Query psy824
Match_columns 518
No_of_seqs 438 out of 3383
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 22:16:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2070|consensus 100.0 9.3E-47 2E-51 359.1 22.4 357 138-518 16-373 (661)
2 KOG4424|consensus 100.0 3.4E-42 7.4E-47 336.1 20.6 264 228-513 64-333 (623)
3 KOG3523|consensus 100.0 9.5E-37 2.1E-41 298.7 20.6 277 223-512 250-540 (695)
4 KOG2996|consensus 100.0 3.4E-36 7.3E-41 292.2 18.8 267 226-513 193-463 (865)
5 KOG4305|consensus 100.0 2.3E-36 5.1E-41 318.3 11.4 338 141-512 267-622 (1029)
6 KOG3520|consensus 100.0 1.2E-35 2.5E-40 313.8 13.5 292 211-512 371-682 (1167)
7 KOG3518|consensus 100.0 5.6E-34 1.2E-38 260.2 12.5 258 230-509 121-389 (521)
8 KOG3521|consensus 100.0 5.3E-32 1.1E-36 267.0 18.5 279 223-512 170-486 (846)
9 cd00160 RhoGEF Guanine nucleot 100.0 1.3E-30 2.8E-35 236.6 15.9 177 231-420 1-181 (181)
10 smart00325 RhoGEF Guanine nucl 100.0 1E-30 2.2E-35 237.1 13.8 178 234-421 1-180 (180)
11 KOG3519|consensus 100.0 1.1E-29 2.4E-34 273.0 15.2 359 142-517 249-626 (756)
12 PF00621 RhoGEF: RhoGEF domain 99.9 4.6E-27 9.9E-32 213.1 15.1 177 234-421 1-180 (180)
13 KOG3522|consensus 99.9 9.9E-27 2.2E-31 236.7 14.3 257 231-513 1-274 (925)
14 COG5422 ROM1 RhoGEF, Guanine n 99.9 3.1E-27 6.8E-32 239.7 8.3 285 221-515 475-773 (1175)
15 KOG4226|consensus 99.9 8E-24 1.7E-28 188.3 9.5 144 5-197 106-252 (379)
16 KOG4348|consensus 99.9 2.6E-24 5.6E-29 203.0 6.4 191 6-196 100-320 (627)
17 KOG1029|consensus 99.9 1.2E-23 2.7E-28 210.8 9.2 180 10-195 910-1109(1118)
18 KOG4225|consensus 99.9 2E-21 4.4E-26 184.5 12.8 192 2-193 226-488 (489)
19 KOG0689|consensus 99.8 5.3E-22 1.2E-26 195.7 2.9 254 228-512 60-320 (448)
20 KOG3531|consensus 99.8 4.4E-22 9.6E-27 201.9 1.0 263 232-513 535-807 (1036)
21 KOG4240|consensus 99.8 1.7E-21 3.6E-26 205.5 2.4 252 229-515 631-893 (1025)
22 KOG4348|consensus 99.8 2E-21 4.3E-26 183.7 1.4 157 8-198 3-159 (627)
23 KOG1029|consensus 99.8 2E-20 4.4E-25 188.0 6.6 168 6-192 693-865 (1118)
24 KOG3524|consensus 99.8 4.1E-20 8.8E-25 184.7 6.9 267 226-512 380-665 (850)
25 KOG4226|consensus 99.8 1E-18 2.2E-23 155.9 9.3 160 6-196 4-164 (379)
26 KOG4792|consensus 99.8 3.3E-18 7.2E-23 148.7 9.3 164 4-198 122-288 (293)
27 KOG3601|consensus 99.7 2.9E-17 6.3E-22 142.4 4.0 176 7-194 1-218 (222)
28 PF14604 SH3_9: Variant SH3 do 99.5 1.9E-14 4.1E-19 98.8 5.8 49 11-59 1-49 (49)
29 PF14604 SH3_9: Variant SH3 do 99.5 1.6E-14 3.4E-19 99.2 5.3 49 144-192 1-49 (49)
30 PF07653 SH3_2: Variant SH3 do 99.4 8.7E-13 1.9E-17 93.5 5.6 54 141-194 1-55 (55)
31 PF07653 SH3_2: Variant SH3 do 99.3 1.7E-12 3.6E-17 92.1 6.0 53 8-60 1-54 (55)
32 KOG2996|consensus 99.3 1.1E-12 2.4E-17 129.2 5.7 58 137-194 803-862 (865)
33 KOG3632|consensus 99.3 3.1E-12 6.7E-17 132.9 7.3 153 6-194 1138-1307(1335)
34 KOG2199|consensus 99.3 4.5E-13 9.8E-18 126.6 0.6 56 5-60 214-269 (462)
35 PF00018 SH3_1: SH3 domain; I 99.3 6.6E-12 1.4E-16 86.3 5.4 46 10-55 1-48 (48)
36 KOG1118|consensus 99.3 8.7E-12 1.9E-16 114.0 7.3 58 139-196 306-363 (366)
37 cd01224 PH_Collybistin Collybi 99.2 3.7E-11 8.1E-16 95.2 8.5 64 453-516 1-65 (109)
38 KOG2070|consensus 99.2 7E-12 1.5E-16 121.4 4.2 57 6-62 17-73 (661)
39 KOG2199|consensus 99.2 3.4E-11 7.3E-16 114.1 7.5 59 137-195 213-271 (462)
40 PF00018 SH3_1: SH3 domain; I 99.2 1.9E-11 4.2E-16 83.9 4.2 46 143-188 1-48 (48)
41 cd01261 PH_SOS Son of Sevenles 99.2 6.8E-11 1.5E-15 95.5 7.8 64 452-515 2-73 (112)
42 cd01220 PH_CDEP Chondrocyte-de 99.1 3.1E-10 6.7E-15 90.4 8.9 60 453-513 1-60 (99)
43 cd01218 PH_phafin2 Phafin2 Pl 99.1 3.2E-10 6.9E-15 90.6 8.7 63 451-515 1-63 (104)
44 KOG0162|consensus 99.1 3.4E-10 7.3E-15 114.8 9.8 55 140-194 1052-1106(1106)
45 smart00326 SH3 Src homology 3 99.1 3.8E-10 8.3E-15 81.1 7.0 55 140-194 3-58 (58)
46 KOG1118|consensus 99.1 6.7E-11 1.5E-15 108.3 2.6 55 7-61 307-361 (366)
47 cd00174 SH3 Src homology 3 dom 99.0 6.8E-10 1.5E-14 78.5 6.2 51 142-192 2-53 (54)
48 smart00326 SH3 Src homology 3 99.0 8.6E-10 1.9E-14 79.2 6.2 53 7-59 3-56 (58)
49 cd00174 SH3 Src homology 3 dom 99.0 8.6E-10 1.9E-14 78.0 5.9 52 8-59 1-53 (54)
50 KOG4225|consensus 99.0 7.3E-10 1.6E-14 106.5 6.3 62 136-197 227-288 (489)
51 cd01222 PH_clg Clg (common-sit 98.9 6.6E-09 1.4E-13 81.9 7.6 57 452-514 2-58 (97)
52 KOG2856|consensus 98.9 4.7E-10 1E-14 105.1 0.7 54 7-60 415-470 (472)
53 KOG0162|consensus 98.9 1.5E-09 3.1E-14 110.3 3.7 55 6-60 1051-1105(1106)
54 cd01228 PH_BCR-related BCR (br 98.8 5.5E-09 1.2E-13 79.5 4.5 59 452-511 1-62 (96)
55 KOG4269|consensus 98.8 1.7E-09 3.8E-14 112.1 2.2 259 225-509 327-612 (1112)
56 cd01219 PH_FGD FGD (faciogenit 98.8 3.1E-08 6.7E-13 79.8 8.3 60 453-512 1-62 (101)
57 cd01221 PH_ephexin Ephexin Ple 98.8 3.6E-08 7.9E-13 80.7 8.4 62 452-515 1-71 (125)
58 KOG2856|consensus 98.8 1.1E-08 2.4E-13 96.1 6.0 55 140-194 415-471 (472)
59 cd01232 PH_TRIO Trio pleckstri 98.8 3E-08 6.5E-13 80.7 7.6 64 452-515 3-74 (114)
60 KOG4792|consensus 98.7 8.6E-09 1.9E-13 90.5 3.2 60 138-197 123-183 (293)
61 KOG1264|consensus 98.7 7.9E-09 1.7E-13 106.2 2.2 57 7-63 775-832 (1267)
62 KOG2546|consensus 98.6 5.4E-08 1.2E-12 93.5 5.5 57 139-195 423-479 (483)
63 KOG2546|consensus 98.5 3.2E-08 6.9E-13 95.1 2.4 54 7-60 424-477 (483)
64 cd01226 PH_exo84 Exocyst compl 98.5 3.1E-07 6.7E-12 72.0 7.2 61 453-515 1-63 (100)
65 KOG1264|consensus 98.5 3.9E-08 8.4E-13 101.2 2.3 59 139-197 774-833 (1267)
66 KOG0515|consensus 98.5 7.3E-08 1.6E-12 94.9 2.3 56 141-196 685-743 (752)
67 KOG3655|consensus 98.4 3E-07 6.6E-12 90.1 6.2 57 138-194 426-483 (484)
68 cd01227 PH_Dbs Dbs (DBL's big 98.4 7E-07 1.5E-11 74.4 7.2 64 452-515 1-80 (133)
69 KOG1702|consensus 98.4 2.2E-07 4.9E-12 80.3 3.4 57 138-194 206-264 (264)
70 KOG0515|consensus 98.3 2E-07 4.3E-12 91.9 2.1 51 8-58 685-738 (752)
71 KOG3601|consensus 98.3 3.1E-07 6.7E-12 80.6 2.0 55 5-59 162-216 (222)
72 KOG1843|consensus 98.3 3.9E-07 8.3E-12 87.3 2.4 52 8-59 418-471 (473)
73 KOG1843|consensus 98.1 1.1E-06 2.3E-11 84.3 2.4 55 139-193 416-472 (473)
74 KOG3655|consensus 98.1 7.4E-07 1.6E-11 87.4 0.9 54 7-60 428-482 (484)
75 KOG1702|consensus 98.1 2.8E-06 6.1E-11 73.6 3.2 55 5-59 206-262 (264)
76 KOG3875|consensus 98.1 6.4E-07 1.4E-11 82.8 -0.8 58 139-196 268-332 (362)
77 cd01223 PH_Vav Vav pleckstrin 97.9 1.4E-05 3E-10 64.3 5.0 60 452-511 2-64 (116)
78 KOG0931|consensus 97.9 6.7E-05 1.4E-09 73.2 10.4 134 370-509 339-479 (627)
79 KOG3875|consensus 97.9 1.1E-06 2.5E-11 81.1 -1.7 55 7-61 269-330 (362)
80 KOG3523|consensus 97.7 2.6E-06 5.6E-11 85.8 -2.6 59 139-197 608-668 (695)
81 KOG2222|consensus 97.7 5.8E-06 1.2E-10 80.8 -1.5 58 139-196 548-605 (848)
82 PF15405 PH_5: Pleckstrin homo 97.6 4.2E-05 9.1E-10 64.7 3.4 61 454-514 1-64 (135)
83 KOG2222|consensus 97.6 1.1E-05 2.4E-10 78.8 -0.4 52 8-59 550-601 (848)
84 KOG3725|consensus 97.6 2.8E-05 6.1E-10 70.0 1.4 56 139-194 317-374 (375)
85 cd01225 PH_Cool_Pix Cool (clon 97.6 0.00045 9.8E-09 54.8 7.9 73 442-516 1-74 (111)
86 KOG3771|consensus 97.5 0.00014 2.9E-09 72.1 5.8 58 136-193 397-455 (460)
87 KOG4773|consensus 97.5 1.4E-05 3.1E-10 75.3 -1.0 55 8-62 177-231 (386)
88 KOG4278|consensus 97.5 8E-05 1.7E-09 76.0 4.2 62 136-198 87-150 (1157)
89 KOG3632|consensus 97.5 0.0002 4.2E-09 76.2 6.6 62 137-198 1136-1206(1335)
90 KOG1451|consensus 97.4 0.00061 1.3E-08 68.8 8.3 56 139-194 756-812 (812)
91 KOG3771|consensus 97.3 9.1E-05 2E-09 73.3 1.6 56 4-59 398-454 (460)
92 KOG4429|consensus 97.3 6.6E-05 1.4E-09 69.0 0.5 54 7-60 364-417 (421)
93 KOG0197|consensus 97.2 0.00016 3.6E-09 72.7 2.7 77 3-79 8-87 (468)
94 KOG4278|consensus 97.2 0.00032 6.9E-09 71.8 4.2 53 7-59 91-144 (1157)
95 KOG2528|consensus 97.2 0.00012 2.7E-09 71.4 1.1 56 141-196 4-61 (490)
96 KOG4429|consensus 97.1 0.00012 2.6E-09 67.3 0.4 55 140-194 364-418 (421)
97 KOG0609|consensus 97.1 0.0002 4.3E-09 72.1 1.8 50 6-55 214-275 (542)
98 KOG4773|consensus 97.0 8.8E-05 1.9E-09 70.1 -2.2 57 140-196 176-232 (386)
99 cd01229 PH_etc2 Epithelial cel 96.9 0.0009 2E-08 53.1 3.2 68 448-515 2-85 (129)
100 PF15411 PH_10: Pleckstrin hom 96.8 0.0033 7.1E-08 51.6 5.9 54 452-506 5-73 (116)
101 KOG4575|consensus 96.8 0.0011 2.5E-08 67.3 3.7 51 7-58 9-62 (874)
102 KOG3775|consensus 96.7 0.00074 1.6E-08 64.5 1.9 59 140-198 263-323 (482)
103 KOG0609|consensus 96.7 0.00093 2E-08 67.4 2.3 54 139-192 214-279 (542)
104 KOG3557|consensus 96.6 0.00065 1.4E-08 69.5 1.0 61 138-199 499-560 (721)
105 KOG2528|consensus 96.6 0.0011 2.3E-08 65.0 2.4 56 7-62 3-60 (490)
106 KOG0197|consensus 96.5 0.00084 1.8E-08 67.8 1.0 56 139-194 11-69 (468)
107 KOG4575|consensus 96.5 0.0031 6.6E-08 64.4 4.5 56 138-194 7-65 (874)
108 KOG3565|consensus 96.1 0.0015 3.2E-08 69.3 0.0 59 137-195 576-637 (640)
109 KOG3524|consensus 95.8 0.031 6.6E-07 58.2 8.0 182 229-429 393-578 (850)
110 KOG1451|consensus 95.7 0.0074 1.6E-07 61.3 3.0 53 7-59 757-810 (812)
111 KOG3725|consensus 95.7 0.0022 4.7E-08 58.1 -0.6 51 6-56 317-369 (375)
112 PF00169 PH: PH domain; Inter 95.5 0.06 1.3E-06 42.8 7.4 60 454-514 1-61 (104)
113 KOG3775|consensus 95.4 0.0079 1.7E-07 57.7 1.9 55 9-63 265-321 (482)
114 KOG3557|consensus 95.3 0.0052 1.1E-07 63.1 0.4 54 7-61 501-555 (721)
115 smart00233 PH Pleckstrin homol 94.8 0.12 2.5E-06 40.5 6.8 59 455-514 2-62 (102)
116 PF14603 hSH3: Helically-exten 94.2 0.048 1.1E-06 41.2 3.0 43 152-194 29-72 (89)
117 KOG0199|consensus 93.9 0.049 1.1E-06 57.3 3.4 51 9-59 377-430 (1039)
118 PF08239 SH3_3: Bacterial SH3 93.5 0.14 2.9E-06 35.8 4.2 35 158-192 19-55 (55)
119 KOG3522|consensus 91.2 0.37 8E-06 51.7 5.6 94 224-320 8-102 (925)
120 smart00287 SH3b Bacterial SH3 91.2 0.37 8.1E-06 34.5 4.2 35 157-191 26-61 (63)
121 KOG0199|consensus 91.0 0.22 4.8E-06 52.7 3.7 51 143-193 378-431 (1039)
122 KOG3565|consensus 90.6 0.062 1.3E-06 57.3 -0.7 56 5-60 577-635 (640)
123 cd00821 PH Pleckstrin homology 89.3 0.66 1.4E-05 35.6 4.5 57 457-514 2-60 (96)
124 KOG1729|consensus 89.2 0.052 1.1E-06 51.8 -2.3 76 434-512 27-102 (288)
125 KOG3705|consensus 88.8 0.33 7.1E-06 47.5 2.8 53 9-61 512-566 (580)
126 PRK10884 SH3 domain-containing 87.8 0.5 1.1E-05 43.1 3.1 38 157-194 49-88 (206)
127 KOG3812|consensus 87.7 0.29 6.3E-06 46.7 1.6 48 8-55 60-117 (475)
128 KOG3812|consensus 87.5 0.27 5.7E-06 47.0 1.2 48 142-189 61-118 (475)
129 KOG0040|consensus 86.8 0.019 4.1E-07 64.3 -7.6 58 140-197 969-1026(2399)
130 smart00287 SH3b Bacterial SH3 86.4 1.6 3.5E-05 31.1 4.7 36 24-59 26-62 (63)
131 cd00900 PH-like Pleckstrin hom 85.3 4.2 9.1E-05 31.2 7.1 43 468-513 18-60 (99)
132 PF06347 SH3_4: Bacterial SH3 83.8 2.2 4.9E-05 29.6 4.3 35 156-191 19-53 (55)
133 PF11302 DUF3104: Protein of u 82.2 1.6 3.5E-05 32.2 3.0 24 23-46 4-33 (75)
134 smart00743 Agenet Tudor-like d 81.7 1.8 3.9E-05 30.8 3.2 24 24-47 2-25 (61)
135 cd01256 PH_dynamin Dynamin ple 81.7 5.8 0.00013 31.1 5.9 56 455-514 2-60 (110)
136 PF08239 SH3_3: Bacterial SH3 81.7 3.6 7.8E-05 28.4 4.7 35 24-58 18-54 (55)
137 PF14603 hSH3: Helically-exten 80.8 3.2 7E-05 31.6 4.2 37 19-55 29-66 (89)
138 KOG3705|consensus 79.2 1.9 4.2E-05 42.3 3.3 54 140-193 510-565 (580)
139 KOG4384|consensus 78.8 17 0.00037 35.5 9.5 62 142-203 139-202 (361)
140 cd01246 PH_oxysterol_bp Oxyste 74.7 15 0.00032 28.1 6.8 52 456-509 1-53 (91)
141 cd01233 Unc104 Unc-104 pleckst 72.1 19 0.00041 28.6 6.9 56 454-513 2-58 (100)
142 PRK13914 invasion associated s 70.9 5.5 0.00012 41.0 4.3 37 157-193 104-141 (481)
143 cd01255 PH_TIAM TIAM Pleckstri 69.9 8.6 0.00019 32.2 4.4 61 452-512 25-107 (160)
144 KOG0040|consensus 69.4 0.17 3.6E-06 57.3 -7.1 54 9-62 971-1024(2399)
145 cd01260 PH_CNK Connector enhan 69.4 18 0.0004 28.2 6.3 53 456-512 2-59 (96)
146 KOG0930|consensus 68.2 9.1 0.0002 35.9 4.7 106 398-514 203-318 (395)
147 smart00743 Agenet Tudor-like d 67.5 7.2 0.00016 27.6 3.2 23 157-179 2-24 (61)
148 cd01252 PH_cytohesin Cytohesin 65.3 32 0.0007 28.4 7.3 53 456-512 2-55 (125)
149 COG3103 SH3 domain protein [Si 64.2 8.9 0.00019 34.8 3.8 39 157-195 49-89 (205)
150 PF11302 DUF3104: Protein of u 63.1 9.2 0.0002 28.3 3.0 23 156-178 4-32 (75)
151 PRK10884 SH3 domain-containing 62.8 10 0.00022 34.7 3.9 36 24-59 49-86 (206)
152 COG3103 SH3 domain protein [Si 62.6 13 0.00027 33.9 4.5 38 158-195 116-153 (205)
153 PF12210 Hrs_helical: Hepatocy 62.6 33 0.00071 26.8 6.0 50 244-296 2-55 (96)
154 cd01247 PH_GPBP Goodpasture an 59.5 39 0.00085 26.2 6.3 53 457-511 2-55 (91)
155 PF14593 PH_3: PH domain; PDB: 59.3 72 0.0016 25.6 7.8 59 447-511 6-66 (104)
156 PF00611 FCH: Fes/CIP4, and EF 58.8 56 0.0012 24.9 7.2 63 231-293 28-91 (91)
157 PF06347 SH3_4: Bacterial SH3 55.2 34 0.00074 23.5 4.8 33 23-56 19-51 (55)
158 KOG4384|consensus 52.0 7.6 0.00017 37.8 1.3 53 9-61 139-193 (361)
159 cd01238 PH_Tec Tec pleckstrin 49.9 51 0.0011 26.4 5.7 53 455-509 1-59 (106)
160 cd01235 PH_SETbf Set binding f 46.8 79 0.0017 24.7 6.4 50 456-509 1-53 (101)
161 PRK13914 invasion associated s 43.8 36 0.00078 35.2 4.8 37 24-60 104-141 (481)
162 PF05641 Agenet: Agenet domain 42.3 24 0.00052 25.7 2.5 22 25-46 1-25 (68)
163 cd01250 PH_centaurin Centaurin 42.2 1.1E+02 0.0023 23.3 6.5 56 456-513 1-58 (94)
164 cd01241 PH_Akt Akt pleckstrin 37.8 98 0.0021 24.5 5.6 49 455-507 2-52 (102)
165 smart00333 TUDOR Tudor domain. 30.3 82 0.0018 21.5 3.6 25 24-49 2-26 (57)
166 cd01257 PH_IRS Insulin recepto 29.5 2.4E+02 0.0052 22.4 6.5 57 454-513 2-66 (101)
167 cd07658 F-BAR_NOSTRIN The F-BA 28.5 3E+02 0.0064 25.8 8.0 63 233-296 26-88 (239)
168 PF12913 SH3_6: SH3 domain of 23.4 1.7E+02 0.0036 20.4 3.9 33 156-188 21-54 (54)
169 PRK13545 tagH teichoic acids e 23.3 85 0.0018 33.3 3.6 43 159-201 373-421 (549)
170 PF06017 Myosin_TH1: Myosin ta 22.9 3.8E+02 0.0083 24.2 7.5 54 453-506 49-103 (199)
171 cd01266 PH_Gab Gab (Grb2-assoc 21.9 2.2E+02 0.0047 22.7 5.1 37 470-510 20-63 (108)
No 1
>KOG2070|consensus
Probab=100.00 E-value=9.3e-47 Score=359.11 Aligned_cols=357 Identities=20% Similarity=0.340 Sum_probs=298.2
Q ss_pred ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHHHhhhcCCCcccc
Q psy824 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLR 217 (518)
Q Consensus 138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (518)
.+..++|-|.|...+.|||+|.+||+|+|.+..+.|||+|..+|+.||||++||..++... ++... .|...++.
T Consensus 16 ~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~-pLs~~-----~~~~~~~~ 89 (661)
T KOG2070|consen 16 NPLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEK-PLSPK-----SGTLKSPP 89 (661)
T ss_pred CceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcC-CCCcc-----ccCCCCCc
Confidence 3568999999999999999999999999999999999999999999999999999998443 33221 11111222
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q psy824 218 RRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL 297 (518)
Q Consensus 218 ~~~~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~ 297 (518)
+.. .+...+...|.-+++.+++||+.|++.|..+...|+.||+ .+.+++..++..|.+|+++|+.+|+.|+.+|+++.
