RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy824
(518 letters)
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 294 bits (754), Expect = 1e-94
Identities = 153/407 (37%), Positives = 240/407 (58%), Gaps = 34/407 (8%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 182
E + + + VV AEA+WDHV M+ +ELGF+AGDVIEV+D +R+WWWG +
Sbjct: 14 GGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADG 73
Query: 183 SGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTE 242
GWFP++FVRLRV+Q++ +D + G++ + S DQ+R+ V+ E+++TE
Sbjct: 74 EGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAE---AQSSKDQMRTNVINEILSTE 130
Query: 243 RDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP 302
RD++K L D+ EGY+ +CR+R DMFS EQ++TIFGN+EDI Q +F++ LE + + + P
Sbjct: 131 RDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERP 190
Query: 303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK--WLLFCCRSLEDKARWLAAFQQ 360
+ S +G FL+H++ F + +C++ L L + A +
Sbjct: 191 HLSELGACFLEHQADFQIY---------SEYCNNHPNACVELSRLTKLSKYVYFFEACRL 241
Query: 361 ERALVEQDREDGLEFAPA---------AKELARMSAARCHSSRPPTDHPDYVKITEALEA 411
+ +++ + L P EL + ++ H D+ + AL A
Sbjct: 242 LQKMIDISLDGFL-LTPVQKICKYPLQLAELLK------YT---HPQHRDFKDVEAALHA 291
Query: 412 MRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNT 471
M++VA LINERKRR+E+++K+A WQ +E WEGEDL+ SS+LI+ GE+ RVT +
Sbjct: 292 MKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQ 351
Query: 472 -ITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRT 517
FLFDHQL+YCK+D+L+R+ YK RL++D ++++L DGK R
Sbjct: 352 QRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRD 398
Score = 63.8 bits (155), Expect = 4e-11
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
VV AEA+WDHV M+ +ELGF+AGDVIEV+D +R+WWWG
Sbjct: 30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR 69
Score = 58.4 bits (141), Expect = 2e-09
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 303 YKSCI---GETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQ 359
YK + G + + G L V++++A ++H L C R E K RWL AF
Sbjct: 377 YKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFA 436
Query: 360 QERALVEQDREDGLEFAPAAKELARMSAAR 389
+ER V+ D+E G ++ A ++A++
Sbjct: 437 REREQVQLDQETGFSITELQRKQAMLNASK 466
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 240 bits (613), Expect = 2e-74
Identities = 114/339 (33%), Positives = 184/339 (54%), Gaps = 33/339 (9%)
Query: 193 LRVSQEDTVEDCLAALASGG--SKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLH 250
L V+QED VE+ + + +G + L + DQ+R+ V+ E+++TER ++K L
Sbjct: 2 LWVNQEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLK 61
Query: 251 DVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGET 310
D+ EGYL +CR+R DMFS EQ++ IFGN+EDI FQ F+ DLE + + D P+ S IG
Sbjct: 62 DICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPC 121
Query: 311 FLKHKSGFHPHLGVTVRHAIKIHCSDKDK--WLLFCCRSLEDKARWLAAFQQERALVEQD 368
FL+H+ GF + +C++ L + A + + +++
Sbjct: 122 FLEHQDGFWIY---------SEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIA 172
Query: 369 REDGLEFAPA---------AKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLI 419
+ L P EL + ++ DH DY + AL MR+V I
Sbjct: 173 IDGFL-LTPVQKICKYPLQLAELLK------YT---AQDHSDYRYVAAALAVMRNVTQQI 222
Query: 420 NERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNT-ITLFLFD 478
NERKRR+E+++K+A WQ V WEG+D+++ SS+LI+ GE+ + N FLFD
Sbjct: 223 NERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFD 282
Query: 479 HQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRT 517
HQ+V CK+D+++R+ YK R+++D ++I++ DG+
Sbjct: 283 HQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDD 321
Score = 59.9 bits (145), Expect = 8e-10
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 314 HKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGL 373
+ G V++++A K+H + ++ LF + LE+K RWL AF++ER +V++D + G
Sbjct: 314 IEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGF 373
Query: 374 EFAPAAKELARMSAARCHSSRPPTDHPDY 402
E + K A M+ R S + T +
Sbjct: 374 EISENQKRQAAMT-VRKASKQKVTQRKWH 401
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 201 bits (512), Expect = 6e-58
Identities = 84/418 (20%), Positives = 153/418 (36%), Gaps = 72/418 (17%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW-----WGTRGEASGWFPSAFVRLRVS 196
+ ++ EL F A D+ +V D + W + G P V
Sbjct: 82 LSTCCEKFGLKRSEL-FEAFDLFDVQDFGKVIYTLSALSWTPIAQNRGIMPFPTEEESVG 140
Query: 197 QED-----------------TVEDCLAALASGGS---KTLRRRTSISL---LSNDQVRSR 233
ED + DC+ + G + L R +S+ ++ R
Sbjct: 141 DEDIYSGLSDQIDDTVEEDEDLYDCVENEEAEGDEIYEDLMRSEPVSMPPKMTEYDKRCC 200
Query: 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDL 293
+RE+ TE + L + + +L +R P+ I+ IF N+ED+L + FL+++
Sbjct: 201 CLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEM 257
Query: 294 ETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKW---LLFCCRSLED 350
+ L P + + + F+K+K F +CS + L + ED
Sbjct: 258 KEALGT--PGAANLYQVFIKYKERF---------LVYGRYCSQVESASKHLDRVAAARED 306
Query: 351 KARWLAAFQQERALVEQDREDGLEFAPA---------AKELARMSAARCHSSRPPTDHPD 401
L Q D L P +EL + H+ + +
Sbjct: 307 VQMKLEECSQRANNGRFTLRDLL-MVPMQRVLKYHLLLQELVK------HTQ----EAME 355
Query: 402 YVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI 461
+ AL+AMRD+A +NE KR E+L ++ +Q +E + + + GE+
Sbjct: 356 KENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQS--LAHYGRPKIDGELK 413
Query: 462 RVTSGMWTNT-ITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD 518
+ + FL D L+ CKR + +++ K +N+ + Q+ + G
Sbjct: 414 ITSVERRSKMDRYAFLLDKALLICKR---RGDSYDLKDFVNLHSFQVRDDSSGDRDNK 468
Score = 40.0 bits (93), Expect = 0.002
Identities = 5/53 (9%), Positives = 15/53 (28%)
Query: 325 TVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP 377
H + + ++ E K +W+ F+ + + +
Sbjct: 469 KWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDF 521
Score = 30.8 bits (69), Expect = 1.2
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
+ ++ EL F A D+ +V D +
Sbjct: 82 LSTCCEKFGLKRSEL-FEAFDLFDVQDFGKVIYT 114
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 187 bits (477), Expect = 2e-54
Identities = 65/310 (20%), Positives = 125/310 (40%), Gaps = 49/310 (15%)
Query: 225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILA 284
++ R +RE+ TE + L + + ++ +R P+ ++TIF N+E++ +
Sbjct: 20 MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFS 76
Query: 285 FQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIH---CSDKDKWL 341
+ FL++L+ L P + + + F+K+K F ++ CS +
Sbjct: 77 VHTHFLKELKDALAG--PGATTLYQVFIKYKERF------------LVYGRYCSQVESAS 122
Query: 342 LF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPA---------AKELARMSAAR 389
+ ED L Q D L P +EL +
Sbjct: 123 KHLDQVATAREDVQMKLEECSQRANNGRFTLRDLL-MVPMQRVLKYHLLLQELVK----- 176
Query: 390 CHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIE 449
H+ D + + AL+AMRD+A +NE KR E+L ++ +Q +E + +
Sbjct: 177 -HTQ----DATEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQS--LA 229
Query: 450 TSSQLIHQGEVIRVTSGMWTNT-ITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQII 508
+ GE+ + + T FL D L+ CKR + +++ KA +N+ + Q+
Sbjct: 230 NYGRPKIDGELKITSVERRSKTDRYAFLLDKALLICKR---RGDSYDLKASVNLHSFQVR 286
Query: 509 NLPDGKGRTD 518
+ G+
Sbjct: 287 DDSSGERDNK 296
Score = 40.2 bits (94), Expect = 0.001
Identities = 5/48 (10%), Positives = 15/48 (31%)
Query: 323 GVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE 370
H + + ++ E K +W+ F+ + + +
Sbjct: 295 NKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENA 342
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 178 bits (453), Expect = 3e-52
Identities = 63/322 (19%), Positives = 114/322 (35%), Gaps = 67/322 (20%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
++D+ A +EL F G +I VL+ D DWW G G FPS +V+L +
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP 62
Query: 200 TVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAE 259
+ + C L ++ R + ELI TE ++V L V+E + +
Sbjct: 63 SQQWC-----------SDLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQ-K 110
Query: 260 CRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLE--TKLDWDAPYKSCIGETFLKHKSG 317
+++ + +++ IF N ++++ L+ L K+ + IG+
Sbjct: 111 PLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH 170
Query: 318 FHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP 377
P++ FC AL++Q ++ +F
Sbjct: 171 MQPYIR-------------------FCSC-----------QLNGAALIQQKTDEAPDFKE 200
Query: 378 AAKELARMSAARCHS---------SRPP--------------TDHPDYVKITEALEAMRD 414
K LA + R +HPD+ + ALE +
Sbjct: 201 FVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEE 260
Query: 415 VAMLINERKRRMESLEKLAAWQ 436
+ +NE R E+ ++L Q
Sbjct: 261 LCSQVNEGVREKENSDRLEWIQ 282
Score = 60.2 bits (146), Expect = 3e-10
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAF-----EHLSQIIINHS 61
++D+ A +EL F G +I VL+ D DWW G ++
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP 62
Query: 62 ISPNCDISKSLKRIRPHHALRRSVSQPLGINEL 94
C L + P R+ I+EL
Sbjct: 63 SQQWCSDLHLLDMLTPTERKRQGY-----IHEL 90
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 190 bits (482), Expect = 4e-52
Identities = 65/413 (15%), Positives = 136/413 (32%), Gaps = 60/413 (14%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+D V AV ++++ + +L I + +D
Sbjct: 122 IDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAM--------------- 166
Query: 194 RVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVS 253
D V + L S +Q +V+ + R +++ L+ +
Sbjct: 167 ---CADKVLMDMFHQDVEDINILSLTDEEPSTSGEQTYYDLVKAFMAEIRQYIRELNLII 223
Query: 254 EGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDW--DAPYKSCIGETF 311
+ + + +FS ++ IF + DI L +E ++ + +G F
Sbjct: 224 KVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCF 283
Query: 312 --LKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
L + F P+ +A I L A +L + + Q
Sbjct: 284 EDLAEELAFDPY----ESYARDILRPGFHDRFLSQLSKPG-AALYLQSIGEGFKEAVQYV 338
Query: 370 EDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINE-------- 421
L AP L + + D D + +A+ A+ +V + +
Sbjct: 339 LPRLLLAPVYHCLHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAK 397
Query: 422 --------------RKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGM 467
K + +++K+ Q+ ++GWEG+D+ + ++ I +G + RV +
Sbjct: 398 RRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK- 456
Query: 468 WTNTITLFLFDHQLVYCKRDILKRNTHV-------YKARLNIDTSQIINLPDG 513
+ +FLFD ++ CK + + K + + QI + D
Sbjct: 457 --HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDT 507
Score = 34.8 bits (79), Expect = 0.070
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIII 58
+D V AV ++++ + +L I + +D + Q +
Sbjct: 122 IDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVE 181
Query: 59 NHSISPNCDISKSLKRIR 76
+ +I D S +
Sbjct: 182 DINILSLTDEEPSTSGEQ 199
Score = 32.8 bits (74), Expect = 0.34
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Query: 302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQE 361
K F++ +HA +I D + ++F +S E+K W+AA
Sbjct: 489 RLKEKF---FMRKVQINDKDDTNEYKHAFEIILKD-ENSVIFSAKSAEEKNNWMAALISL 544
Query: 362 RALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINE 421
+ +R + KE + D + + E ++ + ++
Sbjct: 545 QYRSTLERMLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPII--- 601
Query: 422 RKRRMESLEKL 432
+ ++ KL
Sbjct: 602 ---KAGTVIKL 609
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 173 bits (441), Expect = 6e-50
Identities = 52/334 (15%), Positives = 113/334 (33%), Gaps = 64/334 (19%)
Query: 228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 287
+Q +V+ + R +++ L+ + + + + +FS ++ IF + DI
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60
Query: 288 SFLEDLETKLD--WDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK----WL 341
L +E ++ + +G F + + D +
Sbjct: 61 KLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYES-------YARDILRPGFHDR 113
Query: 342 LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP---------AAKELARMSAARCHS 392
S A +L + + Q L AP K+L S
Sbjct: 114 FLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKS------ 167
Query: 393 SRPPTDHPDYVKITEALEAMRDVAMLINE----------------------RKRRMESLE 430
D D + +A+ A+ +V + + K + +++
Sbjct: 168 ----EDQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIK 223
Query: 431 KLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK 490
K+ Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK + +
Sbjct: 224 KMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK---HERHIFLFDGLMICCKSNHGQ 280
Query: 491 R-------NTHVYKARLNIDTSQIINLPDGKGRT 517
+ K + + QI + D
Sbjct: 281 PRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYK 314
Score = 40.7 bits (95), Expect = 8e-04
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 326 VRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 362
+HA +I D+ ++F +S E+K W+AA +
Sbjct: 313 YKHAFEIILKDE-NSVIFSAKSAEEKNNWMAALISLQ 348
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 171 bits (435), Expect = 3e-48
Identities = 57/318 (17%), Positives = 110/318 (34%), Gaps = 47/318 (14%)
Query: 218 RRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR--------RNDMFSP 269
R ++ + +EL+++E+ +V++L ++ + R D +
Sbjct: 10 GRENLYFQGGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAR 69
Query: 270 EQIQTIFGNLEDILAFQSSFLEDLETKL-DWDAPYKSCIGETFLKHKSGFHPHLGVTVRH 328
E+++ L I LE+LE +L +W++ + + FL + GF H
Sbjct: 70 EELRQGLSELPAIHDLHQGILEELEERLSNWESQ--QKVADVFLAREQGFDHH------- 120
Query: 329 AIKIHCSDKDK---WLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA------ 379
H D+ L C A + F+Q Q + L
Sbjct: 121 --ATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRL-LRVVQRLFQYQ 177
Query: 380 ---KELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQ 436
+ + D +Y AL + V N+ + E+L+KL +
Sbjct: 178 VLLTDYLN------NL---CPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIE 228
Query: 437 QRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVY 496
V G DL++ + + +G +++VT LFL + L+Y K +
Sbjct: 229 HSVRGQ--GDLLQPGREFLKEGTLMKVTGK-NRRPRHLFLMNDVLLYTYPQ--KDGKYRL 283
Query: 497 KARLNIDTSQIINLPDGK 514
K L + ++ K
Sbjct: 284 KNTLAVANMKVSRPVMEK 301
Score = 38.4 bits (89), Expect = 0.005
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 3/75 (4%)
Query: 327 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMS 386
+ + + L+ S ++ W + +D + A R
Sbjct: 301 KVPYALKIETSESCLMLSASSCAERDEWYGCLSRAL---PEDYKAQALAAFHHSVEIRER 357
Query: 387 AARCHSSRPPTDHPD 401
RPPT P
Sbjct: 358 LGVSLGERPPTLVPV 372
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 168 bits (427), Expect = 1e-47
Identities = 61/340 (17%), Positives = 119/340 (35%), Gaps = 67/340 (19%)
Query: 225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILA 284
LS+ +V+ EL+ TER +VK L+ + E YL ++ + +++ +FGNL +++
Sbjct: 6 LSDADKLRKVICELLETERTYVKDLNCLMERYLKPLQKE-TFLTQDELDVLFGNLTEMVE 64
Query: 285 FQSSFLEDLE------------TKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKI 332
FQ FL+ LE K+D +G +FL + F +
Sbjct: 65 FQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLY---------SA 115
Query: 333 HCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEF--APA---------AKE 381
C+ K ++ D A AF + +Q + P +E
Sbjct: 116 FCASHTKVPKVLVKAKTDTA--FKAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRE 173
Query: 382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG 441
L + + ++ + A++ M VA INE ++ E + +
Sbjct: 174 LFA------LT---DAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQT 224
Query: 442 WEGEDLIETS-SQLIHQGEVIRVTSGMWTNTI------TLFLFDHQLVYCKRDILKR--- 491
E +++ + S L+ VI + F+F +V +D K+
Sbjct: 225 GEKKEVADLSMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKK 284
Query: 492 -------------NTHVYKARLNIDTSQIINLPDGKGRTD 518
+ ++ + + Q+ LP +
Sbjct: 285 LVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEAN 324
Score = 31.1 bits (70), Expect = 0.79
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 328 HAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
H ++ CC S E + +L + L ++ R
Sbjct: 331 HVKSESEGRPERVFHLCCSSPESRKDFLKSVHS--ILRDKHR 370
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 153 bits (387), Expect = 7e-42
Identities = 56/306 (18%), Positives = 106/306 (34%), Gaps = 48/306 (15%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
SL + R V+ EL+ TE V++L + + + + F E++Q IF +L+++
Sbjct: 20 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFF-QPMAECLFFPLEELQNIFPSLDEL 78
Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
+ S FL+ L + IG+ L G + CS +
Sbjct: 79 IEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGS---WFQKISSRFCSRQSF--- 132
Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRP------- 395
L+ K R F V++ P + L
Sbjct: 133 -ALEQLKAKQRKDPRFCA---FVQEAESR-----PRCRRLQLKD----MIPTEMQRLTKY 179
Query: 396 ----------PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW--- 442
+ + K+ A E R++ +N+ R ME L +L +Q+R++
Sbjct: 180 PLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLR 239
Query: 443 --------EGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTH 494
E ++L T +L+H+G + + + + L D L+ +R +
Sbjct: 240 QSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLK 299
Query: 495 VYKARL 500
+ L
Sbjct: 300 SHSRTL 305
Score = 31.8 bits (72), Expect = 0.47
Identities = 2/28 (7%), Positives = 10/28 (35%)
Query: 333 HCSDKDKWLLFCCRSLEDKARWLAAFQQ 360
+ + +++ ++ W A +
Sbjct: 341 TWDQEAQIYELVAQTVSERKNWCALITE 368
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 152 bits (386), Expect = 9e-41
Identities = 50/333 (15%), Positives = 101/333 (30%), Gaps = 66/333 (19%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
++ ++ R + ELI TE ++ L V E + + ++ IF N +++
Sbjct: 20 TMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAESG-FLTEGEMALIFVNWKEL 78
Query: 283 LAFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKW 340
+ + L+ L K + IG+ S + CS +
Sbjct: 79 IMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSHMQAY---------IRFCSCQLN- 128
Query: 341 LLFCCRSLEDKARWLAAFQQERALVEQDRE-DGLEF-----AP---------AAKELARM 385
L+ K F++ + D G+ P + +
Sbjct: 129 ---GAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILE- 184
Query: 386 SAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE 445
P H D+ + ALE ++ +NE R E+ ++L Q V+
Sbjct: 185 --------NTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLA 236
Query: 446 --------DLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNT---- 493
+L+H G++ + S + FLF+ L+ +
Sbjct: 237 EQLIFNSLTNCLGPRKLLHSGKLYKTKSNK---ELHGFLFNDFLLLTYMVKQFAVSSGSE 293
