Number of sequences better than 100.0: 252
Number of HSP's better than 100.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 478
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)