T Consensus 90 k~~-~t~~~~~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq-~s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~ 167 (661)
T KOG2070|consen 90 KGF-DTTAINKSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQ-TSEILSSAEYSYLMGNFEEICTFQQDLVQQLEECT 167 (661)
T ss_pred ccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccchHHHHHHhcchHHhHhHHHHHHHHHHHhh
Confidence 221 2234467889999999999999999999999999999998 68899999999999999999999999999999998
Q ss_pred CCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcch
Q psy824 298 DWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP 377 (518)
Q Consensus 298 ~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~P 377 (518)
+... ..+++|.||+..++.++. +|..||.||+.|+..+.++.+++.+|++..-. ...+...|..=|.+|
T Consensus 168 ~~~~-~q~RVGg~fln~ap~mkt--------~~~aYcanHP~AV~VL~k~~dELek~me~Qga--sspg~lvLttgLSkP 236 (661)
T KOG2070|consen 168 KLPE-AQQRVGGCFLNLAPQMKT--------LYLAYCANHPSAVNVLTKHSDELEKFMETQGA--SSPGILVLTTGLSKP 236 (661)
T ss_pred cCch-hhhhhhhHHHhhhHHHHH--------HHHHHHhcCchhhhHHHHhHHHHHHHHHhcCC--CCCCeEEEecccchH
Confidence 6443 367999999999996654 79999999999999999999999999886432 333443466778899
Q ss_pred hhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHhcccCCCccccccccceEe
Q psy824 378 AAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME-SLEKLAAWQQRVEGWEGEDLIETSSQLIH 456 (518)
Q Consensus 378 vQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e-~~~~l~~~~~~i~~~~~~~l~~~~r~ll~ 456 (518)
.-|+=||+-||++|.++.+..|||+.+++++...++++...+.+..++.| .++.|. ..|.+|.+.++... +.+|+
T Consensus 237 frrldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEleLqiLt---~~i~~w~g~d~s~l-G~iiy 312 (661)
T KOG2070|consen 237 FRRLDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQKELELQILT---EPIRNWEGDDISTL-GNIIY 312 (661)
T ss_pred HHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc---ccccccccchhhhc-cceEe
Confidence 99999999999999999999999999999999999999999988544433 344443 68889999877775 78999
Q ss_pred eeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCCCCC
Q psy824 457 QGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD 518 (518)
Q Consensus 457 ~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~ 518 (518)
.|.+.+...+...++||+.||.+.|++.... .....|+|.+.+|+..+.|+..+|.+++.+
T Consensus 313 mg~v~Vqy~~ad~~dRy~~LF~~~llflsvs-~rMs~fIyegKlp~tG~iV~klEdte~~~n 373 (661)
T KOG2070|consen 313 MGQVLVQYAGADEKDRYLLLFPNVLLFLSVS-PRMSGFIYEGKLPTTGMIVTKLEDTENHRN 373 (661)
T ss_pred eeehhhhhcCcchhhheeeeccceeeeeEec-cccchhhhccccccceeEEeehhhhhcccc
Confidence 9999887777666799999999999999743 223568888999999999999999988753
No 2
>KOG4424|consensus
Probab=100.00 E-value=3.4e-42 Score=336.12 Aligned_cols=264 Identities=23% Similarity=0.311 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCCCCCCc
Q psy824 228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPYKSC 306 (518)
Q Consensus 228 ~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~~~~~ 306 (518)
.+++..+++||+.||+.||..|..+.++|..+|.. ...++.+.+..||+||..|+.+|.. ||..|+.+.
T Consensus 64 ~qk~~~iaqEll~tE~~Yv~~L~lLd~~F~~~L~~-~~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~--------- 133 (623)
T KOG4424|consen 64 LQKLRHIAQELLDTERTYVKRLHLLDQVFCRRLLE-EASIPADVITGLFGNISSIHNFHGQFLLPELEKRI--------- 133 (623)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH---------
Confidence 68899999999999999999999999999999973 3489999999999999999999976 566776653
Q ss_pred hHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHH
Q psy824 307 IGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELA 383 (518)
Q Consensus 307 ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~ 383 (518)
||++|.+++|+|++ |+.|..||++|+. .+..+++.|++++..++..+.|.++. |.++||.|||||+|
T Consensus 134 Iadv~qKlAPFLKm---------YseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~-LqhhMiePVQRIPR 203 (623)
T KOG4424|consen 134 IADVFQKLAPFLKM---------YSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLK-LQHHMIEPVQRVPR 203 (623)
T ss_pred HHHHHHHhhhHHHH---------HHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCcc-chhheechhhhhhH
Confidence 99999999999998 9999999999964 56777899999999999999999877 99999999999999
Q ss_pred HHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEEE
Q psy824 384 RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463 (518)
Q Consensus 384 y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~ 463 (518)
|.|||+++++++|++.+|+.++++|++.|...++++|++++++|+.++|.++|.++.+ ..+|+.|+|.||++|.+.++
T Consensus 204 YeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~--e~dIV~PsreLiKEG~l~Ki 281 (623)
T KOG4424|consen 204 YELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGN--EEDIVSPSRELIKEGQLQKI 281 (623)
T ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CccccCcHHHHhhccceeee
Confidence 9999999999999999999999999999999999999999999999999999999987 36799999999999999999
Q ss_pred ecCc-ccceEEEEEeCCeEEEEeecc-CCCCceEEEEEeecCCeeEEEcCCC
Q psy824 464 TSGM-WTNTITLFLFDHQLVYCKRDI-LKRNTHVYKARLNIDTSQIINLPDG 513 (518)
Q Consensus 464 ~~~~-~~~~~~~fLF~d~ll~~k~~~-~~~~~~~~k~~i~l~~~~v~~~~d~ 513 (518)
+.+. ...+||||||||++++|+++. ....+|..+..+.+.++.|.+...+
T Consensus 282 s~k~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~~~ 333 (623)
T KOG4424|consen 282 SAKNGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDDNE 333 (623)
T ss_pred eccCCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccccc
Confidence 8874 367999999999999999654 4457899999999999999876655
No 3
>KOG3523|consensus
Probab=100.00 E-value=9.5e-37 Score=298.73 Aligned_cols=277 Identities=18% Similarity=0.203 Sum_probs=244.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy824 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP 302 (518)
Q Consensus 223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~ 302 (518)
.+...++++|++++|+|.+|..|++.|++++..|+..-. -...++..+.+.||+||.++..++..||.+|+.++.. ..
T Consensus 250 tls~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~-l~~~Ls~~d~~~LFSni~~V~~~Serfl~dLE~r~e~-ni 327 (695)
T KOG3523|consen 250 TLSPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKE-LRSTLSASDRHHLFSNIQDVREVSERFLCDLEARLEE-NI 327 (695)
T ss_pred ccCHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHH-HHHhcChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-Cc
Confidence 366789999999999999999999999999999987643 4578999999999999999999999999999999964 34
Q ss_pred CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhh---HHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhh
Q psy824 303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKD---KWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA 379 (518)
Q Consensus 303 ~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~---~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQ 379 (518)
....|++|..+|++.+.. .|..||.|+. +.+..+...|..|...++.++..+.|.+++ |.+|||.|||
T Consensus 328 ~i~dicDiv~~ha~~~f~--------vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lp-l~SFLiLPmQ 398 (695)
T KOG3523|consen 328 FIDDICDIVEDHAAKHFS--------VYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLP-LRSFLILPMQ 398 (695)
T ss_pred hhhHHHHHHHHhcccccc--------eeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCC-chhhhhchHH
Confidence 578899999999887433 2778888854 446678888999999999999999999987 9999999999
Q ss_pred HHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc--CCCccccccccceEee
Q psy824 380 KELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG--WEGEDLIETSSQLIHQ 457 (518)
Q Consensus 380 Rl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~--~~~~~l~~~~r~ll~~ 457 (518)
||+|++|||+.|++.|++..++|+..++|+.++++++..+|+..++++....|..|+++|+- .+.++|+...|.|++.
T Consensus 399 RITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~kvK~~PLiS~sRwLvk~ 478 (695)
T KOG3523|consen 399 RITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFKKVKAFPLVSQSRWLVKR 478 (695)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeeeccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999973 3457899999999999
Q ss_pred eeEEEEecCc---------ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824 458 GEVIRVTSGM---------WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD 512 (518)
Q Consensus 458 g~l~~~~~~~---------~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d 512 (518)
|+|+...... ..+.+|+|||||+||+||++. ..+|.+...-+.+.++|.+++.
T Consensus 479 GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~Llitk~k~--~~~f~V~Dya~r~~l~ve~~e~ 540 (695)
T KOG3523|consen 479 GELTQLVERRASPLLFSKRLSKTVYLFLFNDLLLITKKKS--EGSFQVFDYAPRSLLQVEKCEP 540 (695)
T ss_pred cccceeecccccchhhcccccceeeeeeecceeeEeeecC--CCceEEeeccchhhhhhhhcCc
Confidence 9997664322 245899999999999999884 6789999999999999988874
No 4
>KOG2996|consensus
Probab=100.00 E-value=3.4e-36 Score=292.17 Aligned_cols=267 Identities=20% Similarity=0.286 Sum_probs=230.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q psy824 226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKS 305 (518)
Q Consensus 226 ~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~ 305 (518)
+...||.+.+.||-+||.+|++.|..|.+.|+.||+ ..+++.++..||.||++|..+|..||.+|+..+...+ .+
T Consensus 193 te~dkRncClrEi~~TE~kY~~tL~sI~k~f~~PLk---~~l~~ad~~ivFiNieel~klHt~ll~ei~~sv~v~~--~q 267 (865)
T KOG2996|consen 193 TETDKRNCCLREIQQTEEKYTQTLESIEKTFMEPLK---RFLPPADYNIVFINIEELNKLHTALLAEIEYSVKVAG--GQ 267 (865)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCChhhhheeEecHHHHHHHHHHHHHHhHHHhhCCC--cc
Confidence 456899999999999999999999999999999997 6999999999999999999999999999999986443 48
Q ss_pred chHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHH---HHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHH
Q psy824 306 CIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL---LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKEL 382 (518)
Q Consensus 306 ~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~---~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~ 382 (518)
.++++|+++.+.|-+ |..||++.+.|. ..+.+.++.+..-++.|....+.... .|.++|+.||||++
T Consensus 268 tl~qVFikyker~li---------YG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~nngkF-~l~DLL~VPmQRvl 337 (865)
T KOG2996|consen 268 TLYQVFIKYKERLLI---------YGKYCSNVESARKLLNELLKTREDVSRKLEECTARANNGKF-TLRDLLVVPMQRVL 337 (865)
T ss_pred cHHHHHHHHHHHHhh---------hhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCce-eeceeeeeeHHHHH
Confidence 899999999999987 999999999884 46677888888888888875444444 49999999999999
Q ss_pred HHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEE
Q psy824 383 ARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIR 462 (518)
Q Consensus 383 ~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~ 462 (518)
+|+|||++|.|+|.... +...|+.|+++|+.++.+||+.+|..|.+..+.++|.+|++.. .+|...|| .--.|++..
T Consensus 338 KYhLLLkEL~kht~~a~-ek~~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIenL~-~pl~~~GR-pkiDGElki 414 (865)
T KOG2996|consen 338 KYHLLLKELVKHTDEAS-EKRNLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIENLS-QPLHDFGR-PKIDGELKI 414 (865)
T ss_pred HHHHHHHHHHHhcccCC-hhhhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHhhc-chHHHhCC-CCcCceEEE
Confidence 99999999999998544 4559999999999999999999999999999999999999875 35666654 455788765
Q ss_pred EecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824 463 VTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 513 (518)
Q Consensus 463 ~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~ 513 (518)
.+.. ..+++||+|||+.++|+||++ +..|..+..|.++...+.+.+-+
T Consensus 415 ~s~~~~tkqdRyiFLfDkvviVCKrk---G~sy~lke~i~l~~y~m~d~~~~ 463 (865)
T KOG2996|consen 415 TSTQAHTKQDRYIFLFDKVVIVCKRK---GDSYELKEIIYLNAYKMSDDPID 463 (865)
T ss_pred eehhcCCccceEEeEecceEEEeecc---CcchhHHHHHHHHhhccccCCCC
Confidence 5443 346799999999999999998 77888888888888888776544
No 5
>KOG4305|consensus
Probab=100.00 E-value=2.3e-36 Score=318.35 Aligned_cols=338 Identities=18% Similarity=0.185 Sum_probs=268.4
Q ss_pred EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHHHhhhcCCCccccccc
Q psy824 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRT 220 (518)
Q Consensus 141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (518)
.+++.+++.+. ++.-+-.+..-......||.++.+|..+.+|. .....+.+ ........
T Consensus 267 l~~cys~t~~~-----s~~cysiscp~~leq~~~~~~k~~~~~~~~~s------~d~~~~~W----------~~s~d~~~ 325 (1029)
T KOG4305|consen 267 LLRCYSNTCSR-----SLLCYSISCPRRLEQQARLELKLSSGLKRSSS------EDEEEKLW----------SESVDLSV 325 (1029)
T ss_pred eeeeechhhhh-----hhhcccccCccccccchhhhhccchhhcCCCC------ccccchhh----------hhcCchHh
Confidence 34444555443 55556666666666788999998887777666 11111111 11122222
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH----HHHHhcCHHHHHHHHHHHHHHHHHh
Q psy824 221 SISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQ----IQTIFGNLEDILAFQSSFLEDLETK 296 (518)
Q Consensus 221 ~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~----~~~lF~ni~~i~~~h~~~l~~L~~~ 296 (518)
..++..+|.|||++|.||+.||++||++|+.+.+.|+.||. .+.++++++ +..+|.|+++|+.+|..||.+|..+
T Consensus 326 le~ls~rEikRQe~I~Eli~tE~d~v~dLel~re~y~kpl~-~S~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r 404 (1029)
T KOG4305|consen 326 LESLSPREIKRQEAIFELIYTEEDFVADLELAREIYRKPLL-ESSIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVR 404 (1029)
T ss_pred HhhcCHHHhhhhheeEEEEeehhHHHHHHHHHHHHHhChHh-hhccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34577899999999999999999999999999999999997 458899888 9999999999999999999999999
Q ss_pred hCCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHH---HHHhhcchHHHHHHHHHHHhhccccccCccCC
Q psy824 297 LDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL---LFCCRSLEDKARWLAAFQQERALVEQDREDGL 373 (518)
Q Consensus 297 ~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~---~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~ 373 (518)
....+ .+..||++|+.+++.|+. |-.||+++..|- ...++.+..|++|++.|+..+.+.+.. |.+|
T Consensus 405 ~k~~G-~V~~IGdIll~~lp~~~~---------yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp~~rkl~-L~~F 473 (1029)
T KOG4305|consen 405 QKLSG-VVEGIGDILLAWLPKAEP---------YISYGANQAYAKALIEQKKKQNPRFARFLKECESSPESRKLD-LVSF 473 (1029)
T ss_pred hccCC-ccchHHHHHHHHhhhhhH---------HHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhChhhhccc-hhhh
Confidence 87655 789999999999999998 677888877663 334577899999999999999999885 9999
Q ss_pred CcchhhHHHHHHHhhhhccCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCC-C----ccc
Q psy824 374 EFAPAAKELARMSAARCHSSRP-PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWE-G----EDL 447 (518)
Q Consensus 374 L~~PvQRl~~y~LlL~~l~k~t-~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~-~----~~l 447 (518)
|.+|+||+.||||||++|+|+| |.+|+|++.|.+|++.++.++.++|...++.|+..++.+++.++- ++ + .-+
T Consensus 474 L~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qll-fe~~e~~~L~l 552 (1029)
T KOG4305|consen 474 LTKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLL-FEPGEAVNLGL 552 (1029)
T ss_pred hccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhh-ccccccccccc
Confidence 9999999999999999999999 888999999999999999999999999999999999999999985 33 2 235
Q ss_pred cccccceEeeeeEEEEecCcc--cceEEEEEeCCeEEEEeeccC---CCCceEEEEEeecCCeeEEEcCC
Q psy824 448 IETSSQLIHQGEVIRVTSGMW--TNTITLFLFDHQLVYCKRDIL---KRNTHVYKARLNIDTSQIINLPD 512 (518)
Q Consensus 448 ~~~~r~ll~~g~l~~~~~~~~--~~~~~~fLF~d~ll~~k~~~~---~~~~~~~k~~i~l~~~~v~~~~d 512 (518)
..+.|+|+..|.|.+....+. .+.-+.|||+|.+|++++... .....++..+|||+-+.+....|
T Consensus 553 ~d~~R~l~fkgil~~~~~~~~~~~~~~~~fLl~d~lLLt~~~k~~~~~~~~kvf~RPiPl~lL~~~~~~d 622 (1029)
T KOG4305|consen 553 NDPERKLIFKGILKRKELSKTDGTKEDYIFLLLDNLLLTRKVKQNNKRHRHKVFSRPIPLDLLSLSPSED 622 (1029)
T ss_pred cChhhhcceeeeeeeccccccCCCccceeehhhhhhhhhhhhhhccccccceeeccCcchhhhccccccc
Confidence 556799999998876544322 223489999999998874321 22456778899998887764443
No 6
>KOG3520|consensus
Probab=100.00 E-value=1.2e-35 Score=313.80 Aligned_cols=292 Identities=16% Similarity=0.221 Sum_probs=251.6
Q ss_pred CCCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHH
Q psy824 211 GGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290 (518)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l 290 (518)
++....+.+....+...+.|||++|.||+.||+.+|+.|++|..+|..+|. ...+++..++..||.|+++|+++|..|+
T Consensus 371 sWs~~V~~e~L~~lk~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~m~-~e~~~~~~~l~~LFP~LdeL~eiH~~f~ 449 (1167)
T KOG3520|consen 371 SWSEAVPSEVLKGLKKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQPMM-EELLFPQEELNKLFPCLDELIEIHSSFL 449 (1167)
T ss_pred chhhccCHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCHHHHHHhcccHHHHHHHHHHHH
Confidence 344444555555677788999999999999999999999999999999998 6889999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccc
Q psy824 291 EDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQ 367 (518)
Q Consensus 291 ~~L~~~~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~ 367 (518)
+.|.++...+......||++++.+ |.--..-.+++.|..||+++..|+.. +.++.+.|..|++.+...+.|.++
T Consensus 450 ~~lk~rr~e~~~vI~~IGDlLl~~---FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p~cRRL 526 (1167)
T KOG3520|consen 450 QRLKERRKESLVVIKRIGDLLLDQ---FSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNPVCRRL 526 (1167)
T ss_pred HHHHHHHHhccchHHHHHHHHHHH---cCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcchHHHhh
Confidence 999998865554578999999988 44445567888999999999999753 456789999999999999999988
Q ss_pred cCccCCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc------
Q psy824 368 DREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG------ 441 (518)
Q Consensus 368 ~~l~~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~------ 441 (518)
. |.++++.-+|||+||||||+.|+|||..+..|+++|+.|++.+++|+..||+.++..|+.++|.+||++++.
T Consensus 527 ~-lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~s~~~~ 605 (1167)
T KOG3520|consen 527 G-LKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAKSLSKY 605 (1167)
T ss_pred c-chHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhc
Confidence 7 999999999999999999999999999899999999999999999999999999999999999999999972
Q ss_pred -----CCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEE------EeecCCeeEEEc
Q psy824 442 -----WEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKA------RLNIDTSQIINL 510 (518)
Q Consensus 442 -----~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~------~i~l~~~~v~~~ 510 (518)
|...+|. .|+|||+|.|+......+.++++++||.|+||+..++ ..+|+|+. .|+|..+.|+++
T Consensus 606 ~~~~~F~kldLt--~rkLihdG~Ltwk~~~gk~~dv~vlLLtD~LvlLqeq---D~Kyifksl~~~spVisL~~livRev 680 (1167)
T KOG3520|consen 606 KNGEEFRKLDLT--RRKLIHDGPLTWKTARGKTKDVHVLLLTDILVLLQEK---DQKYIFKSLDKKSPVISLQKLIVREV 680 (1167)
T ss_pred cccchhhhhhhh--hhheeccCceEEeeccCchhhhHHHHHHHHHHHhhhc---CceeEeeccccCCCceehHHHHHHHH
Confidence 2223344 4899999999877666567899999999999999887 56888875 477777766655
Q ss_pred CC
Q psy824 511 PD 512 (518)
Q Consensus 511 ~d 512 (518)
-.
T Consensus 681 At 682 (1167)
T KOG3520|consen 681 AT 682 (1167)
T ss_pred hc
Confidence 43
No 7
>KOG3518|consensus
Probab=100.00 E-value=5.6e-34 Score=260.19 Aligned_cols=258 Identities=23% Similarity=0.340 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCch
Q psy824 230 VRSRVVRELINTERDFVKVLHDVSEGYLAECRR--RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCI 307 (518)
Q Consensus 230 kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~--~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~i 307 (518)
.-.+|+.||++||++||++|+.+++.|+.-++. .+-.+.-+.+..||++|+.|+.++..++.+|+.+-. + .-.|
T Consensus 121 ~ldriaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaadl--d--~v~i 196 (521)
T KOG3518|consen 121 HLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAADL--D--CVAI 196 (521)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhccc--c--hHHH
Confidence 356789999999999999999999999998863 234577899999999999999999999999998743 1 3568
Q ss_pred HHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH--HHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHH
Q psy824 308 GETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL--FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARM 385 (518)
Q Consensus 308 g~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~--~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~ 385 (518)
+.||+.....|.. |..||.||++.+. ..|..++-..++++.-+. .++...+|.+||++|||||++|.
T Consensus 197 a~cfve~s~efe~---------yieyctny~rmmatl~~~~q~~ilaka~qerq~--al~hsl~l~ayllkpvqrilkyh 265 (521)
T KOG3518|consen 197 AECFVEKSEEFED---------YIEYCTNYHRMMATLTECMQNKILAKAFQERQE--ALKHSLPLGAYLLKPVQRILKYH 265 (521)
T ss_pred HHHHHhcchhHHH---------HHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHHHH
Confidence 9999999999988 8999999998754 456777878777765443 34444559999999999999999
Q ss_pred HhhhhccCCCCCC-CC-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCcc-----ccccccceEeee
Q psy824 386 SAARCHSSRPPTD-HP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGED-----LIETSSQLIHQG 458 (518)
Q Consensus 386 LlL~~l~k~t~~~-~~-d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~-----l~~~~r~ll~~g 458 (518)
|+|.+|.|+.+.+ || ++..+..|.+.|...+.+||+++++.|...++-++|+.+.+|++.. |... +.|+.+|
T Consensus 266 lfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqkwkadeiqi~dlsay-gdlllea 344 (521)
T KOG3518|consen 266 LFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQKWKADEIQIPDLSAY-GDLLLEA 344 (521)
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccCCchhhh-HHHHHHH
Confidence 9999999999975 55 6899999999999999999999999999999999999999999843 3333 6778888
Q ss_pred eEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEE
Q psy824 459 EVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIIN 509 (518)
Q Consensus 459 ~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~ 509 (518)
.+..... +..|.+|||+.+|+++|++ ...|++|..|--.++-+++
T Consensus 345 tfr~aga---k~~rllflfdellli~kkr---~anf~~k~~ilc~nlmlne 389 (521)
T KOG3518|consen 345 TFRIAGA---KNERLLFLFDELLLITKKR---DANFTCKAHILCGNLMLNE 389 (521)
T ss_pred HHHHhcc---cccchHHHHHhHHhheeec---CCceeeehhhhccchhhhe
Confidence 7655443 3488999999999999987 7889999988877766554
No 8
>KOG3521|consensus
Probab=100.00 E-value=5.3e-32 Score=267.02 Aligned_cols=279 Identities=19% Similarity=0.242 Sum_probs=231.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCHHHHHHHhcCHHHHHHHHHHH-HHHHHHhh--
Q psy824 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECR--RRNDMFSPEQIQTIFGNLEDILAFQSSF-LEDLETKL-- 297 (518)
Q Consensus 223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~--~~~~~l~~~~~~~lF~ni~~i~~~h~~~-l~~L~~~~-- 297 (518)
+++.++.+.|++|+||+.||-.||+.|..+.+.|..-|. ++.++|-+.+..+||+|+..|+++|..| +.-|.-.+
T Consensus 170 slS~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~~~l~P~lak 249 (846)
T KOG3521|consen 170 SLSDKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWLQVLEPILAK 249 (846)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999999999999876553 3789999999999999999999999997 34343333
Q ss_pred --CCCCC-CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCcc
Q psy824 298 --DWDAP-YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDRED 371 (518)
Q Consensus 298 --~~~~~-~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~ 371 (518)
....+ ....+-.-|+.|...|.+ |..||..+...+. .+.+.++-|..|+.+|+..+.|.++. |-
T Consensus 250 sr~TgepLd~~~lq~GFl~f~s~f~p---------Y~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~Rqk-L~ 319 (846)
T KOG3521|consen 250 SRETGEPLDPNYLQNGFLDFGSWFRP---------YTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQK-LI 319 (846)
T ss_pred HHhhCCCCChHHHHHHHHHHHHhhhH---------HHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHH-HH
Confidence 11111 123455679999999988 8888888776654 45667888999999999999999887 99
Q ss_pred CCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCc------
Q psy824 372 GLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE------ 445 (518)
Q Consensus 372 ~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~------ 445 (518)
+.|++|+||++||+|||+.++|.|+ +-.+.+.+...++.++..+.+||..++..+..++|..+-.+|+++.-.