Query: 494 -----------HVYKARLNIDTSQIINLPDGKG 515
+YK + ++ + D
Sbjct: 294 KLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSS 326
Score = 35.4 bits (81), Expect = 0.044
Identities = 11/102 (10%), Positives = 23/102 (22%)
Query: 327 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMS 386
H S D+ ++ ++ W+ + + E A A+
Sbjct: 326 SDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKQREKAYQARSQKTSG 385
Query: 387 AARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMES 428
R K +++M R
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQ 427
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 152 bits (385), Expect = 2e-40
Identities = 56/306 (18%), Positives = 104/306 (33%), Gaps = 48/306 (15%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
SL + R V+ EL+ TE V++L + + + + F E++Q IF +L+++
Sbjct: 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFF-QPMAECLFFPLEELQNIFPSLDEL 231
Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
+ S FL+ L + IG+ L G + CS +
Sbjct: 232 IEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGS---WFQKISSRFCSRQSF--- 285
Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRP------- 395
L+ K R F E P + L
Sbjct: 286 -ALEQLKAKQRKDPRFCAFVQEAESR--------PRCRRLQLKD----MIPTEMQRLTKY 332
Query: 396 ----------PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW--- 442
+ + K+ A E R++ +N+ R ME L +L +Q+R++
Sbjct: 333 PLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLR 392
Query: 443 --------EGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTH 494
E ++L T +L+H+G + + + + L D L+ +R +
Sbjct: 393 QSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLK 452
Query: 495 VYKARL 500
+ L
Sbjct: 453 SHSRTL 458
Score = 33.5 bits (76), Expect = 0.18
Identities = 2/28 (7%), Positives = 10/28 (35%)
Query: 333 HCSDKDKWLLFCCRSLEDKARWLAAFQQ 360
+ + +++ ++ W A +
Sbjct: 494 TWDQEAQIYELVAQTVSERKNWCALITE 521
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 146 bits (369), Expect = 2e-39
Identities = 47/300 (15%), Positives = 111/300 (37%), Gaps = 44/300 (14%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
L + R V+ EL TE ++ L + + + ++ ++ E++ +F NL ++
Sbjct: 14 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFY-QRMKKENLMPREELARLFPNLPEL 72
Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
+ +S+ E ++ + + P I + L G ++ CS +
Sbjct: 73 IEIHNSWCEAMKKLRE-EGPIIKEISDLMLARFDGPA---REELQQVAAQFCSYQSI--- 125
Query: 343 FCCRSLEDKARWLAAFQQERALVEQDRE-DGLEF-----APA---------AKELARMSA 387
++ K R + FQ E + L+ + + + + +
Sbjct: 126 -ALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHT- 183
Query: 388 ARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW----- 442
++ K+ A + R++ +NE ++ E+ +L +Q+R++
Sbjct: 184 --------EGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERA 235
Query: 443 ------EGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVY 496
E + L T+ ++IH+G + S T + + L + LV ++ K +
Sbjct: 236 SNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCH 295
Score = 31.3 bits (71), Expect = 0.80
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 330 IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 360
I + + DK W+ ++
Sbjct: 333 ICTSKLGPPQIYELVALTSSDKNTWMELLEE 363
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 144 bits (364), Expect = 1e-38
Identities = 60/329 (18%), Positives = 113/329 (34%), Gaps = 55/329 (16%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
L + R V+ EL TER V+ L + + + + R + SP +++ IF NLEDI
Sbjct: 17 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFY-QRVSREGILSPSELRKIFSNLEDI 75
Query: 283 LAFQSSFLEDLETKLDWD-APYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL 341
L E ++ + IGE L SG ++HA CS++
Sbjct: 76 LQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPG---EEKLKHAAATFCSNQPF-- 130
Query: 342 LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRP------ 395
++ + + + FQ E + P + L
Sbjct: 131 --ALEMIKSRQKKDSRFQTFVQDAESN--------PLCRRLQLKD----IIPTQMQRLTK 176
Query: 396 -----------PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW-- 442
+ K+ +A + R + +N+ + E+ ++L +Q+R++
Sbjct: 177 YPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSL 236
Query: 443 ---------EGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK--- 490
E +L T ++IH+G ++ + T + L + LV ++ +
Sbjct: 237 KLSEYPNVEELRNLDLTKRKMIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVL 296
Query: 491 ---RNTHVYKARLNIDTSQIINLPDGKGR 516
A S +I L R
Sbjct: 297 RCHSKILASTADSKHTFSPVIKLSTVLVR 325
Score = 32.9 bits (75), Expect = 0.26
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 339 KWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLE 374
+ +++ +K W + A V++ DG
Sbjct: 345 QIYELVAQTVSEKTVWQDLICRMAASVKEQSVDGGH 380
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 142 bits (359), Expect = 3e-38
Identities = 45/303 (14%), Positives = 103/303 (33%), Gaps = 50/303 (16%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS-PEQIQTIFGNLEDILAFQSSF 289
V+ EL+ TE+ +V L + EGY+A + S + + +FGN++ I + +
Sbjct: 13 SMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDY 72
Query: 290 LEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRH--AIKIHCSDKDKWLLFCCRS 347
+ D + + F+KH+ H ++ + + D + +
Sbjct: 73 FLQELQRCLKDPD---WLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELRQQ 129
Query: 348 LEDKARWLAAFQQE--------RALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDH 399
L + + L + + L+ K+ +
Sbjct: 130 LGHRLQ-LNDLLIKPVQRIMKYQLLL--------------KDFLKYY---------NRAG 165
Query: 400 PDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGE 459
D + +A+E M V N+ M +L +L ++ ++ L+ + + + E
Sbjct: 166 MDTADLEQAVEVMCFVPKRCND----MMTLGRLRGFEGKLTAQ--GKLLGQDTFWVTEPE 219
Query: 460 VIRVTSGMWTNTITLFLFDHQLVYCKR-----DILKRNTHVYKARLNIDTSQIINLPDGK 514
+ S +FLF+ +++ + + +VYK + + + G
Sbjct: 220 AGGLLSS-RGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGD 278
Query: 515 GRT 517
Sbjct: 279 PCR 281
Score = 32.9 bits (75), Expect = 0.22
Identities = 4/65 (6%), Positives = 10/65 (15%), Gaps = 1/65 (1%)
Query: 336 DKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRP 395
+ + W+ Q + + + P
Sbjct: 291 GGIQRYVLQAADPAISQAWIKHVAQILESQRDFLNALQS-PIEYQRRESQTNSLGRPRGP 349
Query: 396 PTDHP 400
P
Sbjct: 350 GVGSP 354
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 142 bits (360), Expect = 8e-38
Identities = 46/300 (15%), Positives = 110/300 (36%), Gaps = 44/300 (14%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
L + R V+ EL TE ++ L + + + ++ ++ E++ +F NL ++
Sbjct: 56 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFY-QRMKKENLMPREELARLFPNLPEL 114
Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
+ +S+ E ++ + + P I + L G ++ CS +
Sbjct: 115 IEIHNSWCEAMKKLRE-EGPIIKEISDLMLARFDGPA---REELQQVAAQFCSYQSI--- 167
Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDG----LEFAPA-----------AKELARMSA 387
++ K R + FQ E + + + + + + +
Sbjct: 168 -ALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHT- 225
Query: 388 ARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG------ 441
++ K+ A + R++ +NE ++ E+ +L +Q+R++
Sbjct: 226 --------EGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERA 277
Query: 442 -----WEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVY 496
E + L T+ ++IH+G + S T + + L + LV ++ K +
Sbjct: 278 SNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCH 337
Score = 32.6 bits (74), Expect = 0.33
Identities = 7/69 (10%), Positives = 16/69 (23%), Gaps = 9/69 (13%)
Query: 292 DLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDK 351
D + + + + K F I + + DK
Sbjct: 346 DSKQTFSPVLKLNAVLIRSVATDKRAFFI---------ICTSKLGPPQIYELVALTSSDK 396
Query: 352 ARWLAAFQQ 360
W+ ++
Sbjct: 397 NTWMELLEE 405
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 136 bits (345), Expect = 1e-37
Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 50/235 (21%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
+ N + V++ ++ TE ++ K L V YL + + S I + GNLE+I
Sbjct: 6 TTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTS-EKLSSANISYLMGNLEEI 64
Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIH---CSDKDK 339
+FQ ++ LE + +G FL ++ C++
Sbjct: 65 CSFQQMLVQSLEECTK-LPEAQQRVGGCFLNLMPQMK-----------TLYLTYCANHPS 112
Query: 340 WLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA----------------KELA 383
L + + L F + + L KEL
Sbjct: 113 ----AVNVLTEHSEELGEFMETKGASSPGILV-LT----TGLSKPFMRLDKYPTLLKELE 163
Query: 384 RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQR 438
R H H D I +++ A ++++ E ++R E ++ R
Sbjct: 164 R------HM---EDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQILTEAIR 209
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 135 bits (340), Expect = 1e-35
Identities = 58/317 (18%), Positives = 106/317 (33%), Gaps = 57/317 (17%)
Query: 226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN-----DMFSPEQIQTIFGNLE 280
S +R V+ EL++TER +V+ L V EGY AE + +FGN+E
Sbjct: 7 SLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNME 66
Query: 281 DILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLG--VTVRHAIKIHCSDKD 338
+I F + D P +G FL+ F + + + D
Sbjct: 67 EIYHFHNRIFLRELESC-IDCP--ELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSD 123
Query: 339 KWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTD 398
C+ D L ++ + V++ + L KE+ + S
Sbjct: 124 CPFFQECQKKLDHKLSLDSYLLK--PVQRITKYQLLL----KEMLKYSK----------H 167
Query: 399 HPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQG 458
+ EAL ++ + +N+ + G++G + +L+ QG
Sbjct: 168 CEGAEDLQEALSSILGILKAVNDSMH-----------LIAITGYDGN--LGDLGKLLMQG 214
Query: 459 EVI------------RVTSGMWTNTITLFLFDHQLVYCKR------DILKRNTHVYKARL 500
+ + LFL + +++CK+ K ++ YK L
Sbjct: 215 SFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSL 274
Query: 501 NIDTSQIINLPDGKGRT 517
N+ I G +
Sbjct: 275 NMTAVGITENVKGDTKK 291
Score = 38.4 bits (89), Expect = 0.005
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 328 HAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRED 371
+I + +++ + + E KA W+ A + + L Q +
Sbjct: 290 KKFEIWYNAREEVYIIQAPTPEIKAAWVNAIR--KVLTSQLQAC 331
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 132 bits (333), Expect = 6e-35
Identities = 54/308 (17%), Positives = 111/308 (36%), Gaps = 57/308 (18%)
Query: 226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPE---QIQTIFGNLEDI 282
+ + + ++ ELI TE+ +V+ L + + YL E + P + IFGN+++I
Sbjct: 5 KSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEI 64
Query: 283 LAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRH--AIKIHCSDKDK 339
F ++ FL++LE +G F+ F ++ + ++
Sbjct: 65 YEFHNNIFLKELEKYEQLPE----DVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGS 120
Query: 340 WLLFCCRSLEDKARWLAAFQQE--------RALVEQDREDGLEFAPAAKELARMSAARCH 391
+ + ++++ + + L+ KEL
Sbjct: 121 YFDEIQQRHGLANS-ISSYLIKPVQRITKYQLLL--------------KELLTCC----- 160
Query: 392 SSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETS 451
+ + LE M V N+ L + + +E +GE +++ S
Sbjct: 161 ----EEGKGEI---KDGLEVMLSVPKRANDAMHL----SMLEGFDENIE-SQGELILQES 208
Query: 452 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCK--RDILKRNTHVYKARLNIDTSQIIN 509
Q+ +IR LFLF+ LV+ K +D R+ ++YK++L +
Sbjct: 209 FQVWDPKTLIR-----KGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTE 263
Query: 510 LPDGKGRT 517
+G
Sbjct: 264 HVEGDPCK 271
Score = 33.2 bits (76), Expect = 0.17
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 330 IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ 367
D ++ S+E+K W+ + + E+
Sbjct: 275 WVGRTPTSDNKIVLKASSIENKQDWIKHIR--EVIQER 310
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 110 bits (276), Expect = 7e-27
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 396 PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLI 455
P D+PD + EA+ ++ + IN + E +E + + LI++S L
Sbjct: 175 PNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYK-ERLLYLEEGQKDSLIDSSRVLC 233
Query: 456 HQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNT--HVYKARLNIDTSQIINLPDG 513
GE+ + +FLF LV + +Y+ + + + +L DG
Sbjct: 234 CHGELKNNRG----VKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDG 289
Query: 514 KGR 516
+ R
Sbjct: 290 EVR 292
Score = 93.3 bits (232), Expect = 6e-21
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 212 GSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQ 271
GS + L + + R + EL E D ++ L + Y + + + + ++
Sbjct: 1 GSSGSSGCVNQVLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKLS-IMTEQE 59
Query: 272 IQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHP 320
+ IFG L+ ++ L L +G +
Sbjct: 60 LNQIFGTLDSLIPLHEELLSQLRDVRK-PDGSTEHVGPILVGWLPCLSS 107
Score = 36.3 bits (84), Expect = 0.020
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 330 IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 362
+ + + +K +WL +Q +
Sbjct: 313 VSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 93.6 bits (233), Expect = 1e-23
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
+V AEAVWDHV M EL F+AGDVI+VLD ++DWWWG + GWFP++FVRL V+QE
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 69
Query: 199 DTVEDCLAALASG 211
D VE+ + +SG
Sbjct: 70 DEVEEG-SGPSSG 81
Score = 65.5 bits (160), Expect = 1e-13
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+V AEAVWDHV M EL F+AGDVI+VLD ++DWWWG
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQ 49
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 79.5 bits (196), Expect = 1e-18
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
+ ++ E+ F AG ++VL+ + WW+ GE GW PS ++ L +++
Sbjct: 13 TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPDPSG 72
Query: 204 CLAALASG 211
+ +SG
Sbjct: 73 KESGPSSG 80
Score = 53.6 bits (129), Expect = 2e-09
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
+ ++ E+ F AG ++VL+ + WW+ G
Sbjct: 13 TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG 49
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 79.0 bits (195), Expect = 2e-18
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
S SS + + ++ A++D A+E EL F+ G++I VLD D +WW G G
Sbjct: 3 SGSSGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIG 62
Query: 185 WFPSAFVRLRVSQEDTVED 203
FPS FV ++ E
Sbjct: 63 LFPSNFVTTNLNIETEAAA 81
Score = 57.8 bits (140), Expect = 7e-11
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D A+E EL F+ G++I VLD D +WW G
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE 56
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 79.3 bits (195), Expect = 4e-17
Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 37/212 (17%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH-SISPNCDIS 69
A +D A +EL F+ GD+++VL+ W+ + E I N+ + P+
Sbjct: 5 AKYDFKATADDELSFKRGDILKVLNEECDQNWY--KAELNGKDGFIPKNYIEMKPHPWFF 62
Query: 70 KSLKRIRPHHAL-----------RRSVSQPLGINELS-------------------PLLR 99
+ R + L R S S P G LS L
Sbjct: 63 GKIPRAKAEEMLSKQRHDGAFLIRESESAP-GDFSLSVKFGNDVQHFKVLRDGAGKYFLW 121
Query: 100 RKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFR 159
+ S + + + +A++D E ELGFR
Sbjct: 122 VVKFNSLNELVDYHRSTSVSRN---QQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFR 178
Query: 160 AGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
GD I V+D D +WW G +G FP +V
Sbjct: 179 RGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 52.4 bits (125), Expect = 6e-08
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVR 192
A +D A +EL F+ GD+++VL+ W+ G+ P ++
Sbjct: 5 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54
Score = 42.4 bits (99), Expect = 1e-04
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++D E ELGFR GD I V+D D +WW G
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA 197
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 72.4 bits (178), Expect = 3e-16
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
VV A A + + A+EL FR GDV+ + + DWW G G P ++ L E
Sbjct: 10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE 69
Query: 199 DTV 201
V
Sbjct: 70 KQV 72
Score = 55.0 bits (133), Expect = 5e-10
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
VV A A + + A+EL FR GDV+ + + DWW G
Sbjct: 10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGE 49
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 72.3 bits (178), Expect = 3e-16
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+ +
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 66
Query: 201 VEDCLAA 207
+ L
Sbjct: 67 SRENLGG 73
Score = 54.6 bits (132), Expect = 6e-10
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 44
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 71.8 bits (177), Expect = 3e-16
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
Score = 57.9 bits (141), Expect = 3e-11
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A++D A+E +ELGFR+G+V+EVLD+ + WW G
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR 40
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 71.4 bits (176), Expect = 4e-16
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
Score = 56.0 bits (136), Expect = 1e-10
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
AEA++D EL F+AGDVI +L +++DW GT
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT 43
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 71.3 bits (175), Expect = 7e-16
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
A + + A E+ + GD++ +L++ ++DWW + G+ P+A+V+ ++
Sbjct: 3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGK 60
Query: 202 EDCLAAL 208
E LA
Sbjct: 61 ELVLALY 67
Score = 51.2 bits (123), Expect = 8e-09
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A + + A E+ + GD++ +L++ ++DWW
Sbjct: 3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKV 37
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 70.7 bits (174), Expect = 1e-15
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A++ V E E+L R GD+I +L+ + DWW G + G+FP+ FV+
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQR 61
Score = 54.9 bits (133), Expect = 3e-10
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++ V E E+L R GD+I +L+ + DWW G
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK 46
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 70.7 bits (174), Expect = 1e-15
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
A+ D+ A + +L F G+ I +L DWWWG R G+ P+ V
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
Score = 56.5 bits (137), Expect = 1e-10
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