T Consensus 320 D~l~kPmQRLTKY~LLLkAVlK~t~-d~~e~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rIe~ydvVd~~sde 398 (846)
T KOG3521|consen 320 DTLSKPMQRLTKYPLLLKAVLKVTT-DEREREAISAMIDSVESFTAHVNKELRQRQERERLAAVMRRIEGYDVVDQDSDE 398 (846)
T ss_pred HHhhhHHHHhhhhHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccCCcHHH
Confidence 9999999999999999999999998 667899999999999999999999999999999999999999876421
Q ss_pred ------------ccccc--------ccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC-CCCceEEEEEeecCC
Q psy824 446 ------------DLIET--------SSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL-KRNTHVYKARLNIDT 504 (518)
Q Consensus 446 ------------~l~~~--------~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~-~~~~~~~k~~i~l~~ 504 (518)
+|..+ .|+|+++|++.....+..+-++|||||+|+||+||+..+ .....+++.++-++.
T Consensus 399 vdknLK~~~~~~Dl~apm~g~~~~htRqLlleGdlrmKegk~sK~DVhcfLfTDllLVcK~v~k~~drlKVIRpPll~dk 478 (846)
T KOG3521|consen 399 VDKNLKLFLNLLDLTAPMHGRKPEHTRQLLLEGDLRMKEGKGSKADVHCFLFTDLLLVCKKVQKKADRLKVIRPPLLMDK 478 (846)
T ss_pred HHHHhhhhhhhhccccCCCCCChhhhhhhhhccceecccCCCcccceeeeeehhHHHHhHHHhhhcccceeeccchhhcc
Confidence 11111 299999999877766555679999999999999996544 446678899999999
Q ss_pred eeEEEcCC
Q psy824 505 SQIINLPD 512 (518)
Q Consensus 505 ~~v~~~~d 512 (518)
+.+...+|
T Consensus 479 lv~q~~~d 486 (846)
T KOG3521|consen 479 LVCQYLRD 486 (846)
T ss_pred eeeeecCC
Confidence 99998887
No 9
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.97 E-value=1.3e-30 Score=236.62 Aligned_cols=177 Identities=26% Similarity=0.379 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHH
Q psy824 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDM-FSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGE 309 (518)
Q Consensus 231 R~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~-l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~ 309 (518)
|+.+++||++||++||++|+.+.+.|..|+.. ... ++..++..||+|+++|+.+|+.|+..|+.+...+......+|+
T Consensus 1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~-~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~ 79 (181)
T cd00160 1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDK-ELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEWDKSGPRIGD 79 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCcccchHHH
Confidence 68999999999999999999999999999974 344 8999999999999999999999999999998543334578999
Q ss_pred HHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH---hhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHH
Q psy824 310 TFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC---CRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMS 386 (518)
Q Consensus 310 ~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~---~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~L 386 (518)
+|+++.+.|+. |..||.+++.+...+ .+.++.|.+|.+.++. ...+. ++.+||++||||++||+|
T Consensus 80 ~f~~~~~~~~~---------Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~--~~~~~-~l~~~L~~PvQRl~rY~l 147 (181)
T cd00160 80 VFLKLAPFFKI---------YSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES--ECGRL-KLESLLLKPVQRLTKYPL 147 (181)
T ss_pred HHHHhhhHHHH---------HHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH--hcccC-CHHHHhhhhHHHhchHHH
Confidence 99999996655 999999999886543 3457778888777765 33444 499999999999999999
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy824 387 AARCHSSRPPTDHPDYVKITEALEAMRDVAMLIN 420 (518)
Q Consensus 387 lL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn 420 (518)
||++|+|+||++|+|+..|+.|++.+++++.+||
T Consensus 148 LL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 148 LLKELLKHTPDGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999887
No 10
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.97 E-value=1e-30 Score=237.13 Aligned_cols=178 Identities=25% Similarity=0.414 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHh
Q psy824 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLK 313 (518)
Q Consensus 234 ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~~f~~ 313 (518)
||+||++||++||++|+.+.+.|..|+....+.++..++..||+|+++|+.+|+.|+.+|+++...+.+....+|++|++
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~ 80 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDDSPERIGDVFLK 80 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 58999999999999999999999999985433899999999999999999999999999999985432346899999999
Q ss_pred hhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHHhhhhc
Q psy824 314 HKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCH 391 (518)
Q Consensus 314 ~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~LlL~~l 391 (518)
+.+.|+. |..||.+++.+...+ +.+++.|..|++.+.....+.+.. |.+||++||||++||++||++|
T Consensus 81 ~~~~~~~---------Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~-l~~~L~~PvqRl~rY~lll~~l 150 (180)
T smart00325 81 LEEFFKI---------YSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLT-LESLLLKPVQRLTKYPLLLKEL 150 (180)
T ss_pred hhHHHHH---------HHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhCChhhccCC-HHHHHhHHHHHhccHHHHHHHH
Confidence 9776655 999999999886544 457889999999988766665444 9999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy824 392 SSRPPTDHPDYVKITEALEAMRDVAMLINE 421 (518)
Q Consensus 392 ~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~ 421 (518)
+|+|+++|+|+..|+.|++.++.++..||+
T Consensus 151 ~k~t~~~~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 151 LKHTPEDHEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999985
No 11
>KOG3519|consensus
Probab=99.96 E-value=1.1e-29 Score=273.00 Aligned_cols=359 Identities=30% Similarity=0.392 Sum_probs=285.2
Q ss_pred EEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHHHhhhcCCCccccccc-
Q psy824 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRT- 220 (518)
Q Consensus 142 ~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (518)
+.++++-......++.+.+++...+++.....||.+.. ..+++....+.+......+.. ...+.........
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~rl~i~~~~~~~~----~~~~~~~~~~~~~~ 321 (756)
T KOG3519|consen 249 APALKRVVRADMRELGLEKLDAKTVLDESVAEESSGRT---MTLFASESERLIINQKLELLS----APTGPVESAPSDYD 321 (756)
T ss_pred ccccccceecccccchhhhhhccccchhhhhhhhcccc---chhchhhhhcchhhhhhhccc----cccCcccCcccccc
Confidence 34445555666678899999999999888778887765 556666666554433211111 0111111110000
Q ss_pred -----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q psy824 221 -----SISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLET 295 (518)
Q Consensus 221 -----~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~ 295 (518)
.........+|.++|.|+++||++|+++|..++..|+.++.+....++.+.+..+|+||++|+.+|..|+..|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~ 401 (756)
T KOG3519|consen 322 GYLDAMRPSESLDKKRTKVIKELLDTEKNYVKDLNALCEGYLPPQNKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQ 401 (756)
T ss_pred hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 011234678899999999999999999999999999999766778999999999999999999999999999999
Q ss_pred hhCCC--CCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCcc
Q psy824 296 KLDWD--APYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDRED 371 (518)
Q Consensus 296 ~~~~~--~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~ 371 (518)
..+.. .+....||.+|+.+.+.|.. |..||++++.+...+ .+++++...|+..|......... +|+
T Consensus 402 ~~~~~~~~~~~~~ig~~fL~~~~~f~~---------ys~yc~~h~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~L~ 471 (756)
T KOG3519|consen 402 QINPELIPPSLSEIGPVFLEQLDVFKI---------YSEYCNNHPKAQKKLSKLKKKKKVKEFLEACNLLQQHSNS-SLS 471 (756)
T ss_pred hcchhhcchhHhHHHHHHHHhccccee---------echhhhccchHHHHHHHHhhhhhhhhhhhhhhhhhccccC-Cch
Confidence 98755 56678999999999999999 555999999986544 45668888999999887666654 499
Q ss_pred CCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHh---cccCCC
Q psy824 372 GLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMES----LEKLAAWQQR---VEGWEG 444 (518)
Q Consensus 372 ~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~----~~~l~~~~~~---i~~~~~ 444 (518)
+||++|+||+++|||+|+++++.|+.+|.||..+..|+.+++.++..||++++..+. ...+.+.+.. +.+|++
T Consensus 472 s~l~~pvqri~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q~~~~~~~~~~~ 551 (756)
T KOG3519|consen 472 SFLLKPVQRICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQSGSNSLELSEG 551 (756)
T ss_pred hhhccHHHHhccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhhccchhhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999 6677766666 778888
Q ss_pred ccccccccceEeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceE-EEEEeecCCeeEEEcCCCCCCC
Q psy824 445 EDLIETSSQLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHV-YKARLNIDTSQIINLPDGKGRT 517 (518)
Q Consensus 445 ~~l~~~~r~ll~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~-~k~~i~l~~~~v~~~~d~~~~~ 517 (518)
..+......++..|........ .+...++.|||+..+++|++..+.+..+. ++.....+.+.+.+.+++...+
T Consensus 552 ~~~~~~Ss~l~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (756)
T KOG3519|consen 552 ELLLDNSSELLLSGPSLKIRQFQSDSQQRQFFLFDNQLVYCKRSSTSRSLLPSFRPRLASDSVDPFDNDGTKPAD 626 (756)
T ss_pred CcccccccceeeccchhhhhhhhcchhhhhheecccceeEeeccccccccccccCccccccccccccccccCccc
Confidence 7777788899999997665442 23467899999999999998876666555 7888999999988888776654
No 12
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.95 E-value=4.6e-27 Score=213.12 Aligned_cols=177 Identities=25% Similarity=0.429 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHh
Q psy824 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLK 313 (518)
Q Consensus 234 ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~~f~~ 313 (518)
||+||++||+.|+.+|+.+.+.|..++....+.++..++..+|+|+++|+.+|+.|+..|+.... .......||++|++
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~-~~~~~~~i~~if~~ 79 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMK-EWSNIQSIGDIFLK 79 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTSSGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHH-hhhccchhhhhhhh
Confidence 68999999999999999999999999984368899999999999999999999999999999773 22457899999999
Q ss_pred hhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHHhhhh
Q psy824 314 HKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARC 390 (518)
Q Consensus 314 ~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~LlL~~ 390 (518)
+.+.+.. |..||.+++.+... +.+.+..+..|++.++......... +.++|+.|+||++||+++|++
T Consensus 80 ~~~~~~~---------Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-l~~~l~~Piqrl~rY~lll~~ 149 (180)
T PF00621_consen 80 FEPFLKV---------YISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLS-LSSLLIKPIQRLPRYPLLLKR 149 (180)
T ss_dssp HTTGGHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTST-HHHHTTHHHHHHHHHHHHHHH
T ss_pred ccccccc---------eeccchheechhhhhhHHHhhccccccccccccccccccCCC-HHHHHHHhhhHHHHHHHHHHH
Confidence 6664444 99999999887543 3445556888888887754555544 999999999999999999999
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy824 391 HSSRPPTDHPDYVKITEALEAMRDVAMLINE 421 (518)
Q Consensus 391 l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~ 421 (518)
|+++|+++|+|+..|+.|+..+++++..+|+
T Consensus 150 llk~t~~~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 150 LLKNTPPDHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp HHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999996
No 13
>KOG3522|consensus
Probab=99.94 E-value=9.9e-27 Score=236.68 Aligned_cols=257 Identities=21% Similarity=0.251 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHH
Q psy824 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGET 310 (518)
Q Consensus 231 R~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~~ 310 (518)
|..++.+|+++|++|+..|+.+++.|.+||+++..++.+..++.||.+|.+|+++|..||++|+.+...+. ..+.+|+.
T Consensus 1 r~~v~~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~-~qq~vga~ 79 (925)
T KOG3522|consen 1 RRYVLLQLIDREQSYVESLHTGVDRYVQPLKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWD-EQQKVGAS 79 (925)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHH
Confidence 45689999999999999999999999999998778888999999999999999999999999999995443 36889999
Q ss_pred HHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhh-cchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHHhhh
Q psy824 311 FLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCR-SLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAAR 389 (518)
Q Consensus 311 f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~-~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~LlL~ 389 (518)
|+.. +....+.++|+.||+|+.+|-..+.. +.+.|.+|++ ++++| |+++|.|+|+
T Consensus 80 ~v~~------fSk~~v~~~Y~~y~nn~~~A~~~l~~~~rpaf~~Fl~----------------l~~kP--r~P~y~lll~ 135 (925)
T KOG3522|consen 80 FVYS------FSKTAVLAAYSKYVNNFKRAKCALRNKKRPAFSKFLE----------------LMIKP--RFPRYELLLQ 135 (925)
T ss_pred HHHh------hhHHHHHHHHHHHHhchhHHHHHHHHhcchHHHHHHH----------------HHhcc--CCchHHHHHH
Confidence 9887 33456778899999999988654432 2566666655 78899 9999999999
Q ss_pred hccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCC--CccccccccceEeeeeEEEEecCc
Q psy824 390 CHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWE--GEDLIETSSQLIHQGEVIRVTSGM 467 (518)
Q Consensus 390 ~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~--~~~l~~~~r~ll~~g~l~~~~~~~ 467 (518)
++|+||.+|||+..|+.|+..+++++..+|+.+|..+...++.++.+.|+..- ..+|..+.|+|+.+..+.......
T Consensus 136 -mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~dl~se~vy~~ 214 (925)
T KOG3522|consen 136 -MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQDLVSETVYTG 214 (925)
T ss_pred -HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999888777776666665321 145777889999998887766666
Q ss_pred ccceEEEEEeCCeEEEEeecc----CCCC----------ceEEEEEeecCCeeEEEcCCC
Q psy824 468 WTNTITLFLFDHQLVYCKRDI----LKRN----------THVYKARLNIDTSQIINLPDG 513 (518)
Q Consensus 468 ~~~~~~~fLF~d~ll~~k~~~----~~~~----------~~~~k~~i~l~~~~v~~~~d~ 513 (518)
.++++..|+|+|.|+++.-+. .++. +|+++..++|..+.|.....|
T Consensus 215 rk~d~~~~~~rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L~~~~vvks~~g 274 (925)
T KOG3522|consen 215 RKKDRKAFLFRDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPLVFADVVKSRAG 274 (925)
T ss_pred ccchhhheeeeeeeeeeeeeeeeceecCCccccccccccceeeeeccccchhheeeeccc
Confidence 678999999999999987332 1223 899999999999999885444
No 14
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.94 E-value=3.1e-27 Score=239.66 Aligned_cols=285 Identities=20% Similarity=0.277 Sum_probs=235.9
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----HHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q psy824 221 SISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS----PEQIQTIFGNLEDILAFQSSFLEDLETK 296 (518)
Q Consensus 221 ~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~----~~~~~~lF~ni~~i~~~h~~~l~~L~~~ 296 (518)
..+++.++.|||++|.|++-||++||++|+.+.+.|++||. ....++ .+.++.+|.|+.+|+.++.+|+++|..+
T Consensus 475 ~~sl~~qe~kRqe~I~evi~ter~FVk~le~lRD~~~K~L~-~sn~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~r 553 (1175)
T COG5422 475 WESLPKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIKPLE-ESNIIPENARRNFIKHVFANINEIYAVNSKLLKALTNR 553 (1175)
T ss_pred HhhCcHHHHhhhhhhhheeeeccchhhhhHHHHHHHHHHHH-HcCcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Confidence 34578899999999999999999999999999999999997 556666 4688999999999999999999999998
Q ss_pred hCCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcc
Q psy824 297 LDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFA 376 (518)
Q Consensus 297 ~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~ 376 (518)
+.- .|.+..|||+|+++.|.|.++..|...+.|..|-..-+ ...+..|..|...+.......+.. +++||-+
T Consensus 554 Q~l-sPiv~~I~DifL~~vP~Fepfiky~a~~~yaky~~ere------kS~np~fa~Fd~~v~rl~~s~k~~-ld~yLtk 625 (1175)
T COG5422 554 QCL-SPIVNGIADIFLDYVPKFEPFIKYGASQPYAKYEFERE------KSVNPNFARFDHEVERLDESRKLE-LDGYLTK 625 (1175)
T ss_pred ccc-cccccchHHHHHhhhhhhhHHHHhhcccchhheeeeec------cccCcchhhhhHHHHhcchhhhhc-ccceecC
Confidence 863 46789999999999999999766666666666554432 345678888887776443333333 9999999
Q ss_pred hhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCC----cccccccc
Q psy824 377 PAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEG----EDLIETSS 452 (518)
Q Consensus 377 PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~----~~l~~~~r 452 (518)
|+-|+.||+||+++++|+|.++.||++++-++++.+++.+..+|-.....++...+..+.+.|- |+. ..+....|
T Consensus 626 ~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~-fk~e~~~lgl~D~~r 704 (1175)
T COG5422 626 PTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLL-FKPEYVNLGLNDEYR 704 (1175)
T ss_pred CcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhc-cCchhhcccccchhH
Confidence 9999999999999999999999999999999999999999999999999999888888877774 332 34556679
Q ss_pred ceEeeeeEEEEecCcc----cceEEEEEeCCeEEEEeeccC--CCCceEEEEEeecCCeeEEEcCCCCC
Q psy824 453 QLIHQGEVIRVTSGMW----TNTITLFLFDHQLVYCKRDIL--KRNTHVYKARLNIDTSQIINLPDGKG 515 (518)
Q Consensus 453 ~ll~~g~l~~~~~~~~----~~~~~~fLF~d~ll~~k~~~~--~~~~~~~k~~i~l~~~~v~~~~d~~~ 515 (518)
++|+.|.+.+....+. ..+..+||+++++++||.+.. .+...++..+|||.-+.+.-.+|.-+
T Consensus 705 kii~kgvlk~ka~~~td~s~~~di~f~llDn~ll~~Kak~vnkw~~hkvfqrpipl~ll~i~~~eDsp~ 773 (1175)
T COG5422 705 KIIFKGVLKRKAKSKTDGSLRGDIQFFLLDNMLLFCKAKAVNKWRQHKVFQRPIPLELLFISPDEDSPD 773 (1175)
T ss_pred HHHHhhhhhhhhhccCCcccccceeeeehhhHHHHhcccchhhhhhceeecCCCcchhhccccccCCch
Confidence 9999999877655432 448899999999999998765 33567888999999888876666543
No 15
>KOG4226|consensus
Probab=99.90 E-value=8e-24 Score=188.30 Aligned_cols=144 Identities=22% Similarity=0.416 Sum_probs=111.7
Q ss_pred CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCccccccc
Q psy824 5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRS 84 (518)
Q Consensus 5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (518)
..+-|++.|.|.|+.++||++.+|+.|.|+++..+|||+|..+|++||||++||.+.......-+.+.
T Consensus 106 ~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~------------ 173 (379)
T KOG4226|consen 106 LNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSF------------ 173 (379)
T ss_pred cCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccc------------
Confidence 34568999999999999999999999999999999999999999999999999987643322100000
Q ss_pred cCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEE
Q psy824 85 VSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVI 164 (518)
Q Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i 164 (518)
.+..+.+. ....+.......+.|||.|.+.++.||+|++||.+
T Consensus 174 ------------~~~~~~A~-------------------------a~n~~~s~vl~vVvaLYsFsssndeELsFeKGerl 216 (379)
T KOG4226|consen 174 ------------LSLRKAAS-------------------------ASNGQGSRVLHVVVALYSFSSSNDEELSFEKGERL 216 (379)
T ss_pred ------------eecchhhc-------------------------ccCCCCceEEEEEEEEecccCCChhhcccccCcee
Confidence 00000000 00001112456789999999999999999999999
Q ss_pred EEEec--CCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824 165 EVLDT--LDRDWWWGT-RGEASGWFPSAFVRLRVSQ 197 (518)
Q Consensus 165 ~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~ 197 (518)
.|+++ .|++||.++ ..|+.|++|.|||+.+.+.
T Consensus 217 eivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~ 252 (379)
T KOG4226|consen 217 EIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDG 252 (379)
T ss_pred EeccCCCCCchHHhhcccCCccceeecceEEEeccC
Confidence 99987 468999999 8999999999999988754
No 16
>KOG4348|consensus
Probab=99.90 E-value=2.6e-24 Score=203.03 Aligned_cols=191 Identities=20% Similarity=0.290 Sum_probs=120.5
Q ss_pred ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCccccccc-
Q psy824 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRS- 84 (518)
Q Consensus 6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (518)
..+|+|+|.|.+++++||.|+.||+|.|+...++|||.|.++|+.|+||++||.+-..+..+...++.+......+++.
T Consensus 100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlagst 179 (627)
T KOG4348|consen 100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAGST 179 (627)
T ss_pred ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCcccchhhhcCcC
Confidence 4689999999999999999999999999999999999999999999999999997766555433333332222222211
Q ss_pred ----------------cCCCCCcccCCccccCCCC-----CCCCCCCCCCCCCC--CCcccCCCCCccC----CCCCCcc
Q psy824 85 ----------------VSQPLGINELSPLLRRKPI-----GTRPGDGTNSLCCS--DDELLSDSESSVT----SLGMDED 137 (518)
Q Consensus 85 ----------------~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~ 137 (518)
+.++..+.+.....-.+.. .....+.....+.. ....++.+..++. .....-.
T Consensus 180 ~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~tK 259 (627)
T KOG4348|consen 180 ARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETTK 259 (627)
T ss_pred CCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccchh
Confidence 1122111111000000000 00000000000000 0000111110000 0011113
Q ss_pred ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEccc
Q psy824 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVS 196 (518)
Q Consensus 138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~ 196 (518)
...+|+++|.|++++++||.|+.||+|.++.+. +.|||+|+++|+.|.||.|||+.+..
T Consensus 260 tKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~~ 320 (627)
T KOG4348|consen 260 TKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQV 320 (627)
T ss_pred hhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcCC
Confidence 356899999999999999999999999988763 58999999999999999999998873
No 17
>KOG1029|consensus
Probab=99.89 E-value=1.2e-23 Score=210.79 Aligned_cols=180 Identities=24% Similarity=0.363 Sum_probs=129.8
Q ss_pred EEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCC-----Cccccccc
Q psy824 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIR-----PHHALRRS 84 (518)
Q Consensus 10 ~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 84 (518)
..+++|.+....+|.|..||.|.|+++ |++||.|+++++.|.||++|...+.+..+...++-.+.. -+.++...
T Consensus 910 a~~~~~e~vEq~dlt~~egd~iLvtek-dgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k~g~~~kkpeiAqVia~y 988 (1118)
T KOG1029|consen 910 AVYPYFEAVEQGDLTFHEGDEILVTEK-DGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPKQGPTPKKPEIAQVIADY 988 (1118)
T ss_pred EEecccccccCCCccccccceEEEeec-cCceeccccCCccccccccceeeehhccCCCCCCCCCCCCCCchhhhhhhhh
Confidence 345566668999999999999999988 668999999999999998855544333332222211221 11122111
Q ss_pred cCCCCCccc-------CCccccCCCCCCCCCC--------CCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCC
Q psy824 85 VSQPLGINE-------LSPLLRRKPIGTRPGD--------GTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHV 149 (518)
Q Consensus 85 ~~~~~~~~~-------l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 149 (518)
+ .++.++ |+--....+.+||.+. ..+++|+.+..++.++.+..++.. .+++.++|+|||.