A+ D+ A + +L F G+ I +L DWWWG R
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERA 48
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 75.8 bits (185), Expect = 3e-15
Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 19/187 (10%)
Query: 13 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSL 72
+D +AE+L F+ G+++ +++ + WW + + I + + + S
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGM--IPVPY-VEKLVRSSPHG 188
Query: 73 KRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSL 132
K + + + PG L +
Sbjct: 189 KHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPST--------------- 233
Query: 133 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ A A + L GD+++V W G G FP V+
Sbjct: 234 -QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
Query: 193 LRVSQED 199
+ Q
Sbjct: 293 IFDPQNP 299
Score = 53.5 bits (127), Expect = 6e-08
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 4/144 (2%)
Query: 146 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQEDTVEDC 204
+D +AE+L F+ G+++ +++ + WW + G P +V V +
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHG 191
Query: 205 LAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN 264
S G + V + + A +R
Sbjct: 192 NRNSNSYGIPEPAHAYAQ---PQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVP 248
Query: 265 DMFSPEQIQTIFGNLEDILAFQSS 288
+ + G++ + +
Sbjct: 249 CAYDKTALALEVGDIVKVTRMNIN 272
Score = 40.0 bits (92), Expect = 0.001
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
A A + L GD+++V W G
Sbjct: 242 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN 280
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 69.6 bits (171), Expect = 3e-15
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+ A A +D+V A EL F+ G + + DWW G G P ++ +
Sbjct: 9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVV 63
Score = 53.9 bits (130), Expect = 1e-09
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ A A +D+V A EL F+ G + + DWW G
Sbjct: 9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGR 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.2 bits (192), Expect = 3e-15
Identities = 96/537 (17%), Positives = 164/537 (30%), Gaps = 175/537 (32%)
Query: 76 RP----HHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTS 131
RP H +L + P ++ L+ + P + T +DDE + +E
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP-EPTEGFA-ADDEPTTPAELVGKF 64
Query: 132 LGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
LG +V+ E + G +VL+ + F + ++
Sbjct: 65 LG--------------YVSSLVEPS--KVGQFDQVLNLCLTE------------FENCYL 96
Query: 192 R----------LRVSQEDTVEDC-------LAALASGGSKTLRRRTSISLLSN-DQVRSR 233
L + T+ + A ++ S +L + ++
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-ALFRAVGEGNAQ 155
Query: 234 VV----------------RELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFG 277
+V R+L T V L S L+E R + + +F
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR-----TTLDAEKVFT 210
Query: 278 NLEDILAFQSSFLEDLETKLDWD----APYKSC--IGETFLKH------KSGFHP----- 320
+IL +LE+ D D P SC IG L H GF P
Sbjct: 211 QGLNIL----EWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 321 HL-GVTVRH-----AIKIHCSDKD-----------KWLLFC-CRSLEDKARWLAAFQQE- 361
+L G T A+ I +D L F R E A+
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE-------AYPNTS 318
Query: 362 -RALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEA-LEAMRDVAM-L 418
+ +D + E P+ M + + ++ DYV T + L A + V + L
Sbjct: 319 LPPSILEDSLENNEGVPSP-----MLSIS-NLTQEQVQ--DYVNKTNSHLPAGKQVEISL 370
Query: 419 INERKRRM-----ESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTIT 473
+N K + +SL L ++ + G D S++ ++ +
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD----QSRIPFSERKLKFS--------N 418
Query: 474 LFL-----FDH--------QLVYCKRDILKRNTHVYKARLNI---DTSQIINLPDGK 514
FL F H L+ +D++K N + I DT DG
Sbjct: 419 RFLPVASPF-HSHLLVPASDLI--NKDLVKNNVSFNAKDIQIPVYDTF------DGS 466
Score = 68.9 bits (168), Expect = 2e-12
Identities = 73/453 (16%), Positives = 134/453 (29%), Gaps = 168/453 (37%)
Query: 2 DEDFVVLAEAVW---DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEH--LSQI 56
D++ AE V +V+ E + G +VL+ + FE+ L
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPS--KVGQFDQVLNLCLTE---------FENCYLEGN 99
Query: 57 IINHSI------SPNCDISKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRP--- 107
I H++ + + K+ + I+ + R +P S L R G
Sbjct: 100 DI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 108 ---GDGTNSLCCSDDEL------------------------LSDSESSVTSL---GMD-- 135
G G +EL L + + G++
Sbjct: 159 IFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 136 -----------EDFVVLAEAVW--------DHVAMEAEELGFRAGDVIEVLDTL------ 170
+D+++ H + A+ LGF G++ L
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 171 ---------DRDW---------------WWGTRG-EASGWFPSAFVRLRVSQEDTVEDCL 205
W + G R EA +P+ + + + D++E+
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA---YPNTSLPPSILE-DSLEN-- 330
Query: 206 AALASGGSKT--LRRRTSISLLSNDQVRSRVVRE-------------LINTERDFVKVLH 250
+ G + L SIS L+ +QV+ V + L+N ++ V
Sbjct: 331 ----NEGVPSPML----SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---- 378
Query: 251 DVS------EGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYK 304
VS G R+ +Q + F E L F + FL +P+
Sbjct: 379 -VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLP-------VASPFH 428
Query: 305 S--------CIGETFLKHKSGFHPH-LGVTVRH 328
S I + +K+ F+ + + V
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Score = 32.3 bits (73), Expect = 0.45
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 14/102 (13%)
Query: 8 LAEAVWDHVA--MEAEELGFRAGDV-IEVLDTLD-RDWWWGTRGEAFEHLSQIIINHSIS 63
L A D + + + F A D+ I V DT D D R + +S+ I++ I
Sbjct: 432 LVPAS-DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL----RVLSGS-ISERIVDCIIR 485
Query: 64 PNCDISKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGT 105
+ + + H L P G + L L R GT
Sbjct: 486 LPVKWETTTQ-FKATHIL---DFGPGGASGLGVLTHRNKDGT 523
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 68.7 bits (169), Expect = 3e-15
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+A++D E+ EL F+ GDVI +++ D +WW G G FPS +V
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55
Score = 55.2 bits (134), Expect = 2e-10
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++D E+ EL F+ GDVI +++ D +WW G
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ 41
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 68.8 bits (169), Expect = 4e-15
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
A++D A+E EL F+ G++I VLD D +WW G +G FPS FV +S
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLS 62
Score = 53.4 bits (129), Expect = 1e-09
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D A+E EL F+ G++I VLD D +WW G
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE 44
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 70.1 bits (172), Expect = 4e-15
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 120 ELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 179
+LL S T V+ A++D+ A +EL F G +I V++ D DWW G
Sbjct: 18 KLLGPSSERATPAFHPVCQVI---AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI 74
Query: 180 GEASGWFPSAFVRLRVSQED 199
+G FPS +V++
Sbjct: 75 NGVTGLFPSNYVKMTTDSSG 94
Score = 52.8 bits (127), Expect = 4e-09
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D+ A +EL F G +I V++ D DWW G
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE 73
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 69.3 bits (170), Expect = 5e-15
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
A+A+ D + +ELGFR D+I ++ D W G GWFP+ FV + + +
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV-LDERSKE 68
Query: 202 EDCLAALASG 211
+ +SG
Sbjct: 69 YSIASGPSSG 78
Score = 52.3 bits (126), Expect = 4e-09
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A+A+ D + +ELGFR D+I ++ D W G
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE 46
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 68.8 bits (169), Expect = 5e-15
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
MDE L ++D+ EL + GD++ +L++ ++DWW G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
Score = 54.2 bits (131), Expect = 7e-10
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
MDE L ++D+ EL + GD++ +L++ ++DWW
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE 45
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 69.0 bits (169), Expect = 6e-15
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+ +
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 61
Score = 52.0 bits (125), Expect = 6e-09
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 41
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 68.1 bits (167), Expect = 7e-15
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLA 206
M E+ + GD++ +L++ ++DWW + G+ P+A+V+ ++ E LA
Sbjct: 1 MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGKELVLA 55
Score = 48.9 bits (117), Expect = 5e-08
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 18 MEAEELGFRAGDVIEVLDTLDRDWWWGT 45
M E+ + GD++ +L++ ++DWW
Sbjct: 1 MGPREVTMKKGDILTLLNSTNKDWWKVE 28
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 68.7 bits (168), Expect = 7e-15
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 150 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALA 209
AM E+ + GD++ +L++ ++DWW + G+ P+A+V+ ++ E LA
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGKELVLALYD 60
Query: 210 S 210
Sbjct: 61 Y 61
Score = 50.6 bits (121), Expect = 1e-08
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 17 AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
AM E+ + GD++ +L++ ++DWW
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVE 30
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 69.0 bits (169), Expect = 7e-15
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
G DE L A++D+ E+ + GD++ +L++ ++DWW + G
Sbjct: 3 GSHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 62
Query: 185 WFPSAFVRLRVSQED 199
+ P+A+V+ +
Sbjct: 63 FVPAAYVKKLAAAWS 77
Score = 51.6 bits (124), Expect = 8e-09
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
DE L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 13 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 56
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 68.0 bits (167), Expect = 8e-15
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56
Score = 53.7 bits (130), Expect = 7e-10
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++D E ELGFR GD I V+D D +WW G
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA 41
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 74.1 bits (181), Expect = 9e-15
Identities = 25/197 (12%), Positives = 52/197 (26%), Gaps = 45/197 (22%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDI 68
+ +L F G+ +E+L ++DWW
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEA------------------------ 185
Query: 69 SKSLKRIRPHHALRRSVSQPLGI---N--ELSPLLRRKPIGTRPGDGTNSLCCSDDELLS 123
R+ G+ N ++ + E S
Sbjct: 186 --------------RNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFS 231
Query: 124 DSESSVTSLGMDEDFVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 181
+ +S ++ + A+ +D V A + +L + G + V + +
Sbjct: 232 SASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDG 291
Query: 182 ASGWFPSAFVRLRVSQE 198
G P ++R E
Sbjct: 292 QIGSVPHTYLRFTAVSE 308
Score = 63.3 bits (153), Expect = 3e-11
Identities = 27/189 (14%), Positives = 64/189 (33%), Gaps = 14/189 (7%)
Query: 20 AEELGFRAGDVIEVLDTLD-RDWWWG--TRGEAFEHLSQ-------IIINHSISPNCDIS 69
+ D + R +++ +R EA + L + ++ S P + S
Sbjct: 21 MASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPG-EYS 79
Query: 70 KSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSV 129
+++ +A+ + + E I + +L + S +
Sbjct: 80 LTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLL 139
Query: 130 TSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPS 188
+ VV + +L F G+ +E+L ++DWW +G P+
Sbjct: 140 AAYKKPIIEVV--VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPA 197
Query: 189 AFVRLRVSQ 197
+V++++
Sbjct: 198 NYVQIQMEF 206
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 68.6 bits (168), Expect = 1e-14
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 130 TSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFP 187
+S +V+ A+ ++ L F GD+I++L TL+ W +G+ G SG FP
Sbjct: 2 SSGSSGSGYVI---ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFP 58
Query: 188 SAFVRL 193
+ V+
Sbjct: 59 ADIVQP 64
Score = 51.7 bits (124), Expect = 8e-09
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
A+ ++ L F GD+I++L TL+ W +G+
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS 49
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 73.8 bits (180), Expect = 1e-14
Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 32/196 (16%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH--SISPNCD 67
A++D + E+L F+ GD++ + D + WW E + I + + P
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM--IPVPYVEKYRPASA 195
Query: 68 ISKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSES 127
+L + + + P P + + G
Sbjct: 196 SVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYAR-------------- 241
Query: 128 SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFP 187
A + L G++++V W G G FP
Sbjct: 242 --------------VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFP 287
Query: 188 SAFVRLRVSQEDTVED 203
VRL Q +
Sbjct: 288 FTHVRLLDQQNPEEDF 303
Score = 55.7 bits (133), Expect = 1e-08
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 1/110 (0%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQEDTV 201
A++D + E+L F+ GD++ + D + WW E G P +V +V
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASV 197
Query: 202 EDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHD 251
+ G + V + + V
Sbjct: 198 SALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRV 247
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 67.2 bits (165), Expect = 1e-14
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
V + A++ +EL F GD+I + D D +WW GT +G PS +V
Sbjct: 3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
Score = 52.1 bits (126), Expect = 3e-09
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
V + A++ +EL F GD+I + D D +WW GT
Sbjct: 3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT 42
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 67.8 bits (166), Expect = 1e-14
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
+A++ A + +EL GD++ + + + WW+G+ G FP+A+V S
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNT 69
Query: 202 EDCLAALASG 211
+ +SG
Sbjct: 70 ATKASGPSSG 79
Score = 47.0 bits (112), Expect = 3e-07
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++ A + +EL GD++ + + + WW+G+
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS 46
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 67.8 bits (166), Expect = 1e-14
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
S SS T + D + A A++D+ A +E+ F D+I ++ +D WW G G
Sbjct: 3 SGSSGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYG 62
Query: 185 WFPSAFVRLRVSQE 198
FP+ +V LR S
Sbjct: 63 LFPANYVELRQSGP 76
Score = 49.3 bits (118), Expect = 5e-08
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A++D+ A +E+ F D+I ++ +D WW G
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV 56
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 67.2 bits (165), Expect = 1e-14
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ A++ +EL F GD+I + D D +WW GT +G PS +V
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60
Score = 52.6 bits (127), Expect = 2e-09
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ A++ +EL F GD+I + D D +WW GT
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT 46
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 67.7 bits (166), Expect = 2e-14
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A++D A E EL F+AG++I VLD D +WW G + G FPS FV
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA 71
Score = 53.1 bits (128), Expect = 2e-09
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D A E EL F+AG++I VLD D +WW G
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE 56
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 67.4 bits (165), Expect = 2e-14
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
S SS ++ A++D+ + +EL F+ G +I V+ D W+ G +G
Sbjct: 3 SGSSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTG 62
Query: 185 WFPSAFVRL 193
FP +V
Sbjct: 63 LFPGNYVES 71
Score = 49.7 bits (119), Expect = 3e-08
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D+ + +EL F+ G +I V+ D W+ G
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV 56
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 66.9 bits (164), Expect = 2e-14
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
V ++ E EL +AG+V++V++ + WW+ + E GW P+ ++
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60
Score = 49.6 bits (119), Expect = 3e-08
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
V ++ E EL +AG+V++V++ + WW+ +
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS 49
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 67.0 bits (164), Expect = 2e-14
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
VLA+A++D+VA +EL FR GD++ VL WW + G P +++ V
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVG 63
Query: 197 QED 199
D
Sbjct: 64 MYD 66
Score = 52.3 bits (126), Expect = 3e-09
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGT 45
VLA+A++D+VA +EL FR GD++ VL WW +
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS 45
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 66.4 bits (163), Expect = 3e-14
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
EA++ + +LG + GD +++L+ L +W+ G+ +G FP+ +V+
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
Score = 53.3 bits (129), Expect = 9e-10
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
EA++ + +LG + GD +++L+ L +W+ G+
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGS 41
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 66.5 bits (163), Expect = 3e-14
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+ +++++ +EL + GD+I++ + ++ WW GT G FPS FV+
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61
Score = 49.9 bits (120), Expect = 2e-08
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ +++++ +EL + GD+I++ + ++ WW GT
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT 46