T Consensus 989 v--As~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~---~~v~qviamYdY~ 1063 (1118)
T KOG1029|consen 989 V--ASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPAT---RPVCQVIAMYDYE 1063 (1118)
T ss_pred h--ccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCC---CccceeEEeeccc
Confidence 1 133333 3333444556788753 236889999999888754444332 2367899999999
Q ss_pred CCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824 150 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195 (518)
Q Consensus 150 ~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 195 (518)
|+++|||+|.+||+|.|+.+++++||.|+.+|..|+||+|||...+
T Consensus 1064 AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1064 AQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred cCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccc
Confidence 9999999999999999999999999999999999999999995544
No 18
>KOG4225|consensus
Probab=99.86 E-value=2e-21 Score=184.54 Aligned_cols=192 Identities=22% Similarity=0.305 Sum_probs=120.7
Q ss_pred CccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC----CCCCCCC-------
Q psy824 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS----PNCDISK------- 70 (518)
Q Consensus 2 d~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~----~~~~~~~------- 70 (518)
++...+.|+|+|+|.|++..||+|.+||+|.|+.+.|.+|+.|+.+|+.|+||.+||+.... .+....+
T Consensus 226 ~~~~~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g 305 (489)
T KOG4225|consen 226 TEKPKRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQG 305 (489)
T ss_pred CccccchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccc
Confidence 34556679999999999999999999999999999999999999999999999999995443 1221111
Q ss_pred --ccccCCCcc-------------ccccccCC-------C-CCcccCCccccCCCCCCCC----CCCC--CCCCCCCCcc
Q psy824 71 --SLKRIRPHH-------------ALRRSVSQ-------P-LGINELSPLLRRKPIGTRP----GDGT--NSLCCSDDEL 121 (518)
Q Consensus 71 --~~~~~~~~~-------------~~~~~~~~-------~-~~~~~l~~~~~~~~~~~~~----~~~~--~~~~~~~~~~ 121 (518)
.....++.. .+.+.+.. + .++.+.+|.+++..+.... .... ...+.....+
T Consensus 306 ~a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~ 385 (489)
T KOG4225|consen 306 EAIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNEL 385 (489)
T ss_pred cccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhh
Confidence 000001000 01111110 0 3445566654443322110 0000 0000000000
Q ss_pred ---------------cCCCCC--------------ccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCC
Q psy824 122 ---------------LSDSES--------------SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR 172 (518)
Q Consensus 122 ---------------~~~~~~--------------~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~ 172 (518)
...+.. .+.....+......++|||.|.+++++||.|..||+|.|+++.|+
T Consensus 386 ~~~~~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcdd 465 (489)
T KOG4225|consen 386 RPLSEDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEKCDD 465 (489)
T ss_pred cccccchhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCCchhheeccCCEEeeeecccC
Confidence 000000 000001111223447999999999999999999999999999999
Q ss_pred CeEEE--EECCeeEEEcCCCEEE
Q psy824 173 DWWWG--TRGEASGWFPSAFVRL 193 (518)
Q Consensus 173 ~w~~~--~~~g~~G~~P~~~v~~ 193 (518)
||..| +..|..|.||.|||+.
T Consensus 466 gWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 466 GWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceeccceecccccccCcccccc
Confidence 99999 5899999999999974
No 19
>KOG0689|consensus
Probab=99.84 E-value=5.3e-22 Score=195.71 Aligned_cols=254 Identities=24% Similarity=0.274 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCCCC
Q psy824 228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS---PEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPY 303 (518)
Q Consensus 228 ~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~---~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~~ 303 (518)
-.++..++.|++.||..||++|..+...|+..+... -++ ...-+.||+||.+|+.+|.. |+..++.+...
T Consensus 60 ~~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~--~lp~~lrg~~~iifgni~~i~~~h~~~fl~e~e~~~r~---- 133 (448)
T KOG0689|consen 60 LKKRSFVLDELIATEVDYVKDLKSVVENYIELLDAE--DLPEDLRGKDKIIFGNIKEIYEFHKKEFLPELERCERD---- 133 (448)
T ss_pred hhhhHHHHHHHHHHHHhhhhcccccccccccccccc--CCChhccCCceeeechHHHHHHhhcccCcchHHHhhhC----
Confidence 356788999999999999999999999999988532 222 13367899999999999998 59999988752
Q ss_pred CCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHH
Q psy824 304 KSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELA 383 (518)
Q Consensus 304 ~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~ 383 (518)
....|.+|++|...|.. .|..||.|.++. .... ..-....|++.++. .......+.+||++||||+.+
T Consensus 134 ~~~~~~~f~kh~~k~~~--------~y~~y~q~kp~s-~~~~-~~~~~~~~f~~~~~--~~~~~l~l~~~l~kPiQR~~k 201 (448)
T KOG0689|consen 134 PLELGQAFAKHERKNSV--------LYVTYCQNKPKS-DYLL-AEYDNEAFFQEYQT--QLGHKLDLSSYLIKPVQRIMK 201 (448)
T ss_pred HHHHHHHHHHHHHHhhh--------hhhhhhcCCCCC-cccc-eecccchhhHHHhh--hcccccccchhhhhhhHHHHH
Confidence 36799999999988863 389999998865 1110 11122346666654 334444599999999999999
Q ss_pred HHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEEE
Q psy824 384 RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463 (518)
Q Consensus 384 y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~ 463 (518)
|.+||+++++.+...-.|...|.+|.+.|..+.+.+|+++ ...++.|+.+ ++... +++++++++.+.
T Consensus 202 YqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~-----------~~~~l~g~e~-~l~~q-G~l~~qd~f~v~ 268 (448)
T KOG0689|consen 202 YQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMM-----------QVGRLQGFEG-DLKAQ-GKLRRQDEFDVS 268 (448)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhh-----------ccchhccccc-chHhh-ccccccCcccee
Confidence 9999999999999888999999999999999999887743 2246667765 35544 789999998776
Q ss_pred ecCc-ccceEEEEEeCCeEEEEeeccC--CCCceEEEEEeecCCeeEEEcCC
Q psy824 464 TSGM-WTNTITLFLFDHQLVYCKRDIL--KRNTHVYKARLNIDTSQIINLPD 512 (518)
Q Consensus 464 ~~~~-~~~~~~~fLF~d~ll~~k~~~~--~~~~~~~k~~i~l~~~~v~~~~d 512 (518)
.... ..+.+.+|||.-++||+|.... ....|.||..|.++++.....-+
T Consensus 269 ~~~~~~~~~R~vflFe~~v~Fse~~~~~~~~~~y~yk~~ik~~~lgle~n~~ 320 (448)
T KOG0689|consen 269 HGRAGKKKDRRVFLFERLVVFSKLRKPESGTETYVYKQHIKVNDLGLEENND 320 (448)
T ss_pred eccccccchhhhhhhhhhhhhhhhhcCCCCCcceeeecchhhhheeeeccCC
Confidence 5543 2568999999999999996642 23689999999999999865443
No 20
>KOG3531|consensus
Probab=99.83 E-value=4.4e-22 Score=201.90 Aligned_cols=263 Identities=16% Similarity=0.258 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhh-CCCCCC------C
Q psy824 232 SRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL-DWDAPY------K 304 (518)
Q Consensus 232 ~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~-~~~~~~------~ 304 (518)
..+++||..|||.|.++|.++...|...+- .....+......+|.|++.|.++|+.||+.+++++ .|++.. .
T Consensus 535 yF~~kel~~tERty~kdleV~tt~Frst~v-~~dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria~weGrsnani~~~ 613 (1036)
T KOG3531|consen 535 YFIVKELSDTERTYLKDLEVITTWFRSTVV-KEDAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIALWEGRSNANIVIE 613 (1036)
T ss_pred eeeecccccccccchhccceeeeeecceee-cCcccccchhhhhccCCChhhHHHHHHHHHHHHHHHhccCCCCCceeee
Confidence 458999999999999999999988877774 44567778889999999999999999999999999 565432 2
Q ss_pred CchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhc---chHHHHHHHHHHHhhccccccCccCCCcchhhHH
Q psy824 305 SCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRS---LEDKARWLAAFQQERALVEQDREDGLEFAPAAKE 381 (518)
Q Consensus 305 ~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~---~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl 381 (518)
+.||++.++++-.+++ |..|...|...+..+... .+.+..+...++..+.| ..+++.||++|++|+
T Consensus 614 ~~igDVmLk~m~~l~i---------~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefelqkvc--yLP~~~fllkpL~rl 682 (1036)
T KOG3531|consen 614 QRIGDVMLKNMRSLKI---------TTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFELQKVC--YLPLNTFLLKPLSRL 682 (1036)
T ss_pred eccCCcchhhhhccch---------hhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHhhhcc--ccccchhhhccccHH
Confidence 5689999999988888 666666666665444333 34444455555544333 235999999999999
Q ss_pred HHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEE
Q psy824 382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI 461 (518)
Q Consensus 382 ~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~ 461 (518)
+.|.++|+.|+.+.+++|.||++...+...+-+....+...+-+.| +|.+|++.+.+. ..|+.++|+||++|.+.
T Consensus 683 lhyq~~LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e---~l~Elkrdl~s~--e~LV~p~rE~ir~g~ll 757 (1036)
T KOG3531|consen 683 LHYQLALERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE---KLRELKRDLASI--ENLVHPGREFIRSGCLL 757 (1036)
T ss_pred HHHHHHHHHhhcccCCCccchHHHhhcccccccccccccccchhHH---HHHHHHHhhhcc--ccccCcchhhhhcCCch
Confidence 9999999999999999999999999999888888888877666666 889999999876 56899999999999999
Q ss_pred EEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824 462 RVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 513 (518)
Q Consensus 462 ~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~ 513 (518)
+.+. +.-+.+.+|||+|++|++.+.....+.|.+.+.+|+. +.+++.+++
T Consensus 758 K~sk-kgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~-l~~en~en~ 807 (1036)
T KOG3531|consen 758 KLSK-KGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT-LTMENSENE 807 (1036)
T ss_pred hhcc-ccchhhhhhhhhhhheeccCCCChhheeEeccCCceE-eeeeccccc
Confidence 9864 4467899999999999998775666789999999999 999988774
No 21
>KOG4240|consensus
Probab=99.82 E-value=1.7e-21 Score=205.53 Aligned_cols=252 Identities=25% Similarity=0.355 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCCC
Q psy824 229 QVRSRVVRELINTERDFVKVLHDVSEGYLAECRRR-----NDMFSPEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAP 302 (518)
Q Consensus 229 ~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~-----~~~l~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~ 302 (518)
.++..++.|+|+||+.|+++|....+.|...+... .+.|. ....||+|+++|+.+|.. ||..|++.-..
T Consensus 631 rl~~~~m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~Ln--k~~~ifgnmeeiy~fhn~~~L~eLe~y~~~--- 705 (1025)
T KOG4240|consen 631 RLKRHVMRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLLN--KKEIIFGNMEEIYEFHNDIFLSELEKYEQL--- 705 (1025)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccccccc--hHHHHHhhHHHHHHHHhhHHHHHhhhhccC---
Confidence 44577999999999999999999999998877431 12333 778899999999999997 89999998642
Q ss_pred CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHH
Q psy824 303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKEL 382 (518)
Q Consensus 303 ~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~ 382 (518)
...||.||+++++.|.. |..||.|-+..-...... .--.|+..|+...... . .+.++|++||||++
T Consensus 706 -pE~Vg~~fle~~d~fql---------y~~Yc~nke~S~ql~~~~--a~~~ff~e~qr~~~l~-l-~~~S~l~kpvqrit 771 (1025)
T KOG4240|consen 706 -PEDVGHCFLERADDFQL---------YAKYCQNKELSNQLIRLH--AGCSFFQEIQRRHGLE-L-SISSYLIKPVQRIT 771 (1025)
T ss_pred -HHHHHHHHHHHHHHHHH---------HHHHHhCCcchHHHHHhc--ccccccHHHHHHhhhh-h-hhHHHHhHHHHHHH
Confidence 36799999999999955 999999977653222111 1112566666543322 2 49999999999999
Q ss_pred HHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEE
Q psy824 383 ARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIR 462 (518)
Q Consensus 383 ~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~ 462 (518)
+|.|+||+++++..+ -...|++|++.|-.+...+|+.+.- ..|+|+.+ +|-. -+.+|.+|.+.+
T Consensus 772 kYqlllkell~~c~e---~~~~lkd~l~~ml~v~k~~nd~mh~-----------~~~~~~d~-nl~~-lg~~~~q~~f~v 835 (1025)
T KOG4240|consen 772 KYQLLLKELLKCCCE---GTGDLKDALEVMLSVPKKVNDSMHL-----------IALEGYDG-NLDE-LGKLIMQDSFSV 835 (1025)
T ss_pred HHHHHHHHHHHhhhh---chHHHHHHHHHHHhhhhhcccccCH-----------HHHhhhhh-hHHH-HHHHHhhcccee
Confidence 999999999995443 3468999999999999999995521 33444432 2333 368899999887
Q ss_pred EecC---cccceEEEEEeCCeEEEEeecc--CCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824 463 VTSG---MWTNTITLFLFDHQLVYCKRDI--LKRNTHVYKARLNIDTSQIINLPDGKG 515 (518)
Q Consensus 463 ~~~~---~~~~~~~~fLF~d~ll~~k~~~--~~~~~~~~k~~i~l~~~~v~~~~d~~~ 515 (518)
++.+ +...+|++|||.-.|||||+.. .++.+|.+++.++++.+.|.+.-.|+.
T Consensus 836 w~~k~l~rk~~erhlfl~ei~ivf~K~~~~s~~~~~~~~~~~l~~~e~gite~v~Gd~ 893 (1025)
T KOG4240|consen 836 WKPKALARKGMERHLFLFEISIVFCKRIEESSERIKYVSKKKLPMSEVGITEHVEGDP 893 (1025)
T ss_pred ecHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccCCHHhhcchhhcccCc
Confidence 7432 2356899999999999999653 335678888889999999998777764
No 22
>KOG4348|consensus
Probab=99.82 E-value=2e-21 Score=183.67 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=112.0
Q ss_pred EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCccccccccCC
Q psy824 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRSVSQ 87 (518)
Q Consensus 8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (518)
-+.+-|||.|+.++||.++.|++|+.+.+.++|||.|+++|+.|.||.++|.+....--+-....+ ..+....+
T Consensus 3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk------~~r~~l~q 76 (627)
T KOG4348|consen 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNK------LSRDSLVQ 76 (627)
T ss_pred ceeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhccccccccc------ccccchhh
Confidence 367789999999999999999999999999999999999999999998888865322100000000 00000000
Q ss_pred CCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEEEEE
Q psy824 88 PLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL 167 (518)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~ 167 (518)
-.+.+.|... ..-.............|.+.|.|.+++++||.|+.||+|.|+
T Consensus 77 ~~s~n~l~~~----------------------------q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli 128 (627)
T KOG4348|consen 77 MTSRNPLTVH----------------------------QQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELI 128 (627)
T ss_pred cccCCCcccc----------------------------CcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhh
Confidence 1111111100 000000111223457899999999999999999999999999
Q ss_pred ecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824 168 DTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198 (518)
Q Consensus 168 ~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~ 198 (518)
.....|||.|.++|+.|+||.|||..+....
T Consensus 129 ~eVEeGWw~G~Lngk~GmFPsNFVkel~~~s 159 (627)
T KOG4348|consen 129 SEVEEGWWKGKLNGKVGMFPSNFVKELPTPS 159 (627)
T ss_pred hHhhhhhhhceecCcccccchhhceecCCCC
Confidence 9999999999999999999999999876543
No 23
>KOG1029|consensus
Probab=99.81 E-value=2e-20 Score=187.97 Aligned_cols=168 Identities=21% Similarity=0.432 Sum_probs=109.7
Q ss_pred ceEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCcccccc
Q psy824 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRR 83 (518)
Q Consensus 6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (518)
.+.|+|||.|.|.+.+||+|..||+|.|-+.. ++||..|+++|++||||.+||+....... ..+..|...++.
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~-----p~~v~Pv~~l~~ 767 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVET-----PGGVPPVQNLPP 767 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCC-----CCCCCchhcCCC
Confidence 67899999999999999999999999997654 37999999999999999999996543221 111111111111
Q ss_pred ccCCCCCcccCCc--cccCCCCC-CCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCC
Q psy824 84 SVSQPLGINELSP--LLRRKPIG-TRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRA 160 (518)
Q Consensus 84 ~~~~~~~~~~l~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~ 160 (518)
......+.++... ......+. ...+.+ +.... .+..+..+....+|.|+|.|.+..+++|+|.+
T Consensus 768 ~~~psas~nq~a~~ad~~~~~~n~~~~t~~-----aA~p~--------~tapg~~eve~lq~iA~y~wrakke~dLsFsk 834 (1118)
T KOG1029|consen 768 TMTPSASVNQIAVVADTKNESANAMGLTEG-----AAPPA--------LTAPGQGEVEILQAIALYPWRAKKENDLSFSK 834 (1118)
T ss_pred CCCcccccccceeecccccchhhccCCCCC-----CCCcc--------ccCCCchhhhhhhHHhhccccccccccccccC
Confidence 1111111111100 00000000 000000 00000 00111222334578999999999999999999
Q ss_pred CCEEEEEecCCCCeEEEEECCeeEEEcCCCEE
Q psy824 161 GDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192 (518)
Q Consensus 161 g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~ 192 (518)
||+|+|+++.+ .||.|...|..||||.+||+
T Consensus 835 gd~I~Vlekqe-mwW~G~v~g~~GwFPksYVk 865 (1118)
T KOG1029|consen 835 GDTITVLEKQE-MWWFGEVAGEIGWFPKSYVK 865 (1118)
T ss_pred CCeeeeehhcc-ceecccccCccCcCcHHhhh
Confidence 99999999865 79999999999999999999
No 24
>KOG3524|consensus
Probab=99.80 E-value=4.1e-20 Score=184.72 Aligned_cols=267 Identities=20% Similarity=0.235 Sum_probs=212.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCC
Q psy824 226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA 301 (518)
Q Consensus 226 ~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~----~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~ 301 (518)
+....|-.+-.++..||..|+..|+.+.+.|..++.. ..+++.+.++.++|+|+++|..+|++..+.|......|.
T Consensus 380 sk~s~r~~~~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~ 459 (850)
T KOG3524|consen 380 SKLSLRVKFKEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWI 459 (850)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhH
Confidence 4556688899999999999999999999988665531 567888999999999999999999999888888763222
Q ss_pred CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHH
Q psy824 302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKE 381 (518)
Q Consensus 302 ~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl 381 (518)
. ..+...+..+ . |.++...+...+.+|.+.++.|.+|++.-+..+.|.++. +..+++.||||+
T Consensus 460 e----~k~el~kayp---p---------yvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~-l~dlmirpvqrl 522 (850)
T KOG3524|consen 460 E----AKEELKKAYP---P---------YVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQK-LTDLMIRPVQRL 522 (850)
T ss_pred H----HHHHHHHhcc---c---------hhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhc-ccchhccchhhh
Confidence 2 1122222222 1 555566666778889999999999999888888888887 999999999999
Q ss_pred HHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEE
Q psy824 382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI 461 (518)
Q Consensus 382 ~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~ 461 (518)
+--.|||++|.| ..+.+|+..+++|+.+++++..++|+-+++.++.......-..|+|+++ .|+..+|.||..-.+.
T Consensus 523 psvilllndl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa-~lvssnrsfi~~lev~ 599 (850)
T KOG3524|consen 523 PSVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPA-ILVSSNRSFIRELEVS 599 (850)
T ss_pred hHHHHHHHHHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCch-hheeccchHHHHhhhh
Confidence 999999999999 4588999999999999999999999999999999999998899999876 4788889998877663
Q ss_pred -EEec-Cc-ccceEEEEEeCCeEEEEeeccC-----------CCCceEEEEEeecCCee-EEEcCC
Q psy824 462 -RVTS-GM-WTNTITLFLFDHQLVYCKRDIL-----------KRNTHVYKARLNIDTSQ-IINLPD 512 (518)
Q Consensus 462 -~~~~-~~-~~~~~~~fLF~d~ll~~k~~~~-----------~~~~~~~k~~i~l~~~~-v~~~~d 512 (518)
.+.. +. ......||||+|++++|+++.. .+..|.+-..|+|+.|. |.||..
T Consensus 600 i~l~~~~~~rg~~~~l~lf~dvlei~k~r~~~~~tF~S~hs~tr~p~KhI~li~LntIr~V~dIrE 665 (850)
T KOG3524|consen 600 IALTSPGLQRGAKMKLFLFHDVLEITKIRLARHASFASLHSRQRRPYKHIDLIQLNTIRSVFDIRE 665 (850)
T ss_pred hhhcCcccccccceeeehhhhHHHHHHHhHhhhccccCCCCCCCCcccceeeccHHHHHHHhhhhh
Confidence 2211 11 2346789999999999997621 22347777889999887 555553
No 25
>KOG4226|consensus
Probab=99.77 E-value=1e-18 Score=155.87 Aligned_cols=160 Identities=24% Similarity=0.419 Sum_probs=105.4
Q ss_pred ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC-eeEEEEeeeeeccCCCCCCCCCccccCCCccccccc
Q psy824 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-AFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRS 84 (518)
Q Consensus 6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~-~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (518)
..+++|.|||.|+.+.||.+++.+.+-+++. ...||+.+... +.|+.|++||+...+..-. .-.+.+++
T Consensus 4 ~~~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~--------si~knlkd- 73 (379)
T KOG4226|consen 4 EVIVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKG--------SIVKNLKD- 73 (379)
T ss_pred EEEEEEEechhcccchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhh--------HHHHhhhh-
Confidence 4568999999999999999999999999865 46899998764 5699999999854321110 00000100
Q ss_pred cCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEE
Q psy824 85 VSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVI 164 (518)
Q Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i 164 (518)
..|+. .+.++ +......+++...--+..........|.+.|.|.|+.++||++-+|+.|
T Consensus 74 ---~~g~k-----t~~k~-------------s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv 132 (379)
T KOG4226|consen 74 ---TLGLK-----TRRKT-------------SARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRV 132 (379)
T ss_pred ---ccccc-----cccCC-------------CccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEE
Confidence 00110 00000 0000000011000000011112234578889999999999999999999
Q ss_pred EEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824 165 EVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196 (518)
Q Consensus 165 ~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 196 (518)
.|+++..+|||.|..+|+.||||+|||.....
T Consensus 133 ~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~d 164 (379)
T KOG4226|consen 133 TVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVD 164 (379)
T ss_pred EEEEeccCcceecccCCeeccccccceehhcc
Confidence 99999999999999999999999999986543
No 26
>KOG4792|consensus
Probab=99.75 E-value=3.3e-18 Score=148.68 Aligned_cols=164 Identities=20% Similarity=0.340 Sum_probs=115.2
Q ss_pred cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeeeccCCCCCCCCCccccCCCccccc
Q psy824 4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIINHSISPNCDISKSLKRIRPHHALR 82 (518)
Q Consensus 4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 82 (518)
+...+++|+|||.+..++||+|++|++++|+++.++.||.++.. |+.|++|..||+.-.......+...++..
T Consensus 122 ~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~------ 195 (293)
T KOG4792|consen 122 EEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGAS------ 195 (293)
T ss_pred hhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcc------
Confidence 34567899999999999999999999999999999999999875 66799998888754332211111111100
Q ss_pred cccCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCC--CCCCCCCCC
Q psy824 83 RSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAM--EAEELGFRA 160 (518)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~eL~~~~ 160 (518)
....+.++.+.. ...+.+.+..++.+.....+.+|+++++-.+. +...|.++.
T Consensus 196 --------------------e~si~q~~~g~e-----~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~lev 250 (293)
T KOG4792|consen 196 --------------------ESSIPQSGGGAE-----RFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEV 250 (293)
T ss_pred --------------------cccCCCCCCCCC-----CCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhc
Confidence 000000000000 01112223334445555677899999987665 455899999
Q ss_pred CCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824 161 GDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198 (518)
Q Consensus 161 g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~ 198 (518)
||+|.|++..-+|-|+|+++|+.|.||..||+.....+
T Consensus 251 GdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~~ 288 (293)
T KOG4792|consen 251 GDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQN 288 (293)
T ss_pred CcEEEEEeeccCceeeeeecCccccccceeEEeeccCC
Confidence 99999999999999999999999999999999876543
No 27
>KOG3601|consensus
Probab=99.67 E-value=2.9e-17 Score=142.37 Aligned_cols=176 Identities=24% Similarity=0.351 Sum_probs=120.9
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeee--------------------------
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIIN-------------------------- 59 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~-------------------------- 59 (518)
|.|+|++||.+...+||+|.+||.|.++...| ..|+..+..|..|..|.++.+
T Consensus 1 Mea~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G 80 (222)
T KOG3601|consen 1 MEAVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDG 80 (222)
T ss_pred CchhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcc
Confidence 45789999999999999999999999998866 579999999988888777664
Q ss_pred -----ccCCCCCCCCCccccC---CCccccccccCCC-------CCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCC
Q psy824 60 -----HSISPNCDISKSLKRI---RPHHALRRSVSQP-------LGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSD 124 (518)
Q Consensus 60 -----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (518)
.+.++++.++.+++.. .+.+++|...+.+ .+.+.++.+.+..+...... ..+.+
T Consensus 81 ~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~q-----------i~l~d 149 (222)
T KOG3601|consen 81 DFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQ-----------IFLRD 149 (222)
T ss_pred hhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCccccccccee-----------eeecc
Confidence 2334455555555443 3555665444333 22333333333332221110 00111
Q ss_pred CCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194 (518)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 194 (518)
......+. .......++.++|||.++.+.+|.|++||.+.|++..++.||.|+..|+.|+||++||-..
T Consensus 150 ~~~~~~~~-~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 150 MEPPPAPL-PPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred cccccccC-CCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 11000000 1113346889999999999999999999999999999999999999999999999999654
No 28
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.52 E-value=1.9e-14 Score=98.84 Aligned_cols=49 Identities=33% Similarity=0.674 Sum_probs=44.9
Q ss_pred EecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN 59 (518)
Q Consensus 11 al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~ 59 (518)
|+|||.|+.++||+|++||+|.|+.+.++|||.|+.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 7999999999999999999999999989999999999999999998874
No 29
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.52 E-value=1.6e-14 Score=99.20 Aligned_cols=49 Identities=41% Similarity=0.904 Sum_probs=45.4
Q ss_pred EeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEE
Q psy824 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192 (518)
Q Consensus 144 a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~ 192 (518)
|+|+|.|+.++||+|++||+|.|+...++|||.|+.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999999999999999999999999999996
No 30
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.37 E-value=8.7e-13 Score=93.55 Aligned_cols=54 Identities=44% Similarity=0.896 Sum_probs=48.7
Q ss_pred EEEEeecCCCCCCCCCCCCCCCEEEEE-ecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824 141 LAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRLR 194 (518)
Q Consensus 141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~~ 194 (518)
+++|++||.+..+++|+|++||+|.|+ +..++|||.|+.+|+.||||.+||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999999 788889999999999999999999864
No 31
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.35 E-value=1.7e-12 Score=92.09 Aligned_cols=53 Identities=34% Similarity=0.647 Sum_probs=47.2
Q ss_pred EEEEecCCCCCCCCCcccCCCCEEEEE-EecCCCeeEEEeCCeeEEEEeeeeec
Q psy824 8 LAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEAFEHLSQIIINH 60 (518)
Q Consensus 8 ~~~al~d~~~~~~~eL~~~~gd~i~v~-~~~~~~Ww~g~~~~~~g~~p~~~v~~ 60 (518)
+++|++||.++.+++|+|++||+|.|+ ++.+++||.|+.+|+.|+||..++++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence 589999999999999999999999999 77788999999999999999887763
No 32
>KOG2996|consensus
Probab=99.33 E-value=1.1e-12 Score=129.17 Aligned_cols=58 Identities=36% Similarity=0.754 Sum_probs=52.2
Q ss_pred cceeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEc
Q psy824 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLR 194 (518)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~ 194 (518)
.....|+|-|||-|.+..||||+.||+|.++.+. |.|||.|+.+|+.||||++||+..
T Consensus 803 ~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 803 KVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED 862 (865)
T ss_pred ceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence 4556788999999999999999999999999875 479999999999999999999864
No 33
>KOG3632|consensus
Probab=99.30 E-value=3.1e-12 Score=132.91 Aligned_cols=153 Identities=25% Similarity=0.356 Sum_probs=105.1
Q ss_pred ceEEEEecCCCCC--------CCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCC
Q psy824 6 VVLAEAVWDHVAM--------EAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIR 76 (518)
Q Consensus 6 ~~~~~al~d~~~~--------~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~ 76 (518)
..+.+|||||.+- .+.||+|++||+|.|+...| +|+|.|+++|+.|++|.++|.+......
T Consensus 1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~e---------- 1207 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNE---------- 1207 (1335)
T ss_pred ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcH----------
Confidence 4678999999884 46799999999999998877 8999999999999999999986543221
Q ss_pred CccccccccCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCC---
Q psy824 77 PHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEA--- 153 (518)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--- 153 (518)
..+++. +.++.|.+....... | ...++..... ....+..++|.|||+++..
T Consensus 1208 --q~~~r~------rqG~lPsv~~~e~~~----g---------s~~s~g~~k~-----vp~~p~~mvaa~dydpqeSSpg 1261 (1335)
T KOG3632|consen 1208 --QTDRRW------RQGLLPSVPTEEMRK----G---------SAFSDGQQKM-----VPWPPRQMVAASDYDPQESSPG 1261 (1335)
T ss_pred --HHHHHH------HhccCCCCCchhhhc----c---------cccCCCCccc-----cCCchhhhhhhhcCCcccCCCC
Confidence 001100 011222111111000 0 0000111000 0123457788999998865
Q ss_pred ----CCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEEEc
Q psy824 154 ----EELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRLR 194 (518)
Q Consensus 154 ----~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~ 194 (518)
.+|.|+.||+|+|..+.| +|++.|+++|+.|++|++|++..
T Consensus 1262 ~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1262 LDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAP 1307 (1335)
T ss_pred cccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCC
Confidence 489999999999998865 78999999999999999999765
No 34
>KOG2199|consensus
Probab=99.30 E-value=4.5e-13 Score=126.61 Aligned_cols=56 Identities=34% Similarity=0.621 Sum_probs=52.6
Q ss_pred CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824 5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH 60 (518)
Q Consensus 5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~ 60 (518)
.+..+||||||+|.+++||+|++||+|+|++..+.+||.|+++++.|+||.+||..
T Consensus 214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~ 269 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTA 269 (462)
T ss_pred cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhh
Confidence 35678999999999999999999999999999999999999999999999988884
No 35
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.28 E-value=6.6e-12 Score=86.27 Aligned_cols=46 Identities=33% Similarity=0.617 Sum_probs=42.1
Q ss_pred EEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEe
Q psy824 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQ 55 (518)
Q Consensus 10 ~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~ 55 (518)
+|+|||.++.++||+|++||.|.|+++.+++||.|+.. +..|++|+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 69999999999999999999999999999999999987 57899994
No 36
>KOG1118|consensus
Probab=99.27 E-value=8.7e-12 Score=114.04 Aligned_cols=58 Identities=29% Similarity=0.616 Sum_probs=55.2
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 196 (518)
.++|+|+|||++++++||.|+.||+|+|+...|.+||.|+..|..|+||.+||+++.+
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP 363 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence 3579999999999999999999999999999999999999999999999999999865
No 37
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.24 E-value=3.7e-11 Score=95.21 Aligned_cols=64 Identities=41% Similarity=0.822 Sum_probs=58.1
Q ss_pred ceEeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCCC
Q psy824 453 QLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGR 516 (518)
Q Consensus 453 ~ll~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~ 516 (518)
+||++|++.+++.. .+.++|++|||+..||+||+...++..|.||++|.|+.+.|.+++||++.
T Consensus 1 eli~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~ 65 (109)
T cd01224 1 ELFLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMF 65 (109)
T ss_pred CceEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccc
Confidence 48999999999864 34789999999999999999888889999999999999999999999765
No 38
>KOG2070|consensus
Probab=99.22 E-value=7e-12 Score=121.44 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=53.8
Q ss_pred ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI 62 (518)
Q Consensus 6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~ 62 (518)
--.++|.|.|.+.+.|||+|.+||+|+|+...++|||.|+++|+.||||++||++..
T Consensus 17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence 357999999999999999999999999999999999999999999999999999764
No 39
>KOG2199|consensus
Probab=99.20 E-value=3.4e-11 Score=114.14 Aligned_cols=59 Identities=42% Similarity=0.754 Sum_probs=55.4
Q ss_pred cceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195 (518)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 195 (518)
..+..++|||||+|..++||+|++||+|+|++..+++||.|+..+..|+||.+||....
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999998766
No 40
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.19 E-value=1.9e-11 Score=83.90 Aligned_cols=46 Identities=41% Similarity=0.862 Sum_probs=42.0
Q ss_pred EEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC--CeeEEEcC
Q psy824 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EASGWFPS 188 (518)
Q Consensus 143 ~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~ 188 (518)
+|+|+|.++.++||+|++||.|.|++..+++||.++.. |+.|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 58999999999999999999999999999999999943 79999995
No 41
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.18 E-value=6.8e-11 Score=95.49 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=54.9
Q ss_pred cceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCC-------CceEEEEEeecCCeeEEEcCCCCC
Q psy824 452 SQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKR-------NTHVYKARLNIDTSQIINLPDGKG 515 (518)
Q Consensus 452 r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~-------~~~~~k~~i~l~~~~v~~~~d~~~ 515 (518)
+.||++|.|.+++.++ ..++||+|||||+||+||++..+. ..|.+++.++|+.+.|.+.+|++.
T Consensus 2 ~elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~ 73 (112)
T cd01261 2 NEFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSE 73 (112)
T ss_pred ccccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcc
Confidence 6899999999998643 367999999999999999864322 379999999999999999999874
No 42
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.13 E-value=3.1e-10 Score=90.43 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=53.5
Q ss_pred ceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824 453 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 513 (518)
Q Consensus 453 ~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~ 513 (518)
+||++|.|.+++. +..++|++|||||+||+|.+....+.+|.+++.|||.+|+|.+++|+
T Consensus 1 ~~ikEG~L~K~~~-k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~ 60 (99)
T cd01220 1 EFIRQGCLLKLSK-KGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHE 60 (99)
T ss_pred CeeeEEEEEEEeC-CCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCC
Confidence 4899999999975 45789999999999999998766667899999999999999998884
No 43
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.12 E-value=3.2e-10 Score=90.64 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=54.1
Q ss_pred ccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824 451 SSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG 515 (518)
Q Consensus 451 ~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~ 515 (518)
+|.||++|.|++++ .+..+.|++|||||+||+++.. ..+.+|.+++.+||++|.|++++|+..
T Consensus 1 gR~li~eG~L~K~~-rk~~~~R~ffLFnD~LvY~~~~-~~~~~~~~~~~i~L~~~~v~~~~d~~~ 63 (104)
T cd01218 1 GRVLVGEGVLTKMC-RKKPKQRQFFLFNDILVYGNIV-ISKKKYNKQHILPLEGVQVESIEDDGI 63 (104)
T ss_pred CCEEEecCcEEEee-cCCCceEEEEEecCEEEEEEee-cCCceeeEeeEEEccceEEEecCCccc
Confidence 58999999999998 4556789999999999999764 334679999999999999999998653
No 44
>KOG0162|consensus
Probab=99.10 E-value=3.4e-10 Score=114.78 Aligned_cols=55 Identities=31% Similarity=0.691 Sum_probs=52.4
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194 (518)
Q Consensus 140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 194 (518)
..+.|+|||.+++.+||+|++||+|.++.++.+|||.|+.+|+.||||.+||+.+
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence 6789999999999999999999999999999999999999999999999999753
No 45
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.08 E-value=3.8e-10 Score=81.08 Aligned_cols=55 Identities=38% Similarity=0.752 Sum_probs=50.6
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC-CeeEEEcCCCEEEc
Q psy824 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EASGWFPSAFVRLR 194 (518)
Q Consensus 140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~~ 194 (518)
..++|+|+|.+...++|+|++||.|.+++..++|||.++.. |+.||||.+|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 46889999999999999999999999999988999999965 99999999999753
No 46
>KOG1118|consensus
Probab=99.05 E-value=6.7e-11 Score=108.32 Aligned_cols=55 Identities=20% Similarity=0.411 Sum_probs=52.4
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS 61 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~ 61 (518)
..|+|+|||++++++||.|++||+|+|+.+.|++||.|+..|..|+||.+||...
T Consensus 307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vl 361 (366)
T KOG1118|consen 307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVL 361 (366)
T ss_pred hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEe
Confidence 5699999999999999999999999999999999999999999999999998854
No 47
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.02 E-value=6.8e-10 Score=78.50 Aligned_cols=51 Identities=41% Similarity=0.788 Sum_probs=47.3
Q ss_pred EEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECC-eeEEEcCCCEE
Q psy824 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVR 192 (518)
Q Consensus 142 ~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~ 192 (518)
++|+|+|.+...++|+|.+||.|.+++..++|||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 5799999999999999999999999999889999999655 99999999985
No 48
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.00 E-value=8.6e-10 Score=79.21 Aligned_cols=53 Identities=30% Similarity=0.593 Sum_probs=48.9
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeee
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIIN 59 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~ 59 (518)
..++|+|||.+..+++|+|++||.|.|++..+.|||.+++. ++.|+||..+++
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 56 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEE
Confidence 46899999999999999999999999999988999999988 888999987765
No 49
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.99 E-value=8.6e-10 Score=77.97 Aligned_cols=52 Identities=31% Similarity=0.556 Sum_probs=47.1
Q ss_pred EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC-eeEEEEeeeee
Q psy824 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-AFEHLSQIIIN 59 (518)
Q Consensus 8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~-~~g~~p~~~v~ 59 (518)
+++|+|||.++.+++|+|.+||+|.|++..++|||.++..+ +.|+||..+++
T Consensus 1 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 1 YVRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred CEEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 37899999999999999999999999999888999999877 88999977654
No 50
>KOG4225|consensus
Probab=98.97 E-value=7.3e-10 Score=106.52 Aligned_cols=62 Identities=29% Similarity=0.574 Sum_probs=57.3
Q ss_pred ccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197 (518)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~ 197 (518)
+.....++|+|+|.++...||+|.+||+|.|+.+.|..|++|+.+|+.|+||++||+++...
T Consensus 227 ~~~~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~ 288 (489)
T KOG4225|consen 227 EKPKRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPR 288 (489)
T ss_pred ccccchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcc
Confidence 34455689999999999999999999999999999999999999999999999999999863
No 51
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.88 E-value=6.6e-09 Score=81.86 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=49.9
Q ss_pred cceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824 452 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514 (518)
Q Consensus 452 r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~ 514 (518)
+.||++|.+.....+ ++|++|||+++||+||++ +.+|+||..|.++++.|.+..+++
T Consensus 2 geLlleg~l~~~~~~---~eR~vFLFe~~ll~~K~~---~~~y~~K~~i~~~~l~i~e~~~~d 58 (97)
T cd01222 2 GDLLLEGRFREHGGG---KPRLLFLFQTMLLIAKPR---GDKYQFKAYIPCKNLMLVEHLPGE 58 (97)
T ss_pred CceeeeceEEeecCC---CceEEEEecccEEEEEec---CCeeEEEEEEEecceEEecCCCCC
Confidence 579999999866553 489999999999999987 568999999999999999987764
No 52
>KOG2856|consensus
Probab=98.86 E-value=4.7e-10 Score=105.09 Aligned_cols=54 Identities=28% Similarity=0.449 Sum_probs=50.3
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeec
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINH 60 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~ 60 (518)
+.++|||||.+++.+||+|++||.+++++..| .||..|+++ |++|+||++||+.
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~ 470 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVEC 470 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhc
Confidence 78999999999999999999999999988777 699999998 8899999999974
No 53
>KOG0162|consensus
Probab=98.85 E-value=1.5e-09 Score=110.28 Aligned_cols=55 Identities=24% Similarity=0.501 Sum_probs=51.7
Q ss_pred ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH 60 (518)
Q Consensus 6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~ 60 (518)
...|.|+|||.+++.+||+|++||+|.++.++.+|||.|+.+|+.||||.+||.+
T Consensus 1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred CcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 3679999999999999999999999999999889999999999999999988863
No 54
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.80 E-value=5.5e-09 Score=79.52 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=49.1
Q ss_pred cceEeeeeEEEEecCcccceEEEEEeCCeEEEEeec--cC-CCCceEEEEEeecCCeeEEEcC
Q psy824 452 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD--IL-KRNTHVYKARLNIDTSQIINLP 511 (518)
Q Consensus 452 r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~--~~-~~~~~~~k~~i~l~~~~v~~~~ 511 (518)
|+|+.+|-++++.. +.++.|++|||||+|||++-+ +. +..+|..+..|||.++.+.+++
T Consensus 1 r~Lv~eg~lvel~~-~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~ 62 (96)
T cd01228 1 RQLVKDSFLVELVE-GSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP 62 (96)
T ss_pred Ccccccceeeeehh-CCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh
Confidence 78999999999974 447899999999999999943 22 3378999999999999987653
No 55
>KOG4269|consensus
Probab=98.80 E-value=1.7e-09 Score=112.06 Aligned_cols=259 Identities=17% Similarity=0.196 Sum_probs=188.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCC
Q psy824 225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWD 300 (518)
Q Consensus 225 ~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~----~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~ 300 (518)
.+--..|+.+.--++..|..|.+.+..+.- =+.|++. ..+.++...+.+||..+.+|+.+|..|-.-|....+.+
T Consensus 327 ek~~~~rkl~dS~f~~~d~~~~~s~d~l~l-~~~p~~al~~tsqp~~~~~~~~t~~~k~s~i~~~hk~~~~~l~pk~q~~ 405 (1112)
T KOG4269|consen 327 EKGLEMRKLVDSGFLASDEHYSQSLDALLL-PMKPLKALATTSQPVLTKQQIETIFNKFSPIYEIHKEFYDNLHPKVQQW 405 (1112)
T ss_pred hhhHHHHHHHhcccccccchhhcccchhhc-ccccccccCCCCCCCccccccccccccCCCchhhhhhhccccCchhhhh
Confidence 445577899999999999999999987754 2334432 33567788999999999999999999999888877543
Q ss_pred CCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcch--hhHHHH---HHhhcchHHHHHHHHHHHhhcc-----ccccCc
Q psy824 301 APYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSD--KDKWLL---FCCRSLEDKARWLAAFQQERAL-----VEQDRE 370 (518)
Q Consensus 301 ~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~--~~~a~~---~~~~~~~~~~~fl~~~~~~~~~-----~~~~~l 370 (518)
. .....|..|...+..+-. |..|..+ |..++. .|+..+++|...-.++....+. ....+.
T Consensus 406 ~-sqs~~~~~~~~L~S~l~n---------~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~~~ 475 (1112)
T KOG4269|consen 406 K-SQSNSGGLFQKLASQLGN---------YLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWKDE 475 (1112)
T ss_pred h-hhhccCccchhhhhhcch---------hhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCccch
Confidence 3 367889999999888877 5555555 555542 4566667666543333221110 011125
Q ss_pred cCCCcchhhHHHHHHHhhhhccCCCCCCCCChH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy824 371 DGLEFAPAAKELARMSAARCHSSRPPTDHPDYV----------KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE 440 (518)
Q Consensus 371 ~~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~----------~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~ 440 (518)
...|.+|+-|..+.-+-|-+++|++|-.|||+- .|+.|++....++..+|+..... ++.+..+.+
T Consensus 476 ~~~l~rpi~~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~~----r~~~f~ks~- 550 (1112)
T KOG4269|consen 476 EWLLYRPIDRVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEPR----RLLEFLKSG- 550 (1112)
T ss_pred hhhhccchhhhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchh----hhhhhcccc-
Confidence 568899999999999999999999999999998 99999999999999999855432 222221222
Q ss_pred cCCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC---CCCceEEEEEeecCCeeEEE
Q psy824 441 GWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL---KRNTHVYKARLNIDTSQIIN 509 (518)
Q Consensus 441 ~~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~---~~~~~~~k~~i~l~~~~v~~ 509 (518)
..|++++.+-+..+.. ..++.+++|+|.+.++++|-+.. +...|..++.||+-+..|..
T Consensus 551 ---------~~rq~L~d~f~~~v~~-~~~~~~~~~~~~~~ll~tk~~~~k~~~nq~y~~~~~Ipl~d~~v~~ 612 (1112)
T KOG4269|consen 551 ---------ELRQLLKDVFFVEVEE-AQRKLRHVFLFTNSLLCTKLKKLKDGKNQQYDCKWYIPLKDLQVNR 612 (1112)
T ss_pred ---------hhHhhhhhheeecccc-ccccchhhHHHhhccchhhhhhhcccccccCceeEEEeccccccCC
Confidence 2378888887666644 33568899999999999995432 33678999999999988754
No 56
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.77 E-value=3.1e-08 Score=79.83 Aligned_cols=60 Identities=25% Similarity=0.488 Sum_probs=50.1
Q ss_pred ceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccC-CCCceEEEEEeecCCeeEEEcCC
Q psy824 453 QLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDIL-KRNTHVYKARLNIDTSQIINLPD 512 (518)
Q Consensus 453 ~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~-~~~~~~~k~~i~l~~~~v~~~~d 512 (518)
.||++|.|.+++... ..++||+|||||+||+|+++.. ....|.+++.|+|+.|.|.+..+
T Consensus 1 e~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~ 62 (101)
T cd01219 1 ELLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN 62 (101)
T ss_pred CcccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC
Confidence 489999999998753 4678999999999999996532 34679999999999999998754
No 57
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.76 E-value=3.6e-08 Score=80.74 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=52.2
Q ss_pred cceEeeeeEEEEecCc---------ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824 452 SQLIHQGEVIRVTSGM---------WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG 515 (518)
Q Consensus 452 r~ll~~g~l~~~~~~~---------~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~ 515 (518)
|.|++.|+|+.+.... ..+++|+|||||+||+||++. +.+|.+....+.+.+.|.++++...
T Consensus 1 RwLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~--~~~f~V~dy~~r~~l~V~~~e~~~~ 71 (125)
T cd01221 1 RWLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKL--GSTFVVFDYAPRSFLRVEKIEPDNQ 71 (125)
T ss_pred CceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecC--CCeEEEEeeccccceEEeecccccc
Confidence 6899999998885432 246899999999999999884 7899999999999999998876543
No 58
>KOG2856|consensus
Probab=98.76 E-value=1.1e-08 Score=96.11 Aligned_cols=55 Identities=33% Similarity=0.602 Sum_probs=50.1
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEEC-CeeEEEcCCCEEEc
Q psy824 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EASGWFPSAFVRLR 194 (518)
Q Consensus 140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~ 194 (518)
+.++|||||.++..+||+|+.||.++++...| .||..|+++ |+.|++|+|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 78999999999999999999999999887655 799999966 99999999999854
No 59
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.75 E-value=3e-08 Score=80.67 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=53.6
Q ss_pred cceEeeeeEEEEecCc----ccceEEEEEeCCeEEEEeeccC----CCCceEEEEEeecCCeeEEEcCCCCC
Q psy824 452 SQLIHQGEVIRVTSGM----WTNTITLFLFDHQLVYCKRDIL----KRNTHVYKARLNIDTSQIINLPDGKG 515 (518)
Q Consensus 452 r~ll~~g~l~~~~~~~----~~~~~~~fLF~d~ll~~k~~~~----~~~~~~~k~~i~l~~~~v~~~~d~~~ 515 (518)
++||.+|.+.+..... +.++|++|||+|+||+||+... +...|+||+.|++++|.+++..+|+.
T Consensus 3 G~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~ 74 (114)
T cd01232 3 GKLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDP 74 (114)
T ss_pred CceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCC
Confidence 6799999988877642 4579999999999999997543 24589999999999999999888764
No 60
>KOG4792|consensus
Probab=98.70 E-value=8.6e-09 Score=90.52 Aligned_cols=60 Identities=20% Similarity=0.481 Sum_probs=55.3
Q ss_pred ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQ 197 (518)
Q Consensus 138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~ 197 (518)
...+++++|||.+.+.++|.|++|++++|+++.+..||.++ ..|+.|++|..||+...+.