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 66.1 bits (162), Expect = 3e-14
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
+ +++++ +EL + GD+I++ + ++ WW GT G FPS FV+ +
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHH 61
Score = 49.2 bits (118), Expect = 4e-08
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ +++++ +EL + GD+I++ + ++ WW GT
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT 40
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 66.6 bits (163), Expect = 4e-14
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 122 LSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 181
++ MD AEA++D EL F+AGDVI +L +++DW GT
Sbjct: 1 MNHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG 60
Query: 182 ASGWFPSAFVRL 193
A+G FP +FV++
Sbjct: 61 ATGIFPLSFVKI 72
Score = 50.4 bits (121), Expect = 2e-08
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
AEA++D EL F+AGDVI +L +++DW GT
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT 57
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 67.1 bits (164), Expect = 4e-14
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
+ + ++ +EL + GD+IEV+ ++ WW G +G FPS F++ + D +
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDEL 80
Score = 50.1 bits (120), Expect = 4e-08
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ + ++ +EL + GD+IEV+ ++ WW G
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV 57
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 66.7 bits (163), Expect = 5e-14
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT-R 179
S SS T+ ED V+A A +D VA+ EE+ FRAGD++ + R W +
Sbjct: 3 SGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD 62
Query: 180 GEASGWFPSAFVRL 193
G+ +G P+ +V++
Sbjct: 63 GQTTGLIPANYVKI 76
Score = 50.6 bits (121), Expect = 3e-08
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT 45
ED V+A A +D VA+ EE+ FRAGD++ + R W +
Sbjct: 13 GEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 65.7 bits (161), Expect = 6e-14
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
++ V EEL G+++ VL + +W G P ++
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYL 59
Score = 51.4 bits (124), Expect = 6e-09
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
++ V EEL G+++ VL + +W
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF 47
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 66.4 bits (162), Expect = 6e-14
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHV-AMEAEELGFRAGDVIEVLDTLDRDWWWG---- 177
S S G+ + A+ D + L RAGDVI VL+ W G
Sbjct: 2 SSHHHHHHSSGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHE 61
Query: 178 --TRGEASGWFPSAFVRL 193
+ G+FP V +
Sbjct: 62 SQRGTDRIGYFPPGIVEV 79
Score = 49.9 bits (119), Expect = 3e-08
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 9 AEAVWDHV-AMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A+ D + L RAGDVI VL+ W G
Sbjct: 21 VRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKG 57
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 65.3 bits (160), Expect = 6e-14
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+A++ + A + +EL F A D+I+++ WW G G FP+ +V
Sbjct: 8 CKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59
Score = 50.7 bits (122), Expect = 1e-08
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++ + A + +EL F A D+I+++ WW G
Sbjct: 8 CKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR 44
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 65.8 bits (161), Expect = 7e-14
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSAFVRL 193
+ ++D A +EL F G+VI V D++WW G + E G FP +FV +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
Score = 52.3 bits (126), Expect = 3e-09
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ ++D A +EL F G+VI V D++WW G
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGH 49
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 65.4 bits (160), Expect = 8e-14
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
A++ + ++E +L F G+ I V D +WW G+ G+ SG FPS +V+ + S +
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68
Score = 48.8 bits (117), Expect = 6e-08
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++ + ++E +L F G+ I V D +WW G+
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGS 46
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 65.4 bits (160), Expect = 8e-14
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+A++D ELGFR GD+I + + +D +W+ G SG+FP ++V++
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQV 67
Score = 50.7 bits (122), Expect = 1e-08
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++D ELGFR GD+I + + +D +W+ G
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGM 52
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 65.4 bits (160), Expect = 9e-14
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A++D ELGF+ GD+I + + +D +W+ G SG+FP +V +
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61
Score = 50.0 bits (120), Expect = 2e-08
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D ELGF+ GD+I + + +D +W+ G
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM 46
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 64.9 bits (159), Expect = 9e-14
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
EA++ + A + E+L F+ GD+I VL ++ +W G G FP FV +
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62
Score = 51.8 bits (125), Expect = 4e-09
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
EA++ + A + E+L F+ GD+I VL ++ +W G
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE 44
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 68.6 bits (167), Expect = 9e-14
Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 12/115 (10%)
Query: 396 PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE---------GWEGED 446
+ + + ++L ++DV ++ + E +L + + G
Sbjct: 4 KDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAK 63
Query: 447 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLN 501
+L+ G V + + L LV+ + K +++ +
Sbjct: 64 EDLKRKKLVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQE---KDQKYIFASLDQ 115
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 65.4 bits (160), Expect = 1e-13
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
A+A+ A + L F D+I VL+ +WW+G GWFP ++V++ E
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSESGP 71
Query: 202 ED 203
Sbjct: 72 SS 73
Score = 46.6 bits (111), Expect = 3e-07
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A+A+ A + L F D+I VL+ +WW+G
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGE 48
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 65.9 bits (161), Expect = 1e-13
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
S SS D + A ++++A +EL G + V++ WW G+ G
Sbjct: 3 SGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVG 62
Query: 185 WFPSAFVRLRVSQEDTVEDCLAALASGGS 213
WFPS +V E+ + SG S
Sbjct: 63 WFPSNYV-----TEEGDSPLGDHVGSGPS 86
Score = 45.9 bits (109), Expect = 9e-07
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
A ++++A +EL G + V++ WW G+
Sbjct: 20 AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN 58
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 64.9 bits (159), Expect = 1e-13
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A A +D+V A EL F+ G + + DWW G G P ++ +
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
Score = 49.5 bits (119), Expect = 3e-08
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A +D+V A EL F+ G + + DWW G
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGR 45
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 65.0 bits (159), Expect = 1e-13
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A++D+ A +EL AGD++EV+ + WW R G+ P +++
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEK 62
Score = 48.8 bits (117), Expect = 5e-08
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
A++D+ A +EL AGD++EV+ + WW R
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERN 49
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 65.5 bits (160), Expect = 1e-13
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-----RGEASGWFPSAFVRL 193
+A+ +VA +E+L G +I +L WW G + GWFP++ V+L
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
Score = 49.3 bits (118), Expect = 4e-08
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A+ +VA +E+L G +I +L WW G
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGE 46
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 64.5 bits (158), Expect = 1e-13
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+A++D+ A +EL F+ GD I V WW G GW P+ +V+
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++D+ A +EL F+ GD I V WW G
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE 42
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 65.6 bits (160), Expect = 1e-13
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 182
S S L ++ V A+A+ V A + L GD+++V W G
Sbjct: 2 SSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR 61
Query: 183 SGWFPSAFVRLRVSQE 198
G FP V++ Q
Sbjct: 62 KGLFPFTHVKIFDPQN 77
Score = 47.9 bits (114), Expect = 2e-07
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 7 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
V A+A+ V A + L GD+++V W G
Sbjct: 17 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE 57
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 71.2 bits (173), Expect = 1e-13
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL--RVSQED 199
AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++ +ED
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEED 236
Query: 200 TVEDCLAALASGGSKTLRRRTSIS--------------LLSNDQVRSRVVRELINTERDF 245
+ L + + + ++ L + R + + E D
Sbjct: 237 DPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDL 296
Query: 246 VKVLHDVSEG-YLAECRRRND 265
V++L D + + R
Sbjct: 297 VRLLSDEDVALMVRQARGLPS 317
Score = 55.4 bits (132), Expect = 2e-08
Identities = 38/194 (19%), Positives = 58/194 (29%), Gaps = 41/194 (21%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDI 68
AEA++D EL F+AGDVI +L +++DW GT A I P
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA----------TGIFP---- 222
Query: 69 SKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESS 128
+K ++ + + + D S LL D
Sbjct: 223 LSFVKILKD-------FPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLEL 275
Query: 129 VTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGW 185
ED A GD++ +L D
Sbjct: 276 TRREFQREDI--------------ALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRL 321
Query: 186 FPSAFVRLRVSQED 199
FP +L ++Q+D
Sbjct: 322 FPW---KLHITQKD 332
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 65.0 bits (159), Expect = 1e-13
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
++ +A ++ +EL GD+I V + WW GT +GWFPS +VR S E
Sbjct: 10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE 69
Score = 47.7 bits (114), Expect = 2e-07
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
++ +A ++ +EL GD+I V + WW GT
Sbjct: 10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT 49
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 65.0 bits (159), Expect = 1e-13
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
V + + +E+GF G +EV+ WW+ GW P+++++
Sbjct: 13 TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
Score = 47.7 bits (114), Expect = 2e-07
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
V + + +E+GF G +EV+ WW+
Sbjct: 13 TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL 49
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 65.1 bits (159), Expect = 1e-13
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEA 182
S SS + + + A++ + +L F+AGD I V+ D DWW G
Sbjct: 3 SGSSGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQ 62
Query: 183 SGWFPSAFVRL 193
+G FP+ +V +
Sbjct: 63 TGIFPANYVTM 73
Score = 48.5 bits (116), Expect = 9e-08
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGT 45
A++ + +L F+AGD I V+ D DWW G
Sbjct: 20 VTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK 58
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 64.5 bits (158), Expect = 1e-13
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+V A +D+ A +EL G++I + D WW G G FP FVR
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55
Score = 48.7 bits (117), Expect = 5e-08
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+V A +D+ A +EL G++I + D WW G
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ 40
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 64.6 bits (158), Expect = 1e-13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
++ A ++ +EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60
Score = 49.2 bits (118), Expect = 4e-08
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
++ A ++ +EL F GDVI V + WW GT
Sbjct: 6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT 45
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 64.6 bits (158), Expect = 1e-13
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
++D ELGF+ GD+I + + +D +W+ G SG+FP +V +
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57
Score = 49.5 bits (119), Expect = 3e-08
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
++D ELGF+ GD+I + + +D +W+ G
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGM 42
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 64.1 bits (157), Expect = 1e-13
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
A A +D+ A E EL F D I ++ +D DWW G + + G FPS +V L
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
Score = 53.0 bits (128), Expect = 1e-09
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A +D+ A E EL F D I ++ +D DWW G
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGE 39
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 64.6 bits (158), Expect = 2e-13
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL 193
+A++D+ A ++EL F G +I + WW G +FPS +V
Sbjct: 8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62
Score = 48.4 bits (116), Expect = 7e-08
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++D+ A ++EL F G +I + WW G
Sbjct: 8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGD 46
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 64.7 bits (158), Expect = 2e-13
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR 194
D A++D+ A ++EL GD+I V + DWW+G+ +G+ G+FP+ V
Sbjct: 4 DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQ-EGYFPANHVASE 62
Query: 195 VSQED 199
++
Sbjct: 63 TLYQE 67
Score = 51.2 bits (123), Expect = 9e-09
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
D A++D+ A ++EL GD+I V + DWW+G+
Sbjct: 4 DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGS 45
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 64.2 bits (157), Expect = 2e-13
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194
A A++D+ A +E+ F D+I ++ +D WW G G FP+ +V LR
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
Score = 50.3 bits (121), Expect = 2e-08
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A++D+ A +E+ F D+I ++ +D WW G
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV 48
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 64.7 bits (158), Expect = 2e-13
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 128 SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR----DWWWGTRGEAS 183
S S G + + + AV+ A EL A +++L+ D +WW
Sbjct: 2 SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKK 61
Query: 184 GWFPSAFVR 192
G+ PS ++R
Sbjct: 62 GYVPSNYIR 70
Score = 48.1 bits (115), Expect = 1e-07
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDR----DWWWG 44
AV+ A EL A +++L+ D +WW
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLA 55
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 64.4 bits (157), Expect = 2e-13
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---------GWFPSAFV 191
A++D+ A AE+L FRAGD ++VLDT WW E G+ PS +V
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
Score = 55.5 bits (134), Expect = 3e-10
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D+ A AE+L FRAGD ++VLDT WW
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLA 45
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 64.2 bits (157), Expect = 2e-13
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
+ + ++ +EL + GD+IEV+ ++ WW G +G FPS F++
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61
Score = 48.4 bits (116), Expect = 7e-08
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ + ++ +EL + GD+IEV+ ++ WW G
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV 46
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 63.8 bits (156), Expect = 2e-13
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
A ++ +EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57
Score = 48.8 bits (117), Expect = 4e-08
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A ++ +EL F GDVI V + WW GT
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT 43
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 64.2 bits (157), Expect = 2e-13
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
A A ++ E+ FR G+ I +L +D +W+ G G FP +V +
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 63
Score = 51.9 bits (125), Expect = 5e-09
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A ++ E+ FR G+ I +L +D +W+ G
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGR 46
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 63.8 bits (156), Expect = 2e-13
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A A +D A +EL + GD++ + +D++W+ G G FP ++ L
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61
Score = 49.1 bits (118), Expect = 4e-08
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A +D A +EL + GD++ + +D++W+ G
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE 46
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 63.5 bits (155), Expect = 3e-13
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 140 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197
+ A + V A + L G++++V W G G FP VRL + Q
Sbjct: 7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL-LDQ 65
Query: 198 ED 199
++
Sbjct: 66 QN 67
Score = 47.7 bits (114), Expect = 1e-07
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 7 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+ A + V A + L G++++V W G
Sbjct: 7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE 47