T Consensus 123 ~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~ 183 (293)
T KOG4792|consen 123 EAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPA 183 (293)
T ss_pred hhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhh
Confidence 34678999999999999999999999999999999999999 8999999999999987654
No 61
>KOG1264|consensus
Probab=98.67 E-value=7.9e-09 Score=106.17 Aligned_cols=57 Identities=23% Similarity=0.492 Sum_probs=52.9
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCee-EEEEeeeeeccCC
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAF-EHLSQIIINHSIS 63 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~-g~~p~~~v~~~~~ 63 (518)
+.|+|||||.|+.+|||||.+|-+|+++.+.++|||+|..+|.. +|||++||++..+
T Consensus 775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 56999999999999999999999999999999999999999865 9999999997754
No 62
>KOG2546|consensus
Probab=98.60 E-value=5.4e-08 Score=93.50 Aligned_cols=57 Identities=28% Similarity=0.532 Sum_probs=53.6
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 195 (518)
...++++|||.+...+||+|.+|-+|.|+.+.|+|||+|..+|..|+||.|||+.+.
T Consensus 423 LEkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 423 LEKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 355789999999999999999999999999999999999999999999999999875
No 63
>KOG2546|consensus
Probab=98.54 E-value=3.2e-08 Score=95.06 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=50.9
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH 60 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~ 60 (518)
..++|+|||.+..++||+|.+|-+|.|+++.|+|||+|.++|..|+||.+||+.
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~ 477 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEP 477 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccc
Confidence 347899999999999999999999999999999999999999999999999874
No 64
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.53 E-value=3.1e-07 Score=71.95 Aligned_cols=61 Identities=16% Similarity=0.336 Sum_probs=51.6
Q ss_pred ceEeeeeEEEEecCcc--cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824 453 QLIHQGEVIRVTSGMW--TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG 515 (518)
Q Consensus 453 ~ll~~g~l~~~~~~~~--~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~ 515 (518)
.+|++|.+..++.+.. .+.+++|||||+||++.... +.+|.+...++|+++.|.+++|.+.
T Consensus 1 ~~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~--~~ky~~~~~~~L~~i~V~ni~D~~~ 63 (100)
T cd01226 1 KVILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINA--AGKYVMESTYSLNSVAVVNVKDREN 63 (100)
T ss_pred CEEEcCcEEEechhhCCccceEEEEEeccEEEEEEecc--cceEEEEEEEehHHeEEEecCCCcC
Confidence 3799999999987654 34567999999999998764 3479999999999999999999864
No 65
>KOG1264|consensus
Probab=98.51 E-value=3.9e-08 Score=101.24 Aligned_cols=59 Identities=31% Similarity=0.638 Sum_probs=54.5
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECC-eeEEEcCCCEEEcccC
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQ 197 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~~ 197 (518)
.+.|+|||||.|+.++||+|.+|.+|+.+++...|||.|..+| ..||||++||+.|...
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence 4789999999999999999999999999999999999999886 6799999999998863
No 66
>KOG0515|consensus
Probab=98.45 E-value=7.3e-08 Score=94.95 Aligned_cols=56 Identities=30% Similarity=0.706 Sum_probs=50.5
Q ss_pred EEEEeecCCCCCCCCCCCCCCCEEEEEecCC---CCeEEEEECCeeEEEcCCCEEEccc
Q psy824 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD---RDWWWGTRGEASGWFPSAFVRLRVS 196 (518)
Q Consensus 141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~~~ 196 (518)
.+-|+|||.|+..|||+|++||.++|+.++| .+||+++++|+.|+||.+|+-.+..
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr 743 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR 743 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence 4678999999999999999999999999855 5899999999999999999976643
No 67
>KOG3655|consensus
Probab=98.44 E-value=3e-07 Score=90.11 Aligned_cols=57 Identities=32% Similarity=0.618 Sum_probs=53.2
Q ss_pred ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEc
Q psy824 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLR 194 (518)
Q Consensus 138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~ 194 (518)
.+..++|+|||.|.++.|++|..+|.|.+++..+.|||.|. -.|..|+||+|||+++
T Consensus 426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred cCCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 34678999999999999999999999999999999999999 6899999999999876
No 68
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.42 E-value=7e-07 Score=74.40 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=50.9
Q ss_pred cceEeeeeEEEEecCc-----------ccceEEEEEeCCeEEEEeeccCC-----CCceEEEEEeecCCeeEEEcCCCCC
Q psy824 452 SQLIHQGEVIRVTSGM-----------WTNTITLFLFDHQLVYCKRDILK-----RNTHVYKARLNIDTSQIINLPDGKG 515 (518)
Q Consensus 452 r~ll~~g~l~~~~~~~-----------~~~~~~~fLF~d~ll~~k~~~~~-----~~~~~~k~~i~l~~~~v~~~~d~~~ 515 (518)
++||++|.+.+....+ +.++|++|||..+||+||++..+ ..+|.||..|.|+++.+.+..+|+.
T Consensus 1 G~ll~Qd~f~Vw~~~~~~~~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~ 80 (133)
T cd01227 1 GKLLMQGSFSVWTDHKKGHTKKELARFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDT 80 (133)
T ss_pred CCceEecceEEEEccccccchhhhhccCCceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCc
Confidence 4689999988865421 24689999999999999987432 2489999999999999998766653
No 69
>KOG1702|consensus
Probab=98.39 E-value=2.2e-07 Score=80.29 Aligned_cols=57 Identities=26% Similarity=0.518 Sum_probs=52.1
Q ss_pred ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEc
Q psy824 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR 194 (518)
Q Consensus 138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~ 194 (518)
.....+|.|||.|++.+|++|..||.|.-.+..++||.+|. ..|..|..|+||++.+
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 44678999999999999999999999998999999999988 6899999999999864
No 70
>KOG0515|consensus
Probab=98.33 E-value=2e-07 Score=91.94 Aligned_cols=51 Identities=27% Similarity=0.592 Sum_probs=44.8
Q ss_pred EEEEecCCCCCCCCCcccCCCCEEEEEEecC---CCeeEEEeCCeeEEEEeeee
Q psy824 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD---RDWWWGTRGEAFEHLSQIII 58 (518)
Q Consensus 8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~---~~Ww~g~~~~~~g~~p~~~v 58 (518)
.+-|||||+|+.+|||+|.+||-++|+.+.| .+||+++++|..|+.|.+|.
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnyl 738 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYL 738 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhh
Confidence 4678999999999999999999999999866 48999999999888885543
No 71
>KOG3601|consensus
Probab=98.28 E-value=3.1e-07 Score=80.56 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=51.4
Q ss_pred CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824 5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN 59 (518)
Q Consensus 5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~ 59 (518)
...++.|+|||.++.+++|.|++||++.|+...+..||.|.+.|..|+||+.+|-
T Consensus 162 ~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~ 216 (222)
T KOG3601|consen 162 TNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVA 216 (222)
T ss_pred cchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccc
Confidence 4578999999999999999999999999999999999999999999999987765
No 72
>KOG1843|consensus
Probab=98.26 E-value=3.9e-07 Score=87.30 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=49.6
Q ss_pred EEEEecCCCCCCCCCcccCCCCEEEEEEecC--CCeeEEEeCCeeEEEEeeeee
Q psy824 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEAFEHLSQIIIN 59 (518)
Q Consensus 8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~--~~Ww~g~~~~~~g~~p~~~v~ 59 (518)
.++|+|+|.++..++|+|++||+|.++++.+ .+||.|+.++..|+||++||+
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~ 471 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVS 471 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceec
Confidence 7999999999999999999999999999988 599999999999999999986
No 73
>KOG1843|consensus
Probab=98.14 E-value=1.1e-06 Score=84.34 Aligned_cols=55 Identities=33% Similarity=0.720 Sum_probs=51.2
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC--CCeEEEEECCeeEEEcCCCEEE
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 193 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~ 193 (518)
+..+.++|+|..+...+|+|++||+|+++++.+ .+||.|+.+|++|+||+|||++
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 458899999999999999999999999999876 7899999999999999999974
No 74
>KOG3655|consensus
Probab=98.11 E-value=7.4e-07 Score=87.44 Aligned_cols=54 Identities=24% Similarity=0.486 Sum_probs=49.0
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeec
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINH 60 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~ 60 (518)
-.|+|+|||.|.++.|++|..+|.|.+++..|+|||.|.. +|.+|+||++||+-
T Consensus 428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~l 482 (484)
T KOG3655|consen 428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVEL 482 (484)
T ss_pred CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCccccccccc
Confidence 3589999999999999999999999999999999999986 46679999999874
No 75
>KOG1702|consensus
Probab=98.06 E-value=2.8e-06 Score=73.63 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=48.9
Q ss_pred CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeee
Q psy824 5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIIN 59 (518)
Q Consensus 5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~ 59 (518)
.+...+|.|||.|+.++|++|.-||.|..+...|+||.+|++ .|..|+.|++|++
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie 262 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIE 262 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhhee
Confidence 346789999999999999999999999999999999988875 4677999998886
No 76
>KOG3875|consensus
Probab=98.05 E-value=6.4e-07 Score=82.78 Aligned_cols=58 Identities=28% Similarity=0.512 Sum_probs=50.7
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-----CCeEEEE-E-CCeeEEEcCCCEEEccc
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-----RDWWWGT-R-GEASGWFPSAFVRLRVS 196 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-----~~w~~~~-~-~g~~G~~P~~~v~~~~~ 196 (518)
-..|+|+|||.+.++.||+|++||.+.|..+.+ .+||... . +|..||||.|||+++..
T Consensus 268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 367899999999999999999999999987755 4588877 4 78999999999999876
No 77
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.94 E-value=1.4e-05 Score=64.30 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=47.6
Q ss_pred cceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCC--CCceEEEEEeecCCeeEEEcC
Q psy824 452 SQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILK--RNTHVYKARLNIDTSQIINLP 511 (518)
Q Consensus 452 r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~--~~~~~~k~~i~l~~~~v~~~~ 511 (518)
++++..|++...+... ..++||+|||+-+||+||++... ...|.||+.+.|..+.|++.+
T Consensus 2 GR~~~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~ 64 (116)
T cd01223 2 GRPLLDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNP 64 (116)
T ss_pred CccccCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecC
Confidence 4677888876655533 36799999999999999987432 345999999999999988765
No 78
>KOG0931|consensus
Probab=97.93 E-value=6.7e-05 Score=73.22 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=88.4
Q ss_pred ccCCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccc
Q psy824 370 EDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIE 449 (518)
Q Consensus 370 l~~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~ 449 (518)
+-+--++|-+|+..-- ++++|.---....-+++.|.-.+++|+.---..|+ +....+..+.+.|-|-+..-|..
T Consensus 339 mySPnVKperkM~leD-FikNLRGvDnGeDIpRell~GIYeRIqk~ELktnd-----DHVsqVqkVer~IVGkk~~vLs~ 412 (627)
T KOG0931|consen 339 MYSPNVKPERKMKLED-FIKNLRGVDNGEDIPRELLVGIYERIQKRELKTND-----DHVSQVQKVERAIVGKKPPVLSL 412 (627)
T ss_pred ccCCCCCHHHhhhHHH-HHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCc-----chHHHHHHHHHHHhcCCCccccc
Confidence 4455567766643221 23333222223344677777777777654333333 33455566678898876656888
Q ss_pred cccceEeeeeEEEEecCcc-----cceEEEEEeCCeEEEEe--eccCCCCceEEEEEeecCCeeEEE
Q psy824 450 TSSQLIHQGEVIRVTSGMW-----TNTITLFLFDHQLVYCK--RDILKRNTHVYKARLNIDTSQIIN 509 (518)
Q Consensus 450 ~~r~ll~~g~l~~~~~~~~-----~~~~~~fLF~d~ll~~k--~~~~~~~~~~~k~~i~l~~~~v~~ 509 (518)
+.|+|++...|+.+....+ .+.|-+|||||+||++| ++.+...+|+|++.+.|-.|.|..
T Consensus 413 phRRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV~K~~~kkk~s~TYtf~qs~~Llgmhv~l 479 (627)
T KOG0931|consen 413 PHRRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVVTKIFQKKKTSVTYTFRQSFLLLGMHVQL 479 (627)
T ss_pred CCceEEEEEeeeecCCCCchhhcccccceeeeecchhhhhhhhccCcceeEeehhhhhhHHHHHHHH
Confidence 8999999999999876443 45889999999999999 343344689999988887776543
No 79
>KOG3875|consensus
Probab=97.92 E-value=1.1e-06 Score=81.14 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=46.2
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-----CCeeEEEe--CCeeEEEEeeeeecc
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-----RDWWWGTR--GEAFEHLSQIIINHS 61 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-----~~Ww~g~~--~~~~g~~p~~~v~~~ 61 (518)
+.|+|+|||.|.++.||+|++||.+.|.-+.| .+||..+. ++..|++|.+||+..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi 330 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKII 330 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhh
Confidence 56999999999999999999999999987766 25887654 345599999999965
No 80
>KOG3523|consensus
Probab=97.75 E-value=2.6e-06 Score=85.83 Aligned_cols=59 Identities=29% Similarity=0.526 Sum_probs=54.1
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEcccC
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ 197 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~ 197 (518)
...+.+...|.|..+|||+++.+|++.|+.+..+||.+|+ .+|..||||.+||+.|.+.
T Consensus 608 cpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~ 668 (695)
T KOG3523|consen 608 CPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP 668 (695)
T ss_pred CChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence 3467788999999999999999999999999999999999 6899999999999998764
No 81
>KOG2222|consensus
Probab=97.67 E-value=5.8e-06 Score=80.80 Aligned_cols=58 Identities=34% Similarity=0.672 Sum_probs=53.9
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 196 (518)
...++|+.||.-..++||.|+++|+|+++...|...|.|+.+|-+||||+.||+.+..
T Consensus 548 ~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellde 605 (848)
T KOG2222|consen 548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDE 605 (848)
T ss_pred hHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHh
Confidence 4568899999999999999999999999999999999999999999999999997754
No 82
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=97.63 E-value=4.2e-05 Score=64.70 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=31.7
Q ss_pred eEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCC-CCce-EEEEEeecCCeeEEEcCCCC
Q psy824 454 LIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILK-RNTH-VYKARLNIDTSQIINLPDGK 514 (518)
Q Consensus 454 ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~-~~~~-~~k~~i~l~~~~v~~~~d~~ 514 (518)
||++|+|.+...+. ...+.++|||+++||+||.+..+ ...| +++.+|||+-+.|+..+|.-
T Consensus 1 Li~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~ 64 (135)
T PF15405_consen 1 LIYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPP 64 (135)
T ss_dssp ----------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTT
T ss_pred CccccccccccccccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCC
Confidence 68899998876543 23489999999999999976432 2344 66899999999999877653
No 83
>KOG2222|consensus
Probab=97.61 E-value=1.1e-05 Score=78.81 Aligned_cols=52 Identities=25% Similarity=0.468 Sum_probs=49.2
Q ss_pred EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN 59 (518)
Q Consensus 8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~ 59 (518)
.|+||.||.-..++||.|+++|+|+++...|+-.|.|+.+|-.||||+-+|+
T Consensus 550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfve 601 (848)
T KOG2222|consen 550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVE 601 (848)
T ss_pred HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHH
Confidence 4789999999999999999999999999999999999999999999988877
No 84
>KOG3725|consensus
Probab=97.56 E-value=2.8e-05 Score=70.00 Aligned_cols=56 Identities=30% Similarity=0.540 Sum_probs=51.0
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEEEEec--CCCCeEEEEECCeeEEEcCCCEEEc
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEASGWFPSAFVRLR 194 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~ 194 (518)
...++++|||++..+.||++-..++|+|..- .|++|..|+.+++.|-+|.+|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 4679999999999999999999999999875 5689999999999999999999764
No 85
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.55 E-value=0.00045 Score=54.83 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=55.7
Q ss_pred CCCccccccccceEeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCCC
Q psy824 442 WEGEDLIETSSQLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGR 516 (518)
Q Consensus 442 ~~~~~l~~~~r~ll~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~ 516 (518)
|+|.++-.- +..|+...|...... ....+||++||...|++..... +...|.|++.+||..+.|+.++|.+.+
T Consensus 1 Weg~~i~~l-G~vi~mS~V~~~~~~~qe~~eRyLvLFp~~LlilS~s~-r~sGf~yqGkLPL~~i~v~~lEd~e~~ 74 (111)
T cd01225 1 WEGQDIKTL-GNVIHMSQVAVQYGAGEEKRERYLVLFPNVLLMLSASP-RMSGFIYQGKLPLTGIIVTRLEDTEAL 74 (111)
T ss_pred CCCcchhhc-CceEEEEEEEEecCCccccceeEEEEcCceEEEEEcCC-CccceEEeeeecccccEEechHhccCc
Confidence 456555554 678888887665332 3467999999999999998632 245799999999999999998887764
No 86
>KOG3771|consensus
Probab=97.53 E-value=0.00014 Score=72.11 Aligned_cols=58 Identities=26% Similarity=0.229 Sum_probs=49.3
Q ss_pred ccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEEE
Q psy824 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRL 193 (518)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~ 193 (518)
.+....+.++|||.+++.++|+|+.||+|.|+...+ +.||.|++.|..+-+|.+|+..
T Consensus 397 p~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~~ 455 (460)
T KOG3771|consen 397 PGFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFPL 455 (460)
T ss_pred CCCccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccceec
Confidence 345567899999999999999999999999998544 7899999988888777777753
No 87
>KOG4773|consensus
Probab=97.52 E-value=1.4e-05 Score=75.34 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=51.0
Q ss_pred EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI 62 (518)
Q Consensus 8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~ 62 (518)
.+.|++||.++...||.|.+||++.++.+.+.+||.|+.+|..|+||.+|+..-.
T Consensus 177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld 231 (386)
T KOG4773|consen 177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLD 231 (386)
T ss_pred HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhc
Confidence 4678999999999999999999999999999999999999999999999988553
No 88
>KOG4278|consensus
Probab=97.52 E-value=8e-05 Score=76.03 Aligned_cols=62 Identities=27% Similarity=0.441 Sum_probs=51.8
Q ss_pred ccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEE-ECCeeEEEcCCCEEEcccCC
Q psy824 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLRVSQE 198 (518)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~~~~~ 198 (518)
+..+...+|||||.+..++.|++.+||.+.|+.-.. ..|.+++ .+|+ ||||.||+.++..-+
T Consensus 87 endpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSLe 150 (1157)
T KOG4278|consen 87 ENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSLE 150 (1157)
T ss_pred cCCCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccchh
Confidence 344568899999999999999999999999998654 6688888 5666 999999999887543
No 89
>KOG3632|consensus
Probab=97.49 E-value=0.0002 Score=76.22 Aligned_cols=62 Identities=26% Similarity=0.392 Sum_probs=52.9
Q ss_pred cceeEEEEeecCCCC--------CCCCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824 137 DFVVLAEAVWDHVAM--------EAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRLRVSQE 198 (518)
Q Consensus 137 ~~~~~~~a~~~~~~~--------~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~~~ 198 (518)
....+.+|+|||++. ...||.|++|++|.|+...| +|++.|+++|+.|++|.|+|..+....
T Consensus 1136 lparifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1136 LPARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred CcceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCc
Confidence 456788999999865 23599999999999998655 899999999999999999998877554
No 90
>KOG1451|consensus
Probab=97.38 E-value=0.00061 Score=68.75 Aligned_cols=56 Identities=23% Similarity=0.435 Sum_probs=49.4
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCEEE-EEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDVIE-VLDTLDRDWWWGTRGEASGWFPSAFVRLR 194 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~-v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 194 (518)
...+.++|...|....+++|..|.++. |.....+||..|+++|+.|++|.|||+++
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 456788999999999999999999996 45566799999999999999999999863
No 91
>KOG3771|consensus
Probab=97.31 E-value=9.1e-05 Score=73.27 Aligned_cols=56 Identities=27% Similarity=0.233 Sum_probs=46.2
Q ss_pred cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeee
Q psy824 4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIIN 59 (518)
Q Consensus 4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~ 59 (518)
.....++|+|||.++..+||+|+.||+|.|+...+ +.||.|.+.|..+.++..|+.
T Consensus 398 ~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 398 GFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred CCccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 34567899999999999999999999999998655 789999988876666544443
No 92
>KOG4429|consensus
Probab=97.30 E-value=6.6e-05 Score=68.95 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=49.8
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH 60 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~ 60 (518)
+.|.|+|.|+++.++||....||++.+-++.++|||.|++.|.+|.||+.++++
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEe 417 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEE 417 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHH
Confidence 458899999999999999999999999999899999999999999999877764
No 93
>KOG0197|consensus
Probab=97.25 E-value=0.00016 Score=72.74 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=58.1
Q ss_pred ccCceEEEEecCCCCCCCCCcccCCCCE-EEEEEecCCCeeEEEeC--CeeEEEEeeeeeccCCCCCCCCCccccCCCcc
Q psy824 3 EDFVVLAEAVWDHVAMEAEELGFRAGDV-IEVLDTLDRDWWWGTRG--EAFEHLSQIIINHSISPNCDISKSLKRIRPHH 79 (518)
Q Consensus 3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~-i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~ 79 (518)
.....+++|+|||.+..+.+|+|.+||+ ..+++..+..||+.+.. +..|..|+++|......+...+.+..+|.+..
T Consensus 8 ~~~~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~ 87 (468)
T KOG0197|consen 8 PSHETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGK 87 (468)
T ss_pred ccccceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhcc
Confidence 3446789999999999999999999999 88888888999997654 56689999988865433333444444554433
No 94
>KOG4278|consensus
Probab=97.20 E-value=0.00032 Score=71.83 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=46.3
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeee
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIIN 59 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~ 59 (518)
-..+|||||.|..++.||+.+||.+.|+.-.. +.|..++..++.||.|++|+.
T Consensus 91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyIt 144 (1157)
T KOG4278|consen 91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYIT 144 (1157)
T ss_pred ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccc
Confidence 36899999999999999999999999998654 678888876677999988876
No 95
>KOG2528|consensus
Probab=97.19 E-value=0.00012 Score=71.41 Aligned_cols=56 Identities=23% Similarity=0.434 Sum_probs=51.0
Q ss_pred EEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLRVS 196 (518)
Q Consensus 141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~~~ 196 (518)
.++++|||.+.+..|++...||++.+..... .|||.|. ..|..|+||+.||+++..
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~ 61 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRL 61 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeecc
Confidence 5789999999999999999999999987654 8999999 899999999999998763
No 96
>KOG4429|consensus
Probab=97.14 E-value=0.00012 Score=67.30 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=50.8
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194 (518)
Q Consensus 140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 194 (518)
..+.++|.|.+..++||....||++.+-++...|||.|++.|..|-||+.|++..
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 4678999999999999999999999888888899999999999999999998754
No 97
>KOG0609|consensus
Probab=97.12 E-value=0.0002 Score=72.06 Aligned_cols=50 Identities=26% Similarity=0.548 Sum_probs=41.8
Q ss_pred ceEEEEecCCCCCCCC-------CcccCCCCEEEEEEecCCCeeEEEeCCe-----eEEEEe
Q psy824 6 VVLAEAVWDHVAMEAE-------ELGFRAGDVIEVLDTLDRDWWWGTRGEA-----FEHLSQ 55 (518)
Q Consensus 6 ~~~~~al~d~~~~~~~-------eL~~~~gd~i~v~~~~~~~Ww~g~~~~~-----~g~~p~ 55 (518)
+++++|+|||.+..++ -|+|++||++.|+.++|..||.++..|. -|.+|+
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS 275 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPS 275 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccC
Confidence 4789999999998755 5899999999999999999999876552 266664
No 98
>KOG4773|consensus
Probab=96.96 E-value=8.8e-05 Score=70.12 Aligned_cols=57 Identities=30% Similarity=0.448 Sum_probs=53.0
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196 (518)
Q Consensus 140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 196 (518)
..+.+++||......||.|..||++.++.+++.+||.|...|..||+|.+|++.+..
T Consensus 176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~ 232 (386)
T KOG4773|consen 176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDD 232 (386)
T ss_pred HHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhcc
Confidence 457889999999999999999999999999999999999999999999999998843
No 99
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.89 E-value=0.0009 Score=53.15 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=51.0
Q ss_pred cccccceEeeeeEEEEecCc--ccceEEEEEeCCeEEEEeeccC-----C--------CCceEEEEEeecCCee-EEEcC
Q psy824 448 IETSSQLIHQGEVIRVTSGM--WTNTITLFLFDHQLVYCKRDIL-----K--------RNTHVYKARLNIDTSQ-IINLP 511 (518)
Q Consensus 448 ~~~~r~ll~~g~l~~~~~~~--~~~~~~~fLF~d~ll~~k~~~~-----~--------~~~~~~k~~i~l~~~~-v~~~~ 511 (518)
+...|.|+...+++.++... +.....+|||||.|=+||++++ + ...|+.-..+||..++ |.|+.