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 63.9 bits (156), Expect = 3e-13
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQE 198
A++D+ A ++L F G+ ++L++ + DWW +G+ PS ++ +
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLD 66
Score = 52.0 bits (125), Expect = 6e-09
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D+ A ++L F G+ ++L++ + DWW
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEAR 44
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 63.5 bits (155), Expect = 4e-13
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 140 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197
V A+A+ V A + L GD+++V W G G FP V++ Q
Sbjct: 2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 61
Query: 198 EDTVED 203
+
Sbjct: 62 NPDENE 67
Score = 46.5 bits (111), Expect = 3e-07
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 7 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
V A+A+ V A + L GD+++V W G
Sbjct: 2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE 42
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 63.5 bits (155), Expect = 4e-13
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS 196
F +A++D+ A +EL F +I+ ++ + WW G G+ WFPS +V V+
Sbjct: 5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64
Query: 197 QEDTVED 203
E D
Sbjct: 65 PEGIHRD 71
Score = 48.4 bits (116), Expect = 8e-08
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
F +A++D+ A +EL F +I+ ++ + WW G
Sbjct: 5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD 45
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 63.6 bits (155), Expect = 5e-13
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGE 181
S SS A A + EL FR G+ I ++ ++ +W+ G G
Sbjct: 3 SGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGR 62
Query: 182 ASGWFPSAFVRLRVSQEDTVEDCLAALASGG 212
G FP+++V +VS+E + C + S G
Sbjct: 63 -QGIFPASYV--QVSREPRLRLCDDSGPSSG 90
Score = 51.3 bits (123), Expect = 1e-08
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A + EL FR G+ I ++ ++ +W+ G
Sbjct: 20 AVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGR 56
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 62.6 bits (153), Expect = 6e-13
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A+A+ ++ +L F GDVI + LD +W+ G SG FP++ V +
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61
Score = 47.6 bits (114), Expect = 1e-07
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A+A+ ++ +L F GDVI + LD +W+ G
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGE 46
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 63.2 bits (154), Expect = 7e-13
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVRL 193
A A+ D+ + L F+ D+I + + W+ G+ G FP V +
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWF--MGQLNGKEGSFPVDHVEI 65
Score = 50.4 bits (121), Expect = 2e-08
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
A A+ D+ + L F+ D+I + + W+ G+
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWF--MGQ 50
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 62.7 bits (153), Expect = 7e-13
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
A A ++ E+ FR G+ I +L +D +W+ G G FP +V +
Sbjct: 9 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 62
Score = 50.7 bits (122), Expect = 1e-08
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A ++ E+ FR G+ I +L +D +W+ G
Sbjct: 9 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGR 45
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 62.7 bits (153), Expect = 7e-13
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-----RGEASGWFPSAFVRLR 194
A + + + ++L F I V D +W++G G FP +FV ++
Sbjct: 12 AQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ 67
Score = 50.4 bits (121), Expect = 2e-08
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A + + + ++L F I V D +W++G
Sbjct: 12 AQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGE 46
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 62.8 bits (153), Expect = 9e-13
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRG 180
+ + + G ++ VV A++D+ A+ E+L F+ GD + VL+ +WW
Sbjct: 12 NSNTPGIREAGSEDIIVV---ALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLAT 67
Query: 181 EASGWFPSAFVRLRVSQE 198
G+ PS +V S E
Sbjct: 68 RKEGYIPSNYVARVDSLE 85
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
++ VV A++D+ A+ E+L F+ GD + VL+ +WW
Sbjct: 24 EDIIVV---ALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKA 62
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 62.2 bits (152), Expect = 9e-13
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A +D A +EL + GD++ + +D++W G G FP+ +V +
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
Score = 48.7 bits (117), Expect = 5e-08
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A +D A +EL + GD++ + +D++W G
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGE 40
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 62.7 bits (153), Expect = 9e-13
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RG 180
S + + T G V A++D+ A+ ++L F G+ ++L++ + DWW
Sbjct: 2 SMTGTLRTRGGTGVTLFV---ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTT 58
Query: 181 EASGWFPSAFV 191
+G+ PS +V
Sbjct: 59 GETGYIPSNYV 69
Score = 52.3 bits (126), Expect = 3e-09
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D+ A+ ++L F G+ ++L++ + DWW
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEAR 54
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 66.2 bits (161), Expect = 9e-13
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
A+ D+ E+ GDV+EV++ + WW+ GW P++F+ S ++T
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 72
Score = 66.2 bits (161), Expect = 9e-13
Identities = 20/95 (21%), Positives = 41/95 (43%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQA 143
Query: 202 EDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVR 236
+ + A ++R SI S ++ R
Sbjct: 144 QRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYR 178
Score = 48.1 bits (114), Expect = 1e-06
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
A+ D+ E+ GDV+EV++ + WW+
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKA 53
Score = 47.3 bits (112), Expect = 3e-06
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
A+ + A+E +E+ G+ +EV+ L WW + +
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDD 123
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 62.9 bits (153), Expect = 1e-12
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG--TRG 180
S SS S G + + + ++ ++ EEL F G+ +EV++ + D WW RG
Sbjct: 3 SGSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARG 62
Query: 181 EASGWFPSAFVRLRVSQE 198
+ G P +V +
Sbjct: 63 Q-VGLVPKNYVVVLSDGP 79
Score = 49.0 bits (117), Expect = 8e-08
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG 44
+ + + ++ ++ EEL F G+ +EV++ + D WW
Sbjct: 14 SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKC 57
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 62.3 bits (152), Expect = 1e-12
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
A A +D A +EL F+ GD+++VL + D++W+ G+ P ++ ++ E
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFI 71
Query: 201 VED 203
V D
Sbjct: 72 VTD 74
Score = 46.1 bits (110), Expect = 5e-07
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGT 45
A A +D A +EL F+ GD+++VL + D++W+
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE 49
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 61.8 bits (151), Expect = 1e-12
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 193
A A++ E+ +L FR GDVI +L D DWW G G FP+ +V L
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
Score = 48.7 bits (117), Expect = 5e-08
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGT 45
A A++ E+ +L FR GDVI +L D DWW G
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR 44
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 61.9 bits (151), Expect = 1e-12
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 142 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRD-WWWGT--RGEASGWFPSAFVRL 193
+ ++ H A + L F GDVI +L ++D W +G +A GWFPS++ +L
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64
Score = 43.8 bits (104), Expect = 3e-06
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRD-WWWGT 45
+ ++ H A + L F GDVI +L ++D W +G
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGE 47
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 61.5 bits (150), Expect = 1e-12
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
A++D+ A + +E+ FR GD I + +D W +GT R +G P+ ++
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
Score = 50.7 bits (122), Expect = 9e-09
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D+ A + +E+ FR GD I + +D W +GT
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGT 45
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 62.0 bits (151), Expect = 2e-12
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRGEASGWFPSAFVRL 193
A ++D+ A + EL A +VI V +D DW G RG G P ++ L
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73
Score = 45.8 bits (109), Expect = 8e-07
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRG 47
A ++D+ A + EL A +VI V +D DW G RG
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG 60
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 62.0 bits (151), Expect = 2e-12
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRLRVSQE 198
A++D+ A +L F G+ ++L+ DWW +G+ PS +V S +
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
Score = 50.8 bits (122), Expect = 2e-08
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++D+ A +L F G+ ++L+ DWW
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEAR 45
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 61.5 bits (150), Expect = 2e-12
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 144 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
A+ + + + +E+ F GD+ V + L+ W W T R + G V
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63
Score = 48.1 bits (115), Expect = 1e-07
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT 45
A+ + + + +E+ F GD+ V + L+ W W T
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVT 47
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 61.5 bits (150), Expect = 2e-12
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
A+ + A EEL + G+ I VL W G +G FPS +V
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
Score = 49.9 bits (120), Expect = 2e-08
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A+ + A EEL + G+ I VL W G
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGL 46
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 61.0 bits (149), Expect = 2e-12
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVR 192
EA++ + A +E+ GD+I V+ D W GE G FP+++ +
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWT--YGECDGLKGLFPTSYCK 54
Score = 49.1 bits (118), Expect = 3e-08
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
EA++ + A +E+ GD+I V+ D W GE
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWT--YGE 40
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 61.6 bits (150), Expect = 2e-12
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 135 DEDFVVLAEAVWDHVAMEAE--ELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAF 190
D++F+ A+A++ + A + + E+ F ++++V D + WW GE +G PS +
Sbjct: 1 DDNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGE-TGIIPSNY 58
Query: 191 VRLRVSQEDT 200
V+L E+
Sbjct: 59 VQLIDGPEEM 68
Score = 48.1 bits (115), Expect = 1e-07
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 2 DEDFVVLAEAVWDHVAMEAE--ELGFRAGDVIEVLDTLDRDWWWGTR 46
D++F+ A+A++ + A + + E+ F ++++V D + WW R
Sbjct: 1 DDNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARR 46
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 61.1 bits (149), Expect = 2e-12
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVR 192
+A++D+ A +EL F +I+ ++ D WW G G+ WFPS +V
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57
Score = 48.8 bits (117), Expect = 5e-08
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
+A++D+ A +EL F +I+ ++ D WW G
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGD 42
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 61.2 bits (149), Expect = 2e-12
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGWFPSAFV 191
L A++D+ E+ + GD++ +L++ ++DWW G E G+ P+A+V
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Score = 52.3 bits (126), Expect = 3e-09
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 39
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 61.1 bits (149), Expect = 2e-12
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 191
D + V A++D VA L G+ + VL W GW PSA++
Sbjct: 4 DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58
Score = 48.3 bits (116), Expect = 6e-08
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
D + V A++D VA L G+ + VL W +
Sbjct: 4 DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ 45
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 62.5 bits (152), Expect = 2e-12
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA-- 182
S S T L V A++D+ A E+L F+ G+ ++++ + DWW
Sbjct: 16 SSSYPTGLTGGVTIFV---ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGK 72
Query: 183 SGWFPSAFVRLRVSQE 198
SG+ PS +V S +
Sbjct: 73 SGYIPSNYVVPADSIQ 88
Score = 51.3 bits (123), Expect = 2e-08
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
A++D+ A E+L F+ G+ ++++ + DWW
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARS 67
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 60.6 bits (148), Expect = 3e-12
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
A++D + E+L F+ GD++ + D + WW + G+ G P +V
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK-RGMIPVPYV 54
Score = 51.0 bits (123), Expect = 8e-09
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D + E+L F+ GD++ + D + WW
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA 39
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 60.7 bits (148), Expect = 3e-12
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVRL 193
+V +D+ A+ +EL R G++I + L + W G G FP FV+
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56
Score = 47.6 bits (114), Expect = 1e-07
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
+V +D+ A+ +EL R G++I + L + W GE
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWL--EGE 41
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 60.7 bits (148), Expect = 3e-12
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWG--TRGEASGWFPSAFVRLR 194
A ++ ++L F GDV+ ++ T D +W+ G G P+ +V+ R
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGR-EGIIPANYVQKR 68
Score = 51.9 bits (125), Expect = 5e-09
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
A ++ ++L F GDV+ ++ W+ +
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK 51
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 60.7 bits (148), Expect = 4e-12
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L E
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEH 64
Score = 44.9 bits (107), Expect = 1e-06
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
+ ++ + A +EL + GD++ ++ D +D WW G
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE 43
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 60.4 bits (147), Expect = 4e-12
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
Score = 45.0 bits (107), Expect = 1e-06
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
+ ++ + A +EL + GD++ ++ D +D WW G
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE 48
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 60.9 bits (148), Expect = 4e-12
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRLR 194
+H + EL FR GDV+ +L+ + W+ + S G + +R R
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER 75
Score = 50.1 bits (120), Expect = 2e-08
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
+H + EL FR GDV+ +L+ + W+ +
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHT 60
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 60.3 bits (147), Expect = 4e-12
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
++ + +EL FR G++I ++ +T + WW G G FP F
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62
Score = 45.7 bits (109), Expect = 6e-07
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
++ + +EL FR G++I ++ +T + WW G
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE 47
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 60.5 bits (147), Expect = 5e-12
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW------GTRGEASGWFPSAFV 191
+WD + EEL FRAGDV V + WWW A G+ P ++
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARKEE-QWWWATLLDEAGGAVAQGYVPHNYL 67
Score = 49.7 bits (119), Expect = 3e-08
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQ 55
+WD + EEL FRAGDV V ++ WW EA ++Q
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQ 59
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 60.3 bits (147), Expect = 5e-12
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFV 191
M + A++D++ M A +L R GD +L+ + WW + G+ PS +V
Sbjct: 3 MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
Score = 50.7 bits (122), Expect = 1e-08
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
M + A++D++ M A +L R GD +L+ + WW
Sbjct: 3 MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRA 46
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 59.9 bits (146), Expect = 6e-12
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
A++D + E+L F+ GD++ + D + WW + G+ G P +V
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK-RGMIPVPYV 56
Score = 50.3 bits (121), Expect = 1e-08
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D + E+L F+ GD++ + D + WW
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA 41
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 59.9 bits (146), Expect = 6e-12
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GT--RGEASGWFPSAFVRL 193
A++D+ E +EL F+AGD + L D W G G+ G +P+ +V
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQ-LGLYPANYVEA 59
Score = 49.5 bits (119), Expect = 2e-08
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
A++D+ E +EL F+AGD + L D W RG
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWC--RGR 43
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 60.5 bits (147), Expect = 6e-12
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
L A++D+ + +EL R + +LD+ + WW G G+ PS+++