T Consensus 2 lSShRs~v~r~e~~eL~d~l~grGe~~tlFLfsD~lEi~kkR~kv~~~~KSP~~~~~~~~~~KHi~lmpLs~IkrVvdI~ 81 (129)
T cd01229 2 LSSHRSLVQRVETISLGEHLCDRGEQVTLFLFNDCLEIARKRHKVIGTFKSPHGSTRPPASLKHIHLMPLSQIKKVLDIR 81 (129)
T ss_pred ccchhhhhheeeeeeecccccCCCCeEEEEEecchHHHhhhcccccCCcCCCCCCCCCCcccceEEEeEhHHeEEEEeee
Confidence 44568888888888776542 2458899999999999998752 1 1235555689999998 79999
Q ss_pred CCCC
Q psy824 512 DGKG 515 (518)
Q Consensus 512 d~~~ 515 (518)
|.|+
T Consensus 82 DtE~ 85 (129)
T cd01229 82 DTED 85 (129)
T ss_pred cccc
Confidence 9865
No 100
>PF15411 PH_10: Pleckstrin homology domain
Probab=96.78 E-value=0.0033 Score=51.57 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=43.6
Q ss_pred cceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC---------------CCCceEEEEEeecCCee
Q psy824 452 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL---------------KRNTHVYKARLNIDTSQ 506 (518)
Q Consensus 452 r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~---------------~~~~~~~k~~i~l~~~~ 506 (518)
++|+..|.+.+... ...+++++|||..+|||||.... +...+.+|++|.+.++.
T Consensus 5 G~Lll~g~~~V~k~-~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~ 73 (116)
T PF15411_consen 5 GELLLHGTLTVGKD-DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNIT 73 (116)
T ss_pred cceEEccEEEEEeC-CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeee
Confidence 68999999888765 44679999999999999995331 23568999999999875
No 101
>KOG4575|consensus
Probab=96.77 E-value=0.0011 Score=67.33 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=41.9
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCe--eEEEEeeee
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEA--FEHLSQIII 58 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~--~g~~p~~~v 58 (518)
..++|+|.+.++.+++|.|.+||+|+++.-.| |||++.+ .++ .|+||+++|
T Consensus 9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~d-gkwwi~lhrNk~~~g~fpsNFv 62 (874)
T KOG4575|consen 9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIED-GKWWILLHRNKDEDGLFPSNFV 62 (874)
T ss_pred ceEEeeccCCCCcccccceecccceeEEeecc-ceeeeeeeecccccccCcccce
Confidence 45899999999999999999999999997755 6666543 333 399999888
No 102
>KOG3775|consensus
Probab=96.73 E-value=0.00074 Score=64.45 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=52.6
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEcccCC
Q psy824 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQE 198 (518)
Q Consensus 140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~~ 198 (518)
..-++++.|.+..++||.+..||-|.|-...++-|.+|. ..|++|+||+.|+-.+...+
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~e 323 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPE 323 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCch
Confidence 345889999999999999999999999998899999998 68999999999998876543
No 103
>KOG0609|consensus
Probab=96.67 E-value=0.00093 Score=67.38 Aligned_cols=54 Identities=30% Similarity=0.615 Sum_probs=46.3
Q ss_pred eeEEEEeecCCCCCCC-------CCCCCCCCEEEEEecCCCCeEEEEEC-----CeeEEEcCCCEE
Q psy824 139 VVLAEAVWDHVAMEAE-------ELGFRAGDVIEVLDTLDRDWWWGTRG-----EASGWFPSAFVR 192 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~-------eL~~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~ 192 (518)
.++++|+|||++..++ .|+|.+||++.|+++.|..||.++.. +..|++|+...+
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q 279 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ 279 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence 5789999999988664 69999999999999999999999832 577999987664
No 104
>KOG3557|consensus
Probab=96.64 E-value=0.00065 Score=69.47 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=53.6
Q ss_pred ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccCCC
Q psy824 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQED 199 (518)
Q Consensus 138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~ 199 (518)
...++.++|||.+++..||++.+||++.|+.. ..+||.++ ..|+.|++|.+.+..+.....
T Consensus 499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~ 560 (721)
T KOG3557|consen 499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPEHT 560 (721)
T ss_pred cceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCccc
Confidence 44589999999999999999999999999975 45899999 789999999999998876544
No 105
>KOG2528|consensus
Probab=96.63 E-value=0.0011 Score=65.04 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=48.7
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeeccC
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINHSI 62 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~~~ 62 (518)
-.+||+|||.+...+||+...||++.+..... +|||.|.+. |..|.||+-||+...
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred cchhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 35899999999999999999999999987766 899999865 556999999998654
No 106
>KOG0197|consensus
Probab=96.54 E-value=0.00084 Score=67.77 Aligned_cols=56 Identities=32% Similarity=0.671 Sum_probs=50.1
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCE-EEEEecCCCCeEEEE--ECCeeEEEcCCCEEEc
Q psy824 139 VVLAEAVWDHVAMEAEELGFRAGDV-IEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR 194 (518)
Q Consensus 139 ~~~~~a~~~~~~~~~~eL~~~~g~~-i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~ 194 (518)
...+.|+|||.+....+|+|..||+ ..+++..+..||.++ ..|..|++|.|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3578999999999999999999999 778888889999988 3799999999999864
No 107
>KOG4575|consensus
Probab=96.48 E-value=0.0031 Score=64.35 Aligned_cols=56 Identities=30% Similarity=0.560 Sum_probs=46.5
Q ss_pred ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--E-CCeeEEEcCCCEEEc
Q psy824 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--R-GEASGWFPSAFVRLR 194 (518)
Q Consensus 138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~-~g~~G~~P~~~v~~~ 194 (518)
.+.+++|+|-+.++..++|.|-+||+|+++...+ |||++. . ....|+||.|||..+
T Consensus 7 ~p~~vrA~y~w~ge~eGdl~f~egDlie~trI~d-gkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 7 LPCMVRALYAWPGEREGDLKFTEGDLIEQTRIED-GKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred CCceEEeeccCCCCcccccceecccceeEEeecc-ceeeeeeeecccccccCcccceeec
Confidence 3578999999999999999999999999998765 565554 2 467899999999544
No 108
>KOG3565|consensus
Probab=96.10 E-value=0.0015 Score=69.30 Aligned_cols=59 Identities=12% Similarity=0.398 Sum_probs=52.4
Q ss_pred cceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEE--ECCeeEEEcCCCEEEcc
Q psy824 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT--RGEASGWFPSAFVRLRV 195 (518)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~~~~ 195 (518)
+....+.|+|.|.+.++++++...|+++.+++... +||-+++ .+|..|.+|.+|++...
T Consensus 576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 45678899999999999999999999999998754 8999999 78999999999998653
No 109
>KOG3524|consensus
Probab=95.85 E-value=0.031 Score=58.21 Aligned_cols=182 Identities=5% Similarity=-0.057 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy824 229 QVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYK 304 (518)
Q Consensus 229 ~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~----~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~ 304 (518)
-.+.....+|++|+-+|+..+-..+..+..|+.. ........++..+|..+.+++..|...-.++++...-.-|
T Consensus 393 y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e~k~el~kayp-- 470 (850)
T KOG3524|consen 393 YCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIEAKEELKKAYP-- 470 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHHHHHHHHHhcc--
Confidence 3456688899999999999987777778888753 2234557899999999988877776665555543321111
Q ss_pred CchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHH
Q psy824 305 SCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELAR 384 (518)
Q Consensus 305 ~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y 384 (518)
.|.++ |+.|-+ ...||.-...-...+++.++.+.+|.+.-.....++...+|++ ++.|+|++.+
T Consensus 471 -----pyvnf---fet~ke------~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlps-villlndl~k- 534 (850)
T KOG3524|consen 471 -----PYVNF---FETIKE------LFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPS-VILLLNDMAK- 534 (850)
T ss_pred -----chhhH---HHHhHH------HHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhH-HHHHHHHHHh-
Confidence 12222 222111 3345533222234466777888888776555555555444555 6789999999
Q ss_pred HHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy824 385 MSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESL 429 (518)
Q Consensus 385 ~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~ 429 (518)
+....+-+++.+..++...+.+++...++.....++-.+..+..
T Consensus 535 -~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~di 578 (850)
T KOG3524|consen 535 -KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDI 578 (850)
T ss_pred -hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhh
Confidence 66677767777888899999999999999999999877766653
No 110
>KOG1451|consensus
Probab=95.72 E-value=0.0074 Score=61.25 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=47.3
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEE-ecCCCeeEEEeCCeeEEEEeeeee
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGTRGEAFEHLSQIIIN 59 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~-~~~~~Ww~g~~~~~~g~~p~~~v~ 59 (518)
..+.++|.-.|....+|+|..|.++.-+. ...+||..|+++|..|++|++||+
T Consensus 757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve 810 (812)
T KOG1451|consen 757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVE 810 (812)
T ss_pred ccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccC
Confidence 34778999999999999999999998665 556899999999999999999987
No 111
>KOG3725|consensus
Probab=95.71 E-value=0.0022 Score=58.12 Aligned_cols=51 Identities=27% Similarity=0.443 Sum_probs=43.5
Q ss_pred ceEEEEecCCCCCCCCCcccCCCCEEEEEEe--cCCCeeEEEeCCeeEEEEee
Q psy824 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEAFEHLSQI 56 (518)
Q Consensus 6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~--~~~~Ww~g~~~~~~g~~p~~ 56 (518)
...|+++|||.|....||++-..|+|.|..- .|.+|..|+.+++.|-.|-.
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvt 369 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVT 369 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchh
Confidence 4679999999999999999999999999654 46899999999887766643
No 112
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=95.54 E-value=0.06 Score=42.77 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=48.1
Q ss_pred eEeeeeEEEEec-CcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824 454 LIHQGEVIRVTS-GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514 (518)
Q Consensus 454 ll~~g~l~~~~~-~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~ 514 (518)
.+++|.|.+.+. .+..+.+|++|+++.|++++.... ......+..|+|.++.|...++.+
T Consensus 1 ~~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~-~~~~~~~~~i~l~~~~v~~~~~~~ 61 (104)
T PF00169_consen 1 CIKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKD-KSDSKPKGSIPLDDCTVRPDPSSD 61 (104)
T ss_dssp EEEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTT-TTESSESEEEEGTTEEEEEETSST
T ss_pred CEEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCcc-ccceeeeEEEEecCceEEEcCccc
Confidence 478999988873 334679999999999999986621 236778889999999999988874
No 113
>KOG3775|consensus
Probab=95.41 E-value=0.0079 Score=57.67 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=47.8
Q ss_pred EEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeeccCC
Q psy824 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHSIS 63 (518)
Q Consensus 9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~~~ 63 (518)
=+|++.|.++.++||-+..||-|.|-...|+-|++|.+ .|..|.||++|+-+..-
T Consensus 265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~ 321 (482)
T KOG3775|consen 265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDG 321 (482)
T ss_pred hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCC
Confidence 46899999999999999999999999888899999875 46779999999876543
No 114
>KOG3557|consensus
Probab=95.33 E-value=0.0052 Score=63.13 Aligned_cols=54 Identities=28% Similarity=0.486 Sum_probs=45.3
Q ss_pred eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeeecc
Q psy824 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIINHS 61 (518)
Q Consensus 7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~~~ 61 (518)
.+++++|||.|++..||++.+||+++|+.. ..+||..+.. |+.|+.|.++....
T Consensus 501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~ 555 (721)
T KOG3557|consen 501 KWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPL 555 (721)
T ss_pred eeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccC
Confidence 489999999999999999999999999965 5699997754 56688887776643
No 115
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=94.76 E-value=0.12 Score=40.50 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=45.9
Q ss_pred EeeeeEEEEec--CcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824 455 IHQGEVIRVTS--GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514 (518)
Q Consensus 455 l~~g~l~~~~~--~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~ 514 (518)
+++|.|.+... ....+.++++|+++.|.+++.... .........|+|.++.|...++..
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-~~~~~~~~~i~l~~~~v~~~~~~~ 62 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKA-KKDYKPKGSIDLSGITVREAPDPD 62 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCc-cccCCCceEEECCcCEEEeCCCCc
Confidence 67888888765 344679999999999999987632 122677889999999998887764
No 116
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=94.20 E-value=0.048 Score=41.20 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEc
Q psy824 152 EAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLR 194 (518)
Q Consensus 152 ~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~ 194 (518)
...+|.+++|+.+.|++..+.+-|.++ ..|+.|+||.+++-..
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence 346899999999999999999999999 7999999999998543
No 117
>KOG0199|consensus
Probab=93.90 E-value=0.049 Score=57.32 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=39.8
Q ss_pred EEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEe--CCeeEEEEeeeee
Q psy824 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTR--GEAFEHLSQIIIN 59 (518)
Q Consensus 9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~--~~~~g~~p~~~v~ 59 (518)
++|..+|.+.+++.|-|++||.|.|++... +.||+|.. ++++|.||...|.
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 344455556778999999999999999866 57999954 4677999976666
No 118
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=93.48 E-value=0.14 Score=35.78 Aligned_cols=35 Identities=20% Similarity=0.550 Sum_probs=29.4
Q ss_pred CCCCCEEEEEecCCCC-eEEEE-ECCeeEEEcCCCEE
Q psy824 158 FRAGDVIEVLDTLDRD-WWWGT-RGEASGWFPSAFVR 192 (518)
Q Consensus 158 ~~~g~~i~v~~~~~~~-w~~~~-~~g~~G~~P~~~v~ 192 (518)
+..|+.|.++.....+ |+..+ .+|..||++..|++
T Consensus 19 l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 19 LPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 5789999999887655 99994 89999999999984
No 119
>KOG3522|consensus
Probab=91.18 E-value=0.37 Score=51.70 Aligned_cols=94 Identities=10% Similarity=-0.016 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy824 224 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN-DMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP 302 (518)
Q Consensus 224 ~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~-~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~ 302 (518)
+..+|+.+-.+++-+++.+.+|++.=..++ +-.++..-- .+...-++...|-.-......+-.+-..+-.....+.
T Consensus 8 l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~--~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~~qq~vga~~v~~f- 84 (925)
T KOG3522|consen 8 LIDREQSYVESLHTGVDRYVQPLKERKVLI--DPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWDEQQKVGASFVYSF- 84 (925)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccc--CCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh-
Confidence 445678888888888888888877621111 111111000 0111224455554333333333333333333331111
Q ss_pred CCCchHHHHHhhhcCcCC
Q psy824 303 YKSCIGETFLKHKSGFHP 320 (518)
Q Consensus 303 ~~~~ig~~f~~~~~~~~~ 320 (518)
....|+++|.++..+|+.
T Consensus 85 Sk~~v~~~Y~~y~nn~~~ 102 (925)
T KOG3522|consen 85 SKTAVLAAYSKYVNNFKR 102 (925)
T ss_pred hHHHHHHHHHHHHhchhH
Confidence 246799999999998876
No 120
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=91.18 E-value=0.37 Score=34.54 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=28.9
Q ss_pred CCCCCCEEEEEecCCCCeEEEEE-CCeeEEEcCCCE
Q psy824 157 GFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFV 191 (518)
Q Consensus 157 ~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v 191 (518)
.+..|+.+.++...+++|...+. +|..||+|..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 36789999999876559999995 499999987765
No 121
>KOG0199|consensus
Probab=90.99 E-value=0.22 Score=52.67 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=41.4
Q ss_pred EEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEE--ECCeeEEEcCCCEEE
Q psy824 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT--RGEASGWFPSAFVRL 193 (518)
Q Consensus 143 ~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~~ 193 (518)
+|..+|++...+.|.+.+||.|+|++... .-||.|. .+++.|.||.+-|..
T Consensus 378 ~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 378 VARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred eeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 34445556678899999999999998765 5689996 789999999998874
No 122
>KOG3565|consensus
Probab=90.55 E-value=0.062 Score=57.32 Aligned_cols=56 Identities=9% Similarity=0.239 Sum_probs=47.6
Q ss_pred CceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEE--eCCeeEEEEeeeeec
Q psy824 5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT--RGEAFEHLSQIIINH 60 (518)
Q Consensus 5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~--~~~~~g~~p~~~v~~ 60 (518)
....++|+|.|.+++++++++.+|+++.|++... +||=+++ .++..|.+|..|++.
T Consensus 577 ~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~ 635 (640)
T KOG3565|consen 577 PIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDV 635 (640)
T ss_pred CccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccc
Confidence 4568999999999999999999999999998766 6888888 666678888777664
No 123
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.28 E-value=0.66 Score=35.60 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=40.8
Q ss_pred eeeEEEEecC--cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824 457 QGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514 (518)
Q Consensus 457 ~g~l~~~~~~--~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~ 514 (518)
+|.|.+...+ ...+.++++|+++.|.+++...... .......|+|.++.|...++.+
T Consensus 2 ~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~ 60 (96)
T cd00821 2 EGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESPDDS 60 (96)
T ss_pred cchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECCCcC
Confidence 4555544433 3356899999999999998652111 3677889999999998887764
No 124
>KOG1729|consensus
Probab=89.15 E-value=0.052 Score=51.82 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHhcccCCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824 434 AWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD 512 (518)
Q Consensus 434 ~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d 512 (518)
..+..+.+. +.++..++|.|+.+|.+++...++ .+.+++|||+|+++++..-..+ ..|.-...+++.++.+....+
T Consensus 27 ~~e~~~~~r-~~~~~~~grv~~~q~~~~k~~rk~-~q~r~~~l~~D~~~~~~~~~~~-~~~~~~~~~~le~~~~~~~~~ 102 (288)
T KOG1729|consen 27 KVEFCFGRR-GHPCRECGRVLCRQGTLVKRCRKK-LQSRSFFLFNDILVYGNIVSDN-KLLNKNHIIPLEGVSQESRSD 102 (288)
T ss_pred cccchhhhc-cCcccccchhhhhhhhhHHHHhcc-cccccccccccchhhcccccCH-HHHhHHhcccccchhhhhhcc
Confidence 333444332 467888999999999996655433 7899999999999999754322 145555677776666655544
No 125
>KOG3705|consensus
Probab=88.83 E-value=0.33 Score=47.48 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=40.0
Q ss_pred EEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeecc
Q psy824 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINHS 61 (518)
Q Consensus 9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~ 61 (518)
.+|+++..+++.+||.++.||+|-|-...=+|.-.|.+. ++.|.||++-|++-
T Consensus 512 ~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek 566 (580)
T KOG3705|consen 512 VIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREK 566 (580)
T ss_pred eEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeeee
Confidence 678999999999999999999998865422233334333 35599999998864
No 126
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.76 E-value=0.5 Score=43.10 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEecCC-CCeEEEE-ECCeeEEEcCCCEEEc
Q psy824 157 GFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLR 194 (518)
Q Consensus 157 ~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~ 194 (518)
++..|+.|+|++..+ .||...+ .+|+.||++..|+...
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 478999999998765 6899998 6899999999998644
No 127
>KOG3812|consensus
Probab=87.65 E-value=0.29 Score=46.72 Aligned_cols=48 Identities=19% Similarity=0.429 Sum_probs=37.1
Q ss_pred EEEEecCCCCCCCCC-------cccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEe
Q psy824 8 LAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQ 55 (518)
Q Consensus 8 ~~~al~d~~~~~~~e-------L~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~ 55 (518)
.+++.-+|.+.-+++ ++|...|+|.|-++-+.+||.|++ +..+|++|+
T Consensus 60 AV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 60 AVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 355667787765554 899999999999999999999985 334577773
No 128
>KOG3812|consensus
Probab=87.49 E-value=0.27 Score=46.96 Aligned_cols=48 Identities=23% Similarity=0.525 Sum_probs=37.2
Q ss_pred EEEeecCCCCCC-------CCCCCCCCCEEEEEecCCCCeEEEE---ECCeeEEEcCC
Q psy824 142 AEAVWDHVAMEA-------EELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSA 189 (518)
Q Consensus 142 ~~a~~~~~~~~~-------~eL~~~~g~~i~v~~~~~~~w~~~~---~~g~~G~~P~~ 189 (518)
+++.-+|.+.-+ ..++|+..|.+.|-++.+++||.|+ .++..|++|..
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp 118 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP 118 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence 344556655433 3589999999999999999999999 36688999974
No 129
>KOG0040|consensus
Probab=86.77 E-value=0.019 Score=64.35 Aligned_cols=58 Identities=24% Similarity=0.559 Sum_probs=53.3
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197 (518)
Q Consensus 140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~ 197 (518)
.++.|+|+|....+-+.+.++||+.+.+....-+||.++++.+.|++|+.||+.+...
T Consensus 969 ~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 969 ECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 4567899999999999999999999999888899999999999999999999988765
No 130
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=86.43 E-value=1.6 Score=31.14 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=29.4
Q ss_pred ccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeee
Q psy824 24 GFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIIN 59 (518)
Q Consensus 24 ~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~ 59 (518)
.+..|+.+.++...+++|+..+.. |..||.+.++++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence 367899999998865599998876 778999877764
No 131
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=85.30 E-value=4.2 Score=31.15 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=32.4
Q ss_pred ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824 468 WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 513 (518)
Q Consensus 468 ~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~ 513 (518)
..+.++++|+++.|.+.+.+....... ..+++..+.|...+++
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~~ 60 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPDG 60 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCCC
Confidence 357899999999999998774322211 6789999998887764
No 132
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=83.80 E-value=2.2 Score=29.59 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=28.7
Q ss_pred CCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCE
Q psy824 156 LGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191 (518)
Q Consensus 156 L~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v 191 (518)
..+.+|..+.|++. ..+|...+.+|..||++.+.+
T Consensus 19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 34678899988865 568999999999999988754
No 133
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=82.19 E-value=1.6 Score=32.23 Aligned_cols=24 Identities=42% Similarity=0.945 Sum_probs=19.5
Q ss_pred cccCCCCEEEEEEec------CCCeeEEEe
Q psy824 23 LGFRAGDVIEVLDTL------DRDWWWGTR 46 (518)
Q Consensus 23 L~~~~gd~i~v~~~~------~~~Ww~g~~ 46 (518)
|+++.||.|.|-... +.+||.|..
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 789999999996654 579999873
No 134
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=81.74 E-value=1.8 Score=30.83 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=20.7
Q ss_pred ccCCCCEEEEEEecCCCeeEEEeC
Q psy824 24 GFRAGDVIEVLDTLDRDWWWGTRG 47 (518)
Q Consensus 24 ~~~~gd~i~v~~~~~~~Ww~g~~~ 47 (518)
.|++||.|.+....+++||.|..-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEE
Confidence 588999999998778999999753
No 135
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.71 E-value=5.8 Score=31.08 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=39.6
Q ss_pred EeeeeEEEEecCc---ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824 455 IHQGEVIRVTSGM---WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514 (518)
Q Consensus 455 l~~g~l~~~~~~~---~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~ 514 (518)
|+.|.|.....+. ..++++++|=+++|-.-|-...+.. |..|||+++.|+++++|=
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~----kyilpLdnLk~Rdve~gf 60 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK----KYMLPLDGLKLRDIEGGF 60 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecceeeeecccccccc----cceeeccccEEEeecccc
Confidence 5566665543321 2578999999999998875543343 446899999999999863
No 136
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=81.67 E-value=3.6 Score=28.39 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=27.3
Q ss_pred ccCCCCEEEEEEecCCC-eeEE-EeCCeeEEEEeeee
Q psy824 24 GFRAGDVIEVLDTLDRD-WWWG-TRGEAFEHLSQIII 58 (518)
Q Consensus 24 ~~~~gd~i~v~~~~~~~-Ww~g-~~~~~~g~~p~~~v 58 (518)
.+..|+.|.|++....+ |++. ..+|..||..+.++
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l 54 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYL 54 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEcccc
Confidence 35789999999987755 9998 67788899886554
No 137
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=80.82 E-value=3.2 Score=31.61 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=25.4
Q ss_pred CCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEe
Q psy824 19 EAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQ 55 (518)
Q Consensus 19 ~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~ 55 (518)
..-+|++++|+.+.|+...+++=|.++.. |+.|+.+.