Sbjct: 22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGH-EGYAPSSYL 73
Score = 50.1 bits (120), Expect = 3e-08
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
L A++D+ + +EL R + +LD+ + WW
Sbjct: 22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRV 58
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 60.5 bits (147), Expect = 6e-12
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGE 181
S S + E + A++D+ + +EL R + +LD+ + WW R
Sbjct: 3 SGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNG 62
Query: 182 ASGWFPSAFVRLRVSQEDTVED 203
G+ PS+++ + +
Sbjct: 63 HEGYVPSSYLVEKSPNNLETYE 84
Score = 48.9 bits (117), Expect = 7e-08
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+E V+ A++D+ + +EL R + +LD+ + WW
Sbjct: 18 EETVVI---ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRV 57
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 60.0 bits (146), Expect = 6e-12
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
A A++D EL GD++ + + W G +G P FV
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 61
Score = 45.4 bits (108), Expect = 1e-06
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A++D EL GD++ + + W
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAE 44
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 60.0 bits (146), Expect = 6e-12
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 193
+LA A++D+ ++EL F GD++ +L+ + WW G P+ +++
Sbjct: 8 LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
Score = 46.9 bits (112), Expect = 3e-07
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGT 45
+LA A++D+ ++EL F GD++ +L+ + WW
Sbjct: 8 LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL 49
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 60.0 bits (146), Expect = 8e-12
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L +
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFE 71
Score = 45.4 bits (108), Expect = 1e-06
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
+ ++ + A +EL + GD++ ++ D +D WW G
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE 50
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 59.2 bits (144), Expect = 8e-12
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 141 LAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
+ EA +D + EL + GDVI + W G G GW P+A+++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
Score = 43.4 bits (103), Expect = 3e-06
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 8 LAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWWGTR 46
+ EA +D + EL + GDVI + W G
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKL 41
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 59.6 bits (145), Expect = 1e-11
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFV 191
AV D A + +L F+ G+++ V++ WW + G P ++
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYL 63
Score = 48.4 bits (116), Expect = 7e-08
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
AV D A + +L F+ G+++ V++ WW
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIA 48
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 60.2 bits (146), Expect = 1e-11
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
A++ A +E+ F +GD+I+V + W +G+ GWFP +V S
Sbjct: 5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS 64
Query: 197 QED 199
E+
Sbjct: 65 SEN 67
Score = 44.0 bits (104), Expect = 6e-06
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
A++ A +E+ F +GD+I+V + W +G+
Sbjct: 5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS 46
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 59.3 bits (144), Expect = 1e-11
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 142 AEAVWDHVAME-AEELGFRAGDVIEVLDTLDRD-WWWGT--RGEASGWFPSAFVRL 193
+ ++ H A L F GDV+ +L ++D W +G +A GWFPS++ +L
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65
Score = 43.1 bits (102), Expect = 6e-06
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 9 AEAVWDHVAME-AEELGFRAGDVIEVLDTLDRD-WWWGTR 46
+ ++ H A L F GDV+ +L ++D W +G
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEH 49
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 59.2 bits (144), Expect = 1e-11
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 193
+ VV A++D A EA +L G +L+ D WW G G+ PS +V
Sbjct: 2 SEIVV---AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGS-EGYIPSNYVTG 57
Query: 194 RVSQE 198
+ S
Sbjct: 58 KKSNN 62
Score = 49.9 bits (120), Expect = 2e-08
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ VV A++D A EA +L G +L+ D WW
Sbjct: 2 SEIVV---AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRA 40
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 59.0 bits (143), Expect = 1e-11
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 128 SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW----GTRGEAS 183
S S G +D V ++ D+ E E GF+ G +EVL+ WW+
Sbjct: 2 SSGSSGNLKDVYV---SIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFK 57
Query: 184 GWFPSAFVR 192
GW PS ++
Sbjct: 58 GWVPSNYLE 66
Score = 44.0 bits (104), Expect = 3e-06
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
++ D+ E E GF+ G +EVL+ WW+
Sbjct: 15 SIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYC 47
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 58.3 bits (142), Expect = 2e-11
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
A A++D EL GD++ + + W G +G P FV
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 57
Score = 44.1 bits (105), Expect = 2e-06
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A A++D EL GD++ + + W
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAE 40
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 58.8 bits (143), Expect = 2e-11
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQEDTV 201
A++ V +EL D + V + W+ R A G FP+ + + + +
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEPEHM 70
Score = 45.4 bits (108), Expect = 1e-06
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
A++ V +EL D + V + W+
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYN 46
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 58.8 bits (143), Expect = 2e-11
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGE--ASGWFPSAFVRLRVSQE 198
+D +A +EL ++GD + +L D +DWW + SG P+ F+ ++
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKK 68
Score = 46.5 bits (111), Expect = 3e-07
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTR 46
+D +A +EL ++GD + +L D +DWW
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQL 47
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 60.1 bits (145), Expect = 2e-11
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL-----DTLDRDWWWG 177
+ ++ L + F+ +A D+ A + +EL +AGDV+ V+ + D W G
Sbjct: 28 VEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG 87
Query: 178 TRGEA----------SGWFPSAFVR 192
+ G FP F
Sbjct: 88 VKESDWNQHKELEKCRGVFPENFTE 112
Score = 47.0 bits (111), Expect = 8e-07
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL-----DTLDRDWWWGTRGEAFEHLSQ 55
+ F+ +A D+ A + +EL +AGDV+ V+ + D W G + + +
Sbjct: 39 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKE 98
Query: 56 I 56
+
Sbjct: 99 L 99
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 58.8 bits (143), Expect = 2e-11
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
A++ + +EL R GD ++V+ D W+ G R + G FP +V
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
Score = 46.5 bits (111), Expect = 4e-07
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++ + +EL R GD ++V+ D W+ G
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGV 46
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 58.6 bits (142), Expect = 2e-11
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 138 FVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195
F A D + + L + GD+I+++ W G G F +V +
Sbjct: 8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLS 67
Query: 196 SQEDT 200
S +
Sbjct: 68 SGPSS 72
Score = 42.4 bits (100), Expect = 1e-05
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 5 FVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
F A D + + L + GD+I+++ W G
Sbjct: 8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL 50
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 58.5 bits (142), Expect = 2e-11
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRGEASGWFPSAFVR 192
A A ++ A + EL R GDV+ + D+ WW G GWFPS +V
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
Score = 43.1 bits (102), Expect = 7e-06
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGT 45
A A ++ A + EL R GDV+ + D+ WW G
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGE 48
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 58.1 bits (141), Expect = 3e-11
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 142 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW-GT--RGEASGWFPSAFVRL 193
+A++ H A + L F+ GD+I +L RD W G + + GWFP ++ R+
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
Score = 43.5 bits (103), Expect = 4e-06
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 9 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW 43
+A++ H A + L F+ GD+I +L RD W
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWH 45
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 58.5 bits (142), Expect = 3e-11
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 128 SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW---GTRGEASG 184
S S G ++ + + V+ + A + +EL +V+EV++ D + W G+ G
Sbjct: 2 SSGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQ-VG 60
Query: 185 WFPSAFVRLRVSQE 198
+ P +++ S
Sbjct: 61 YVPEKYLQFPTSSG 74
Score = 47.4 bits (113), Expect = 2e-07
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
++ + + V+ + A + +EL +V+EV++ D + W
Sbjct: 9 LRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWV 50
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 58.0 bits (141), Expect = 3e-11
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
+ ++D A A EL +V+EVL+ + W +R +G+ P +
Sbjct: 9 YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59
Score = 47.6 bits (114), Expect = 2e-07
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ ++D A A EL +V+EVL+ R WW
Sbjct: 9 YVKILYDFTARNANELSVLKDEVLEVLED-GRQWWKL 44
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 58.6 bits (142), Expect = 3e-11
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
M++ VV A++D+V+ ++L F+ GD + VL+ +WW G+ PS +V
Sbjct: 1 MEDIIVV---ALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV 56
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
M++ VV A++D+V+ ++L F+ GD + VL+ +WW
Sbjct: 1 MEDIIVV---ALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKA 40
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 58.2 bits (141), Expect = 4e-11
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 182
S G+D DF+ + D+ + + FR G+ + V+ + WW
Sbjct: 4 GSSGPLPNPEGLDSDFLA---VLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLST 59
Query: 183 --SGWFPSAFV 191
+ P V
Sbjct: 60 GRESYIPGICV 70
Score = 47.1 bits (112), Expect = 3e-07
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
D DF+ + D+ + + FR G+ + V+ + WW
Sbjct: 16 DSDFLA---VLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKA 54
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 57.7 bits (140), Expect = 4e-11
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 142 AEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
EA +D + EL + GD++ + W G GW P+A++
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
Score = 43.1 bits (102), Expect = 6e-06
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 9 AEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
EA +D + EL + GD++ + W
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKL 43
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 57.7 bits (140), Expect = 5e-11
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG--TRGEASGWFPSAFVRL 193
+ ++ ++ EEL F G+ +EV++ + D WW RG+ G P +V +
Sbjct: 9 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLVPKNYVVV 63
Score = 48.1 bits (115), Expect = 1e-07
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG 44
+ ++ ++ EEL F G+ +EV++ + D WW
Sbjct: 9 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKC 46
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 57.2 bits (139), Expect = 5e-11
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
A++ V +EL D + V + W+ R A G FP+ +
Sbjct: 8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58
Score = 43.7 bits (104), Expect = 3e-06
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
A++ V +EL D + V + W+
Sbjct: 8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYN 43
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 58.3 bits (141), Expect = 6e-11
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEA--------EELGFRAGDVIEVLDTLDRDWWW 176
S SS T G +E + A++D+ + EEL F+ G +I+V D D ++
Sbjct: 3 SGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFY 62
Query: 177 GTRGEA---SGWFPSAFV 191
RGE G P V
Sbjct: 63 --RGETCARLGLIPCNMV 78
Score = 47.2 bits (112), Expect = 4e-07
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
+ + EEL F+ G +I+V D D ++ RGE
Sbjct: 28 PLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFY--RGE 65
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 57.3 bits (139), Expect = 6e-11
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
D VV A++ + + ++L F+ G+ ++VL+ +WW + G+ PS +V
Sbjct: 6 QGDIVV---ALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYV 60
Score = 48.0 bits (115), Expect = 8e-08
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
D VV A++ + + ++L F+ G+ ++VL+ +WW
Sbjct: 6 QGDIVV---ALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKA 44
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 57.3 bits (139), Expect = 6e-11
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 193
V +A++D+ +EL F G +I +L+ ++D +W G G FPS V
Sbjct: 8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 65
Score = 42.7 bits (101), Expect = 1e-05
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGT 45
V +A++D+ +EL F G +I +L+ ++D +W G
Sbjct: 8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE 50
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 56.9 bits (138), Expect = 7e-11
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
+D A + EL + DV+EVLD R WW G+ G+ P +
Sbjct: 10 WVLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWWKVRDPAGQ-EGYVPYNIL 60
Score = 49.2 bits (118), Expect = 4e-08
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+D A + EL + DV+EVLD R WW
Sbjct: 10 WVLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWWKV 45
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 57.4 bits (139), Expect = 7e-11
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 142 AEAVWDHVAMEA-------EELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 191
A++D+ E+ EL F GD+I V +D D ++ G G PS F+
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFL 67
Score = 45.1 bits (107), Expect = 1e-06
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 9 AEAVWDHVAMEA-------EELGFRAGDVIEVLDTLDRDWWWGTRGE 48
A++D+ E+ EL F GD+I V +D D ++ GE
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFY--YGE 54
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 56.4 bits (137), Expect = 8e-11
Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVRL 193
+ ++ +V + +E+ GD I ++ W + +G P+ ++R+
Sbjct: 4 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
Score = 46.0 bits (110), Expect = 4e-07
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
+ ++ +V + +E+ GD I ++ W +
Sbjct: 4 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDT 44
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 56.7 bits (137), Expect = 1e-10
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 144 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
A+ + + + +E+ F GD+ V + L+ W W T R + G V
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61
Score = 45.5 bits (108), Expect = 7e-07
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT 45
A+ + + + +E+ F GD+ V + L+ W W T
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVT 45
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 59.8 bits (144), Expect = 1e-10
Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 16/172 (9%)
Query: 34 LDTLDR-DWWWG--TRGEAFEHLSQI-------IINHSISPNCDISKSLKRIRPHHALRR 83
D + +++ +R EA + L + ++ S P + S +++ +A+
Sbjct: 6 FDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPG-EYSLTVREADEGNAVCH 64
Query: 84 SVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAE 143
+ + E I + +L + S + + VV+
Sbjct: 65 YLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGT 124
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 193
+ +L F G+ +E+L ++DWW G +G P+ +V++
Sbjct: 125 --FKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGT-TGLVPANYVQI 173
Score = 47.5 bits (112), Expect = 2e-06
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ +L F G+ +E+L ++DWW
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEA 156
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 56.0 bits (136), Expect = 1e-10
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGE--ASGWFPSAFVRL 193
+ +D +A +EL ++GD + +L D +DWW + SG P+ F+
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTR 46
+ +D +A +EL ++GD + +L D +DWW
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQL 43
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 58.5 bits (141), Expect = 1e-10
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197
A+A +D A + EL + GD+I++L+ + WW G GWFPS +V S+
Sbjct: 5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSE 64
Query: 198 EDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELI 239
+ + L +T + + V + ++
Sbjct: 65 YLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVF 106
Score = 44.7 bits (105), Expect = 1e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGT 45
A+A +D A + EL + GD+I++L+ + WW G
Sbjct: 5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE 45
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 56.2 bits (136), Expect = 1e-10
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFV 191
+ ++ V+ A+ + +LGF G+ + +L+ +WW G+ P FV
Sbjct: 4 LQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFV 59
Score = 48.1 bits (115), Expect = 8e-08
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ ++ V+ A+ + +LGF G+ + +L+ +WW