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~ 66 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLR 66 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEG
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEH
Confidence 35799999999999999999888888875 67798883
No 138
>KOG3705|consensus
Probab=79.19 E-value=1.9 Score=42.31 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=42.6
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEE
Q psy824 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193 (518)
Q Consensus 140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~ 193 (518)
...+++++..++..+|+.++.||.|-|-...=+|.-.|. ..++.|+||+--|+.
T Consensus 510 Hn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 510 HNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred cceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 446889999999999999999999988765444545554 467899999876664
No 139
>KOG4384|consensus
Probab=78.77 E-value=17 Score=35.45 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=49.8
Q ss_pred EEEeecCC--CCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHH
Q psy824 142 AEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203 (518)
Q Consensus 142 ~~a~~~~~--~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~ 203 (518)
+.+.-+|. +...++|-++.|++|.++.+..-|-|.|-++++.|-|+.-||..+........+
T Consensus 139 ~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e~~~~~~ 202 (361)
T KOG4384|consen 139 ARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEEEPAPKR 202 (361)
T ss_pred ccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccccccccccch
Confidence 34444454 556789999999999999998889999999999999999999988766544433
No 140
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.75 E-value=15 Score=28.13 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=36.4
Q ss_pred eeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEE
Q psy824 456 HQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIIN 509 (518)
Q Consensus 456 ~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~ 509 (518)
++|.|.+.+... .-+.++++|.++.|.+.+..... .....+.|+|..+.|..
T Consensus 1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~--~~~~~~~i~l~~~~~~~ 53 (91)
T cd01246 1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSM--RGKPRGTILLSGAVISE 53 (91)
T ss_pred CeEEEEEecccCCCceeeEEEEECCEEEEEecCccC--CCCceEEEEeceEEEEE
Confidence 367777765432 24688999999999998765321 13567889999887654
No 141
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=72.10 E-value=19 Score=28.55 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=40.5
Q ss_pred eEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824 454 LIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 513 (518)
Q Consensus 454 ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~ 513 (518)
.+++|.|.+.+... .-+.|++.|-+..|.+-+... ...-.+.|+|+++.|...++.
T Consensus 2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~----~~~~~~~I~L~~~~v~~~~~~ 58 (100)
T cd01233 2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDK----DPVERGVINLSTARVEHSEDQ 58 (100)
T ss_pred cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCC----CccEeeEEEecccEEEEccch
Confidence 36788888876543 246889999999999887652 134567899999888766553
No 142
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=70.94 E-value=5.5 Score=41.01 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEecCCCCeEEEEE-CCeeEEEcCCCEEE
Q psy824 157 GFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRL 193 (518)
Q Consensus 157 ~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~ 193 (518)
++..|+.|.|+...+.||+..+. +|+.||+-..|+..
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 47899999998755679999997 59999999999874
No 143
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=69.86 E-value=8.6 Score=32.25 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=40.9
Q ss_pred cceEeeeeEEEEec----Cccc--ceEEEEEeCCeEEEEeeccCCC----------------CceEEEEEeecCCeeEEE
Q psy824 452 SQLIHQGEVIRVTS----GMWT--NTITLFLFDHQLVYCKRDILKR----------------NTHVYKARLNIDTSQIIN 509 (518)
Q Consensus 452 r~ll~~g~l~~~~~----~~~~--~~~~~fLF~d~ll~~k~~~~~~----------------~~~~~k~~i~l~~~~v~~ 509 (518)
+.|++.+.+..+.. ++++ -+..+|+|...+|+..+...+. .-+.|+..||+..++|+.
T Consensus 25 gdLL~h~~v~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~ 104 (160)
T cd01255 25 GDLLYHGGVEWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRA 104 (160)
T ss_pred HHhhhhcceeeecCChhhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeec
Confidence 56777777666533 2222 3678999998877765432111 236799999999999987
Q ss_pred cCC
Q psy824 510 LPD 512 (518)
Q Consensus 510 ~~d 512 (518)
...
T Consensus 105 ~n~ 107 (160)
T cd01255 105 SSA 107 (160)
T ss_pred CCC
Confidence 654
No 144
>KOG0040|consensus
Probab=69.43 E-value=0.17 Score=57.25 Aligned_cols=54 Identities=19% Similarity=0.441 Sum_probs=48.3
Q ss_pred EEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI 62 (518)
Q Consensus 9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~ 62 (518)
+.|+|||...++-|.+.++||+++.+.....+||..+++...|..|..||+...
T Consensus 971 v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~ 1024 (2399)
T KOG0040|consen 971 VLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLD 1024 (2399)
T ss_pred HHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhc
Confidence 458999999999999999999999988888999999999999999988877543
No 145
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=69.43 E-value=18 Score=28.20 Aligned_cols=53 Identities=8% Similarity=-0.068 Sum_probs=37.2
Q ss_pred eeeeEEEEecCc-----ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824 456 HQGEVIRVTSGM-----WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD 512 (518)
Q Consensus 456 ~~g~l~~~~~~~-----~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d 512 (518)
++|.|.+.+... .-+.|++.|-++.|.+-+.... ...++.|+|+.+.|....+
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~----~~~~~~I~L~~~~v~~~~~ 59 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQD----EKAEGLIFLSGFTIESAKE 59 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCC----CccceEEEccCCEEEEchh
Confidence 478887765422 2467899999999999876532 2346789999988876543
No 146
>KOG0930|consensus
Probab=68.22 E-value=9.1 Score=35.92 Aligned_cols=106 Identities=16% Similarity=0.115 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccc-----cce---EeeeeEEEEecCc--
Q psy824 398 DHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETS-----SQL---IHQGEVIRVTSGM-- 467 (518)
Q Consensus 398 ~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~-----r~l---l~~g~l~~~~~~~-- 467 (518)
+-.|...+++-+ ++-..+|+.-...+ ..|..+..+|.+- .+.+.... -.| =++|+|.+++++.
T Consensus 203 NVrDkP~lErfi----~MNrgineggdlpe--e~LrnlyeSi~~e-pFkIPeddgndlthtffnpdREGWLlKlgg~rvk 275 (395)
T KOG0930|consen 203 NVKDKPTLERFI----AMNRGINEGGDLPE--ELLRNLYESIKNE-PFKIPEDDGNDLTHTFFNPDREGWLLKLGGNRVK 275 (395)
T ss_pred CCCCCccHHHHH----HHhhccccCCCCcH--HHHHHHHHHhcCC-CCCCCcccCCcchhhccCccccceeeeecCCccc
Confidence 344665555444 33444555322222 3455666777542 12222111 112 2579999987643
Q ss_pred ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824 468 WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514 (518)
Q Consensus 468 ~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~ 514 (518)
.-+.|+++|=+++|-+..-...+ .-++.|||.++.|++++|..
T Consensus 276 tWKrRWFiLtdNCLYYFe~tTDK----EPrGIIpLeNlsir~VedP~ 318 (395)
T KOG0930|consen 276 TWKRRWFILTDNCLYYFEYTTDK----EPRGIIPLENLSIREVEDPK 318 (395)
T ss_pred chhheeEEeecceeeeeeeccCC----CCCcceeccccceeeccCCC
Confidence 24678999999999888644322 24678999999999998764
No 147
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=67.48 E-value=7.2 Score=27.63 Aligned_cols=23 Identities=30% Similarity=0.784 Sum_probs=20.2
Q ss_pred CCCCCCEEEEEecCCCCeEEEEE
Q psy824 157 GFRAGDVIEVLDTLDRDWWWGTR 179 (518)
Q Consensus 157 ~~~~g~~i~v~~~~~~~w~~~~~ 179 (518)
.|++|+.|.+....+++||.|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 47899999999877899999983
No 148
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.32 E-value=32 Score=28.44 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=37.7
Q ss_pred eeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824 456 HQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD 512 (518)
Q Consensus 456 ~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d 512 (518)
++|.|.+.+.. +.-+.|++.|-++.|.+-+... .-..++.|+|.++.|...++
T Consensus 2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~----~~~~~g~I~L~~~~v~~~~~ 55 (125)
T cd01252 2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTT----DKEPRGIIPLENVSIREVED 55 (125)
T ss_pred cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCC----CCCceEEEECCCcEEEEccc
Confidence 46777776543 2246889999888887776432 23468889999999887755
No 149
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=64.21 E-value=8.9 Score=34.84 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEecCCC-CeEEEE-ECCeeEEEcCCCEEEcc
Q psy824 157 GFRAGDVIEVLDTLDR-DWWWGT-RGEASGWFPSAFVRLRV 195 (518)
Q Consensus 157 ~~~~g~~i~v~~~~~~-~w~~~~-~~g~~G~~P~~~v~~~~ 195 (518)
+++.|+.++|+..... ||...+ ..|+.||||..++..-.
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~ 89 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEP 89 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcccc
Confidence 5789999999998764 899999 68999999998876543
No 150
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=63.14 E-value=9.2 Score=28.35 Aligned_cols=23 Identities=43% Similarity=1.015 Sum_probs=18.3
Q ss_pred CCCCCCCEEEEEecC------CCCeEEEE
Q psy824 156 LGFRAGDVIEVLDTL------DRDWWWGT 178 (518)
Q Consensus 156 L~~~~g~~i~v~~~~------~~~w~~~~ 178 (518)
|+++.||.|.|-... +.+||.|.
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEE
Confidence 788999999776543 46899997
No 151
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.76 E-value=10 Score=34.71 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=28.3
Q ss_pred ccCCCCEEEEEEecC-CCeeEEEe-CCeeEEEEeeeee
Q psy824 24 GFRAGDVIEVLDTLD-RDWWWGTR-GEAFEHLSQIIIN 59 (518)
Q Consensus 24 ~~~~gd~i~v~~~~~-~~Ww~g~~-~~~~g~~p~~~v~ 59 (518)
++.+|+.|+|++..+ .||...+. +|..||.++.++.
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls 86 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLS 86 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhc
Confidence 467999999998876 68988874 5678999965554
No 152
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=62.62 E-value=13 Score=33.90 Aligned_cols=38 Identities=13% Similarity=0.393 Sum_probs=32.3
Q ss_pred CCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824 158 FRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195 (518)
Q Consensus 158 ~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 195 (518)
++.|..+.+.....++|....++|+.|++-..|+..-.
T Consensus 116 ~~~~t~~~~~sk~~~~w~~~~~~~k~~~vs~q~~~~~~ 153 (205)
T COG3103 116 WKQGTAVMQISKTQNNWYIITLKGKNGYVSGQLVTAQS 153 (205)
T ss_pred hhcCcEEEEEeeccccchhhhhhcccchhhhhheeccc
Confidence 67788888888887899999999999999988886544
No 153
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=62.58 E-value=33 Score=26.75 Aligned_cols=50 Identities=14% Similarity=0.377 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q psy824 244 DFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETK 296 (518)
Q Consensus 244 ~Yv~~L~~l~~~f~~~l~~----~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~ 296 (518)
.||..|+.-++.|...+++ ..++.+...+.+||-++..+ |..+|.-+.+.
T Consensus 2 ef~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~m---H~~LL~~i~~~ 55 (96)
T PF12210_consen 2 EFCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAM---HPQLLKYIQEQ 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5788999999999988875 34567788999999876655 55555555443
No 154
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=59.46 E-value=39 Score=26.24 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=35.2
Q ss_pred eeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcC
Q psy824 457 QGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLP 511 (518)
Q Consensus 457 ~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~ 511 (518)
+|.|.+.++-. .-+.|++.|=+..|.+.+.+... ...-++.|+|..+.|...+
T Consensus 2 ~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~--~~~~~G~I~L~~~~i~~~~ 55 (91)
T cd01247 2 NGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEK--SHGCRGSIFLKKAIIAAHE 55 (91)
T ss_pred ceEEEEeccccCCCceEEEEEECCEEEEEecCccC--cCCCcEEEECcccEEEcCC
Confidence 46666655432 24688999988888888765322 1245789999998877543
No 155
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=59.27 E-value=72 Score=25.59 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=38.3
Q ss_pred ccccccceEeeeeEEEEecCcccceEEEEEeCC-eEEEEeeccCCCCceEEEEEeecCCe-eEEEcC
Q psy824 447 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDH-QLVYCKRDILKRNTHVYKARLNIDTS-QIINLP 511 (518)
Q Consensus 447 l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d-~ll~~k~~~~~~~~~~~k~~i~l~~~-~v~~~~ 511 (518)
++.++..+|++|.|.+.. +.-.+.|.++|=+. -|++..+. +..+|+-||+... .|.-..
T Consensus 6 fl~~ge~Il~~g~v~K~k-gl~~kkR~liLTd~PrL~Yvdp~-----~~~~KGeI~~~~~l~v~~k~ 66 (104)
T PF14593_consen 6 FLNPGELILKQGYVKKRK-GLFAKKRQLILTDGPRLFYVDPK-----KMVLKGEIPWSKELSVEVKS 66 (104)
T ss_dssp GTT-T--EEEEEEEEEEE-TTEEEEEEEEEETTTEEEEEETT-----TTEEEEEE--STT-EEEECS
T ss_pred hhcCCCeEEEEEEEEEee-ceEEEEEEEEEccCCEEEEEECC-----CCeECcEEecCCceEEEEcc
Confidence 566688999999988774 44456777777777 78888765 4578899999844 454433
No 156
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=58.76 E-value=56 Score=24.91 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHhcCHHHHHHHHHHHHHHH
Q psy824 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS-PEQIQTIFGNLEDILAFQSSFLEDL 293 (518)
Q Consensus 231 R~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~-~~~~~~lF~ni~~i~~~h~~~l~~L 293 (518)
-...++|-..-|..|.+.|..+...+..........-+ ..-...+-...+.+-..|..+...|
T Consensus 28 l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~a~~h~~~a~~L 91 (91)
T PF00611_consen 28 LASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEETEQIAEQHSKLAENL 91 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567788899999999999999999887753221111 2344455555666667777666543
No 157
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=55.25 E-value=34 Score=23.49 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=26.7
Q ss_pred cccCCCCEEEEEEecCCCeeEEEeCCeeEEEEee
Q psy824 23 LGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQI 56 (518)
Q Consensus 23 L~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~ 56 (518)
..+.+|..+.|++. .++|.+.+.+|..||....
T Consensus 19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~ 51 (55)
T PF06347_consen 19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKS 51 (55)
T ss_pred EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEee
Confidence 45678999999855 6699999988888998854
No 158
>KOG4384|consensus
Probab=51.99 E-value=7.6 Score=37.79 Aligned_cols=53 Identities=17% Similarity=0.361 Sum_probs=43.9
Q ss_pred EEEecCCCC--CCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824 9 AEAVWDHVA--MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS 61 (518)
Q Consensus 9 ~~al~d~~~--~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~ 61 (518)
|++.-+|.+ ...++|-+.+||+|.++++..-|-|.|-++++.|.|+-.+|+..
T Consensus 139 ~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~ 193 (361)
T KOG4384|consen 139 ARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVI 193 (361)
T ss_pred ccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccc
Confidence 445556655 46789999999999999998889999999999999987777754
No 159
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=49.94 E-value=51 Score=26.41 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=34.6
Q ss_pred EeeeeEEEEecCc------ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEE
Q psy824 455 IHQGEVIRVTSGM------WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIIN 509 (518)
Q Consensus 455 l~~g~l~~~~~~~------~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~ 509 (518)
|++|-|.+-+.++ +-+.|++.|=+..|.+.+.+.. ..-.-++.|+|.++.+.+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~--~~~~~kG~I~L~~~~~ve 59 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFE--KRGSKKGSIDLSKIKCVE 59 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcc--cccCcceeEECCcceEEE
Confidence 4567776665433 2357888887778888875421 123467899999987655
No 160
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=46.84 E-value=79 Score=24.67 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=31.3
Q ss_pred eeeeEEEEecCc-ccceEEEEEeCC--eEEEEeeccCCCCceEEEEEeecCCeeEEE
Q psy824 456 HQGEVIRVTSGM-WTNTITLFLFDH--QLVYCKRDILKRNTHVYKARLNIDTSQIIN 509 (518)
Q Consensus 456 ~~g~l~~~~~~~-~~~~~~~fLF~d--~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~ 509 (518)
++|.|.+.+... .-+.|++.|-.+ .|.+-+.. .....++.|+|..+....
T Consensus 1 ~~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~----~~~~~~g~I~L~~~~~v~ 53 (101)
T cd01235 1 CEGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDF----EDTAEKGCIDLAEVKSVN 53 (101)
T ss_pred CeEEEEEcCCCCCCccceEEEEECCCCEEEEecCC----CCCccceEEEcceeEEEe
Confidence 467777765432 235778888744 66666543 224456889999876544
No 161
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=43.76 E-value=36 Score=35.24 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=29.9
Q ss_pred ccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeeec
Q psy824 24 GFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIINH 60 (518)
Q Consensus 24 ~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~~ 60 (518)
++.+|+.|.|+...+.|||.-+.+ |+.||.-..|+..
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 577999999986556799999985 7889998666653
No 162
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=42.34 E-value=24 Score=25.71 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=12.3
Q ss_pred cCCCCEEEEEEecC---CCeeEEEe
Q psy824 25 FRAGDVIEVLDTLD---RDWWWGTR 46 (518)
Q Consensus 25 ~~~gd~i~v~~~~~---~~Ww~g~~ 46 (518)
|++|+.|+|....+ ..||.|..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V 25 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATV 25 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEE
Confidence 78999999987654 24665553
No 163
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=42.18 E-value=1.1e+02 Score=23.27 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=36.4
Q ss_pred eeeeEEEEecC--cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824 456 HQGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 513 (518)
Q Consensus 456 ~~g~l~~~~~~--~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~ 513 (518)
++|.|.+.+.+ +.-+.|++.|-++.|.+.+... .........|+|..+.|...++.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~--~~~~~~~~~i~l~~~~v~~~~~~ 58 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLK--DYDNAHVKEIDLRRCTVRHNGKQ 58 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCc--ccccccceEEeccceEEecCccc
Confidence 35777665533 2346788888888888876442 11233456799988888777665
No 164
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.78 E-value=98 Score=24.51 Aligned_cols=49 Identities=6% Similarity=-0.026 Sum_probs=29.3
Q ss_pred EeeeeEEEEecCc-ccceEEEEEeCC-eEEEEeeccCCCCceEEEEEeecCCeeE
Q psy824 455 IHQGEVIRVTSGM-WTNTITLFLFDH-QLVYCKRDILKRNTHVYKARLNIDTSQI 507 (518)
Q Consensus 455 l~~g~l~~~~~~~-~~~~~~~fLF~d-~ll~~k~~~~~~~~~~~k~~i~l~~~~v 507 (518)
+++|.|.+.+... .-+.||+.|-+| .|++-+.+.. .. ....++|+.+.|
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~--~~--~~~~i~l~~~~v 52 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPE--DG--DPFLPPLNNFSV 52 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCC--cc--CccccccCCeEE
Confidence 5788888876543 246888888844 5666654421 11 124566666664
No 165
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=30.26 E-value=82 Score=21.52 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=20.0
Q ss_pred ccCCCCEEEEEEecCCCeeEEEeCCe
Q psy824 24 GFRAGDVIEVLDTLDRDWWWGTRGEA 49 (518)
Q Consensus 24 ~~~~gd~i~v~~~~~~~Ww~g~~~~~ 49 (518)
.++.|+.+.+.- .++.|++|+.-+.
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~ 26 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKV 26 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEE
Confidence 578899998887 7889999986443
No 166
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=29.52 E-value=2.4e+02 Score=22.40 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=31.4
Q ss_pred eEeeeeEEEEecCcccceEEEEEeCC------eEEEEeeccCCCC-ceEEEEEeecCCeeE-EEcCCC
Q psy824 454 LIHQGEVIRVTSGMWTNTITLFLFDH------QLVYCKRDILKRN-THVYKARLNIDTSQI-INLPDG 513 (518)
Q Consensus 454 ll~~g~l~~~~~~~~~~~~~~fLF~d------~ll~~k~~~~~~~-~~~~k~~i~l~~~~v-~~~~d~ 513 (518)
.+++|.|.+... .+.|+++|=.+ .|-+.+....-.. .-.-++.|+|++|.. ...+|.
T Consensus 2 v~k~GyL~K~K~---~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~ 66 (101)
T cd01257 2 VRKSGYLRKQKS---MHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADA 66 (101)
T ss_pred ccEEEEEeEecC---cEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecccc
Confidence 467788877622 23467666666 4555554311000 133567888888874 344443
No 167
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=28.47 E-value=3e+02 Score=25.82 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q psy824 233 RVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETK 296 (518)
Q Consensus 233 ~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~ 296 (518)
..++|=-.-|..|.+.|..+...+...+.. .......-...|....+.+-.+|..+...|..-
T Consensus 26 ~f~kERa~IE~~YAK~L~kLa~k~~k~~~~-~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~e 88 (239)
T cd07658 26 TVLQERAELELNYAKGLSKLSGKLSKASKS-VSGTLSSAWTCVAEEMESEADIHRNLGSALTEE 88 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666789999999999999988666642 222224567778888999999999998888754
No 168
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=23.39 E-value=1.7e+02 Score=20.36 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=21.8
Q ss_pred CCCCCCCEEEEEecC-CCCeEEEEECCeeEEEcC
Q psy824 156 LGFRAGDVIEVLDTL-DRDWWWGTRGEASGWFPS 188 (518)
Q Consensus 156 L~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~ 188 (518)
-.+..|+-|.|+... |..|..++...-.||+++
T Consensus 21 s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 21 SALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred cccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 346788889888764 467888888889999874
No 169
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=23.32 E-value=85 Score=33.32 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=33.4
Q ss_pred CCCCEEEEEecC-----CCCeEEEE-ECCeeEEEcCCCEEEcccCCCch
Q psy824 159 RAGDVIEVLDTL-----DRDWWWGT-RGEASGWFPSAFVRLRVSQEDTV 201 (518)
Q Consensus 159 ~~g~~i~v~~~~-----~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~~~ 201 (518)
.-|+.+.|.+.. +-+|.... .+|..||+...||+++..+..-.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (549)
T PRK13545 373 NFGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKSNNNII 421 (549)
T ss_pred ecCceEEEcccccccccCcceEEEEecCCccceeeeeeeeecccCCccc
Confidence 348888887653 34898888 79999999999999998765433
No 170
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=22.88 E-value=3.8e+02 Score=24.16 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=41.0
Q ss_pred ceEeeeeEEEEecCcccceEEEEEeCCeEEEEeecc-CCCCceEEEEEeecCCee
Q psy824 453 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDI-LKRNTHVYKARLNIDTSQ 506 (518)
Q Consensus 453 ~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~-~~~~~~~~k~~i~l~~~~ 506 (518)
+.+....+.++..+....+|.++|=+..|.+..+.. .....+..+.+|||.++.
T Consensus 49 ~vlFs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~ 103 (199)
T PF06017_consen 49 KVLFSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDIT 103 (199)
T ss_pred ceEEEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCccccc
Confidence 678888888887765567888888888777775322 234678999999999887
No 171
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=21.91 E-value=2.2e+02 Score=22.72 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=24.2
Q ss_pred ceEEEEEeCCeE-------EEEeeccCCCCceEEEEEeecCCeeEEEc
Q psy824 470 NTITLFLFDHQL-------VYCKRDILKRNTHVYKARLNIDTSQIINL 510 (518)
Q Consensus 470 ~~~~~fLF~d~l-------l~~k~~~~~~~~~~~k~~i~l~~~~v~~~ 510 (518)
+.|++.|-++-+ .+-+.. .....++.|+|+.+.+.+.
T Consensus 20 krRwFvL~~~~l~~~~~~L~Yyk~~----~~~k~~g~I~L~~~~~v~~ 63 (108)
T cd01266 20 VRRYFVLHCGDRERNLFALEYYKTS----RKFKLEFVIDLESCSQVDP 63 (108)
T ss_pred EEEEEEEeccccCCCcceEEEECCC----CCCccceEEECCccEEEcc
Confidence 577888877643 444432 2346778999999877654
Done!