Sbjct: 4 LQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKA 43
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 56.0 bits (135), Expect = 1e-10
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
+ A + +VA +EL G + V++ WW G+ GWFPS +V
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54
Score = 41.7 bits (98), Expect = 2e-05
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
+ A + +VA +EL G + V++ WW G+
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN 42
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 56.1 bits (136), Expect = 2e-10
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
+ +++ A EL G+ +EVLD R W SG+ PS +
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSGPS 66
Score = 47.2 bits (113), Expect = 2e-07
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ +++ A EL G+ +EVLD + WW
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLV 44
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 55.3 bits (134), Expect = 3e-10
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIE-VLDTLDRDWWWGTRGEASGWFPSAFVRL 193
A+A++ A EL F AG V + V + + W GT +G P +V
Sbjct: 10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
Score = 41.5 bits (98), Expect = 2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 6 VVLAEAVWDHVAMEAEELGFRAGDVIE-VLDTLDRDWWWGT 45
A+A++ A EL F AG V + V + + W GT
Sbjct: 10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT 50
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 56.6 bits (136), Expect = 3e-10
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 102 PIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAG 161
P + + S S S S G D A+++ A +L + G
Sbjct: 22 PPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIG 81
Query: 162 DVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRLR 194
DV+ + +T DW+ G + G FP +F+ ++
Sbjct: 82 DVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIK 116
Score = 42.0 bits (98), Expect = 6e-05
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
A+++ A +L + GDV+ + +T DW+ G +
Sbjct: 62 GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKH 101
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 56.5 bits (136), Expect = 4e-10
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFVRLR 194
+ A +++ A +EL G+ + + D +W+ R G P ++VR+
Sbjct: 4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61
Score = 44.5 bits (105), Expect = 6e-06
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+ A +++ A +EL G+ + + D +W+
Sbjct: 4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIA 41
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 55.2 bits (133), Expect = 5e-10
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGT--RGEASGWFPSAFV 191
+ AV+D+ A EEL R GD ++VL + D WW G G G FPS +V
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGR-VGVFPSNYV 87
Score = 44.8 bits (106), Expect = 2e-06
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGT 45
+ AV+D+ A EEL R GD ++VL + D WW G
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQ 73
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 55.9 bits (135), Expect = 5e-10
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSAFVRLRV--S 196
A ++D A +A+EL G+ + + + +W+ R G P FV + +
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIAT 67
Query: 197 QEDTVEDCLAALASGG 212
T D + + S
Sbjct: 68 GYATGNDVIEDIKSVN 83
Score = 42.9 bits (101), Expect = 2e-05
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A ++D A +A+EL G+ + + + +W+
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIA 43
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 55.1 bits (133), Expect = 5e-10
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVR 192
E A +A+E+ + DV+ VL D W +G R GE +GWFP F R
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGE-TGWFPEDFAR 71
Score = 41.2 bits (97), Expect = 3e-05
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
E A +A+E+ + DV+ VL D W +G R
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGER 56
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 56.1 bits (135), Expect = 7e-10
Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 436 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHV 495
+ ++ WEG+D+ + + V++ + LF L+ + + +
Sbjct: 11 SEPIQAWEGDDIKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSAS-PRMSGFM 69
Query: 496 YKARLNIDTSQIINLPDGKG 515
Y+ ++ I + L + +G
Sbjct: 70 YQGKIPIAGMVVNRLDEIEG 89
Score = 33.8 bits (77), Expect = 0.042
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 326 VRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 362
+I S ++ ++ C + +D W+ +
Sbjct: 90 SDCMFEITGSTVERIVVHC-NNNQDFQEWMEQLNRLT 125
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 53.6 bits (129), Expect = 1e-09
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 191
L RAGDV+ V +D ++ G G G P+ +
Sbjct: 29 GRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLL 67
Score = 42.4 bits (100), Expect = 1e-05
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 21 EELGFRAGDVIEVLDTLDRDWWWGTRGE 48
L RAGDV+ V +D ++ GE
Sbjct: 29 GRLALRAGDVVMVYGPMDDQGFY--YGE 54
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 54.1 bits (130), Expect = 1e-09
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRG 180
+ + + V+ A WD+ A + +EL + + + +LD + WW
Sbjct: 15 NSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAAN 73
Query: 181 EASGWFPSAFVR 192
+G+ PS +V
Sbjct: 74 R-TGYVPSNYVE 84
Score = 44.8 bits (106), Expect = 2e-06
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
V+ A WD+ A + +EL + + + +LD + WW
Sbjct: 27 HMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRV 68
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 53.8 bits (129), Expect = 2e-09
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 144 AVWDHVAMEA------EELGFRAGDVIEVLDTLDRDWWWGTRGEA----SGWFPSAFV 191
A + + + EL AG + V +D D ++ GE G PS FV
Sbjct: 22 ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFY--EGELLDGQRGLVPSNFV 77
Score = 43.0 bits (101), Expect = 1e-05
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 11 AVWDHVAMEA------EELGFRAGDVIEVLDTLDRDWWW------GTRG 47
A + + + EL AG + V +D D ++ G RG
Sbjct: 22 ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRG 70
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 53.1 bits (127), Expect = 2e-09
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 152 EAEELGFRAGDVIEVLDT-LDRDWWWG--TRGEASGWFPSAFVRLRV 195
L GD++E+ + +WW G T GWFP V V
Sbjct: 31 FGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV 77
Score = 37.3 bits (86), Expect = 9e-04
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 19 EAEELGFRAGDVIEVLDT-LDRDWWWG 44
L GD++E+ + +WW G
Sbjct: 31 FGGFLRLNPGDIVELTKAEAEHNWWEG 57
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 52.3 bits (126), Expect = 3e-09
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVRL 193
A++ + G+ + +++ D W R + G+ P++++R+
Sbjct: 10 CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63
Score = 44.6 bits (106), Expect = 2e-06
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
A++ + G+ + +++ D W R
Sbjct: 10 CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVR 47
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 51.9 bits (125), Expect = 4e-09
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
M E+ +V+A WD+ A + +EL + + + +LD + WW +G+ PS +V
Sbjct: 1 MTEEVIVIA--KWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANR-TGYVPSNYV 56
Query: 192 RLRVSQE 198
++
Sbjct: 57 ERKLEHH 63
Score = 44.5 bits (106), Expect = 2e-06
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
M E+ +V+A WD+ A + +EL + + + +LD + WW
Sbjct: 1 MTEEVIVIA--KWDYTAQQDQELDIKKNERLWLLDD-SKTWWRV 41
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 51.9 bits (125), Expect = 5e-09
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 131 SLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPS 188
S +E VV A +D+VA + +EL + + + +LD + WW + + +G+ PS
Sbjct: 2 STMAEEVVVV---AKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNK-TGFVPS 56
Query: 189 AFVRLRVSQE 198
+V + S
Sbjct: 57 NYVERKNSAR 66
Score = 44.2 bits (105), Expect = 2e-06
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
+E VV A +D+VA + +EL + + + +LD + WW
Sbjct: 6 EEVVVV---AKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRV 44
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 51.5 bits (124), Expect = 6e-09
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRLRVSQE 198
A++ +D VA + EL DV+E+LD R WW G+ SG+ P+ + + + E
Sbjct: 3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGD-SGFVPNNILDIMRTPE 60
Score = 41.5 bits (98), Expect = 2e-05
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++ +D VA + EL DV+E+LD R WW
Sbjct: 3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKV 38
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 52.5 bits (126), Expect = 8e-09
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 454 LIHQGEVIRVTSGMWT--NTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLP 511
L++ G+++ + + FL + L+ +R + Y A +D ++N+
Sbjct: 8 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVK 67
Query: 512 DGKG 515
D
Sbjct: 68 DNPP 71
Score = 37.9 bits (88), Expect = 0.001
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 323 GVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
++ K+ + +F + + K WL ++ + + R
Sbjct: 69 NPPMKDMFKLLMFPE--SRIFQAENAKIKREWLEVLEETKRALSDKR 113
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 54.9 bits (131), Expect = 9e-09
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 146 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQEDTVEDC 204
+D + E+L F+ GD++ + D + WW E G P +V +V
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSAL 202
Query: 205 LAALASGGS 213
+ G
Sbjct: 203 IGGNQEGSH 211
Score = 44.5 bits (104), Expect = 3e-05
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 13 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
+D + E+L F+ GD++ + D + WW E
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE 178
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 51.7 bits (124), Expect = 1e-08
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ 197
++ + +EL GD I + + W +GT SG P ++ + +
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT-KADE 79
Query: 198 EDT 200
T
Sbjct: 80 CST 82
Score = 39.0 bits (91), Expect = 3e-04
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT 45
++ + +EL GD I + + W +GT
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGT 59
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 50.9 bits (122), Expect = 1e-08
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 127 SSVTSLGMDEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG-TR 179
S S +D + A A++D V E E+ + GD++ +L D DWW T+
Sbjct: 2 SEFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK 61
Query: 180 GEASGWFPSAFVRL 193
G+ P ++ +
Sbjct: 62 NGNIGYIPYNYIEI 75
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 1 MDEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG 44
+D + A A++D V E E+ + GD++ +L D DWW
Sbjct: 9 IDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 51.4 bits (123), Expect = 1e-08
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 127 SSVTSLGMDEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG-TR 179
S S +D + A A++D V E E+ + GD++ +L D DWW T+
Sbjct: 2 SEFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK 61
Query: 180 GEASGWFPSAFVRL 193
G+ P ++ +
Sbjct: 62 NGNIGYIPYNYIEI 75
Score = 40.2 bits (94), Expect = 1e-04
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 9 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG 44
A A++D V E E+ + GD++ +L D DWW
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 53.9 bits (128), Expect = 2e-08
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-----WWWG 177
+ S L + F+ +A D+ A + +EL +AGDV+ V+ + + W G
Sbjct: 126 VEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG 185
Query: 178 TRGE----------ASGWFPSAFVR 192
+ G FP F
Sbjct: 186 VKESDWNQHKKLEKCRGVFPENFTE 210
Score = 42.8 bits (99), Expect = 9e-05
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-----WWWGTR 46
+ F+ +A D+ A + +EL +AGDV+ V+ + + W G +
Sbjct: 137 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVK 187
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 50.1 bits (120), Expect = 2e-08
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 142 AEAVWDHVAMEAE-ELGFRAGDVIEVLD-----TLDRDWWWG-TRGEASGWFPSAFVRL 193
A A++D V E E+ + GD++ +L D DWW T+ G+ P ++ +
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
Score = 39.3 bits (92), Expect = 1e-04
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 9 AEAVWDHVAMEAE-ELGFRAGDVIEVLD-----TLDRDWWWG 44
A A++D V E E+ + GD++ +L D DWW
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 51
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 49.7 bits (119), Expect = 2e-08
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59
Score = 49.7 bits (119), Expect = 2e-08
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 177
A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 50.0 bits (120), Expect = 3e-08
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 142 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW---GTRGEASGWFPSAFVRL 193
A ++D A EL G++I V + W +GE G P+ +V +
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGE-QGLVPTDYVEI 66
Score = 39.6 bits (93), Expect = 1e-04
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 9 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW 43
A ++D A EL G++I V + W
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWL 47
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 49.2 bits (117), Expect = 4e-08
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 152 EAEELGFRAGDVIEVLDT-LDRDWWWG--TRGEASGWFPSAFVR 192
L GD++E+ + +WW G T GWFP V
Sbjct: 23 FGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
Score = 34.6 bits (79), Expect = 0.008
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 19 EAEELGFRAGDVIEVLDT-LDRDWWWG 44
L GD++E+ + +WW G
Sbjct: 23 FGPFLRLNPGDIVELTKAEAEHNWWEG 49
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 50.0 bits (119), Expect = 6e-08
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 20/98 (20%)
Query: 117 SDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRD 173
+D +L +D E S + +A A+ D++A + L G V+ V L R
Sbjct: 8 ADRKLCADQECSHP--------ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRL 59
Query: 174 WWWGT--------RGEASGWFPSAFVR-LRVSQEDTVE 202
+W G+ G+FPS+ VR + + V+
Sbjct: 60 FWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPGKVD 97
Score = 39.2 bits (91), Expect = 3e-04
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRDWWWGT 45
+ +A A+ D++A + L G V+ V L R +W G+
Sbjct: 19 SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGS 64
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 54.0 bits (128), Expect = 7e-08
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS----GWFPSAFVRL 193
A++D+ E +EL F+AGD + ++ D W +G G +P+ +V
Sbjct: 432 RALYDYEGQEHDELSFKAGDELTKMEDEDEQGWC--KGRLDNGQVGLYPANYVEA 484
Score = 44.0 bits (102), Expect = 8e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
A++D+ E +EL F+AGD + ++ D W
Sbjct: 432 RALYDYEGQEHDELSFKAGDELTKMEDEDEQGWC 465
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 52.1 bits (125), Expect = 2e-07
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFVRL 193
D + V A++D VA L G+ + VL W + + GW PS ++
Sbjct: 42 DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 98
Query: 194 RVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFV 246
S E + R + LLS+ S +VRE ++
Sbjct: 99 VNSLEK--HSWY-------HGPVSRNAAEYLLSSGINGSFLVRESESSPGQRS 142
Score = 44.4 bits (105), Expect = 7e-05
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
D + V A++D VA L G+ + VL W
Sbjct: 42 DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWC 80
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 46.5 bits (110), Expect = 6e-07
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRG 180
S SS SL L +A + A + ++ GD++ V+ D ++ W G
Sbjct: 3 SGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG 62
Query: 181 EASGWFPSAFVRL 193
G+ S+F++
Sbjct: 63 VTKGFVYSSFLKP 75
Score = 33.0 bits (75), Expect = 0.044
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWW----GTRG 47
L +A + A + ++ GD++ V+ D ++ W T+G
Sbjct: 19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKG 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 6e-07
Identities = 68/570 (11%), Positives = 149/570 (26%), Gaps = 175/570 (30%)
Query: 15 HVAMEAEELGFRAGDVIEV-LDTLDRDWWWGTRGEAFEHLSQIIINHSISPNC-DISKSL 72
H+ E E ++ D++ V D ++ +C D+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNF-----------------------DCKDVQDMP 42
Query: 73 KRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSV--- 129
K I + + ++ L LLS E V
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLF--------------------WTLLSKQEEMVQKF 82
Query: 130 --TSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFP 187
L ++ F + + E + IE D L D
Sbjct: 83 VEEVLRINYKF------LMSPIKTEQRQPSMMTRMYIEQRDRLYND-------------N 123
Query: 188 SAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSI----------SLLSNDQVRSRVVRE 237
F + VS+ AL LR ++ + ++ D S V+
Sbjct: 124 QVFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 238 LINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL 297
++ + ++ + C + E +Q + ++ +S +++ ++
Sbjct: 179 KMDFKIFWLNL---------KNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 298 DWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL----FCCRSL---ED 350
LK K + + + + + ++ C+ L
Sbjct: 228 HSIQAELR----RLLKSKP--YENCLLVLLNV-------QNAKAWNAFNLSCKILLTTRF 274
Query: 351 K--ARWLAAFQQERALVEQDREDGLE-------FAPA----AKELAR-----------MS 386
K +L+A ++ L ++L R +
Sbjct: 275 KQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 387 AARCHSSRPPTDHPDYVK--ITEALEAMRDVAMLI---NERKRRMESL----------EK 431
A R D K + L + + ++ + E ++ + L
Sbjct: 334 AESI---RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 432 LAA--WQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL 489
L + W ++ D++ ++L V + T+ + L +
Sbjct: 391 LLSLIWFDVIK----SDVMVVVNKLHKYSLVEK-----QPKESTISIPSIYLELKVKLEN 441
Query: 490 KRNTH-----VYKARLNIDTSQIINLP-DG 513
+ H Y D+ +I D
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Score = 50.2 bits (119), Expect = 1e-06
Identities = 84/619 (13%), Positives = 173/619 (27%), Gaps = 200/619 (32%)
Query: 3 EDFV--VLAEAVWDHVAME--AEELGFRAGDVIE----------VLDTLDRDWWW----- 43
+D +L++ DH+ M A R + V + L ++ +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 44 -----GTRGEAFEHLSQIIINHSISPNCDISK-SLKRIRPHHALRRSVSQPLGINELSPL 97
++ Q + + N +K ++ R++P+ LR+++ +
Sbjct: 99 KTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKLRQALLE---------- 146
Query: 98 LRRKPI----GTRPGDGTNSL---CCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVA 150
LR G G G + C ++ + + F W ++
Sbjct: 147 LRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKI--------F-------WLNLK 190
Query: 151 MEAEELGFRAGDVIEVLDTLDR--DWWWGTRGEAS-------GWFPSAFVRLRVSQE--- 198
V+E+L L D W +R + S + RL S+
Sbjct: 191 NC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 199 -----DTVED--CLAALASGGSKTL--RRRTSISLLSNDQVRSRVVRELINTERDFVKVL 249
V++ A + K L R ++ + + + + L
Sbjct: 246 CLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLD------HHSMTL 298
Query: 250 -HDVSEGYLAEC--RRRNDMFSPEQIQTI-------FG----------------NLEDIL 283
D + L + R D+ P ++ T N + +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 284 AFQSSFLEDLETKLDWDAPYKSC-IGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
S L LE ++ + + F P + + + W
Sbjct: 357 TIIESSLNVLEPA-EYRKMFDRLSV----------FPPSAHIP-TILLSLI------W-- 396
Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDG--------LEFAPAAKELARM--------S 386
++ + + +LVE+ ++ LE + + +
Sbjct: 397 --FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 387 AARCHS----SRPPTD---------HPDYVKITEALEAMRDVAMLIN----ERKRRMESL 429
+ P D H ++ E + R V ++ E+K R +S
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDFRFLEQKIRHDST 512
Query: 430 EKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWT---NTITLFLFDH--QLVYC 484
AW ++ T QL I + N I FL L+
Sbjct: 513 ----AWNAS------GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 485 K-RDILKR-----NTHVYK 497
K D+L+ + +++
Sbjct: 563 KYTDLLRIALMAEDEAIFE 581
Score = 39.1 bits (90), Expect = 0.004
Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 50/269 (18%)
Query: 280 EDILA-FQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKD 338
+DIL+ F+ +F+++ + K D P KS + + + H S ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIM-SKDAVSGTLRLFWTLLSKQE 76
Query: 339 KWL-LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARM-----SAARCHS 392
+ + F L ++L + + + R+ + ++ R+ A+ +
Sbjct: 77 EMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 393 SRPPTDHPDYVKITEALEAMRDVA------M-------LINERKRRMESLEKLA---AWQ 436
SR Y+K+ +AL +R + + + + K+ W
Sbjct: 132 SRLQP----YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 437 QRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWT----NTITLFLFDHQLVYCKRDILKRN 492
E ++E +L++Q WT ++ + L H + R +LK
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQ------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS- 240
Query: 493 THVYKARL----NIDTSQIINLPDGKGRT 517
Y+ L N+ ++ N + +
Sbjct: 241 -KPYENCLLVLLNVQNAKAWNAFNLSCKI 268
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 50.1 bits (120), Expect = 9e-07
Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 20/170 (11%)
Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS--GWFPSAFVRLRV 195
V A++D+ + +L F+ G+ +++++ + DWW G+ PS +V
Sbjct: 1 MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Query: 196 SQEDTVEDCLAALASGGSKTLRRRTSISLL--SNDQVRSRVVRELINTERDFVKVLHDVS 253
S + + RR S LL + + + +VRE T+ + + D
Sbjct: 61 SIQAEEWYF---------GKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFD 111
Query: 254 EGYLAECR------RRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL 297
+ + F F +L+ ++A+ S + L +L
Sbjct: 112 NAKGLNVKHYKIRKLDSGGFYITSRTQ-FNSLQQLVAYYSKHADGLCHRL 160
Score = 43.6 bits (103), Expect = 1e-04
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
V A++D+ + +L F+ G+ +++++ + DWW
Sbjct: 1 MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 38
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 50.0 bits (120), Expect = 1e-06
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVRLRVSQE 198
A ++ ++L F GDV+ ++ W+ + + G P+ +V+ R +
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 72
Score = 45.4 bits (108), Expect = 3e-05
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
A ++ ++L F GDV+ ++ W+ +
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK 51
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 45.9 bits (108), Expect = 6e-06
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS- 183
S SS + D A+++ A +L + GDV+ + +T DW+ G +
Sbjct: 3 SGSSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKM 61
Query: 184 --GWFPSAFVRLRVSQEDTVEDC 204
G FP +F+ ++ + +
Sbjct: 62 LQGIFPKSFIHIKEVTVEKRRNT 84
Score = 35.5 bits (81), Expect = 0.019
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
A+++ A +L + GDV+ + +T DW+ G
Sbjct: 20 GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRG 54
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 46.8 bits (110), Expect = 1e-05
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQED 199
A++ H A+E+ GD+I V + G + +G +PS VR ++
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVK 504
Score = 35.6 bits (81), Expect = 0.037
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
A++ H A+E+ GD+I V + G
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGV 481
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 44.7 bits (105), Expect = 1e-05
Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 22/162 (13%)
Query: 133 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAF 190
+ ++ V+ A+ + +LGF G+ + +L+ +WW G+ P F
Sbjct: 9 PLQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNF 64
Query: 191 VRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVR--SRVVRELINTERDFVKV 248
V S E K L R+ + L S ++RE +T F
Sbjct: 65 VAKANSLEPEPWFF---------KNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLS 115
Query: 249 LHDVSEGYLAECRRRNDMFSPEQIQTI-----FGNLEDILAF 285
+ D + + I F L +++
Sbjct: 116 VRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 157
Score = 42.7 bits (100), Expect = 7e-05
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG----TRGEAFEHLSQII 57
++ V+ A+ + +LGF G+ + +L+ +WW T E F + +
Sbjct: 11 QDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVA 66
Query: 58 INHSISPNCDISKSLKRIRPHHALR 82
+S+ P K+L R L
Sbjct: 67 KANSLEPEPWFFKNLSRKDAERQLL 91
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 46.4 bits (110), Expect = 2e-05
Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 20/185 (10%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--GTRG 180
SD+ +S G V A++D+ + +L F+ G+ +++++ + DWW
Sbjct: 69 SDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLST 128
Query: 181 EASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLL--SNDQVRSRVVREL 238
+G+ PS +V S + + RR S LL + + + +VRE
Sbjct: 129 GQTGYIPSNYVAPSDSIQAEEWYF---------GKITRRESERLLLNAENPRGTFLVRES 179
Query: 239 INTERDFVKVLHDVSEGYLAECR------RRNDMFSPEQIQTIFGNLEDILAFQSSFLED 292
T+ + + D + + F F +L+ ++A+ S +
Sbjct: 180 ETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQ-FNSLQQLVAYYSKHADG 238
Query: 293 LETKL 297
L +L
Sbjct: 239 LCHRL 243
Score = 39.5 bits (92), Expect = 0.002
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
A++D+ + +L F+ G+ +++++ + DWW
Sbjct: 90 ALYDYESRTETDLSFKKGERLQIVNNTEGDWW 121
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 42.3 bits (99), Expect = 2e-05
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 17/71 (23%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---------------WWWGT--RGEA 182
A++ E+L GDV+ V + W G R
Sbjct: 12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 71
Query: 183 SGWFPSAFVRL 193
G FP +V
Sbjct: 72 RGDFPGTYVEF 82
Score = 31.5 bits (71), Expect = 0.12
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
A++ E+L GDV+ V + GE
Sbjct: 12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGE 53
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 43.9 bits (104), Expect = 1e-04
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 129 VTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--GTRGEASGWF 186
G+ V A++D+ A+ E+L F+ GD + VL+ +WW G+
Sbjct: 2 AMGSGIRIIVV----ALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYI 56
Query: 187 PSAFVRLRVSQE 198
PS +V S E
Sbjct: 57 PSNYVARVDSLE 68
Score = 38.5 bits (90), Expect = 0.005
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
A++D+ A+ E+L F+ GD + VL+ +WW
Sbjct: 13 ALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWK 44
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 36.1 bits (83), Expect = 0.003
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRG 180
S T G E VVL D A + EL + G +E+L+ + W
Sbjct: 5 SPGIPGSTLSGGCELTVVLQ----DFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTT 60
Query: 181 EAS----GWFPSAFVRL 193
E S G PS+ + +
Sbjct: 61 ERSPPQEGLVPSSTLCI 77
Score = 32.7 bits (74), Expect = 0.038
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWW 42
+ D A + EL + G +E+L+ + W
Sbjct: 22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWC 55
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 34.3 bits (78), Expect = 0.012
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 17/67 (25%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRD---------------WWWGT--RGEASGWF 186
A++D+ E++ GD++ V W G G F
Sbjct: 10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69
Query: 187 PSAFVRL 193
P +V
Sbjct: 70 PGTYVEY 76
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 36.0 bits (82), Expect = 0.022
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 15/60 (25%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLD---------RDWWWGT------RGEASGWFPS 188
++ LGF GDV VLDTL W R + G P+
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68
Score = 35.6 bits (81), Expect = 0.028
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
++ LGF GDV VLDTL
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQS 42
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 34.4 bits (78), Expect = 0.075
Identities = 37/213 (17%), Positives = 61/213 (28%), Gaps = 34/213 (15%)
Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTR------GEASGWFPSAFVRLRVSQ 197
++ L F G+V V+DTL W R G P+ + R Q
Sbjct: 114 EYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPN---KNRAEQ 170
Query: 198 EDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYL 257
+V+ +GG + R S +R + V
Sbjct: 171 LASVQ-YTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERV----- 224
Query: 258 AECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSG 317
+ + IFG + D+ KL + P I ++ +
Sbjct: 225 ----VLREAGFLRPVT-IFGPIADVAR----------EKLAREEPDIYQIAKSEPRDAGT 269
Query: 318 FHPHLGVTVRHAIK-IHCSDKDKWLLFCCRSLE 349
G+ H IK I DK L +++
Sbjct: 270 DQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVD 302
Score = 32.9 bits (74), Expect = 0.26
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 14 DHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTR 46
++ L F G+V V+DTL W R
Sbjct: 114 EYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIR 149
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 34.0 bits (77), Expect = 0.10
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPS 188
D V + + F A D + V + + DWW G G G+ PS
Sbjct: 53 DDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
Score = 32.5 bits (73), Expect = 0.27
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 14 DHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
D V + + F A D + V + + DWW
Sbjct: 53 DDVPVPGMAISFEAKDFLHVKEKFNNDWW 81
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 33.2 bits (76), Expect = 0.16
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 23 LGFRAGDVIEVLDTLDRDWW 42
L F+ GD++ V + D +WW
Sbjct: 27 LPFKHGDILHVTNASDDEWW 46
Score = 33.2 bits (76), Expect = 0.16
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 156 LGFRAGDVIEVLDTLDRDWW 175
L F+ GD++ V + D +WW
Sbjct: 27 LPFKHGDILHVTNASDDEWW 46
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 33.2 bits (76), Expect = 0.19
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 22 ELGFRAGDVIEVLDTLDRDWW 42
L FR GDV+ V+D D +WW
Sbjct: 22 ALSFRFGDVLHVIDAGDEEWW 42
Score = 33.2 bits (76), Expect = 0.19
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 155 ELGFRAGDVIEVLDTLDRDWW 175
L FR GDV+ V+D D +WW
Sbjct: 22 ALSFRFGDVLHVIDAGDEEWW 42
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 29.7 bits (66), Expect = 0.64
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 154 EELGFRAGDVIEVLDTLD--RDWWWGTRGEAS-GWFPSAFVRLRVSQEDTVED 203
EL F+ G+ IE++ D W G S G+ + V + +D
Sbjct: 42 NELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEIDYDSLKLKKD 94
Score = 26.6 bits (58), Expect = 7.3
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 21 EELGFRAGDVIEVLDTLD--RDWWWG 44
EL F+ G+ IE++ D W G
Sbjct: 42 NELSFKQGEQIEIIRITDNPEGKWLG 67
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 31.4 bits (70), Expect = 0.69
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 14 DHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTR 46
++ L F G+V V+DTL W R
Sbjct: 106 EYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIR 141
Score = 31.4 bits (70), Expect = 0.69
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTR 179
++ L F G+V V+DTL W R
Sbjct: 106 EYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIR 141
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 29.8 bits (67), Expect = 0.72
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 327 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 360
HA ++ SD+ L S + A W+ Q
Sbjct: 66 PHAFQVILSDR-PCLELSAESEAEMAEWMQHLCQ 98
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 29.3 bits (66), Expect = 1.0
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 10/57 (17%)
Query: 313 KHKSGFHPHLGVTVR---------HAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 360
P LG TV ++ + +F RW+ AFQ+
Sbjct: 45 VAALESQPLLGFTVTLVKDENSESKVFQLLHKGM-VFYVFKADDAHSTQRWIDAFQE 100
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 30.6 bits (70), Expect = 1.4
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 33/109 (30%)
Query: 368 DREDGLEFAPAAK---------ELARMSAARCHSSRPPTDHP---DYVKITEALEAMRDV 415
E F +L + R TD D + + L A+
Sbjct: 289 FAEVSKAFKNTRYFLQIDIDPAKLGK---------RHKTDIAVLAD-AQ--KTLAAI--- 333
Query: 416 AMLINERKRRMESLEKLAAWQQRVEGWEGE--DLIETSSQLIHQGEVIR 462
+ ES A V+ W L + + +V+R
Sbjct: 334 ----LAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLR 378
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 29.7 bits (67), Expect = 1.8
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 405 ITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE-----DLIETSSQL----I 455
I+ A++ + D+ E + E LE+LA + V + E + ++ + +
Sbjct: 11 ISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDSIRDYDP 70
Query: 456 HQGEVIRVTSGMWTNTITL 474
VI W + + +
Sbjct: 71 LNASVISRNPTNWNDQVEI 89
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 28.8 bits (64), Expect = 2.0
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 305 SCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERA 363
+ + P G + + ++ + L C + +D W A + +
Sbjct: 57 NVRDIKVGQECQDVQPPEGRSRDGLLTVNLREG-SRLHLCAETRDDAIAWKTALMEANS 114
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of
RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A
{Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A*
1qmh_A* 1qmi_A
Length = 358
Score = 29.6 bits (66), Expect = 2.2
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 211 GGSKTLRRRTSISLLSNDQVRSRVVRE------LINTERDFVKVLHDVSEGYLAECRRRN 264
GG + LR S+S+++ +R L+ VK ++ + +
Sbjct: 34 GGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGS 93
Query: 265 D--MFSPEQIQ 273
+F P ++
Sbjct: 94 QRLLFRPGTVR 104
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal
transduction, signaling protein; NMR {Caenorhabditis
elegans} SCOP: b.55.1.1
Length = 119
Score = 28.4 bits (63), Expect = 2.6
Identities = 6/43 (13%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 474 LFLFDHQLVYCKRDI-LKRNTHVYKARLNIDTSQIINLPDGKG 515
+FLF +++++ ++D ++ + + + +D N+
Sbjct: 30 VFLFRNKIMFTEQDASTSPPSYTHYSSIRLDK---YNIRQHTT 69
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel,
homodimer; NMR {Paramecium bursaria chlorella virus 1}
SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 27.3 bits (61), Expect = 6.4
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 57 IINHSISPNCD--ISKSLKRIRPHHALR 82
I NHS PN ++ LKR+R ++
Sbjct: 67 IFNHSKDPNARHELTAGLKRMR-IFTIK 93
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 27.7 bits (62), Expect = 8.6
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 58 INHSISPNCDISK----SLKRI 75
+NH PNC+ K R+
Sbjct: 169 MNHCCQPNCETQKWSVNGDTRV 190
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 27.8 bits (61), Expect = 9.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 323 GVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ--ERALVEQD 368
G H I I D+ LF C + D+ W+AAFQ+ +R ++ Q+
Sbjct: 334 GHHWPHGITIVTPDRK--FLFACETESDQREWVAAFQKAVDRPMLPQE 379
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 27.8 bits (62), Expect = 9.4
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 58 INHSISPNCDISK----SLKRI 75
+NHS PNC+ K R+
Sbjct: 194 MNHSCEPNCETQKWTVNGQLRV 215
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 9.4
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 376 APAAKELA--RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLA 433
P +A + + S P E +++ + +N + R+ +L
Sbjct: 1199 VPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKR----QLV 1254
Query: 434 AWQQRVEGWEGEDL 447
+ +++ W +L
Sbjct: 1255 TREAQIKDWVENEL 1268
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 27.3 bits (61), Expect = 9.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 58 INHSISPNC 66
INHS PNC
Sbjct: 128 INHSCEPNC 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,517,261
Number of extensions: 533647
Number of successful extensions: 2288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2080
Number of HSP's successfully gapped: 502
Length of query: 518
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 420
Effective length of database: 3,965,535
Effective search space: 1665524700
Effective search space used: 1665524700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)